Psyllid ID: psy9150

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD
Secondary Structure (PSIPRED)
ccccEEEEEEccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEEEccccccccEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccEEEEEEEEccccccEEEEEEccEEccccccEEEEEEEcccccccEEEEEcccEcccccEEEEEEEEccccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MHSHFDYEYVLGHKIVFICmakgkprphitwfkDGVELYTHMYVNLhewhygtdrikskieidpatqmdaGIYEcyadnmynvdtrtfktdfsitfd
Flexible Loop (DISEMBL)
MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKtdfsitfd
Low Complexity Region (SEG)
MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD
Disordered region (IsUnstruct)
****FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI***
Disordered Region (DISOPRED)
**SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT**
Disordered Region (DISEMBL)
MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD
Disordered Region (DISPRO)
MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
O01761	8081	Muscle M-line assembly pr	no	N/A	0.608	0.007	0.380	8e-06
Q90W79	1027	Contactin-5 OS=Gallus gal	yes	N/A	0.690	0.065	0.342	8e-06
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.742	0.014	0.329	1e-05
P68500	1098	Contactin-5 OS=Mus muscul	yes	N/A	0.628	0.055	0.342	2e-05
Q868Z9	2898	Papilin OS=Drosophila mel	no	N/A	0.670	0.022	0.337	2e-05
O35569	868	Pro-neuregulin-2, membran	yes	N/A	0.742	0.082	0.355	3e-05
O14511	850	Pro-neuregulin-2, membran	no	N/A	0.742	0.084	0.355	3e-05
P56974	756	Pro-neuregulin-2, membran	no	N/A	0.742	0.095	0.355	3e-05
O94779	1100	Contactin-5 OS=Homo sapie	no	N/A	0.628	0.055	0.342	5e-05
Q7ZW34	1056	Contactin-5 OS=Danio reri	no	N/A	0.628	0.057	0.314	5e-05

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 19   CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
            C   G P+P I WFKDG  ++ +  + L E   G      ++ +D AT+ DAG Y C A+
Sbjct: 5836 CKFSGDPKPTIKWFKDGERVFPYGRLQLIESPDGV----CELVVDSATRQDAGGYRCVAE 5891

Query: 79   NMY 81
            N Y
Sbjct: 5892 NTY 5894

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.
Caenorhabditis elegans (taxid: 6239)

>sp|Q90W79|CNTN5_CHICK Contactin-5 OS=Gallus gallus GN=CNTN5 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D E   G ++ + C A GKPRP   W K+GV L+    + +         I S + I   
Sbjct: 325 DTELDSGEQLRWECKATGKPRPTYRWLKNGVPLWPQSRIEM---------INSVLMIRTV 375

Query: 66  TQMDAGIYECYADNMY 81
              DAG+Y+C A+N Y
Sbjct: 376 NISDAGMYQCLAENKY 391

Contactins mediate cell surface interactions during nervous system development. May contribute to the formation of somatotopic maps of cerebellar afferents during the development of the nervous system.

Gallus gallus (taxid: 9031)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 13   HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72
            H +  +C A+G P P+ITWFKDG  L T   V          R   ++++  A   DAG+
Sbjct: 1518 HLVQLLCEARGVPTPNITWFKDGALLPTSTKVVY-------TRGGRQLQLGRAQSSDAGV 1570

Query: 73   YECYADNMYNVDTRTFKTD 91
            Y C A N      +  + D
Sbjct: 1571 YTCKASNAVGAAEKATRLD 1589

Homo sapiens (taxid: 9606)

>sp|P68500|CNTN5_MOUSE Contactin-5 OS=Mus musculus GN=Cntn5 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G  + + C A GKPRP   W K+G  L     V         D +   + I    Q DAG
Sbjct: 403 GSPLQWECKATGKPRPTYRWLKNGAPLLPQSRV---------DTVNGILAIQSVNQSDAG 453

Query: 72  IYECYADNMY 81
           +Y+C A+N Y
Sbjct: 454 MYQCLAENKY 463

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons (By similarity). Involved in neuronal activity in the auditory system.

Mus musculus (taxid: 10090)

>sp|Q868Z9|PPN_DROME Papilin OS=Drosophila melanogaster GN=Ppn PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 9    YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQ 67
            Y  G  IV  C  +G P P++TW KD V LY +  V + ++ H        ++ +   T 
Sbjct: 2765 YTPGSTIVMSCSVQGYPEPNVTWIKDDVPLYNNERVQITYQPH--------RLVLSDVTS 2816

Query: 68   MDAGIYECYADNMY 81
             D+G Y C A N Y
Sbjct: 2817 ADSGKYTCRASNAY 2830

Essential extracellular matrix (ECM) protein that influences cell rearrangements. May act by modulating metalloproteinases action during organogenesis. Able to non-competitively inhibit procollagen N-proteinase, an ADAMTS metalloproteinase.

Drosophila melanogaster (taxid: 7227)

>sp|O35569|NRG2_RAT Pro-neuregulin-2, membrane-bound isoform OS=Rattus norvegicus GN=Nrg2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 11  LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           +G K    C  A G P+P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct: 265 VGEKQSLKCEAAAGNPQPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVKVED 321

Query: 70  AGIYECYADNMYNVDT 85
           AG Y C A+N+   DT
Sbjct: 322 AGEYVCEAENILGKDT 337

Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.

Rattus norvegicus (taxid: 10116)

>sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform OS=Homo sapiens GN=NRG2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 11  LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           +G K    C  A G P+P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct: 249 VGEKQSLKCEAAAGNPQPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVKVED 305

Query: 70  AGIYECYADNMYNVDT 85
           AG Y C A+N+   DT
Sbjct: 306 AGEYVCEAENILGKDT 321

Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.

Homo sapiens (taxid: 9606)

>sp|P56974|NRG2_MOUSE Pro-neuregulin-2, membrane-bound isoform OS=Mus musculus GN=Nrg2 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 11  LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           +G K    C  A G P+P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct: 157 VGEKQSLKCEAAAGNPQPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVRVED 213

Query: 70  AGIYECYADNMYNVDT 85
           AG Y C A+N+   DT
Sbjct: 214 AGEYVCEAENILGKDT 229

Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.

Mus musculus (taxid: 10090)

>sp|O94779|CNTN5_HUMAN Contactin-5 OS=Homo sapiens GN=CNTN5 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G  + + C A GKPRP   W K+GV L     V +         +   + I    Q DAG
Sbjct: 404 GSPLRWECKATGKPRPTYRWLKNGVPLSPQSRVEM---------VNGVLMIHNVNQSDAG 454

Query: 72  IYECYADNMY 81
           +Y+C A+N Y
Sbjct: 455 MYQCLAENKY 464

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons. Probably involved in neuronal activity in the auditory system.

Homo sapiens (taxid: 9606)

>sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G ++ + C A GKPRP   W ++G  L T   V +         +  ++ I    Q D+G
Sbjct: 362 GEQLRWECRATGKPRPTYRWLRNGEPLSTQSRVEM---------VNGELTIHRLQQADSG 412

Query: 72  IYECYADNMY 81
           +Y+C A+N Y
Sbjct: 413 MYQCIAENKY 422

Contactins mediate cell surface interactions during nervous system development.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
270007715	162	hypothetical protein TcasGA2_TC014409 [T	1.0	0.598	0.731	1e-40
110759011	161	PREDICTED: hemicentin-1-like [Apis melli	1.0	0.602	0.731	2e-40
380020407	161	PREDICTED: hemicentin-1-like [Apis flore	1.0	0.602	0.731	2e-40
350421693	161	PREDICTED: hemicentin-1-like [Bombus imp	1.0	0.602	0.721	4e-40
340726806	161	PREDICTED: hemicentin-1-like [Bombus ter	1.0	0.602	0.721	5e-40
158301961	169	AGAP001504-PA [Anopheles gambiae str. PE	1.0	0.573	0.721	7e-40
195128693	164	GI13691 [Drosophila mojavensis] gi|19392	0.979	0.579	0.747	8e-40
170052408	163	conserved hypothetical protein [Culex qu	1.0	0.595	0.721	9e-40
157117945	163	hypothetical protein AaeL_AAEL008111 [Ae	1.0	0.595	0.721	1e-39
383851270	161	PREDICTED: hemicentin-1-like [Megachile	1.0	0.602	0.721	1e-39

>gi|270007715|gb|EFA04163.1| hypothetical protein TcasGA2_TC014409 [Tribolium castaneum]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 88/97 (90%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFDYEY LGHKI F+C+A+GKPRPHITW+KDG E++TH+Y+N+HEW+ G D+IKSK+
Sbjct: 66  LASHFDYEYTLGHKIAFVCVARGKPRPHITWYKDGSEIFTHLYLNIHEWNIGEDKIKSKL 125

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 126 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIVFD 162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110759011|ref|XP_001120611.1| PREDICTED: hemicentin-1-like [Apis mellifera]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 87/97 (89%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFD EYVLGHKIVF+C+A+G PRPHITWFKDG E+YTH+Y+++HEW  G D++KSK+
Sbjct: 65  LASHFDLEYVLGHKIVFLCVARGNPRPHITWFKDGAEIYTHLYLHVHEWQVGEDKVKSKL 124

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 125 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 161

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020407|ref|XP_003694078.1| PREDICTED: hemicentin-1-like [Apis florea]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 87/97 (89%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFD EYVLGHKIVF+C+A+G PRPHITWFKDG E+YTH+Y+++HEW  G D++KSK+
Sbjct: 65  LASHFDLEYVLGHKIVFLCVARGNPRPHITWFKDGAEIYTHLYLHVHEWQVGEDKVKSKL 124

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 125 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 161

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421693|ref|XP_003492926.1| PREDICTED: hemicentin-1-like [Bombus impatiens]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 86/97 (88%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFD EYVLGHKI F+C+A+G PRPHITWFKDG E+YTH+Y+++HEW  G D++KSK+
Sbjct: 65  LASHFDLEYVLGHKIAFLCVARGNPRPHITWFKDGAEIYTHLYLHVHEWQVGPDKVKSKL 124

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 125 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 161

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726806|ref|XP_003401744.1| PREDICTED: hemicentin-1-like [Bombus terrestris]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 86/97 (88%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFD EYVLGHKI F+C+A+G PRPHITWFKDG E+YTH+Y+++HEW  G D++KSK+
Sbjct: 65  LASHFDLEYVLGHKIAFLCVARGNPRPHITWFKDGAEIYTHLYLHVHEWQVGPDKVKSKL 124

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 125 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 161

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158301961|ref|XP_321617.4| AGAP001504-PA [Anopheles gambiae str. PEST] gi|157012724|gb|EAA43173.4| AGAP001504-PA [Anopheles gambiae str. PEST]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 88/97 (90%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFDYEYVLGHKI F+C+A+G PRP ITWFKDGVE+++H+Y+++HEW+ G D++KSKI
Sbjct: 73  LASHFDYEYVLGHKIAFLCVARGTPRPTITWFKDGVEIFSHLYLHVHEWYIGKDKVKSKI 132

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 133 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 169

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195128693|ref|XP_002008796.1| GI13691 [Drosophila mojavensis] gi|193920405|gb|EDW19272.1| GI13691 [Drosophila mojavensis]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 84/95 (88%)

Query: 3   SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI 62
           SHFD EYVLGHKI F+C+AKG PRPHITW+KDG E+Y H+Y+++HEW  G DR+KSKIEI
Sbjct: 70  SHFDLEYVLGHKIAFLCVAKGNPRPHITWYKDGAEIYQHLYMHVHEWTIGEDRVKSKIEI 129

Query: 63  DPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           DPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 130 DPATQMDAGLYECTADNMYSIDRRSFKTDFSIAFD 164

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052408|ref|XP_001862208.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873363|gb|EDS36746.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 88/97 (90%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFDYEYVLGHKI F+C+A+G PRP ITWFKDGVE+++H+Y+++HEW+ G D++KSKI
Sbjct: 67  LASHFDYEYVLGHKIAFLCVARGTPRPTITWFKDGVEIFSHLYLHVHEWYIGKDKVKSKI 126

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 127 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 163

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117945|ref|XP_001653113.1| hypothetical protein AaeL_AAEL008111 [Aedes aegypti] gi|108875908|gb|EAT40133.1| AAEL008111-PA [Aedes aegypti]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 88/97 (90%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFDYEYVLGHKI F+C+A+G PRP ITWFKDGVE+++H+Y+++HEW+ G D++KSKI
Sbjct: 67  LASHFDYEYVLGHKIAFLCVARGTPRPTITWFKDGVEIFSHLYLHVHEWYIGKDKVKSKI 126

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 127 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 163

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851270|ref|XP_003701157.1| PREDICTED: hemicentin-1-like [Megachile rotundata]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 85/97 (87%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           + SHFD EYVLGHKI F+C+A+G PRPHITWFKDG E+YTH Y+++HEW  G D++KSK+
Sbjct: 65  LASHFDLEYVLGHKIAFLCVARGNPRPHITWFKDGAEIYTHHYLHVHEWQVGPDKVKSKL 124

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
           EIDPATQMDAG+YEC ADNMY++D R+FKTDFSI FD
Sbjct: 125 EIDPATQMDAGVYECTADNMYSIDRRSFKTDFSIAFD 161

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
WB|WBGene00043050	155	oig-4 [Caenorhabditis elegans	0.938	0.587	0.417	9.5e-18
ZFIN|ZDB-GENE-020809-1	1134	robo4 "roundabout homolog 4" [	0.721	0.061	0.367	2e-06
ZFIN|ZDB-GENE-030131-6560	1032	boc "brother of CDO" [Danio re	0.608	0.057	0.397	2.9e-06
UNIPROTKB|F1NTU3	575	NRG2 "Uncharacterized protein"	0.742	0.125	0.355	6e-06
UNIPROTKB|F1NTU2	580	NRG2 "Uncharacterized protein"	0.742	0.124	0.355	6.1e-06
UNIPROTKB|F1NTU1	586	NRG2 "Uncharacterized protein"	0.742	0.122	0.355	6.2e-06
UNIPROTKB|G3N0G5	642	LOC783452 "Uncharacterized pro	0.845	0.127	0.348	1.5e-05
UNIPROTKB|E1BBP3	644	LOC783452 "Uncharacterized pro	0.845	0.127	0.348	1.5e-05
UNIPROTKB|F5GZS7	784	NRG2 "Neuregulin-2" [Homo sapi	0.742	0.091	0.355	1.5e-05
UNIPROTKB|G3N104	650	LOC783452 "Uncharacterized pro	0.845	0.126	0.348	1.5e-05

WB|WBGene00043050 oig-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 38/91 (41%), Positives = 57/91 (62%)

Query:     3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI 62
             SHF   Y LG+K++ IC A+G PRP I W+K+G E+     ++ +E     D I SK+E+
Sbjct:    64 SHFSQTYRLGYKLLIICKARGDPRPTIKWYKEGAEIQPKASIHYYEKPIENDTIWSKLEV 123

Query:    63 DPATQMDAGIYECYADNMYNVDTRTFKTDFS 93
             DPAT  D G+Y C A+N + V  + FK +++
Sbjct:   124 DPATMGDQGVYACVANNPHGVMAKNFKAEYT 154

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

ZFIN|ZDB-GENE-020809-1 robo4 "roundabout homolog 4" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 29/79 (36%), Positives = 40/79 (50%)

Query:     6 DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
             D E  +G      C    G P P++TW KDG+       +N    HY T+ +K K+ I P
Sbjct:   181 DVEVAIGEMATINCSPPVGHPEPNVTWRKDGI------LINSSNEHY-TE-LKGKLIIAP 232

Query:    65 ATQMDAGIYECYADNMYNV 83
             A + D+G+Y C A NM  V
Sbjct:   233 AQKNDSGVYSCIASNMIGV 251

GO:0003674 "molecular_function" evidence=ND

GO:0001525 "angiogenesis" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0035025 "positive regulation of Rho protein signal transduction" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IMP

GO:0035022 "positive regulation of Rac protein signal transduction" evidence=IDA;IMP

GO:0051057 "positive regulation of small GTPase mediated signal transduction" evidence=IMP;IDA

GO:0046847 "filopodium assembly" evidence=IDA

GO:0001954 "positive regulation of cell-matrix adhesion" evidence=IDA

GO:0031226 "intrinsic to plasma membrane" evidence=IDA

GO:0043542 "endothelial cell migration" evidence=IDA

GO:0030032 "lamellipodium assembly" evidence=IDA

ZFIN|ZDB-GENE-030131-6560 boc "brother of CDO" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query:    12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
             G ++V  C+A G P P +TW KDG++L  H   N       T  + S + ID A++ D+G
Sbjct:   250 GQRLVLECVASGIPTPQVTWAKDGLDLRNH---N------NTRFLLSNLLIDAASESDSG 300

Query:    72 IYECYADN 79
              Y C ADN
Sbjct:   301 TYVCLADN 308

GO:0008589 "regulation of smoothened signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007411 "axon guidance" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0042802 "identical protein binding" evidence=IDA

UNIPROTKB|F1NTU3 NRG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query:    11 LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G KI   C A  G P+P   WFKDG EL     + +    YG  +  S+++ +     D
Sbjct:    16 VGEKISLKCEATAGNPQPSYKWFKDGKELKKSKDIRIK---YGNGKKISRLQFNKVKLED 72

Query:    70 AGIYECYADNMYNVDT 85
             AG Y C A+N+   DT
Sbjct:    73 AGEYSCEAENILGKDT 88

GO:0005102 "receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

UNIPROTKB|F1NTU2 NRG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query:    11 LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G KI   C A  G P+P   WFKDG EL     + +    YG  +  S+++ +     D
Sbjct:    16 VGEKISLKCEATAGNPQPSYKWFKDGKELKKSKDIRIK---YGNGKKISRLQFNKVKLED 72

Query:    70 AGIYECYADNMYNVDT 85
             AG Y C A+N+   DT
Sbjct:    73 AGEYSCEAENILGKDT 88

GO:0005102 "receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

UNIPROTKB|F1NTU1 NRG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query:    11 LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G KI   C A  G P+P   WFKDG EL     + +    YG  +  S+++ +     D
Sbjct:    16 VGEKISLKCEATAGNPQPSYKWFKDGKELKKSKDIRIK---YGNGKKISRLQFNKVKLED 72

Query:    70 AGIYECYADNMYNVDT 85
             AG Y C A+N+   DT
Sbjct:    73 AGEYSCEAENILGKDT 88

GO:0005102 "receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

UNIPROTKB|G3N0G5 LOC783452 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 31/89 (34%), Positives = 40/89 (44%)

Query:    11 LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G K    C  A G P P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct:    48 VGEKQSLKCEAAAGNPLPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVKLED 104

Query:    70 AGIYECYADNMYNVDT---RTFKTDFSIT 95
             AG Y C A+N+   DT   R F    S T
Sbjct:   105 AGEYVCEAENILGKDTVRGRLFVNSVSTT 133

GO:0009790 "embryo development" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

UNIPROTKB|E1BBP3 LOC783452 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 31/89 (34%), Positives = 40/89 (44%)

Query:    11 LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G K    C  A G P P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct:    48 VGEKQSLKCEAAAGNPLPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVKLED 104

Query:    70 AGIYECYADNMYNVDT---RTFKTDFSIT 95
             AG Y C A+N+   DT   R F    S T
Sbjct:   105 AGEYVCEAENILGKDTVRGRLFVNSVSTT 133

GO:0009790 "embryo development" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

UNIPROTKB|F5GZS7 NRG2 "Neuregulin-2" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/76 (35%), Positives = 37/76 (48%)

Query:    11 LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G K    C  A G P+P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct:   249 VGEKQSLKCEAAAGNPQPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVKVED 305

Query:    70 AGIYECYADNMYNVDT 85
             AG Y C A+N+   DT
Sbjct:   306 AGEYVCEAENILGKDT 321

GO:0005102 "receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

UNIPROTKB|G3N104 LOC783452 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 31/89 (34%), Positives = 40/89 (44%)

Query:    11 LGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             +G K    C  A G P P   WFKDG EL     + +    YG  R  S+++ +     D
Sbjct:    48 VGEKQSLKCEAAAGNPLPSYRWFKDGKELNRSRDIRIK---YGNGRKNSRLQFNKVKLED 104

Query:    70 AGIYECYADNMYNVDT---RTFKTDFSIT 95
             AG Y C A+N+   DT   R F    S T
Sbjct:   105 AGEYVCEAENILGKDTVRGRLFVNSVSTT 133

GO:0009790 "embryo development" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	97
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-10
smart00409	85	smart00409, IG, Immunoglobulin	4e-10
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-07
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	2e-07
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	7e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-06
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	6e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	7e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	7e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-05
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	3e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	5e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	9e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	3e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-04
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	4e-04
pfam08205	89	pfam08205, C2-set_2, CD80-like C2-set immunoglobul	4e-04
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	4e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	5e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	6e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	7e-04
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.001
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.002
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.003
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.003
cd05866	92	cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-lik	0.004

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.1 bits (137), Expect = 1e-12
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
          +   C+A G P P ITW K+G  L + +   +     GT    S + I   T  D+G Y 
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRS-SRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 75 CYADNMYNVDTRTFK 89
          C A N     + +  
Sbjct: 60 CVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 53.9 bits (130), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  +   C A+G P P+ITW KDG  L                     + I   +  D+G
Sbjct: 2  GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGST---------LTIKSVSLEDSG 52

Query: 72 IYECYADN 79
          +Y C A+N
Sbjct: 53 LYTCVAEN 60

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 52.6 bits (127), Expect = 1e-10
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G    F C   G P P ++WFKDG  L +     +       +     + I      D G
Sbjct: 15 GESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTY-----EGGTYTLTISNVQPDDEG 69

Query: 72 IYECYADNMYNVDTRTFK 89
           Y C A N       + +
Sbjct: 70 KYTCVATNSAGEAEASAE 87

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.0 bits (122), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 18/91 (19%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-------S 58
                G  +   C A G P P +TW+K G            +    + R         S
Sbjct: 3  SVTVKEGESVTLSCEASGSPPPEVTWYKQG-----------GKLLAESGRFSVSRSGSTS 51

Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
           + I   T  D+G Y C A N     +    
Sbjct: 52 TLTISNVTPEDSGTYTCAATNSSGSASSGTT 82

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.0 bits (122), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 18/91 (19%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-------S 58
                G  +   C A G P P +TW+K G            +    + R         S
Sbjct: 3  SVTVKEGESVTLSCEASGSPPPEVTWYKQG-----------GKLLAESGRFSVSRSGSTS 51

Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
           + I   T  D+G Y C A N     +    
Sbjct: 52 TLTISNVTPEDSGTYTCAATNSSGSASSGTT 82

Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 45.7 bits (108), Expect = 5e-08
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D E  +G  + + C A G PRP   W K+G  L +   + +     G  RI +K+ +   
Sbjct: 8  DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA---GDLRI-TKLSLS-- 61

Query: 66 TQMDAGIYECYADNMY 81
             D+G+Y+C A+N +
Sbjct: 62 ---DSGMYQCVAENKH 74

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 6  DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS--KIEI 62
          D +  +G   V  C   +G P P ++W KDG  L      NL        RI     + I
Sbjct: 5  DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPL------NLDNERV---RIVDDGNLLI 55

Query: 63 DPATQMDAGIYECYADNM 80
            A + D G Y+C A NM
Sbjct: 56 AEARKSDEGTYKCVATNM 73

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 43.9 bits (103), Expect = 2e-07
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G +++  C  K  P+P  +W K G EL  +    +  W  G+      +EI   T++D G
Sbjct: 1  GGRVIIECKPKAAPKPKFSWSK-GTELLVNN-SRISIWDDGS------LEILNITKLDEG 52

Query: 72 IYECYADN 79
           Y C+A+N
Sbjct: 53 SYTCFAEN 60

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 42.7 bits (100), Expect = 7e-07
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 18 ICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIEIDPATQMDAGIY 73
          +C A G P P ITWFKD + + T              RIK      ++I+ + + D G Y
Sbjct: 4  LCAASGNPDPEITWFKDFLPVDTT----------SNGRIKQLRSGALQIENSEESDQGKY 53

Query: 74 ECYADN 79
          EC A N
Sbjct: 54 ECVATN 59

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
           G  +   C A G PRP ITW KDG         +     Y   + K  + ++     D+
Sbjct: 8  AGSTVRLKCPASGNPRPTITWLKDGKPF---KKEHRIG-GYKVRKKKWTLILESVVPSDS 63

Query: 71 GIYECYADNMYNVDTRTFKTD 91
          G Y C  +N Y     T+K D
Sbjct: 64 GKYTCIVENKYGSINHTYKVD 84

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 40.2 bits (94), Expect = 6e-06
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 15 IVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY 73
          +V  C A  + P     WFKDG EL         +      +  S+++I+ A   D+G Y
Sbjct: 1  LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIK--IRNKKKNSELQINKAKLADSGEY 58

Query: 74 ECYADNMYNVDTRT 87
           C  +N+   DT T
Sbjct: 59 TCVVENILGNDTVT 72

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 39.8 bits (93), Expect = 7e-06
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  +   C   G P+  +TWFK+G  L     V   E           + I   T  D+G
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDE----NRVSSITLTISNVTPEDSG 56

Query: 72 IYECYA 77
           Y C  
Sbjct: 57 TYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 39.9 bits (93), Expect = 7e-06
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
          C A+G P P ITW KDGV++      ++    Y        + I      D G YEC A 
Sbjct: 5  CSAQGDPEPTITWNKDGVQVTESGKFHISPEGY--------LAIRDVGVADQGRYECVAR 56

Query: 79 N 79
          N
Sbjct: 57 N 57

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEIDPATQM 68
          G  + F+C A+G P+P I W K G +L     H+ ++      GT RI S++ +      
Sbjct: 2  GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS-----SGTLRI-SRVALH----- 50

Query: 69 DAGIYECYADNM 80
          D G YEC A N+
Sbjct: 51 DQGQYECQAVNI 62

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  ++  C  K  P+P I+W K G EL T+    +  W  G+  I +       T+ D G
Sbjct: 1  GGDVIIECKPKAAPKPTISWSK-GTELLTNSS-RICIWPDGSLEILN------VTKSDEG 52

Query: 72 IYECYADN 79
           Y C+A+N
Sbjct: 53 KYTCFAEN 60

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 22 KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
           G+P P +TW KDG  L     V +      T    + + I  A + D+G Y 
Sbjct: 9  SGRPTPTVTWSKDGKPLKLSGRVQIE-----TTASSTSLVIKNAERSDSGKYT 56

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 15 IVFICMAKGKPRPHITWFKDGVE--LYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72
          IV  C AKG P P  +W ++G          V +     GT  I +        +   G 
Sbjct: 1  IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP-DSGTLVIDNMNG--GRAEDYEGE 57

Query: 73 YECYADN 79
          Y+CYA N
Sbjct: 58 YQCYASN 64

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
          + F C   G P P + W K+  EL       L +        KS ++I   T  D G Y 
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDD--------KS-LKIRNVTAGDEGSYT 51

Query: 75 CYADNM 80
          C A+NM
Sbjct: 52 CEAENM 57

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
             C A+G P+P ITW  +GV +      +      G   I S ++ +     D  +Y+C
Sbjct: 5  RLDCEAEGIPQPTITWRLNGVPIEELPP-DPRRRVDGGTLILSNVQPN-----DTAVYQC 58

Query: 76 YADNMY 81
           A N++
Sbjct: 59 NASNVH 64

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          +G  +   C+A G PRP ITW KD   L       + E    + + K  + +      D+
Sbjct: 8  VGSSVRLKCVASGNPRPDITWLKDNKPLTPT---EIGE----SRKKKWTLSLKNLKPEDS 60

Query: 71 GIYECYADNMYNVDTRTFKTD 91
          G Y C+  N       T+K D
Sbjct: 61 GKYTCHVSNRAGEINATYKVD 81

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
          IVF C   GKP P + W K+G  +    Y  + + H         +++    + D G Y+
Sbjct: 2  IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--------NLQVLGLVKSDEGFYQ 53

Query: 75 CYADN 79
          C A+N
Sbjct: 54 CIAEN 58

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
          C A+G P P +TW K+G+++   +   L     G++   S +  +     D G Y C A 
Sbjct: 5  CHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYE-----DTGAYTCIAK 59

Query: 79 NMYNVD 84
          N   VD
Sbjct: 60 NEAGVD 65

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 22 KGKPRPHITWFKDGVEL--YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79
          +G P+P +TW+ +G  L    ++   +H            ++ D  T ++ G Y   A N
Sbjct: 8  RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASN 67

Query: 80 MYNVDTRT 87
           Y  D+++
Sbjct: 68 EYGQDSKS 75

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          LG  +   C A G P P +TW KDG  + +       E  Y  +   S++ I    ++D 
Sbjct: 17 LGQSVTLACDADGFPEPTMTWTKDGEPIES------GEEKYSFNEDGSEMTILDVDKLDE 70

Query: 71 GIYECYADN 79
            Y C A+N
Sbjct: 71 AEYTCIAEN 79

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 22/75 (29%)

Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT---------- 66
            C A+G+P P I W K+G  L T             D    +I +   +          
Sbjct: 21 LNCKAEGRPTPTIQWLKNGQPLETD----------KDDPRSHRIVLPSGSLFFLRVVHGR 70

Query: 67 --QMDAGIYECYADN 79
            + D G+Y C A N
Sbjct: 71 KGRSDEGVYVCVAHN 85

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM-DAGI 72
          K++  C A+G P P   W ++G E+ T       E  Y    I   + I   +++ D+G 
Sbjct: 21 KVILNCEARGNPVPTYRWLRNGTEIDT-------ESDYRYSLIDGNLIISNPSEVKDSGR 73

Query: 73 YECYADNMY 81
          Y+C A N  
Sbjct: 74 YQCLATNSI 82

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 14 KIVFICMAK-GKPRPHITWFKDGVELYTHM 42
          ++V  C +  GKP P ITW+ DG EL    
Sbjct: 16 EVVATCSSAGGKPAPRITWYLDGRELEAIT 45

These domains belong to the immunoglobulin superfamily. Length = 89

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 8  EYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
          E  +G    F+C   G+P+  I+WF  +G +L T   +++   +   D ++S + I  A 
Sbjct: 11 EISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVV-QN---DDVRSTLTIYNAN 65

Query: 67 QMDAGIYECYADN 79
            DAGIY+C A +
Sbjct: 66 IEDAGIYKCVATD 78

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
          C+A+G P P I+W K G EL               +     ++ID  ++ D G Y C A 
Sbjct: 5  CIAEGLPTPEISWIKIGGELPAD--------RTKFENFNKTLKIDNVSEEDDGEYRCTAS 56

Query: 79 NMYNVDTRTF 88
          N       T 
Sbjct: 57 NSLGSARHTI 66

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 12 GHKIVFICMAKGKPRPHITWFKD--GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
          G  +   C   G P P + WFK+   +EL  H  V L +  Y +  IK        T  D
Sbjct: 16 GKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKG------VTSED 69

Query: 70 AGIYECYADNMYNVDT 85
          +G Y     N Y  +T
Sbjct: 70 SGKYSINVKNKYGGET 85

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 15/68 (22%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  +   C A G P P+ TW+KDGV L +                   +  +     D+G
Sbjct: 14 GEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ----------NGFFTPNVSAE-----DSG 58

Query: 72 IYECYADN 79
           Y C A N
Sbjct: 59 TYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 12 GHKIVFICMAKGKPRPHITWFK--DGVELY----THMYVNLHEWHYGTDRIKSKIEIDPA 65
          G    F C   G+P P ITW K   G E       H+  N+   + G      ++ I  A
Sbjct: 1  GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIG------QLVIYNA 54

Query: 66 TQMDAGIYECYADN 79
             DAG+Y C A N
Sbjct: 55 QPQDAGLYTCTARN 68

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY---GTDRIKSKIEIDPATQMDA 70
          K+   C A+G P P   W  +G E+         +  Y   G + + S    +P+   DA
Sbjct: 21 KVSLNCRARGSPPPTYRWLMNGTEIDD-----EPDSRYSLVGGNLVIS----NPSKAKDA 71

Query: 71 GIYECYADNMY 81
          G Y+C A N+ 
Sbjct: 72 GRYQCLASNIV 82

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 11 LGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           G  +   C A G P P I W K DG    +                 + ++I      D
Sbjct: 15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE----------ISMSGAVLKIPNIQFED 64

Query: 70 AGIYECYADNMYNVDT 85
           G YEC A+N+   DT
Sbjct: 65 EGTYECEAENIKGKDT 80

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 12 GHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          G  + FIC AK K P   + W + G  L +       +++         + I      DA
Sbjct: 16 GADVSFICRAKSKSPAYTLVWTRVGGGLPS----RAMDFN-------GILTIRNVQLSDA 64

Query: 71 GIYECYADNMYNVD 84
          G Y C   NM + D
Sbjct: 65 GTYVCTGSNMLDTD 78

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 38/81 (46%)

Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI---DPATQMD---- 69
           IC A G P+P I+W  +GV                       IEI   DP+ ++D    
Sbjct: 6  LICRANGNPKPSISWLTNGV----------------------PIEIAPTDPSRKVDGDTI 43

Query: 70 ---------AGIYECYADNMY 81
                   + +Y+C A N Y
Sbjct: 44 IFSKVQERSSAVYQCNASNEY 64

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 28/73 (38%)

Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTD-------RIKSKIE-----IDPAT 66
          C A G P P I W KDG                GTD       R+    E     I    
Sbjct: 5  CAATGHPTPQIAWQKDG----------------GTDFPAARERRMHVMPEDDVFFIVDVK 48

Query: 67 QMDAGIYECYADN 79
            D G+Y C A N
Sbjct: 49 IEDTGVYSCTAQN 61

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 8  EYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
          E  +G    F C A G+P   I W+   G ++ +   V + +     + ++S++ I  A 
Sbjct: 11 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK-----EGVRSRLTIYNAN 64

Query: 67 QMDAGIYECYA 77
            DAGIY C A
Sbjct: 65 IEDAGIYRCQA 75

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.86
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.86
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.85
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.84
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.83
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.82
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.82
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.82
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.82
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.82
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.81
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.81
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.81
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.81
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.81
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.81
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.8
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.8
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.8
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.79
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.79
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.79
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.79
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.79
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.79
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.79
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.78
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.78
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.78
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.78
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.78
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.77
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.77
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.77
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.77
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.77
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.77
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.76
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.75
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.75
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.75
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.75
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.74
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.73
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.73
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.73
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.73
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.72
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.71
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.71
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.71
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.71
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.71
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.71
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.7
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.7
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.69
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.69
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.68
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.68
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.68
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.67
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.67
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.67
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.67
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.66
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.66
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.65
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.65
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.64
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.64
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.63
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.61
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.61
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.6
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.59
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.59
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.58
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.58
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.57
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.57
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.57
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.56
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.56
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.55
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.55
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.52
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.5
KOG3513|consensus	1051		99.49
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.46
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.45
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.44
smart00409	86	IG Immunoglobulin.	99.43
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.43
KOG4194|consensus	873		99.43
PHA02826	227	IL-1 receptor-like protein; Provisional	99.42
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.42
KOG3513|consensus	1051		99.41
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.39
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.39
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.39
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.37
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.36
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.34
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.33
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.32
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.31
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.29
KOG4221|consensus	1381		99.29
PHA02785	326	IL-beta-binding protein; Provisional	99.28
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.21
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.2
PHA02785	326	IL-beta-binding protein; Provisional	99.15
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.15
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.11
PHA02826	227	IL-1 receptor-like protein; Provisional	99.1
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.09
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	99.06
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.05
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	99.02
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.01
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.99
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.99
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.97
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.97
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.95
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.94
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.94
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.94
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.93
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.92
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.91
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.9
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.88
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.88
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.86
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.85
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.85
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.82
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.8
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.79
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.77
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.76
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.75
KOG4194|consensus	873		98.75
KOG4221|consensus	1381		98.75
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.74
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.72
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.72
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.71
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.7
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.69
KOG4222|consensus	1281		98.63
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.62
smart00407	75	IGc1 Immunoglobulin C-Type.	98.61
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.59
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.55
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.54
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.53
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.53
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.53
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.52
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.5
KOG4222|consensus	1281		98.49
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.46
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.45
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.42
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.42
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.4
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.39
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.38
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.35
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.33
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.32
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.31
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.3
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.29
PHA03376	221	BARF1; Provisional	98.27
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.26
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.16
smart00406	81	IGv Immunoglobulin V-Type.	98.0
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.97
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.92
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.83
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.71
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.68
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.67
PHA02633	63	hypothetical protein; Provisional	97.61
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.31
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.92
KOG1480|consensus	909		96.66
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.56
PHA03042	286	CD47-like protein; Provisional	96.46
KOG3515|consensus	741		96.43
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.3
KOG4597|consensus	560		96.3
KOG3515|consensus	741		95.94
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.67
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.66
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	95.6
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.38
PHA03052	69	Hypothetical protein; Provisional	94.79
PHA02865	338	MHC-like TNF binding protein; Provisional	94.73
PHA02982	251	hypothetical protein; Provisional	92.92
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.31
PHA03271	490	envelope glycoprotein C; Provisional	91.96
PHA03270	466	envelope glycoprotein C; Provisional	91.84
PHA03269	566	envelope glycoprotein C; Provisional	91.78
PHA03273	486	envelope glycoprotein C; Provisional	90.73
PHA03376	221	BARF1; Provisional	84.02

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.86  E-value=6.8e-20  Score=87.74  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=73.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....+.....     ....+.|.|..+...|.|.|.|.+.|..|
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~-----~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN-----TENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe-----cCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            3467889999999999999999999999999999987554443321     11246799999999999999999999999


Q ss_pred             ceeEEEEEEEEEee
Q psy9150          83 VDTRTFKTDFSITF   96 (97)
Q Consensus        83 ~~~~~~~~~~~~~~   96 (97)
                      ...+.+.|.|..-+
T Consensus        81 ~~~~~~~l~V~~~P   94 (98)
T cd05762          81 SRQAQVNLTVVDKP   94 (98)
T ss_pred             ceeEEEEEEEecCC
Confidence            99999988887543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.86  E-value=9.6e-20  Score=87.49  Aligned_cols=90  Identities=20%  Similarity=0.271  Sum_probs=70.4

Q ss_pred             ceeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...+.+.+|+.+.|.|.+.| .|+|.+.|+++|.++....................+|.|..++.+|.|.|+|.+.|..|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            35778899999999999999 89999999999999875432211110001123457899999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            99888888764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.85  E-value=9.8e-20  Score=86.37  Aligned_cols=86  Identities=19%  Similarity=0.298  Sum_probs=69.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.....   .. ....+|.|..+...|+|.|.|.+.|..|
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~---~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKV---EQ-GKYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEE---cC-CCEEEEEEccCChhhCEEEEEEEEECCC
Confidence            4567889999999999999999999999999999887554443321   11 1134799999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .....+.|.+
T Consensus        83 ~~~~~~~v~v   92 (92)
T cd05737          83 GETVDVTVSV   92 (92)
T ss_pred             cceEEEEEeC
Confidence            9988876653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.84  E-value=7.6e-19  Score=82.30  Aligned_cols=83  Identities=20%  Similarity=0.280  Sum_probs=67.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .+....     .......|.|..+...|.|.|.|.+.|..|.
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~-----~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~   77 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVE-----SYKDLSSFVIEGAEREDEGVYTITVTNPVGE   77 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEE-----EcCCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence            3677899999999999999999999999999988643 233221     1112467999999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        78 ~~~~~~l~V   86 (86)
T cd05894          78 DHASLFVKV   86 (86)
T ss_pred             EEEEEEEEC
Confidence            988877653

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.83  E-value=3.1e-19  Score=83.99  Aligned_cols=80  Identities=24%  Similarity=0.369  Sum_probs=65.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........     .    ...|.|..+..+|.|.|.|.+.|..|.
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~   78 (88)
T cd05851           8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-----S----GAVLKIFNIQPEDEGTYECEAENIKGK   78 (88)
T ss_pred             cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-----C----CCEEEECcCChhhCEEEEEEEEcCCCc
Confidence            4577889999999999999999999999998876654322211     1    247999999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.|
T Consensus        79 ~~~~~~l~V   87 (88)
T cd05851          79 DKHQARVYV   87 (88)
T ss_pred             eEEEEEEEE
Confidence            888777654

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.82  E-value=8.7e-19  Score=84.24  Aligned_cols=88  Identities=24%  Similarity=0.292  Sum_probs=68.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEE-EecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEW-HYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+..|..+.|.|.+.|.|.|.+.|+++|.++........... ........++|.|..+..+|.|.|+|.+.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            56777889999999999999999999999999875442211100 00112235689999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.+.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            988888764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.82  E-value=3.5e-19  Score=81.38  Aligned_cols=74  Identities=27%  Similarity=0.475  Sum_probs=61.0

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      +|+.+.|.|.+.|.|.|.+.|++++..+.........        ...+|.|..+...|.|.|.|.+.|..|.......|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            5889999999999999999999999887654332221        13479999999999999999999999998887766


Q ss_pred             EE
Q psy9150          91 DF   92 (97)
Q Consensus        91 ~~   92 (97)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            53

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.82  E-value=1.4e-18  Score=79.87  Aligned_cols=76  Identities=25%  Similarity=0.529  Sum_probs=59.0

Q ss_pred             EEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        17 l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.+.|.|.|.+.|+++|..+....+................|.|..+...|.|.|.|.|.|..|.....+.+.+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f   78 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF   78 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence            5788999999999999999999765433221111112223568999999999999999999999999999888765

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.82  E-value=3.4e-18  Score=80.41  Aligned_cols=84  Identities=23%  Similarity=0.326  Sum_probs=65.6

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      |+.+.|.|.+.|.|++.+.|++++..+.... ++..... .......+.|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            6789999999999999999999998775432 2222211 1122335689999999999999999999999999999888


Q ss_pred             EEEEee
Q psy9150          91 DFSITF   96 (97)
Q Consensus        91 ~~~~~~   96 (97)
                      .+..-+
T Consensus        80 ~V~~~P   85 (88)
T cd05735          80 TVQEPP   85 (88)
T ss_pred             EEeCCC
Confidence            876544

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.82  E-value=2.2e-18  Score=81.70  Aligned_cols=87  Identities=18%  Similarity=0.305  Sum_probs=69.4

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+....++....   ... ...+|.|..+..+|.|.|.|.+.|..
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~---~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~   81 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL---EQG-KYASLTIKGVTSEDSGKYSINVKNKY   81 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE---cCC-CEEEEEECCCChhhCEEEEEEEEeCC
Confidence            35678899999999999999999999999999998876544333211   111 12479999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.|.+
T Consensus        82 G~~~~~~~v~~   92 (92)
T cd05891          82 GGETVDVTVSV   92 (92)
T ss_pred             CceeeEEEEEC
Confidence            99988876653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.81  E-value=1.3e-18  Score=81.41  Aligned_cols=80  Identities=25%  Similarity=0.476  Sum_probs=67.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....+....         ...|.|..+...|.|.|.|.+.|..|
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---------AGDLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---------CCEEEEeeCCHHHCEEEEEEEECCCC
Confidence            456788899999999999999999999999999988654433321         34789999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy9150          83 VDTRTFKTD   91 (97)
Q Consensus        83 ~~~~~~~~~   91 (97)
                      .......|.
T Consensus        76 ~~~~~~~l~   84 (85)
T cd05728          76 TIYASAELA   84 (85)
T ss_pred             eEEEEEEEE
Confidence            988877665

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.81  E-value=3.7e-18  Score=81.40  Aligned_cols=83  Identities=23%  Similarity=0.390  Sum_probs=67.5

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .++.+..|+.+.|.|.+.|.|.|.+.|++++..+... ......     .  ....|.|..+...|.|.|.|.+.|..|.
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~-----~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN-----E--DGSEMTILDVDKLDEAEYTCIAENKAGE   83 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe-----C--CCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence            4567889999999999999999999999999887654 222111     1  1346999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.|.+
T Consensus        84 ~~~~~~L~V~~   94 (95)
T cd05730          84 QEAEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEEEe
Confidence            98888887753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.81  E-value=9.6e-19  Score=79.62  Aligned_cols=73  Identities=25%  Similarity=0.495  Sum_probs=60.2

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+..+.    .    ..+|.|..+..+|.|.|.|.+.|..|.......|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~----~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW----D----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc----C----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            578999999999999999999999877544433321    1    24799999999999999999999999998887765


Q ss_pred             E
Q psy9150          92 F   92 (97)
Q Consensus        92 ~   92 (97)
                      +
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            3

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.81  E-value=3.9e-18  Score=80.57  Aligned_cols=84  Identities=17%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.........     .......|.|..+...|.|.|.|.+.|..|
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G   80 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPVG   80 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence            455667899999999999999999999999999877543321111     111245799999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy9150          83 VDTRTFKTD   91 (97)
Q Consensus        83 ~~~~~~~~~   91 (97)
                      .......|.
T Consensus        81 ~~~~~~~L~   89 (90)
T cd04972          81 QANVSVQVT   89 (90)
T ss_pred             ceeEEEEEe
Confidence            988877665

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.81  E-value=8.5e-19  Score=78.35  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      +.|.|.+.|.|.|.+.|+++|..+....             ....|.|..+..+|.|.|+|.+.|..|...+.+.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            3689999999999999999999885321             13479999999999999999999999988887777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.81  E-value=4.8e-18  Score=80.57  Aligned_cols=82  Identities=22%  Similarity=0.393  Sum_probs=67.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....+..+..     .....+|.|..+..+|.|.|.|.+.|..|.
T Consensus        10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   84 (92)
T cd05747          10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYTVVVENSEGK   84 (92)
T ss_pred             CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEEEEEEcCCCC
Confidence            457889999999999999999999999999998876544433321     111458999999999999999999999999


Q ss_pred             eeEEEEE
Q psy9150          84 DTRTFKT   90 (97)
Q Consensus        84 ~~~~~~~   90 (97)
                      ....+.|
T Consensus        85 ~~~~~~l   91 (92)
T cd05747          85 QEAQFTL   91 (92)
T ss_pred             EeEEEEe
Confidence            8887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.80  E-value=1.1e-17  Score=78.18  Aligned_cols=83  Identities=22%  Similarity=0.416  Sum_probs=64.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+............    .....|.|..+...|.|.|.|.+.|..|...
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            345788999999999999999999999999887654322111100    0134688999999999999999999999999


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05857          79 HTYHLDV   85 (85)
T ss_pred             EEEEEEC
Confidence            8887754

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.80  E-value=3.5e-18  Score=78.07  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=58.2

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+..    ......+|.|..+...|.|.|.|.+.|..|.......|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~----~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ----DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE----cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            368999999999999999999988643 3333321    1111247999999999999999999999999988877653

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.80  E-value=5.2e-18  Score=77.84  Aligned_cols=74  Identities=20%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...... ...       .....|.|..++..|.|.|.|.+.|..|.....+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-------VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-------eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            678999999999999999999999887643211 110       013479999999999999999999999999888877


Q ss_pred             EE
Q psy9150          91 DF   92 (97)
Q Consensus        91 ~~   92 (97)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.79  E-value=7.2e-18  Score=77.01  Aligned_cols=73  Identities=23%  Similarity=0.353  Sum_probs=59.3

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+....+.....     ......|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-----TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-----CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            6789999999999999999999886544433321     112567999999999999999999999999988887653

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.79  E-value=1.7e-18  Score=78.10  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=55.6

Q ss_pred             EEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        16 ~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .+.|.+.|.|.|.+.|++++.++.......          ....|.|..+..+|.|.|.|.+.|..|.......+.+.
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEEc----------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            688999999999999999999886542211          02469999999999999999999999987776666654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.79  E-value=2.5e-18  Score=77.93  Aligned_cols=70  Identities=20%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      +.|.|.+.|.|.|.+.|+++|..+........     .    ..+|.|..+...|+|.|+|.+.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----S----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----C----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            36889999999999999999998875432211     1    3579999999999999999999999998888877765

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.79  E-value=1.3e-17  Score=79.62  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=64.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....................|.|..+..+|.|.|.|.+.|..|..
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (96)
T cd05732           9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD   88 (96)
T ss_pred             CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence            46778899999999999999999999999886554221100000011112224689999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.|.+
T Consensus        89 ~~s~~l~v   96 (96)
T cd05732          89 QQSMYLEV   96 (96)
T ss_pred             EEEEEEeC
Confidence            88776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.79  E-value=1.3e-17  Score=79.49  Aligned_cols=85  Identities=26%  Similarity=0.464  Sum_probs=64.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCC-CeeEEEe-CCEEccc-cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPR-PHITWFK-DGVELYT-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..+....    .......+|.|..++.+|.|.|+|.+.|.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            45567889999999999999984 7999998 6765543 2222221    11222468999999999999999999999


Q ss_pred             C-CceeEEEEEEE
Q psy9150          81 Y-NVDTRTFKTDF   92 (97)
Q Consensus        81 ~-g~~~~~~~~~~   92 (97)
                      . |.....+.|.+
T Consensus        83 ~~g~~~~s~~l~v   95 (96)
T cd05865          83 DEGESEATVNVKI   95 (96)
T ss_pred             CCCcEEEEEEEEE
Confidence            7 77888777664

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.79  E-value=1.9e-17  Score=76.73  Aligned_cols=76  Identities=22%  Similarity=0.491  Sum_probs=58.4

Q ss_pred             EEEEecccCCCeeEEEeCCEEccccceeeEEEEEe--cCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY--GTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        17 l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.+.|.|.|.+.|+++|..+.............  ........|.|..+...|.|.|+|.+.|..|.....+.+.+
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            67999999999999999999987654322111000  11223557999999999999999999999999999887764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.79  E-value=1.7e-17  Score=78.13  Aligned_cols=80  Identities=25%  Similarity=0.395  Sum_probs=64.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........         ....|.|..++.+|.|.|.|.+.|..|.
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM---------SGAVLKIPNIQFEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE---------eCCEEEECCCCcccCEEEEEEEEECCCc
Confidence            3567788999999999999999999999998765543322211         1357999999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.|
T Consensus        79 ~~~~~~l~V   87 (88)
T cd04968          79 DTHQGRIYV   87 (88)
T ss_pred             EEEEEEEEE
Confidence            888776654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.78  E-value=1.7e-17  Score=79.40  Aligned_cols=85  Identities=22%  Similarity=0.316  Sum_probs=61.7

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|..+...|.|.|.|.+.|..|.....
T Consensus        13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence            34457999999999999999999999887664321100000001111224579999999999999999999999999888


Q ss_pred             EEEEE
Q psy9150          88 FKTDF   92 (97)
Q Consensus        88 ~~~~~   92 (97)
                      +.|.|
T Consensus        93 ~~l~v   97 (97)
T cd05869          93 MYLEV   97 (97)
T ss_pred             EEEEC
Confidence            87653

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.78  E-value=1.4e-17  Score=78.54  Aligned_cols=85  Identities=26%  Similarity=0.425  Sum_probs=71.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.++.+..|+.+.|.|.+.+.|.|.+.|++++..+....+......     ....+|.|..+...|.|.|.|.+.|..|
T Consensus         6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD-----GGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE-----TTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc-----cceeEEccCCCChhhCEEEEEEEEECCC
Confidence            34688899999999999999999999999999999987655544321     1367899999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9988887764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.78  E-value=1.4e-17  Score=75.50  Aligned_cols=70  Identities=23%  Similarity=0.522  Sum_probs=56.2

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+....+.....        ...+.+..+..+|.|.|.|.+.|..|.......|.|
T Consensus         2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            6789999999999999999998876544333211        235777899999999999999999999888776653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.78  E-value=1.5e-17  Score=75.98  Aligned_cols=74  Identities=28%  Similarity=0.387  Sum_probs=57.5

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+... .+..+..    .......|.|..+..+|.|.|.|.+.|..|.......|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            368999999999999999999888643 2333321    1111336999999999999999999999999988777653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.78  E-value=1.2e-17  Score=77.56  Aligned_cols=80  Identities=28%  Similarity=0.456  Sum_probs=63.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+....|+.+.|.|.+.|.|.|.+.|++++..+........       ......|.|..+..+|.|.|.|.+.|..|...
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   75 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN   75 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence            45677899999999999999999999999887653321111       11135799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.|
T Consensus        76 ~~~~v~v   82 (82)
T cd05856          76 ATYKVDV   82 (82)
T ss_pred             EEEEEeC
Confidence            8877653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.77  E-value=2.6e-17  Score=75.33  Aligned_cols=74  Identities=24%  Similarity=0.292  Sum_probs=57.5

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+... .+..+..    ......+|.|..++..|.|.|.|.+.|..|.......|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            368999999999999999999988643 2332221    1111346999999999999999999999999988876653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.77  E-value=2.1e-17  Score=75.80  Aligned_cols=75  Identities=23%  Similarity=0.441  Sum_probs=59.1

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.........  ...    ...|.+..+...|.|.|.|.+.|..|.......|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~--~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR--KVD----GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE--Eec----CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            567899999999999999999999887532211110  001    23688899999999999999999999999888776


Q ss_pred             E
Q psy9150          92 F   92 (97)
Q Consensus        92 ~   92 (97)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            5

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.77  E-value=2.2e-17  Score=76.28  Aligned_cols=77  Identities=25%  Similarity=0.450  Sum_probs=62.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.+|+.+.|.|.+.+. .+.+.|+++|..+....+....         ...|.|..+..+|+|.|.|.+.|..|..
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence            45678899999999999885 5789999999888654443321         2379999999999999999999999987


Q ss_pred             eEEEEEE
Q psy9150          85 TRTFKTD   91 (97)
Q Consensus        85 ~~~~~~~   91 (97)
                      ...+.|.
T Consensus        72 ~~~~~v~   78 (79)
T cd04973          72 TTYFSVN   78 (79)
T ss_pred             cEEEEEe
Confidence            7776654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.77  E-value=1.5e-17  Score=75.75  Aligned_cols=73  Identities=26%  Similarity=0.505  Sum_probs=60.0

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+....    .    ...|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~----~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW----P----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC----C----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            678999999999999999999999887654433321    1    24699999999999999999999999998887665


Q ss_pred             E
Q psy9150          92 F   92 (97)
Q Consensus        92 ~   92 (97)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            3

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.77  E-value=2.1e-17  Score=76.18  Aligned_cols=77  Identities=22%  Similarity=0.349  Sum_probs=60.2

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+....     .......|.|..+...|.|.|.|.+.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT-----SEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE-----ECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            678999999999999999999998877654433321     111245799999999999999999999999887665554


Q ss_pred             EE
Q psy9150          92 FS   93 (97)
Q Consensus        92 ~~   93 (97)
                      ++
T Consensus        76 ~~   77 (78)
T cd05743          76 LT   77 (78)
T ss_pred             EE
Confidence            43

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.77  E-value=3e-17  Score=78.67  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=62.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcccc-----ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTH-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      .++.+.+|+.+.|.|.+.|.|.|.+.|++  ++..+...     .++..     ........|.|..+..+|.|.|.|.+
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v-----~~~~~~~~L~I~~v~~~D~G~Y~C~A   83 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV-----KGQHGESSLHIKDVKLSDSGRYDCEA   83 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE-----eecCCeeEEEEeeCCcCCCEEEEEEE
Confidence            46788899999999999999999999998  44433211     11211     11112357999999999999999999


Q ss_pred             EcCCCceeEEEEEEE
Q psy9150          78 DNMYNVDTRTFKTDF   92 (97)
Q Consensus        78 ~~~~g~~~~~~~~~~   92 (97)
                      .|..|.....+.|.|
T Consensus        84 ~N~~G~~~~~~~l~~   98 (98)
T cd05870          84 ASRIGGHQKSMYLDI   98 (98)
T ss_pred             eccCCcceeEEEEeC
Confidence            999999888776653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.76  E-value=3.4e-17  Score=75.08  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      |+.+.|.|.+.|.|.|.+.|++++..+.........      ......|.|..++..|.|.|.|.+.|..|.....+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR------RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE------EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            678999999999999999999999887654321000      01135799999999999999999999999998888776


Q ss_pred             E
Q psy9150          92 F   92 (97)
Q Consensus        92 ~   92 (97)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            5

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.75  E-value=5.7e-17  Score=74.53  Aligned_cols=74  Identities=26%  Similarity=0.538  Sum_probs=55.1

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      +.|.|.+.|.|.|.+.|+++|..+.... .....    .   ....|.|..+..+|.|.|.|.+.|..|.......+.+.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~----~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS----S---KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe----C---CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            3689999999999999999998875432 11111    1   12478999999999999999999999987554444444


Q ss_pred             Ee
Q psy9150          94 IT   95 (97)
Q Consensus        94 ~~   95 (97)
                      ++
T Consensus        74 v~   75 (77)
T cd05760          74 II   75 (77)
T ss_pred             Ee
Confidence            43

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.75  E-value=7.7e-17  Score=72.61  Aligned_cols=68  Identities=24%  Similarity=0.436  Sum_probs=52.8

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      |+.+.|.|.+.|.|.|.+.|++++..+........         ....|.|..+.  |.|.|.|.+.|..|.......|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            57899999999999999999999988754332211         12357777764  7899999999999988776654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.75  E-value=3.4e-17  Score=74.20  Aligned_cols=70  Identities=21%  Similarity=0.425  Sum_probs=55.4

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+..... ...       .....|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL-------NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE-------cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            36889999999999999998876643221 110       11357999999999999999999999999888877665

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.75  E-value=2.5e-17  Score=74.26  Aligned_cols=68  Identities=29%  Similarity=0.527  Sum_probs=55.4

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      +.|.|.+.|.|.|.+.|++++..+....+....     .   ...|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-----~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS-----P---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC-----C---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            368999999999999999999887654433221     1   3479999999999999999999999998877655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.74  E-value=2.9e-16  Score=76.52  Aligned_cols=85  Identities=20%  Similarity=0.240  Sum_probs=64.0

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCceeEEE
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      .|..+.|.|.+.|.|.|.+.|++++..+... .+...... .......+.|.|..+. ..|.|.|.|.+.|..|.....+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            5678999999999999999999999888642 22222111 1112224679999987 5899999999999999998888


Q ss_pred             EEEEEEee
Q psy9150          89 KTDFSITF   96 (97)
Q Consensus        89 ~~~~~~~~   96 (97)
                      .|.+..-+
T Consensus       101 ~L~~~~~p  108 (109)
T cd05773         101 QLVSTSRP  108 (109)
T ss_pred             EEEecCCC
Confidence            88776543

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.73  E-value=1.1e-16  Score=72.15  Aligned_cols=68  Identities=26%  Similarity=0.426  Sum_probs=54.2

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      +.|.|.+.|.|.|.+.|++++..+.... ....        ....|.|..+..+|.|.|.|.+.|..|.......|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGR-AEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCc-EEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            3689999999999999999877664322 2221        134799999999999999999999999988877664

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.73  E-value=2.2e-16  Score=74.56  Aligned_cols=76  Identities=22%  Similarity=0.415  Sum_probs=59.4

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      |+.+.|.|.+.|.|.|.+.|++++..+..        ..++..     ..   ...|.|..++.+|.|.|.|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-----~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-----SQ---TGDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-----CC---CCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            67899999999999999999998754311        111111     10   236999999999999999999999999


Q ss_pred             eeEEEEEEEEEe
Q psy9150          84 DTRTFKTDFSIT   95 (97)
Q Consensus        84 ~~~~~~~~~~~~   95 (97)
                      ....+.|.|...
T Consensus        73 ~~~~~~l~V~~~   84 (90)
T cd05726          73 ILTKAYLEVTDV   84 (90)
T ss_pred             eEEEEEEEEeec
Confidence            998888888753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.73  E-value=2.8e-16  Score=71.71  Aligned_cols=73  Identities=26%  Similarity=0.480  Sum_probs=56.9

Q ss_pred             CCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+.........    .    ..+|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY----D----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe----c----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999999999999997 66655443322211    1    2468888999999999999999999998887766


Q ss_pred             EE
Q psy9150          91 DF   92 (97)
Q Consensus        91 ~~   92 (97)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            53

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.73  E-value=4.3e-16  Score=73.70  Aligned_cols=83  Identities=28%  Similarity=0.512  Sum_probs=62.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ++.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+....+....     .......|.|..+..+|.|.|+|.+.|..
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~-----~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~   79 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ-----KEGVRSRLTIYNANIEDAGIYRCQATDAK   79 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE-----eCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence            346778899999999999999887 899998 46666543333321     11123479999999999999999999999


Q ss_pred             Cce-eEEEEEE
Q psy9150          82 NVD-TRTFKTD   91 (97)
Q Consensus        82 g~~-~~~~~~~   91 (97)
                      |.. .+.+.|.
T Consensus        80 G~~~~~~i~l~   90 (92)
T cd05866          80 GQTQEATVVLE   90 (92)
T ss_pred             CcEEEEEEEEE
Confidence            986 4555554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.72  E-value=3.6e-16  Score=73.93  Aligned_cols=79  Identities=19%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.+|+.+.|.|.+.|. .|.+.|++++..+.... ..+.     .  ...+|.|..++..|.|.|.|.+.|..|..
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~-----~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLS-----N--DNRTLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEe-----C--CCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence            45678899999999999999 99999999998875432 2211     1  13479999999999999999999999985


Q ss_pred             -eEEEEEEE
Q psy9150          85 -TRTFKTDF   92 (97)
Q Consensus        85 -~~~~~~~~   92 (97)
                       ...+.|.|
T Consensus        82 ~S~~~~L~V   90 (91)
T cd05740          82 TSDPYILNV   90 (91)
T ss_pred             EeeeEEEEe
Confidence             44665554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.71  E-value=1.4e-15  Score=72.91  Aligned_cols=89  Identities=24%  Similarity=0.357  Sum_probs=59.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecCc-eEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGTD-RIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|+++|..+...... .......... .....+....+..+|.|.|.|.+.|..
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~   87 (100)
T cd07693           8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL   87 (100)
T ss_pred             CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence            45778889999999999999999999999999887652100 0000000111 111122223346899999999999999


Q ss_pred             Cc-eeEEEEEEE
Q psy9150          82 NV-DTRTFKTDF   92 (97)
Q Consensus        82 g~-~~~~~~~~~   92 (97)
                      |. ..+...|.+
T Consensus        88 G~~~s~~~~l~v   99 (100)
T cd07693          88 GEAVSRNASLEV   99 (100)
T ss_pred             cceecceEEEEe
Confidence            98 566665554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.71  E-value=2.9e-15  Score=71.76  Aligned_cols=85  Identities=21%  Similarity=0.252  Sum_probs=64.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCC-CEEEEEEEEcC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADNM   80 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~~   80 (97)
                      ....+.+|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+.... ......++|.|..+..+| .|.|.|.+.|.
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEEcC
Confidence            35567899999999999999999 59999999887643  233332211 112334679999999855 89999999999


Q ss_pred             CCceeEEEEE
Q psy9150          81 YNVDTRTFKT   90 (97)
Q Consensus        81 ~g~~~~~~~~   90 (97)
                      .|.....+.|
T Consensus        88 ~G~~~~~~~L   97 (98)
T cd05758          88 FGSGTAIISL   97 (98)
T ss_pred             CCcccEEEEe
Confidence            9998877654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.71  E-value=2.1e-16  Score=71.54  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             EEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          16 VFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        16 ~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      .|.|.+.|.|.|.+.|++++.++.... ....     .    ..+|.|.++..+|.|.|+|.+.|........+.+.+
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-----~----~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-----D----GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-----C----CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            688999999999999999998876532 1111     1    237999999999999999999998777766665554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.71  E-value=2.7e-16  Score=71.95  Aligned_cols=71  Identities=24%  Similarity=0.377  Sum_probs=53.4

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEcccc---ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTH---MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      +.|.|.+.|.|.|.+.|++++......   .+....    .   ....|.|..+..+|.|.|.|.+.|..|.......|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~----~---~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM----P---EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe----c---CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            368899999999999999987642211   111110    0   123689999999999999999999999988877766


Q ss_pred             E
Q psy9150          92 F   92 (97)
Q Consensus        92 ~   92 (97)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            5

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.71  E-value=9.3e-16  Score=71.80  Aligned_cols=80  Identities=28%  Similarity=0.497  Sum_probs=62.2

Q ss_pred             CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      .+.++.+..|+.+.|.|.+ .+.|.|.+.|++++..+.... .....    .    ...|.|..+...|.|.|.|.+.|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~----~----~~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV----D----DGNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc----c----CCEEEEeECCcccCEEEEEEEEec
Confidence            3567788899999999998 789999999999998876532 22111    1    347999999999999999999999


Q ss_pred             CCcee-EEEEE
Q psy9150          81 YNVDT-RTFKT   90 (97)
Q Consensus        81 ~g~~~-~~~~~   90 (97)
                      .|... ....|
T Consensus        74 ~G~~~s~~~~l   84 (86)
T cd05724          74 VGERESAAARL   84 (86)
T ss_pred             cCceeeeeEEE
Confidence            99764 34433

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.71  E-value=1.9e-15  Score=70.67  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             CeEEEEEEecccCCC--eeEEEeCCEEccccc---eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          13 HKIVFICMAKGKPRP--HITWFKDGVELYTHM---YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      +++.|.|.+.|.|.|  .+.|++++..+....   .....    .......+|.|..++..|.|.|+|.+.|..|...+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM----EVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE----EecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            357899999999987  579999998875432   11110    111124589999999999999999999999999998


Q ss_pred             EEEEEEE
Q psy9150          88 FKTDFSI   94 (97)
Q Consensus        88 ~~~~~~~   94 (97)
                      ..|.|..
T Consensus        77 ~~L~V~~   83 (85)
T cd05854          77 ATLVVRG   83 (85)
T ss_pred             EEEEEEC
Confidence            8887753

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.70  E-value=3.4e-16  Score=70.85  Aligned_cols=70  Identities=29%  Similarity=0.581  Sum_probs=54.8

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +.|.|.+.|.|.|.+.|++++..+.... ....       .....|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-eeEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            3689999999999999999887664321 1110       11347999999999999999999999999888777654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.70  E-value=1.4e-15  Score=70.95  Aligned_cols=81  Identities=19%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             CCeEEEEEEeccc--CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEE
Q psy9150          12 GHKIVFICMAKGK--PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK   89 (97)
Q Consensus        12 g~~~~l~c~~~~~--~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~   89 (97)
                      |+.+.|.|.+.+.  |.|.+.|.+++..+...................++|.|..++..|+|.|.|.+.|..|.......
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999998  88899999877654322111100001112234668999999999999999999999998888776


Q ss_pred             EEE
Q psy9150          90 TDF   92 (97)
Q Consensus        90 ~~~   92 (97)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.69  E-value=1.8e-15  Score=71.44  Aligned_cols=81  Identities=23%  Similarity=0.398  Sum_probs=56.8

Q ss_pred             CCeEEEEEEecccCCCeeEEEeC----CEEccccceeeEEEEEe----cCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKD----GVELYTHMYVNLHEWHY----GTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      |+.+.|.|.+.|.|.|.+.|+++    +..+.............    ........|.|..++.+|.|.|.|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    33332211111100000    00111357999999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888777665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.69  E-value=1.7e-15  Score=72.06  Aligned_cols=68  Identities=26%  Similarity=0.502  Sum_probs=52.3

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCcee
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~   85 (97)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..........       ....|.|..+. ..|.|.|.|.+.|..|...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-------~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-------IDGNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-------eCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            46899999999999999999999998886432211110       12467787764 6899999999999999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.68  E-value=4.3e-15  Score=70.42  Aligned_cols=83  Identities=29%  Similarity=0.537  Sum_probs=60.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+....    .......+|.|..++.+|.|.|.|.+.|..|
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            4567788999999999999986 5899997 56555432222211    1222356899999999999999999999865


Q ss_pred             c-eeEEEEEE
Q psy9150          83 V-DTRTFKTD   91 (97)
Q Consensus        83 ~-~~~~~~~~   91 (97)
                      . ....+.|.
T Consensus        82 ~~~~~sv~l~   91 (92)
T cd04977          82 TESEATVNLK   91 (92)
T ss_pred             CcceeEEEEE
Confidence            4 45555544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.68  E-value=1.6e-15  Score=69.33  Aligned_cols=72  Identities=31%  Similarity=0.502  Sum_probs=54.3

Q ss_pred             EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      +.|.|.+.| .|.|.+.|++++..+.........  ..........|.|..+..+|.|.|.|.+.|..|......
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNI--KIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceE--EEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            368899999 899999999999888654322210  011112246899999999999999999999999877655

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.68  E-value=2.6e-15  Score=70.91  Aligned_cols=81  Identities=22%  Similarity=0.328  Sum_probs=55.9

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCC----EEccccc--eeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDG----VELYTHM--YVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~----~~~~~~~--~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      |+.+.|.|.+.|.|.|.|.|++++    ..+....  ...........  ......|.|..++.+|.|.|.|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999853    2222111  11111000000  011347899999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888777665

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.67  E-value=2.1e-15  Score=68.84  Aligned_cols=69  Identities=29%  Similarity=0.519  Sum_probs=52.2

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce-eEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKTD   91 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~~~~~~~   91 (97)
                      +.|.|.+.|.|.|.+.|++++..+...  .+....    .    ...|.|..+...|.|.|.|.+.|..|.. .....|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----R----SGALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----C----CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            368999999999999999999877532  222211    1    2368999999999999999999999985 4444443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.67  E-value=1.1e-14  Score=67.91  Aligned_cols=82  Identities=28%  Similarity=0.525  Sum_probs=63.0

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+..........    .......|.|..+..+|.|.|.|.+.|..|....
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            456789999999999999999999999988775432222111    1112346889999999999999999999999888


Q ss_pred             EEEEEE
Q psy9150          87 TFKTDF   92 (97)
Q Consensus        87 ~~~~~~   92 (97)
                      .+.|.+
T Consensus        80 ~~~l~v   85 (85)
T cd05729          80 TYKVDV   85 (85)
T ss_pred             EEEEeC
Confidence            877653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.67  E-value=1.9e-15  Score=71.80  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=61.5

Q ss_pred             eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      ....+.+|+.+.|.|.+.+     .|.|.+.|++++..+...  ...+...       ....|.|..+..+|+|.|.|.+
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~   79 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVV   79 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEE
Confidence            3566779999999999988     688999999988654321  1111110       1347899999999999999999


Q ss_pred             EcCCCceeEEEEEEE
Q psy9150          78 DNMYNVDTRTFKTDF   92 (97)
Q Consensus        78 ~~~~g~~~~~~~~~~   92 (97)
                      .|..|.....+.|.|
T Consensus        80 ~N~~g~~~~~~~L~v   94 (94)
T cd05756          80 RNSTYCMKVSISLTV   94 (94)
T ss_pred             cCCCccEEEEEEEEC
Confidence            999998887776653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.67  E-value=1.2e-14  Score=69.19  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=56.8

Q ss_pred             ceeeEEEcC---CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEc
Q psy9150           4 HFDYEYVLG---HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g---~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~   79 (97)
                      +.++.+.+|   +.+.|.|.+.|.|.|.+.|+++|..+..........       ....|.|..+. ..|.|.|.|.+.|
T Consensus         8 P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-------~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           8 PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-------VAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-------ECCeEEEccCCccCcCEEEEEEEEc
Confidence            344555555   579999999999999999999998886432111110       02367777654 5899999999999


Q ss_pred             CCCceeE-EEEE
Q psy9150          80 MYNVDTR-TFKT   90 (97)
Q Consensus        80 ~~g~~~~-~~~~   90 (97)
                      ..|.... ...|
T Consensus        81 ~~G~~~s~~a~l   92 (94)
T cd05850          81 RCGTVVSREANL   92 (94)
T ss_pred             CcCcEEEEEEEE
Confidence            9998643 4433

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.66  E-value=2.2e-15  Score=69.06  Aligned_cols=74  Identities=27%  Similarity=0.468  Sum_probs=57.0

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      +.|.|.+.|.|.|.+.|++++..+..........  ..   ....|.|..+...|.|.|.|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~--~~---~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL--IA---NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE--eC---CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3688999999999999999998876433222211  01   12469999999999999999999999998888877654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.66  E-value=1e-15  Score=70.88  Aligned_cols=77  Identities=29%  Similarity=0.378  Sum_probs=55.0

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCE---Ecc-ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGV---ELY-THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+. ........ ..   ......|.|..+..+|.|.|.|.+.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGN-VV---VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCC-EE---EccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            6789999999999999999999632   111 00000000 00   0013479999999999999999999999999888


Q ss_pred             EEEEE
Q psy9150          88 FKTDF   92 (97)
Q Consensus        88 ~~~~~   92 (97)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            87653

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.65  E-value=1.6e-14  Score=68.82  Aligned_cols=82  Identities=30%  Similarity=0.454  Sum_probs=58.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccC-----CCCCCEEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA-----TQMDAGIYECYAD   78 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~c~~~   78 (97)
                      +.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+..........  ..    ..++.+..+     ...|.|.|.|.+.
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~--~~----~~~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ--LP----NGSLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE--cc----CCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence            456778899999999999999999999999998876433211100  01    123344333     6789999999999


Q ss_pred             cC-CCce-eEEEEEE
Q psy9150          79 NM-YNVD-TRTFKTD   91 (97)
Q Consensus        79 ~~-~g~~-~~~~~~~   91 (97)
                      |. .|.. +..+.|.
T Consensus        80 N~~~G~~~s~~~~l~   94 (95)
T cd05722          80 NDSLGSIVSRTARLT   94 (95)
T ss_pred             CCccCcEEEeeeEEe
Confidence            99 8886 4455443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.65  E-value=5.7e-15  Score=68.35  Aligned_cols=71  Identities=23%  Similarity=0.367  Sum_probs=55.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+.++.+..|+.+.|.|.+.|.|.| .+.|+++|..+....  .         ...+.|.+..+  .|.|.|.|.+.|..
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~--~---------~~~s~L~i~~~--~d~g~Y~C~A~N~~   70 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP--A---------PSPSVLNVPGL--NETSKFSCEAHNAK   70 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC--C---------CCCCEEEEccc--cCCeEEEEEEEecc
Confidence            4567889999999999999999999 799999998875411  0         01246777766  46799999999999


Q ss_pred             CceeE
Q psy9150          82 NVDTR   86 (97)
Q Consensus        82 g~~~~   86 (97)
                      |....
T Consensus        71 G~~~s   75 (81)
T cd05749          71 GVTTS   75 (81)
T ss_pred             CcEEe
Confidence            97643

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.64  E-value=6.4e-14  Score=65.35  Aligned_cols=80  Identities=20%  Similarity=0.364  Sum_probs=55.5

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC--ceeEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN--VDTRTFK   89 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g--~~~~~~~   89 (97)
                      |+.+.|.|.+.+.|.+.+.|+++++........ ............++|.|..++.+|+|.|.|.+.|..+  .....+.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            678999999999999999999876543211110 0011112233467899999999999999999998876  3455555


Q ss_pred             EEE
Q psy9150          90 TDF   92 (97)
Q Consensus        90 ~~~   92 (97)
                      |.|
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            544

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.64  E-value=1.2e-14  Score=69.01  Aligned_cols=65  Identities=23%  Similarity=0.430  Sum_probs=50.9

Q ss_pred             CeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCceeE
Q psy9150          13 HKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ..+.|.|.+.|.|.|.+.|++++..+... .+....         ...|.|..+. ..|.|.|.|.+.|..|....
T Consensus        20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~---------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV---------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE---------CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            47999999999999999999999887532 222111         3468888774 68999999999999998643

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.63  E-value=2.2e-14  Score=67.08  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             eEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          14 KIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        14 ~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      .+.|.|.+.|.|.|  .+.|++++..+............ ........|.|..++..|.|.|.|.+.|..|.......|.
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRV-GGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEE-ecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            57899999999887  56899999887543210000000 0011245799999999999999999999999988887776


Q ss_pred             EE
Q psy9150          92 FS   93 (97)
Q Consensus        92 ~~   93 (97)
                      |.
T Consensus        81 V~   82 (85)
T cd04970          81 VR   82 (85)
T ss_pred             EE
Confidence            64

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.61  E-value=6.3e-14  Score=66.03  Aligned_cols=82  Identities=18%  Similarity=0.269  Sum_probs=59.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ++..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.....  .+..   ..    ...|.|..+..+|.|.|.|.+.+.
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~---~~----~~~L~I~~~~~~D~G~Y~C~a~~~   73 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLL---VT----EDGLLIRSVSPADAGVYTCQSVEH   73 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEE---Ec----CCCEEEccCCHHHCEEEEEEEecC
Confidence            456778899999999999977 8889999999876654321  1111   01    235889999999999999999876


Q ss_pred             CC-ceeEEEEEEE
Q psy9150          81 YN-VDTRTFKTDF   92 (97)
Q Consensus        81 ~g-~~~~~~~~~~   92 (97)
                      .+ .....+.|.|
T Consensus        74 ~~~~~~~~~~l~V   86 (89)
T cd04979          74 GFKQTLATYSLNV   86 (89)
T ss_pred             ccceeEeEEEEEE
Confidence            54 3455555554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.61  E-value=2.7e-14  Score=66.53  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=58.0

Q ss_pred             eEEEEEEecc--cCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          14 KIVFICMAKG--KPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        14 ~~~l~c~~~~--~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      .+.|.|.+.+  .+.+.+.|+++|+.+.... .....  ........+.|.|.+++..|.|.|+|.+.|..+.......|
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~--~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFE--RVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEE--EeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence            5789999966  5578899999999986321 11111  10111123479999999999999999999999999888877


Q ss_pred             EEEE
Q psy9150          91 DFSI   94 (97)
Q Consensus        91 ~~~~   94 (97)
                      .|..
T Consensus        80 ~V~~   83 (85)
T cd05853          80 IVRG   83 (85)
T ss_pred             EEec
Confidence            7754

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.60  E-value=3.1e-14  Score=66.53  Aligned_cols=77  Identities=27%  Similarity=0.409  Sum_probs=60.3

Q ss_pred             CceeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ++..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....  .         .....|.|..++.+|.|.|.|.+.|..
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~---------~~~~~L~I~~v~~~DsG~Y~C~a~n~~   75 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--M---------DFNGILTIRNVQLSDAGTYVCTGSNML   75 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--c---------ccCCEEEECCCCHHHCEEEEEEEeccC
Confidence            456778899999999999864 6888999999876543211  0         013479999999999999999999999


Q ss_pred             CceeEEEEE
Q psy9150          82 NVDTRTFKT   90 (97)
Q Consensus        82 g~~~~~~~~   90 (97)
                      |.......|
T Consensus        76 g~~~~~~~l   84 (85)
T cd05754          76 DTDEATATL   84 (85)
T ss_pred             CeEeEEEEE
Confidence            988776544

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.59  E-value=1.2e-14  Score=66.79  Aligned_cols=67  Identities=27%  Similarity=0.476  Sum_probs=47.4

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC----CCCCEEEEEEEEcCCCceeE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT----QMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +.|.|.+.|.|.|.+.|++++..+...........  .   ....|.|..+.    .+|.|.|.|.+.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~---~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--P---DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--C---CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            36889999999999999999988754321111110  0   13466777664    36799999999999998643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.59  E-value=6.7e-14  Score=66.20  Aligned_cols=68  Identities=25%  Similarity=0.491  Sum_probs=50.7

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCceeE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +..+.|.|.+.|.|.|.+.|++++..+..........       ....|.|..+. ..|.|.|+|.+.|..|....
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            4579999999999999999999998874322111110       12367787766 48999999999999997643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.58  E-value=6.2e-14  Score=64.39  Aligned_cols=65  Identities=26%  Similarity=0.484  Sum_probs=46.3

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCC----CCCCEEEEEEEEcCCCceeE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPAT----QMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +.|.|.+.|.|.|.+.|++++..+...  .+..+.    .   ...+|.|..+.    ..|.|.|.|.+.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~----~---~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR----R---RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe----C---CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            368999999999999999999876422  222211    0   13467776653    24689999999999998654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.58  E-value=1.6e-14  Score=66.68  Aligned_cols=69  Identities=22%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce-e
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-T   85 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~   85 (97)
                      +.|.|.+.|.|.|.+.|++++.....        ..+...        ....+|.|..+..+|.|.|.|.+.|..|.. .
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--------ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            36899999999999999986432111        111111        013579999999999999999999999986 4


Q ss_pred             EEEEEE
Q psy9150          86 RTFKTD   91 (97)
Q Consensus        86 ~~~~~~   91 (97)
                      +...|.
T Consensus        73 ~~~~l~   78 (79)
T cd05734          73 KSMVLT   78 (79)
T ss_pred             eEEEEe
Confidence            555443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.57  E-value=1.6e-13  Score=64.95  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ....+..|....|.|...+     .|.|.+.|++++.++........         ....|.|..+..+|+|.|+|.+.|
T Consensus         3 ~~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           3 YKQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             ceEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEe
Confidence            3456778999999998743     25789999999998865432211         145799999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy9150          80 MYNVDTRTFKTDF   92 (97)
Q Consensus        80 ~~g~~~~~~~~~~   92 (97)
                      ..+.....++..+
T Consensus        74 ~~~~~~~~~t~t~   86 (92)
T cd05757          74 THNGKQYNVTRTI   86 (92)
T ss_pred             cCCCEEEEEEEEE
Confidence            9887665544443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.57  E-value=6.4e-14  Score=64.34  Aligned_cols=67  Identities=25%  Similarity=0.462  Sum_probs=46.0

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCC----CCCEEEEEEEEcCCCceeE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ----MDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~c~~~~~~g~~~~   86 (97)
                      +.|.|.+.|.|.|.+.|++++..+..........   ..  ...+|.|..+..    .|.|.|.|.+.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~---~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM---KP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE---eC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            3689999999999999999998774322111110   00  123566665553    3689999999999998654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.57  E-value=2.9e-13  Score=63.29  Aligned_cols=68  Identities=24%  Similarity=0.338  Sum_probs=54.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.+..+..|+.+.|.|.+.+ +.+.+.|+++|..+.... +..+.         ...|.|.+++..|.|.|+|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~---------~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY---------RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE---------CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            45778899999999999854 678899999999987542 22211         3368999999999999999988754

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.56  E-value=1e-12  Score=62.73  Aligned_cols=86  Identities=19%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCC-CEEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~   79 (97)
                      +....+.+|+.+.|.|.+.+.|.|. +.|..++..+...  .++.+... .......+.|.|..+...| .|.|.|.+.|
T Consensus         8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N   86 (98)
T cd05898           8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTHYNCTAWN   86 (98)
T ss_pred             CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence            4567788999999999998778764 7898877665432  33333221 1233456789999998777 6899999999


Q ss_pred             CCCceeEEEEE
Q psy9150          80 MYNVDTRTFKT   90 (97)
Q Consensus        80 ~~g~~~~~~~~   90 (97)
                      ..|.+...+.|
T Consensus        87 ~~G~d~~~i~L   97 (98)
T cd05898          87 SFGSGTAIIQL   97 (98)
T ss_pred             CCccceEEEEe
Confidence            99999887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.56  E-value=4.1e-13  Score=63.92  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=53.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      .++.+..|+.+.|.|.+.+.|.|.+.|++++..+..        ..++...    ........|.|.++..+|.|.|.|.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV----KSTPTELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE----eCCCceEEEEECCCCcccCEEEEEE
Confidence            578899999999999999999999999997753311        1111110    1111246899999999999999999


Q ss_pred             EEc
Q psy9150          77 ADN   79 (97)
Q Consensus        77 ~~~   79 (97)
                      +..
T Consensus        81 ~~t   83 (95)
T cd05882          81 IFT   83 (95)
T ss_pred             EEe
Confidence            876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.55  E-value=2.3e-13  Score=62.33  Aligned_cols=71  Identities=24%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             EEEEEEec-ccCCCeeEEEeCCEEccccce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          15 IVFICMAK-GKPRPHITWFKDGVELYTHMY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        15 ~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      +.|.|.+. +.|.+.+.|++++..+.....  .....   ........|.|..+...|+|.|.|.+.|..|......
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI---RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE---EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            36889986 467789999999988753211  11110   1111245799999999999999999999999877655

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.55  E-value=1.7e-12  Score=61.91  Aligned_cols=89  Identities=15%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+.+|+.+.|.|.+.++|.|. +.|.+++..+................++.+.|.+.+++.++.|.|+|.+.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            356788999999999999999998 9999987765433221111111133457889999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....|.|.+.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9999988764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.52  E-value=1.2e-12  Score=62.39  Aligned_cols=74  Identities=16%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEc--------cccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL--------YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ...++.+.+|+.+.|.|.+.+.|.+.+.|++.++..        ....++...    .......+|.|..++.+|.|.|.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~   78 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYT   78 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEE
Confidence            456889999999999999999999999998643211        111222211    11112457999999999999999


Q ss_pred             EEEEcC
Q psy9150          75 CYADNM   80 (97)
Q Consensus        75 c~~~~~   80 (97)
                      |.+.+.
T Consensus        79 C~~~t~   84 (95)
T cd07701          79 CSLFTM   84 (95)
T ss_pred             EEeEee
Confidence            998874

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.50  E-value=6.7e-13  Score=61.05  Aligned_cols=62  Identities=23%  Similarity=0.409  Sum_probs=49.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      .+....+.+|+.+.|.|.+.+.|. +.+.|++++..+...               ...|.|..+ .+|+|.|.|.+.+.
T Consensus         6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------------CCeEEEeec-ccCCEEeEEECCCC
Confidence            345567889999999999988775 469999999876321               236788888 89999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG3513|consensus

Probab=99.49  E-value=7.6e-13  Score=82.92  Aligned_cols=84  Identities=25%  Similarity=0.477  Sum_probs=71.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce---eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY---VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ...+..+..|+++.+.|.+.|.|.|.+.|+++|.++....+   ..+.         ..+|.|..+...|+|.|+|.+.|
T Consensus       337 ~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~---------~g~L~is~v~~~dsg~YQC~A~N  407 (1051)
T KOG3513|consen  337 KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID---------DGTLIISNVQESDSGVYQCIAEN  407 (1051)
T ss_pred             ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe---------CCEEEEEecccccCeEEEeeeec
Confidence            34677888999999999999999999999999999875443   2222         45899999999999999999999


Q ss_pred             CCCceeEEEEEEEEEe
Q psy9150          80 MYNVDTRTFKTDFSIT   95 (97)
Q Consensus        80 ~~g~~~~~~~~~~~~~   95 (97)
                      ..|.......|.|...
T Consensus       408 k~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  408 KYGTIYANAELKVLAS  423 (1051)
T ss_pred             ccceEeeeeEEEEEcc
Confidence            9999988888887653

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.46  E-value=2.2e-12  Score=56.45  Aligned_cols=63  Identities=35%  Similarity=0.631  Sum_probs=48.8

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +|+.+.|.|.+.+.+.+.+.|++++..+....  ...       .....|.|..+...|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESN--RLS-------ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCC--EEe-------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47889999998888899999999888776211  111       1134799999999999999999988754

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.45  E-value=7.7e-13  Score=62.81  Aligned_cols=75  Identities=13%  Similarity=0.258  Sum_probs=55.8

Q ss_pred             CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccc--cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +...+.+.+|..+.|.|.. .|.|.+.+.|++++..+..  ..+..+.    .   ....|.+..+...|.|.|.|.+.|
T Consensus         9 ~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~----~---~~G~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727           9 ERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS----Q---TNGNLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             CcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe----C---CCCcEEEeecCHhhCceeEEEEEe
Confidence            4456778899999999976 7889999999998765321  1111111    1   135799999999999999999999


Q ss_pred             CCCce
Q psy9150          80 MYNVD   84 (97)
Q Consensus        80 ~~g~~   84 (97)
                      .....
T Consensus        82 ~~~~~   86 (96)
T cd05727          82 PSSTK   86 (96)
T ss_pred             cccCC
Confidence            86544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.44  E-value=1.5e-11  Score=58.11  Aligned_cols=78  Identities=15%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc----ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY----THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ..+...+|+.+.|.|.. +.|.|.+.|++.  +....    ...+...         ....|.|..+..+|+|.|+|.+.
T Consensus         4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~   73 (91)
T cd05871           4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAV   73 (91)
T ss_pred             eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEE
Confidence            45668899999999996 578899999983  22211    1111111         13469999999999999999998


Q ss_pred             c-CCCceeEEEEEEE
Q psy9150          79 N-MYNVDTRTFKTDF   92 (97)
Q Consensus        79 ~-~~g~~~~~~~~~~   92 (97)
                      + ..+.......|.|
T Consensus        74 ~~~~~~~~~~~~l~v   88 (91)
T cd05871          74 EHSFSQTLAKYTLHV   88 (91)
T ss_pred             ccCCeEEEEEEEEEE
Confidence            4 5554555444443

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00409 IG Immunoglobulin

Probab=99.43  E-value=5.7e-11  Score=54.79  Aligned_cols=83  Identities=24%  Similarity=0.413  Sum_probs=61.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+..........   ...  ...|.+..++..|.|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~---~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR---SGS--NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE---cCC--eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            356778999999999998888889999997 77665333332221   111  457999999999999999999988887


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00409       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            666655543

>smart00410 IG_like Immunoglobulin like

Probab=99.43  E-value=5.7e-11  Score=54.79  Aligned_cols=83  Identities=24%  Similarity=0.413  Sum_probs=61.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+..........   ...  ...|.+..++..|.|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~---~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR---SGS--NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE---cCC--eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            356778999999999998888889999997 77665333332221   111  457999999999999999999988887


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00410       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            666655543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>KOG4194|consensus

Probab=99.43  E-value=7e-13  Score=79.47  Aligned_cols=86  Identities=26%  Similarity=0.343  Sum_probs=68.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEE-cccc--ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVE-LYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .+.+++...|+.+.+.|.+.|.|.|.|.|.++|.. ++..  .+..+...       ...+.|.+++.+|.|.|+|.+.|
T Consensus       618 tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe-------dd~f~Itnvk~eD~GiYtC~A~n  690 (873)
T KOG4194|consen  618 TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE-------DDVFFITNVKIEDQGIYTCTAQN  690 (873)
T ss_pred             CcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC-------CCEEEEecccccccceeEEeeec
Confidence            35688899999999999999999999999998765 4433  23332211       34789999999999999999999


Q ss_pred             CCCceeEEEEEEEEEe
Q psy9150          80 MYNVDTRTFKTDFSIT   95 (97)
Q Consensus        80 ~~g~~~~~~~~~~~~~   95 (97)
                      ..|..+...++.|...
T Consensus       691 ~AG~isanAtL~V~e~  706 (873)
T KOG4194|consen  691 VAGQISANATLTVLET  706 (873)
T ss_pred             cccceeeceEEEEecC
Confidence            9999888887777554

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.42  E-value=9.5e-12  Score=67.62  Aligned_cols=69  Identities=25%  Similarity=0.436  Sum_probs=53.2

Q ss_pred             eeEEEcCCeEEEEEEec-----ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           6 DYEYVLGHKIVFICMAK-----GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~-----~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +..+..|+.+.|.|.+.     +.|.|.+.|++++..+....+.....       ....|.|.+++.+|+|.|.|.+...
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~-------~~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN-------NNSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC-------CCCEEEECcCCHHhCEEEEEEEEEe
Confidence            45667899999999985     34578999999999987544333211       1347999999999999999999876


Q ss_pred             C
Q psy9150          81 Y   81 (97)
Q Consensus        81 ~   81 (97)
                      .
T Consensus       211 ~  211 (227)
T PHA02826        211 K  211 (227)
T ss_pred             E
Confidence            4

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.42  E-value=3.4e-12  Score=59.39  Aligned_cols=71  Identities=23%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             eEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce-
Q psy9150           7 YEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~-   84 (97)
                      ..+.+|+.+.|.|.+. +.+.+.+.|++++..+....             ....|.|..++.+|+|.|.|.+.+..+.. 
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            3678999999999985 45667799999987654211             13478999999999999999999988754 


Q ss_pred             eEEEEE
Q psy9150          85 TRTFKT   90 (97)
Q Consensus        85 ~~~~~~   90 (97)
                      +..+.|
T Consensus        76 s~~~~i   81 (83)
T cd05753          76 SEPVSI   81 (83)
T ss_pred             CCCEEE
Confidence            334433

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG3513|consensus

Probab=99.41  E-value=3.8e-12  Score=79.93  Aligned_cols=79  Identities=24%  Similarity=0.338  Sum_probs=63.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCE-EccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGV-ELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.....|+.+.|.|.+.|.|.|.+.|.|.+. ++......         ..+..+|.|.+++.+|.|.|.|.+.|..|..
T Consensus       250 ~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~---------~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~  320 (1051)
T KOG3513|consen  250 TETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATY---------SNYGKVLKIPNVQYEDAGEYECIAENSRGSA  320 (1051)
T ss_pred             cccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceee---------eccccEEEecccCcCCCeEEEEEEecccccc
Confidence            5677889999999999999999999999665 44322211         1125689999999999999999999999988


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      .+...+.+.
T Consensus       321 ~~~~~v~v~  329 (1051)
T KOG3513|consen  321 THSGHVTVY  329 (1051)
T ss_pred             eeeEEEEEe
Confidence            877776654

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.39  E-value=8.6e-12  Score=59.19  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=52.8

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEc-cc-c------------ceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-YT-H------------MYVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~-~~-~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      +.+..|+++.|.|...+.+.+.+.|+++++.. .. .            .++....  .........|.|.+++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEE
Confidence            45778999999999998899999999765322 11 0            1111110  0111224579999999999999


Q ss_pred             EEEEEEcCCCce
Q psy9150          73 YECYADNMYNVD   84 (97)
Q Consensus        73 y~c~~~~~~g~~   84 (97)
                      |.|.+.|..+..
T Consensus        80 Y~C~v~~~~~~~   91 (94)
T cd07690          80 YICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCccceE
Confidence            999998876653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.39  E-value=2.5e-11  Score=56.32  Aligned_cols=72  Identities=25%  Similarity=0.390  Sum_probs=47.4

Q ss_pred             EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +.|.|.+.| .|.+.+.|++++..+...................+.|.+......+.+.|.|.+.|.......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~   74 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK   74 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence            578999976 688899999999887643211111000001122456778777777889999999988755433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.39  E-value=2.2e-11  Score=57.03  Aligned_cols=81  Identities=20%  Similarity=0.239  Sum_probs=54.4

Q ss_pred             CCeEEEEEEecccC--CCeeEEEeCCEEccccceeeE-EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          12 GHKIVFICMAKGKP--RPHITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        12 g~~~~l~c~~~~~~--~p~i~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      |+.+.|.|.+.+.+  ...+.|..++........... ...........++|.|..+...|.|.|.|.+.|..|......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            67899999997755  446799887654321100000 000001122367899999999999999999999988887777


Q ss_pred             EEEE
Q psy9150          89 KTDF   92 (97)
Q Consensus        89 ~~~~   92 (97)
                      .|.|
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            6665

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.37  E-value=4.1e-11  Score=55.81  Aligned_cols=82  Identities=13%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .....+..|+.+.|.|...+. .+.+.|+.++..+....+....         ...+.|..++.+|+|.|.|.+. +.|.
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~-E~gf   71 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE-EEGF   71 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe-cCCC
Confidence            457789999999999999764 6689999999987654333221         2347789999999999999876 4455


Q ss_pred             eeEEEEEEEEEee
Q psy9150          84 DTRTFKTDFSITF   96 (97)
Q Consensus        84 ~~~~~~~~~~~~~   96 (97)
                      ...-....+.++.
T Consensus        72 ~~~~~~y~l~v~~   84 (85)
T cd05872          72 QQLVASYSLNVVE   84 (85)
T ss_pred             eEEEEEEEEEEeC
Confidence            5544445555543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.36  E-value=1.1e-10  Score=55.59  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEc-c-------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-Y-------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC   75 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c   75 (97)
                      ..++.+.+|+.+.|.|.+.+.+.+.+.|++.+..+ .       ...++...    ........|.|..++.+|.|.|.|
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C   79 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTC   79 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEE
Confidence            46788999999999999988888999998633211 1       01121111    111124579999999999999999


Q ss_pred             EEEcCC
Q psy9150          76 YADNMY   81 (97)
Q Consensus        76 ~~~~~~   81 (97)
                      .+....
T Consensus        80 ~~~~~~   85 (95)
T cd05717          80 SLYTMP   85 (95)
T ss_pred             EEecCC
Confidence            988654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.34  E-value=1.3e-11  Score=58.50  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=55.7

Q ss_pred             CceeeEEEcCCeEEEEEE-ecccCCCeeEEEeCCEEcc-ccceeeEEEEEecCceEEEEEEEccCCCCCCE-EEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICM-AKGKPRPHITWFKDGVELY-THMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~-~~~~~~p~i~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~c~~~~   79 (97)
                      ....+.+.+|+.+.|.|. ..|.|.|.+.|+.++.... ...+..+.        ....|.|.++...|.| .|.|.+.|
T Consensus         9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845           9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEc
Confidence            346788999999999997 5999999999998654422 22222111        1358999999999999 79999998


Q ss_pred             CCCce
Q psy9150          80 MYNVD   84 (97)
Q Consensus        80 ~~g~~   84 (97)
                      .....
T Consensus        81 ~~~~~   85 (95)
T cd05845          81 PGLRT   85 (95)
T ss_pred             ccccc
Confidence            86543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.33  E-value=6e-11  Score=54.60  Aligned_cols=67  Identities=21%  Similarity=0.377  Sum_probs=49.3

Q ss_pred             EEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          15 IVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        15 ~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.|.|.. .+.|++.+.||+++..+.......   .........++|.+.....+|.+.|.|.+.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~---~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ---ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccc---cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            6789998 568999999999999986432110   000111235579999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.32  E-value=5.4e-11  Score=52.60  Aligned_cols=63  Identities=27%  Similarity=0.508  Sum_probs=45.3

Q ss_pred             CCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150          12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus        12 g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      |+.+.|.|.+ .+.+.+.+.|++++............   .........|.|.++..+|.|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS---TNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE---ETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee---cccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6789999999 77788899999988766543322211   111212224999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.31  E-value=6.9e-11  Score=54.26  Aligned_cols=70  Identities=21%  Similarity=0.490  Sum_probs=53.4

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC-cee
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN-VDT   85 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g-~~~   85 (97)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+....               ..+.+..+...+.|.|.|.+.+..+ ...
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---------------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s   73 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ---------------NGLFIPNVSPEDSGNYTCRASNGSGSNTS   73 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES---------------SEEEESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee---------------eeeeeeeeccccCEEEEEEEEeCCCCeEe
Confidence            567899999999999998889999999887665211               1255677888999999999998665 344


Q ss_pred             EEEEEE
Q psy9150          86 RTFKTD   91 (97)
Q Consensus        86 ~~~~~~   91 (97)
                      ..+.|+
T Consensus        74 ~~~~v~   79 (80)
T PF13895_consen   74 TSVNVT   79 (80)
T ss_dssp             EEEEEE
T ss_pred             eeEEee
Confidence            555544

...

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.29  E-value=1.6e-10  Score=55.39  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=54.4

Q ss_pred             eeeEEEcCCeEEEEEEec-----------ccCCCeeEEEeCCEEccccce-----eeEEEEEecCceEEEEEEEccCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAK-----------GKPRPHITWFKDGVELYTHMY-----VNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~-----------~~~~p~i~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ..+.+.+|+.+.+.|...           ......+.|++++..+.....     .++.       .....|.|.++..+
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~-------~~~~~Lwf~Pa~~e   80 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMS-------KEEDSIWFRPAELQ   80 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEE-------EeCCEEEEEeCChh
Confidence            456788999999999961           112347999998754443221     1111       11457999999999


Q ss_pred             CCEEEEEEEEcCCCceeEEEEEE
Q psy9150          69 DAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        69 ~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      |+|.|.|.+.|...-....+.|.
T Consensus        81 DSG~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          81 DSGLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             hCeEEEEEECCCCcceEEEEEEE
Confidence            99999999998775545454443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>KOG4221|consensus

Probab=99.29  E-value=5.4e-11  Score=75.62  Aligned_cols=82  Identities=23%  Similarity=0.410  Sum_probs=61.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +....+..|+.+.|.|.+.+.|.|.+.|.+++..+.-.. .++..      .....|.|..++..|+|.|+|.+.|....
T Consensus       244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl------~g~~slliS~a~~~dSg~YtC~Atn~~D~  316 (1381)
T KOG4221|consen  244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVL------VGGSSLLISNATDDDSGKYTCRATNTNDS  316 (1381)
T ss_pred             CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEE------ecccceEEeccccccCceEEEEecCCCcc
Confidence            356678899999999999999999999999999887554 22211      01347999999999999999999995444


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.|
T Consensus       317 idasaev~V  325 (1381)
T KOG4221|consen  317 IDASAEVTV  325 (1381)
T ss_pred             cccceEEEE
Confidence            444443343

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.28  E-value=3.1e-10  Score=64.83  Aligned_cols=81  Identities=17%  Similarity=0.373  Sum_probs=56.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccc-----eeeEEEEEec---CceEEEEEEEccCCCCCCEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHM-----YVNLHEWHYG---TDRIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y   73 (97)
                      ..+.+..|+.+.|.|.+.|.|.+   .+.|+++|..+....     +.........   .......|.|.+++.+|.|.|
T Consensus       228 ~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y  307 (326)
T PHA02785        228 EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF  307 (326)
T ss_pred             CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee
Confidence            34566779999999999988864   799999998875421     1111110000   111245799999999999999


Q ss_pred             EEEEEcCCCcee
Q psy9150          74 ECYADNMYNVDT   85 (97)
Q Consensus        74 ~c~~~~~~g~~~   85 (97)
                      .|.+.|..+...
T Consensus       308 ~C~A~n~~~~~~  319 (326)
T PHA02785        308 TCMAFTIPSISK  319 (326)
T ss_pred             EEEEEeccCceE
Confidence            999999886543

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.21  E-value=1.7e-09  Score=53.26  Aligned_cols=86  Identities=15%  Similarity=0.252  Sum_probs=54.3

Q ss_pred             ceeeEEEcCCeEEEEEEeccc----CCCeeEEEe---------------CCEEcccc-cee--eEEEEEecCceEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK----PRPHITWFK---------------DGVELYTH-MYV--NLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~----~~p~i~w~~---------------~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~   61 (97)
                      ...+.+..|+.+.|.|.....    ....+.|..               +|...... ..+  +.. +.........++.
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~-f~g~~~~~daSI~   83 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIE-WVGNPSRKDGSIV   83 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceE-EeCCCCcCeeEEE
Confidence            456788999999999999553    235799932               22222100 100  111 1111223466899


Q ss_pred             EccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          62 IDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      |.+++.+|.|.|.|.+.|+.+.......+
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~  112 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQV  112 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCcCCceeEE
Confidence            99999999999999999987755443433

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.20  E-value=6.5e-10  Score=52.84  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             eeEEEcCCeEEEEEEe-c----ccCCCeeEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICMA-K----GKPRPHITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~-~----~~~~p~i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ...+..|....+.|+- .    ..+.|.+.||+++.++..... ....    .   ....|.|..+..+|.|.|+|.+.+
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~----~---~~~~L~I~~v~~~D~G~YtC~~~~   76 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL----K---GSTYLHIIDVSLNDSGYYTCKLQF   76 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec----C---CCCEEEEEEcChhhCEEEEEEEEE
Confidence            3456678889999984 2    336678999999988764321 1110    0   023699999999999999999999


Q ss_pred             CCCce
Q psy9150          80 MYNVD   84 (97)
Q Consensus        80 ~~g~~   84 (97)
                      ..+..
T Consensus        77 ~~~g~   81 (95)
T cd05897          77 THEGK   81 (95)
T ss_pred             eeCCE
Confidence            87654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.15  E-value=4.3e-10  Score=64.26  Aligned_cols=76  Identities=22%  Similarity=0.329  Sum_probs=55.1

Q ss_pred             EEEcCCeEEEEEEe-----cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           8 EYVLGHKIVFICMA-----KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         8 ~~~~g~~~~l~c~~-----~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+|+.+.+.|.+     .|.|.+.+.|++++.....  ....     ..   ...|.+..+..+|+|.|+|.+.|..|
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--~~~~-----~~---g~~l~i~~~~~~DsG~Y~C~a~N~~g  106 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--IIPI-----DN---GSNMLILNPTQSDSGIYICITKNETY  106 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--EEEc-----cC---CceEEEcccCcccCeEEEEEEECCCc
Confidence            45678999999997     6888899999998743211  0000     01   22477888999999999999999988


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.|.
T Consensus       107 ~~~~s~~L~V~  117 (326)
T PHA02785        107 CDMMSLNLTIV  117 (326)
T ss_pred             ceEEEEEEEEE
Confidence            76666665553

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.15  E-value=4.5e-09  Score=50.98  Aligned_cols=84  Identities=19%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             cCCeEEEEEEecccC------CCeeEEEeCC-----E-Ecc--ccceeeE---EEEEe---cCceEEEEEEEccCCCCCC
Q psy9150          11 LGHKIVFICMAKGKP------RPHITWFKDG-----V-ELY--THMYVNL---HEWHY---GTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~------~p~i~w~~~~-----~-~~~--~~~~~~~---~~~~~---~~~~~~~~l~i~~~~~~~~   70 (97)
                      .|+.+.|.|.....+      .+.+.|++..     . .+.  .......   ...+.   .......+|.|.+++.+|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            478899999986543      5679999852     1 111  1111000   00000   1122356899999999999


Q ss_pred             EEEEEEEEcCCCceeEEEEEEEEE
Q psy9150          71 GIYECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        71 g~y~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998777777777777654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.11  E-value=6.4e-09  Score=49.49  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=52.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcc--------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY--------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ...++.+.+|+.+.|.|.+.+.....+.|++.+..+.        ...++...    .......+|.|..++.+|.|.|.
T Consensus         3 ~~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~----~~~~~~~tL~I~~vq~~D~G~Y~   78 (95)
T cd05881           3 VTEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV----NFSSNELRVSLSNVSLSDEGRYF   78 (95)
T ss_pred             ccCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE----eCCCCEEEEEECcCCcccCEEEE
Confidence            3467889999999999999887777788987654321        12233222    11122457999999999999999


Q ss_pred             EEEEc
Q psy9150          75 CYADN   79 (97)
Q Consensus        75 c~~~~   79 (97)
                      |.+..
T Consensus        79 Cqv~t   83 (95)
T cd05881          79 CQLYT   83 (95)
T ss_pred             EEEEc
Confidence            98864

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.10  E-value=1.7e-09  Score=58.98  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             eeeEEEcCCeEEEEEEecccC-----------CCeeEEEeCCEEccc---cceeeEEEEEecC-ceEEEEEEEccCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP-----------RPHITWFKDGVELYT---HMYVNLHEWHYGT-DRIKSKIEIDPATQMD   69 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~-----------~p~i~w~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~   69 (97)
                      ..+.+.+|+.+.|.|.+.+.+           .+.+.|++++....-   ..+.......... ......|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            467889999999999986644           447999998654210   0000000000000 0113479999999999


Q ss_pred             CEEEEEEEEcCCCceeEEEEEEE
Q psy9150          70 AGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        70 ~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +|.|.|.+.|..+.....+.|.+
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V  132 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTF  132 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEE
Confidence            99999999998877666665554

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.09  E-value=5.1e-09  Score=50.93  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCCE---Ec---c--------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGV---EL---Y--------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~---~~---~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +++..+.+..|+.+.|.|.+.+.+.+.+.|++...   +.   .        ...++.+.   .........|.|.+++.
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~   79 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQL   79 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCH
Confidence            35667889999999999999877788899998321   10   0        01111111   01112356899999999


Q ss_pred             CCCEEEEEEEEcCC
Q psy9150          68 MDAGIYECYADNMY   81 (97)
Q Consensus        68 ~~~g~y~c~~~~~~   81 (97)
                      +|+|.|.|.+.+..
T Consensus        80 ~DsG~Y~C~~~~~~   93 (109)
T cd04983          80 SDSAVYFCALSESG   93 (109)
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999988654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.06  E-value=2.9e-08  Score=45.95  Aligned_cols=67  Identities=25%  Similarity=0.304  Sum_probs=47.5

Q ss_pred             EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.|.|.+.| .|.+.|.|++++..+......  ...........++|.+..-..+|...|.|.+.|+.-.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~   69 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK   69 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccC
Confidence            578999854 688889999999888653211  1111122344678888888888889999999997654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.05  E-value=2e-08  Score=48.68  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             cCCeEEEEEEecccC------CCeeEEEeCCE----E---c-cccce------eeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150          11 LGHKIVFICMAKGKP------RPHITWFKDGV----E---L-YTHMY------VNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~------~p~i~w~~~~~----~---~-~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      .|+.+.|.|.....|      ...+.|++...    .   + .....      +..............+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            378899999986542      35699998431    0   0 00000      000000000111245799999999999


Q ss_pred             EEEEEEEEcCCCceeEEEEEEEEE
Q psy9150          71 GIYECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        71 g~y~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888888888777654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=99.02  E-value=1.7e-08  Score=46.79  Aligned_cols=69  Identities=22%  Similarity=0.317  Sum_probs=44.6

Q ss_pred             EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.|.|.+.+ .|.+.+.|++++..+.... ..............+.+.+......+.+.|.|.+.+.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            578999966 4888999999998876332 11111000111224456666666666789999999887654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.01  E-value=3e-08  Score=48.61  Aligned_cols=83  Identities=20%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             cCCeEEEEEEecccC------------CCeeEEEeC--CEE---cc-ccceeeE---E--EEEec---CceEEEEEEEcc
Q psy9150          11 LGHKIVFICMAKGKP------------RPHITWFKD--GVE---LY-THMYVNL---H--EWHYG---TDRIKSKIEIDP   64 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~------------~p~i~w~~~--~~~---~~-~~~~~~~---~--~~~~~---~~~~~~~l~i~~   64 (97)
                      .|+++.|.|......            .+.+.|++.  +..   +. .......   .  .....   ......+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            478999999986432            458999973  211   10 0000000   0  01111   122467899999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ++.+|+|.|.|.+.+........+.|.+.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999776767776666653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.99  E-value=3.5e-08  Score=47.34  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      ..+|.|..++..|.|.|.|.+.+..+.....+.|.|
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            457999999999999999999987777666666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.99  E-value=2.1e-08  Score=45.27  Aligned_cols=58  Identities=31%  Similarity=0.676  Sum_probs=40.0

Q ss_pred             eEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150          14 KIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus        14 ~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .+.|.|.+.+.+ .+.+.|+ +......       ............|.+..+..+|.|.|.|.+.|
T Consensus        17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   17 SVTLTCSAEGGPPPPSISWY-DSNPSFN-------SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSEESSEEEEEE-TEEEEEE-------EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eEEEEEEEccccCCeEEEEE-ecCCcee-------eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            399999998877 7889999 1111100       00111222366899999999999999999875

...

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.97  E-value=9.8e-09  Score=48.73  Aligned_cols=74  Identities=24%  Similarity=0.450  Sum_probs=49.1

Q ss_pred             EcCCeEEEEEEeccc-C-CCeeEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          10 VLGHKIVFICMAKGK-P-RPHITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~-~p~i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..|..+.|.|.+.|+ | ...+.|+++|..+..... ..............+.|.+......+.+.|.|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            357889999999998 4 357999999988764432 1111111111223456777766667899999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.97  E-value=1.1e-07  Score=46.57  Aligned_cols=84  Identities=20%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             cCCeEEEEEEecccC----------CCeeEEEeC--CEEcc----ccceeeE---EEEE--e---cCceEEEEEEEccCC
Q psy9150          11 LGHKIVFICMAKGKP----------RPHITWFKD--GVELY----THMYVNL---HEWH--Y---GTDRIKSKIEIDPAT   66 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~----------~p~i~w~~~--~~~~~----~~~~~~~---~~~~--~---~~~~~~~~l~i~~~~   66 (97)
                      +|+.+.|.|.....+          ...+.|++.  ++...    .......   ...+  .   .......+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999986543          256999984  22111    0000000   0001  0   112235679999999


Q ss_pred             CCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150          67 QMDAGIYECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      .+|.|.|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999988766677777776653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.95  E-value=9.4e-09  Score=48.60  Aligned_cols=66  Identities=18%  Similarity=0.286  Sum_probs=48.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ...+..|+++.|.|... .+...+.|+++|....... .       ........|.+..++.+|.|.|+|...+.
T Consensus        10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~-------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-P-------PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-c-------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            34577899999999874 5677789999886533211 0       11122457999999999999999999876

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.94  E-value=3.4e-08  Score=45.93  Aligned_cols=69  Identities=23%  Similarity=0.298  Sum_probs=45.4

Q ss_pred             EEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEec-CceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          15 IVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYG-TDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        15 ~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.|.|.+.+. |.+.|.|+++|..+..... ........ .....+.+.+.....++...|.|.+.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            5789999764 8889999999988764321 11111111 11124566666666777899999999887543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.94  E-value=1.1e-08  Score=49.68  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=49.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-CCeeEEEeC--CEE---cccc-ceee---EEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-RPHITWFKD--GVE---LYTH-MYVN---LHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~--~~~---~~~~-~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      .+..+.+.+|+.+.|.|.+.+.. ...+.|++.  |..   +... ....   ...+..........|.|.+++.+|+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence            45567889999999999987654 567999973  221   1100 0000   000011111224579999999999999


Q ss_pred             EEEEEEcC
Q psy9150          73 YECYADNM   80 (97)
Q Consensus        73 y~c~~~~~   80 (97)
                      |.|.+.+.
T Consensus        86 Y~Ca~~~~   93 (106)
T cd04980          86 YYCQQYGT   93 (106)
T ss_pred             EEEEEeCC
Confidence            99998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.94  E-value=2e-08  Score=49.04  Aligned_cols=79  Identities=15%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEccc----c-ceeeE------EEEEecC-ceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELYT----H-MYVNL------HEWHYGT-DRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~~----~-~~~~~------~~~~~~~-~~~~~~l~i~~~~~   67 (97)
                      +++..+.+.+|+.+.|.|...+ +.+.+.||+..  .....    . .....      ..+.... ......|.|..++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3556788999999999999987 77889999832  21110    0 00000      0000011 11245799999999


Q ss_pred             CCCEEEEEEEEcCC
Q psy9150          68 MDAGIYECYADNMY   81 (97)
Q Consensus        68 ~~~g~y~c~~~~~~   81 (97)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999987653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.93  E-value=7.3e-08  Score=47.47  Aligned_cols=80  Identities=24%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccC----CCeeEEEeC----CEE--cc-c-c-------ceeeEE-EEEecCceEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP----RPHITWFKD----GVE--LY-T-H-------MYVNLH-EWHYGTDRIKSKIEID   63 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~----~~~--~~-~-~-------~~~~~~-~~~~~~~~~~~~l~i~   63 (97)
                      +..+.+..|+.+.|.|.....+    ...+.|++.    +..  +. . .       ..+... .+.........+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4678899999999999985432    235999751    111  10 0 0       000000 0000111224579999


Q ss_pred             cCCCCCCEEEEEEEEcCCCc
Q psy9150          64 PATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .++.+|.|.|.|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.92  E-value=6.8e-08  Score=46.10  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=47.8

Q ss_pred             CeEEEEEEecccC---CCeeEEEeCCEE----cc---cc------c--eeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150          13 HKIVFICMAKGKP---RPHITWFKDGVE----LY---TH------M--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus        13 ~~~~l~c~~~~~~---~p~i~w~~~~~~----~~---~~------~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      +.+.|.|.....+   ...+.|++....    +.   ..      .  ..+..  .........+|.|.+++.+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~--~~~~~~~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVS--FLNSSLEDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEE--EeCCCCCceEEEEccCCcccCEEEE
Confidence            3578999986543   446999984321    10   00      0  00110  0011113568999999999999999


Q ss_pred             EEEEc-CCCceeEEEEEEE
Q psy9150          75 CYADN-MYNVDTRTFKTDF   92 (97)
Q Consensus        75 c~~~~-~~g~~~~~~~~~~   92 (97)
                      |.+.. +.|.....+.|.|
T Consensus        79 C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          79 CEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEeCCCCcEEEEEEEEe
Confidence            99875 5677777776654

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.91  E-value=5.1e-08  Score=45.35  Aligned_cols=69  Identities=22%  Similarity=0.361  Sum_probs=44.1

Q ss_pred             EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.|.|.+.| +|...+.|+++|..+...................+.+.+..-...+...|.|.+.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            578999976 567779999999987543221111100011123456777666666778999999987654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.90  E-value=1.9e-07  Score=45.68  Aligned_cols=38  Identities=16%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             EEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          56 IKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        56 ~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ...+|.|.+++.+|.|.|.|.+..........+.|.|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            46789999999999999999999866556666666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.88  E-value=1.8e-07  Score=46.11  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccC----CCeeEEEeCCE------Ecc-c---------cceeeE-EEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP----RPHITWFKDGV------ELY-T---------HMYVNL-HEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~~~------~~~-~---------~~~~~~-~~~~~~~~~~~~~l~i   62 (97)
                      +..+.+..|+.+.|.|......    ...+.|++...      .+. .         ..++.. ............+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4567788999999999885432    24599986211      110 0         000000 0000011112467999


Q ss_pred             ccCCCCCCEEEEEEEEcCCCc
Q psy9150          63 DPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+|.|.|.|.+.+....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.88  E-value=4.1e-08  Score=47.35  Aligned_cols=73  Identities=14%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             eEEEcCCeEEEEEEeccc-CCCeeEEEeCCE--E---cc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           7 YEYVLGHKIVFICMAKGK-PRPHITWFKDGV--E---LY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      +.+.+|+.+.|.|.+... +...+.|++...  .   +.            ...+..+..   .......+|.|.+++.+
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~   77 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPE   77 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHH
Confidence            357789999999999775 667799998322  1   10            001111110   11113457999999999


Q ss_pred             CCEEEEEEEEcCCC
Q psy9150          69 DAGIYECYADNMYN   82 (97)
Q Consensus        69 ~~g~y~c~~~~~~g   82 (97)
                      |.|.|.|.+.+..+
T Consensus        78 D~G~Y~C~v~~~~~   91 (105)
T cd00099          78 DSAVYYCAVSLSGG   91 (105)
T ss_pred             HCEEEEEEEecCCC
Confidence            99999999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.86  E-value=1.4e-07  Score=43.88  Aligned_cols=77  Identities=14%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .-.+..|+.+.|.|.....+.|  .+.|...+........           ....+|.+..+...|+|.|.|.+...  .
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~--~   74 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVN--S   74 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEEC--c
Confidence            3457789999999999554444  8999875544221100           11347888999999999999999754  3


Q ss_pred             eeEEEEEEEEEe
Q psy9150          84 DTRTFKTDFSIT   95 (97)
Q Consensus        84 ~~~~~~~~~~~~   95 (97)
                      ....+.+.|.++
T Consensus        75 k~~~~~~~V~Vl   86 (88)
T cd07694          75 SEKTLKLDIKVL   86 (88)
T ss_pred             eEEEEEeeEEEE
Confidence            333455555554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.85  E-value=5.2e-08  Score=46.59  Aligned_cols=83  Identities=16%  Similarity=0.152  Sum_probs=52.1

Q ss_pred             EcCCeEEEEEEecc-cCCCeeEEEeCCEEccccce----ee--E----EEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150          10 VLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMY----VN--L----HEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus        10 ~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~----~~--~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ..|+++.|.|.... .....+.|++....+.....    ..  .    ...+..-.....+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36899999998754 44567999986432221100    00  0    00111111224679999999999999999998


Q ss_pred             cCCCce-eEEEEEEE
Q psy9150          79 NMYNVD-TRTFKTDF   92 (97)
Q Consensus        79 ~~~g~~-~~~~~~~~   92 (97)
                      ...|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            877654 55666654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.85  E-value=5.3e-08  Score=45.93  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccc-------eeeEE----EEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHM-------YVNLH----EWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      |+.+.|.|.........+.|++.........       .....    ..+... ....+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~-~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI-YPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE-cCCceEEEccCCchhcEEEEEEEEcC
Confidence            6789999998776667899998543221100       00000    000000 01357999999999999999999887


Q ss_pred             CCc-eeEEEEE
Q psy9150          81 YNV-DTRTFKT   90 (97)
Q Consensus        81 ~g~-~~~~~~~   90 (97)
                      .+. ....+.|
T Consensus        80 ~~~~~~~~~~l   90 (92)
T cd05741          80 NGVTENAKFFL   90 (92)
T ss_pred             CCcEEEEEEEE
Confidence            643 3445544

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.82  E-value=1.3e-07  Score=46.58  Aligned_cols=75  Identities=15%  Similarity=0.299  Sum_probs=50.0

Q ss_pred             CCceeeEEEcCCeEEEEEEecc--cCCCeeEEEeC--CEEcc------c-----------cceeeEEEEEecCceEEEEE
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKG--KPRPHITWFKD--GVELY------T-----------HMYVNLHEWHYGTDRIKSKI   60 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~--~~~~~------~-----------~~~~~~~~~~~~~~~~~~~l   60 (97)
                      +.+..+.+.+|+.+.|.|...+  .+.+.+.|++.  +....      .           ..++.+.  . ........|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~--~-~~~~~~~~L   79 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEAR--K-DVGKSTSTL   79 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEE--E-ECCCCEEEE
Confidence            3566778899999999999876  57788999983  22110      0           0111110  0 010124579


Q ss_pred             EEccCCCCCCEEEEEEEEc
Q psy9150          61 EIDPATQMDAGIYECYADN   79 (97)
Q Consensus        61 ~i~~~~~~~~g~y~c~~~~   79 (97)
                      .|.+++.+|+|.|.|.+..
T Consensus        80 ~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          80 TIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEECCHHHCEEEEEEEec
Confidence            9999999999999998864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.80  E-value=3.4e-07  Score=44.01  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=28.7

Q ss_pred             EEEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEEEE
Q psy9150          56 IKSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTDF   92 (97)
Q Consensus        56 ~~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~~~   92 (97)
                      ...+|.|.+++.+|.|.|.|.+.+ +.|.....+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            356799999999999999999987 5666555555443

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.79  E-value=1e-07  Score=45.59  Aligned_cols=73  Identities=12%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             EEEcCCeEEEEEEeccc--CCCeeEEEeC--CEEccc----c-ce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           8 EYVLGHKIVFICMAKGK--PRPHITWFKD--GVELYT----H-MY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~~~~~----~-~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      .+.+|+++.|.|...+.  ....+.||+.  +.....    . ..  .....+..........|.|..++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998664  4567999972  221110    0 00  000001111222355799999999999999998


Q ss_pred             EEcC
Q psy9150          77 ADNM   80 (97)
Q Consensus        77 ~~~~   80 (97)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.77  E-value=1.9e-07  Score=45.28  Aligned_cols=85  Identities=14%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEE-----ccc---cceeeEEEEEecCc---eEEEEEEEccCCCCCCEEEE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVE-----LYT---HMYVNLHEWHYGTD---RIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~-----~~~---~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ...+.+|+.+.|.|.........+.|++....     +..   ..............   ..+.+|.|.+++..|.|.|.
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence            44577899999998765444447999995221     110   00000000000000   01348999999999999999


Q ss_pred             EEEEcCCC-ceeEEEEE
Q psy9150          75 CYADNMYN-VDTRTFKT   90 (97)
Q Consensus        75 c~~~~~~g-~~~~~~~~   90 (97)
                      |.+.+... .......+
T Consensus        87 ~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          87 LQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEeCCccEEEEEEEE
Confidence            99988764 33444433

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.76  E-value=5.3e-07  Score=43.07  Aligned_cols=81  Identities=16%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             CCeEEEEEEecccCC-CeeEEEeCCE----Ecc---c-c-----ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150          12 GHKIVFICMAKGKPR-PHITWFKDGV----ELY---T-H-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus        12 g~~~~l~c~~~~~~~-p~i~w~~~~~----~~~---~-~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      |+.+.|.|....... -.+.|++...    .+.   . .     ..+..............+|.|.+++.+|.|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998754332 3599987321    110   0 0     001000001112223567999999999999999997


Q ss_pred             E-cCCCceeEEEEEEE
Q psy9150          78 D-NMYNVDTRTFKTDF   92 (97)
Q Consensus        78 ~-~~~g~~~~~~~~~~   92 (97)
                      . .+.|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 45677777766654

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.75  E-value=1.5e-06  Score=42.85  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ..+|.|.+++..|.|.|.|.+..........+.|.+.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            5789999999999999999999888777777777765

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>KOG4194|consensus

Probab=98.75  E-value=6e-08  Score=59.14  Aligned_cols=83  Identities=23%  Similarity=0.402  Sum_probs=62.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      |.++..+..|+.+.+.|.+.+.|+ |.+.|+++.+++....+...     ..  ....+.+.....+|.|.|+|.+.+..
T Consensus       712 PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f-----~d--~dQllvv~~~~~~daG~yTcem~~~~  784 (873)
T KOG4194|consen  712 PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF-----PD--GDQLLVVKENLVEDAGIYTCEMSNTL  784 (873)
T ss_pred             cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccC-----CC--CCeEEEEEehhhhhcceEEEEEEeec
Confidence            446778899999999999999887 99999998877654332211     11  13467777888999999999999998


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.+.+
T Consensus       785 ~~~~~~i~l~~  795 (873)
T KOG4194|consen  785 GTERIHICLLV  795 (873)
T ss_pred             cceeeEEEEEE
Confidence            88766554443

>KOG4221|consensus

Probab=98.75  E-value=1.5e-07  Score=60.80  Aligned_cols=72  Identities=22%  Similarity=0.389  Sum_probs=59.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+..|+.+.|.|.+.+.+.|.+.|.++..++....++..-.        +..|.|..+...|.|.|.|.+.+..-+.
T Consensus       148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp--------sG~L~I~~~qp~d~g~yrc~vt~g~~~r  219 (1381)
T KOG4221|consen  148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP--------SGALEISGLQPSDTGEYRCVVTGGASQR  219 (1381)
T ss_pred             cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC--------CCcEEecccccCCCceEEEEEecCCcCC
Confidence            46678899999999999999999999999988777655433211        4589999999999999999999876554

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.74  E-value=3.3e-07  Score=44.53  Aligned_cols=78  Identities=12%  Similarity=0.186  Sum_probs=50.0

Q ss_pred             CceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCE-----Ecc--ccceeeEE-EE--------EecCceEEEEEEEccC
Q psy9150           3 SHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGV-----ELY--THMYVNLH-EW--------HYGTDRIKSKIEIDPA   65 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~-----~~~--~~~~~~~~-~~--------~~~~~~~~~~l~i~~~   65 (97)
                      ++..+.+.+|+.+.|.|... ......+.|++...     .+.  ........ ..        .........+|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            35678899999999999998 45566799998211     111  00000000 00        0011112457999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy9150          66 TQMDAGIYECYADNM   80 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~   80 (97)
                      +..|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999998876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.72  E-value=3.3e-07  Score=43.00  Aligned_cols=73  Identities=21%  Similarity=0.399  Sum_probs=45.0

Q ss_pred             CCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        12 g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      |+.+.+.|.+ .++|.|.|.|+.++..+...................+.|.+..-...+...+.|.+.+.....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            5689999976 678899999999887762111111110000111224567776655566788999999876544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.72  E-value=4.2e-07  Score=43.23  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=45.9

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ...+..|++++|.|.... ..-.+.|++++.......   ..  ..........+.|..++..|+|.|.|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---LY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---cc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            456778999999998754 455689999876532110   00  00112235578999999999999999865

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00096 Ig Immunoglobulin domain

Probab=98.71  E-value=1.1e-06  Score=38.48  Aligned_cols=65  Identities=34%  Similarity=0.570  Sum_probs=44.3

Q ss_pred             EEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        16 ~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+.|.+.+.+...+.|++.+......... ..............+.+..+...|.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            57899988778889999987665433211 000011122335678999999999999999988765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.70  E-value=8.6e-07  Score=46.72  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             eeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccc--cceeeEE-----EEE-ecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           6 DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYT--HMYVNLH-----EWH-YGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~--~~~~~~~-----~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      .+.+.+|+.+.|.|... +...+.+.|++....+..  .......     ... .........+.|.+++.+|.|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            56789999999999984 666888999985332210  0000000     000 01112246799999999999999998


Q ss_pred             EEc-CCC-ceeEEEEEEEE
Q psy9150          77 ADN-MYN-VDTRTFKTDFS   93 (97)
Q Consensus        77 ~~~-~~g-~~~~~~~~~~~   93 (97)
                      +.- +.| ..+....|.++
T Consensus       104 F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEecCCCCCceeEEEEEEE
Confidence            764 455 55666666654

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.69  E-value=2.2e-06  Score=41.18  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTDF   92 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~~~   92 (97)
                      ..+|.|.+++..|.|.|.|.+.+ +.|+.+..+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            46899999999999999999998 6777777766654

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>KOG4222|consensus

Probab=98.63  E-value=1.7e-07  Score=60.19  Aligned_cols=73  Identities=29%  Similarity=0.524  Sum_probs=57.9

Q ss_pred             eeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .++.+..|+.+.+.|.. .+.|.|.+.|.++|..+....  .....        ....|.|.+++..|.|+|.|++.|..
T Consensus       139 rd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li--------sgG~LlIsnvrksD~GtY~CVatNmv  210 (1281)
T KOG4222|consen  139 RDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI--------SGGNLLISNVRKSDEGTYACVATNMV  210 (1281)
T ss_pred             ccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe--------cCCcEEEeccccCCCceeeeeecccc
Confidence            45777889999999997 788999999999999887221  11111        13479999999999999999999999


Q ss_pred             Ccee
Q psy9150          82 NVDT   85 (97)
Q Consensus        82 g~~~   85 (97)
                      |.+.
T Consensus       211 G~Re  214 (1281)
T KOG4222|consen  211 GERE  214 (1281)
T ss_pred             cccc
Confidence            9753

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.62  E-value=2.2e-06  Score=40.93  Aligned_cols=72  Identities=19%  Similarity=0.183  Sum_probs=46.2

Q ss_pred             eEEEcCCeEEEEEEecc-cCCCeeEEEeCCEE-----cc--------ccceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           7 YEYVLGHKIVFICMAKG-KPRPHITWFKDGVE-----LY--------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      +.+.+|+++.|.|.... .....+.|++....     +.        ...+..+.   .........|.|..++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT---DDPDNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE---ecCCCCEEEEEEcCCCHHHCEE
Confidence            46788999999999864 34567899984311     10        00111111   0111234579999999999999


Q ss_pred             EEEEEEcCC
Q psy9150          73 YECYADNMY   81 (97)
Q Consensus        73 y~c~~~~~~   81 (97)
                      |.|.+....
T Consensus        79 Y~C~~~~~~   87 (98)
T cd05716          79 YWCGVGDDG   87 (98)
T ss_pred             EEEEcccCC
Confidence            999876543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.61  E-value=1.8e-06  Score=39.35  Aligned_cols=67  Identities=19%  Similarity=0.389  Sum_probs=41.1

Q ss_pred             EEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          15 IVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        15 ~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.|.|.+.|+.++  .+.|+++|..+...... .............+.|.+......+...|.|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5789999987444  68999999874332111 1111111122235567776666677789999987654

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.59  E-value=3.2e-06  Score=41.43  Aligned_cols=73  Identities=18%  Similarity=0.274  Sum_probs=43.9

Q ss_pred             EEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEec-CceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           9 YVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG-TDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...|+.+.|.|.+.++.++  .+.|++||..+..... ........ .....+.|.+.....+....|.|.+.+...
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence            3467778999999887654  6899999998754221 11111100 112244566665433333469999988653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.55  E-value=2.9e-06  Score=40.79  Aligned_cols=74  Identities=12%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             EEEcCCeEEEEEEecc-cCCCe--eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           8 EYVLGHKIVFICMAKG-KPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~-~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+.+|+.+.+.|.+.+ .|.+.  |.||+++..+.......   ..........++.+...+.++...|.|.+.+.....
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            3578999999999965 56666  69999998886432111   000112234567776666666678999999876653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.54  E-value=5.8e-06  Score=39.42  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             CeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          13 HKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        13 ~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      ....+.|.+ .+.|.+.|.|+++....   ................+.|.+.....++...+.|.+.+........+.+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            456778987 57899999999872111   11111000001112355677766666778889999999876655555544


Q ss_pred             E
Q psy9150          92 F   92 (97)
Q Consensus        92 ~   92 (97)
                      +
T Consensus        93 l   93 (95)
T cd07703          93 L   93 (95)
T ss_pred             E
Confidence            4

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.53  E-value=9.6e-06  Score=40.19  Aligned_cols=77  Identities=13%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccC------CCeeEEEeCC--E---E-cc--ccc-----eeeEEEEEe--cCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP------RPHITWFKDG--V---E-LY--THM-----YVNLHEWHY--GTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~------~p~i~w~~~~--~---~-~~--~~~-----~~~~~~~~~--~~~~~~~~l~   61 (97)
                      .+..+.+..|+.+.|.|......      ...+.|++..  .   . ..  ...     .+.. ....  .......+|.
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~g-R~~~~~~~~~~~~sL~   83 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRG-RFRLLGDLGKKNCSLL   83 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccc-cEEEecCCCCCEEEEE
Confidence            45678899999999999874221      2458999832  1   1 10  000     0000 0011  1223356899


Q ss_pred             EccCCCCCCEEEEEEEEcC
Q psy9150          62 IDPATQMDAGIYECYADNM   80 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~   80 (97)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.53  E-value=3.2e-06  Score=41.09  Aligned_cols=72  Identities=17%  Similarity=0.347  Sum_probs=43.4

Q ss_pred             EEEcCCeEEEEEEeccc-CCCeeEEEe--CC---EEcc-----ccceeeE-------EEEEe--cCceEEEEEEEccCCC
Q psy9150           8 EYVLGHKIVFICMAKGK-PRPHITWFK--DG---VELY-----THMYVNL-------HEWHY--GTDRIKSKIEIDPATQ   67 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~-~~p~i~w~~--~~---~~~~-----~~~~~~~-------~~~~~--~~~~~~~~l~i~~~~~   67 (97)
                      .+.+|+.+.|.|...+. ....+.||+  .|   +.+.     .......       ..+..  ........|.|..++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998653 345799998  22   1100     0000000       00000  1112244699999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.53  E-value=7.1e-06  Score=39.20  Aligned_cols=36  Identities=17%  Similarity=0.214  Sum_probs=30.7

Q ss_pred             EEEEEEccCCCCCCEEEEEEEE-cCCCceeEEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYAD-NMYNVDTRTFKTDF   92 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~-~~~g~~~~~~~~~~   92 (97)
                      ..+|.|.+++..|.|.|.|.+. .+.|+.+....|.+
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            5689999999999999999975 56788888887765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.52  E-value=1.2e-06  Score=41.71  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ....+.|.|.+.|+.++  .+.|.++|..+...... .............+.|.+......+...|.|.+........
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   90 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE   90 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence            44568999999997665  47899999876322111 11000001112244555554444456789999988765543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.50  E-value=2.3e-06  Score=42.16  Aligned_cols=75  Identities=15%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeC--CEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKD--GVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      ++..+.+..|+.+.|.|..... ....+.|++.  +....   .         ..++.+.  . .......+|.|..++.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~--~-~~~~~~~sL~I~~~~~   81 (116)
T cd07706           5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVN--F-QKAQKSISLTISALQL   81 (116)
T ss_pred             eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEE--E-eccCCEEEEEECCCCH
Confidence            4567889999999999998653 4566999982  22110   0         0111111  0 0111245799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~Y~C~~~~~   94 (116)
T cd07706          82 EDSAKYFCALSTL   94 (116)
T ss_pred             HHCEEEEEEEECC
Confidence            9999999998753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4222|consensus

Probab=98.49  E-value=2.5e-07  Score=59.55  Aligned_cols=82  Identities=27%  Similarity=0.449  Sum_probs=63.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+++.+..|..+.+.|.+.|.|.|.+.|.+++..++...+.....        ..++.|.++...|.|.|.|.+.|..|
T Consensus       231 rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d--------~qtl~i~r~tp~deg~y~C~a~n~vG  302 (1281)
T KOG4222|consen  231 RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDD--------TQTLRIDRVTPTDEGTYVCPAENLVG  302 (1281)
T ss_pred             ccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeec--------cccccccccCCCcccceeeecccccc
Confidence            3457778888889999999999999999999777776543322210        35789999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .......+.|
T Consensus       303 ~l~asa~ltV  312 (1281)
T KOG4222|consen  303 GLEASATLTV  312 (1281)
T ss_pred             ccccccceEE
Confidence            8665544444

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.46  E-value=1.1e-05  Score=38.47  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             CeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          13 HKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        13 ~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      ......|.+ .|+|.+.|.|+++..   ..................+.|.+.....++...|.|.+.+........+.+
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~   91 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSV   91 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            356678998 688999999998611   111111100000112225567776666777788999999987655444433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.45  E-value=8.5e-06  Score=38.64  Aligned_cols=69  Identities=20%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ++.+.|.|.+.|+.++  .+.|.+++......... .............+.+.+..   .+...|.|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence            5679999999997655  68999998643222111 11100000111233444443   3678999999876543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.42  E-value=3.6e-06  Score=40.74  Aligned_cols=71  Identities=13%  Similarity=0.238  Sum_probs=43.4

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeC--C--EEc---c-cc--ceee-------EEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKD--G--VEL---Y-TH--MYVN-------LHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~--~--~~~---~-~~--~~~~-------~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      +..|+.+.|.|.........+.|++.  +  ...   . ..  ....       ...+..........|.|..++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            56799999999986555566999982  2  111   0 00  0000       00011111123457999999999999


Q ss_pred             EEEEEEEc
Q psy9150          72 IYECYADN   79 (97)
Q Consensus        72 ~y~c~~~~   79 (97)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.42  E-value=1.1e-06  Score=42.51  Aligned_cols=73  Identities=16%  Similarity=0.345  Sum_probs=43.6

Q ss_pred             cCCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEe----cCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHY----GTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+..+.|.|.+.|+.++.  +.|+++|..+.............    ......+.|.+..-...+...|.|.+......
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~   93 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALP   93 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCC
Confidence            467899999999977665  69999998865332111100000    11122445666544334556799999876543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.40  E-value=1.4e-05  Score=40.55  Aligned_cols=72  Identities=17%  Similarity=0.314  Sum_probs=43.3

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccc----cceee---EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYT----HMYVN---LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .|..+.|.|.+.|.+++  .+.|++++.....    .....   ............+.|.+......+...|.|.+.+..
T Consensus        52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            57778999999986543  7999998754221    01111   000000112234567777666666789999998765


Q ss_pred             C
Q psy9150          82 N   82 (97)
Q Consensus        82 g   82 (97)
                      .
T Consensus       132 l  132 (139)
T cd05771         132 L  132 (139)
T ss_pred             C
Confidence            4

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.39  E-value=2.5e-06  Score=40.75  Aligned_cols=76  Identities=11%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             EEcCCeEEEEEEeccc-CCCe--eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGK-PRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~-~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +..++.+.|.|.+.|+ .++.  +.|.++++.....................+.+.+......+...|.|.+.......
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~   89 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT   89 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence            4457889999999998 5554  78999874322110000000000111224455555443334567999998876443

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.38  E-value=2.2e-05  Score=37.31  Aligned_cols=65  Identities=20%  Similarity=0.334  Sum_probs=40.3

Q ss_pred             CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCce---EEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDR---IKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      |....|.|.+.|+.++.  +.|.++|..+. .......  ....+.   ....|.+.   ..+...|.|.+.....
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~--~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l   84 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDL--SFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSM   84 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcE--EECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCC
Confidence            44568999999987665  68999999876 3221111  112221   23334444   4567789999987543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.35  E-value=6.1e-06  Score=39.72  Aligned_cols=72  Identities=13%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE-EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.|+.+.  .+.|+++|..+........ ...........+.|.+......+...|.|.+.....
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            45678999999886644  4799999988753221111 100011122244565655544456789999987654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.33  E-value=3.1e-05  Score=36.87  Aligned_cols=70  Identities=23%  Similarity=0.333  Sum_probs=42.2

Q ss_pred             cCCeEEEEEEecccCCCe--eEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+....|.|.+.|+.++.  +.|+++|..+...... .............+.|.+.   .++...|.|.+......
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence            577899999999976664  6899999886543111 1111100111223344444   34566899999876544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.32  E-value=2.8e-05  Score=37.16  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=27.6

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKT   90 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~   90 (97)
                      ..++.|.+++.+|.|.|.|.+.. +.|...+.+.+
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            56899999999999999998865 57777766544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.31  E-value=3.1e-05  Score=35.92  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCce--EEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDR--IKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.|.|.+.++.+.  .+.|++++..+........... ..+..  ..+.+.+.   ..+...|.|.+......
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP-NSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE-ETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc-ccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            7789999999887655  4889999988765433222211 12222  24445555   44556899999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.30  E-value=6.9e-06  Score=40.52  Aligned_cols=78  Identities=17%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEec--CceEEEEEEEccCCCCC-CEEEEEEEEcCCCcee
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG--TDRIKSKIEIDPATQMD-AGIYECYADNMYNVDT   85 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~-~g~y~c~~~~~~g~~~   85 (97)
                      .+..+.|.|.+.++.++  .+.|++++..+..............  .....+.|.+......+ ...|.|.+........
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~   96 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT   96 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence            35568999999997666  5799999988764321110000101  12224556666544333 5689999988766555


Q ss_pred             EEE
Q psy9150          86 RTF   88 (97)
Q Consensus        86 ~~~   88 (97)
                      ..+
T Consensus        97 ~~~   99 (115)
T cd05769          97 DKW   99 (115)
T ss_pred             eee
Confidence            433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.29  E-value=2.9e-05  Score=36.99  Aligned_cols=66  Identities=23%  Similarity=0.392  Sum_probs=40.2

Q ss_pred             CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCc---eEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTD---RIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +....|.|.+.|+.+..  +.|.++|..+.........  ....+   ...+.|.+..   .+...|.|.+.....
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~--~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l   85 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRY--YPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeee--EeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence            44578999999977654  6899999887543211111  11211   1234455543   355689999987643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03376 BARF1; Provisional

Probab=98.27  E-value=6.6e-05  Score=40.04  Aligned_cols=76  Identities=16%  Similarity=0.132  Sum_probs=46.6

Q ss_pred             eeEEEcCCeEEEEEEeccc---CCCeeEEEeCCE----Ecc---------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGK---PRPHITWFKDGV----ELY---------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      .+.+..|+.+.|.|.....   ..-.|.|++.+.    -+-         +...++....... +..+-+|.|.+++.+|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~-~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR-SANTFFLVVTAANISH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe-cCCeEEEEEEeeeecC
Confidence            4567789999999997522   233588999432    111         1111111111111 1135689999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.......
T Consensus        99 dGtY~C~fQkge~  111 (221)
T PHA03376         99 DGNYLCRMKLGET  111 (221)
T ss_pred             CceEEEEEEcCCC
Confidence            9999999876543

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.26  E-value=2.1e-05  Score=38.88  Aligned_cols=76  Identities=16%  Similarity=0.230  Sum_probs=45.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-cee---eE--EEEEecCc--eEEEEEEEccC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-MYV---NL--HEWHYGTD--RIKSKIEIDPA   65 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-~~~---~~--~~~~~~~~--~~~~~l~i~~~   65 (97)
                      +..+.+..|+.+.|.|......  ...+.||+  .|+...      .. ...   ..  ..+.....  .....|.|..+
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4567788999999999875433  45689998  222110      00 000   00  00011101  11336999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|+|.|.|....
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.16  E-value=5.3e-05  Score=36.24  Aligned_cols=66  Identities=8%  Similarity=0.109  Sum_probs=39.1

Q ss_pred             CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCceE--EEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRI--KSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +..+.|.|.+.++.++.  +.|.++|..+.........  ....+.+  .+.|.+..-.  ....|.|.+....
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~--~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEK--DKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccE--ecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            45689999999977665  6899999886543211111  1122222  3345544332  2345999998744

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.00  E-value=7.8e-05  Score=33.96  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.1

Q ss_pred             EEEEEEccCCCCCCEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~   76 (97)
                      ..+|.|.+++.+|.|.|.|.
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       61 DVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEEcCCCHHHCEEEEEc
Confidence            46799999999999999995

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.97  E-value=0.00019  Score=34.29  Aligned_cols=70  Identities=11%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             cCCeEEEEEEecccCCCe--eEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .++.+.|.|.+.++.+..  +.|.++|.. ...... .............+.|.+....-.....|.|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            355689999999976654  689999987 322111 0000001112224445555432223567999998765

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.92  E-value=0.00036  Score=33.47  Aligned_cols=76  Identities=17%  Similarity=0.229  Sum_probs=46.6

Q ss_pred             eeeEEEcCCeEEE-EEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           5 FDYEYVLGHKIVF-ICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         5 ~~~~~~~g~~~~l-~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+.+.+|+.+.+ .|.+ .|.|++.|.|+.+......   ..............+.+.+...+..+...+.|.+.+..-
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            3456667777777 7776 7889999999975322111   111100001122345677766667778889999988755


Q ss_pred             c
Q psy9150          83 V   83 (97)
Q Consensus        83 ~   83 (97)
                      .
T Consensus        86 ~   86 (97)
T cd07704          86 Q   86 (97)
T ss_pred             C
Confidence            3

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.83  E-value=7.3e-05  Score=37.99  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             EEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          59 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        59 ~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      +|.|.+++..|.|.|.|.+.+..+.....+.|.+.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~   36 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS   36 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe
Confidence            58899999999999999999888877777766653

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.71  E-value=0.00033  Score=33.73  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=39.1

Q ss_pred             cCCeEEEEEEecccC-C--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKP-R--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~-~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.+.|.+.++. +  -.+.|.++|.. . .................+.|.+..-.-.....|.|.+.+...
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            466789999999866 3  35889998865 1 110000000001112244555553333444679999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.68  E-value=0.00074  Score=30.16  Aligned_cols=49  Identities=22%  Similarity=0.491  Sum_probs=33.3

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .+.+.|.|..    ...|.|++ |..+....              ..++.+-....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence            3468889965    25599999 54443221              23566677777889999998765

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.67  E-value=0.00056  Score=30.27  Aligned_cols=52  Identities=25%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ...|..+.|.|+...   ..+.|.+++..+....               ..+...+-. +++|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~---------------~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSD---------------EKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCC---CCceEEeCCccCCCCC---------------ceEEeeccC-CCCceEEEEeCC
Confidence            456889999998653   2299999885554311               112222222 678999998854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02633 hypothetical protein; Provisional

Probab=97.61  E-value=0.00061  Score=29.77  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             EEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        58 ~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ..|.|.++..+|+|.|.|...|..--....+.++|.
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            358888899999999999998766555666666554

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.31  E-value=0.00054  Score=34.53  Aligned_cols=83  Identities=11%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEecc-----cCCCeeEEEeCCEEccccceeeEEE-E-------EecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150          11 LGHKIVFICMAKG-----KPRPHITWFKDGVELYTHMYVNLHE-W-------HYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus        11 ~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      -++.+.++|.+..     .+.-.+.|..++..+.......... .       .........+|.+.....- .|.|+|-+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            3678899999854     1234599999887664211100000 0       0000111334666553332 79999999


Q ss_pred             EcCCCceeEEEEEEEEE
Q psy9150          78 DNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        78 ~~~~g~~~~~~~~~~~~   94 (97)
                      ..........+.|.+.+
T Consensus       105 t~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen  105 TELSREGETTIELKYRV  121 (130)
T ss_dssp             EETTEEEEEEEEEEE--
T ss_pred             EecCCCceEEEEEEEEE
Confidence            98888888877777643

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.92  E-value=0.0089  Score=33.69  Aligned_cols=49  Identities=24%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             CCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          25 PRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        25 ~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..|...|.. +|..+......++..        ...|.+..-...++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEEe
Confidence            468889988 455565555555532        3469999999999999999987654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1480|consensus

Probab=96.66  E-value=0.001  Score=42.44  Aligned_cols=69  Identities=23%  Similarity=0.403  Sum_probs=50.5

Q ss_pred             EEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           8 EYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         8 ~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+....+.|.. .+.|...+.|++++..+++......        .....+++..++..|.|.|+|.+.|..+..
T Consensus       140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~--------~~d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR--------ASDHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             eecccccccccccCcccchhhhhhccccCCCCCccccchh--------hhcCCccccchhhhhcccceeeeehhhccc
Confidence            45556667777775 6778888999999877766322211        113467888999999999999999988765

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.56  E-value=0.03  Score=27.80  Aligned_cols=72  Identities=8%  Similarity=0.062  Sum_probs=42.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCC---eeEEEe--CCEEcc------c-cceeeEE----EEEecCceEEEEEEEccCCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP---HITWFK--DGVELY------T-HMYVNLH----EWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p---~i~w~~--~~~~~~------~-~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ...+..|..+.|.|...|....   .+.|++  ++ .+.      . .......    ..........-.|.+..++.+|
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            3456677889999999775433   478887  33 110      0 0000000    0011111224579999999999


Q ss_pred             CEEEEEEEE
Q psy9150          70 AGIYECYAD   78 (97)
Q Consensus        70 ~g~y~c~~~   78 (97)
                      .+.|.|...
T Consensus        86 Ta~Y~Ca~e   94 (115)
T cd05721          86 TDIYFCKIE   94 (115)
T ss_pred             CeEEEEEee
Confidence            999999654

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03042 CD47-like protein; Provisional

Probab=96.46  E-value=0.065  Score=30.55  Aligned_cols=71  Identities=21%  Similarity=0.344  Sum_probs=45.3

Q ss_pred             cCCeEEEEEEeccc-----CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          11 LGHKIVFICMAKGK-----PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        11 ~g~~~~l~c~~~~~-----~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      -++++.++|.+...     ..-.+.|..++..+......+           .+++.+.-.. .-.|.|+|-+.+......
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----------~aSL~~~f~~-~l~GNYTCEv~~l~n~gk   97 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----------TSSLKFNFSK-NLSGNYTCEAINKFNKIK   97 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----------ceEEEEeccc-cCCCceeEEEeecccCcc
Confidence            36788999998542     355699999988765432211           2344444322 337999999988766666


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ....+++.
T Consensus        98 ~~IeLk~~  105 (286)
T PHA03042         98 NTIELQYV  105 (286)
T ss_pred             EEEEEEEE
Confidence            66666553

>KOG3515|consensus

Probab=96.43  E-value=0.0026  Score=40.62  Aligned_cols=68  Identities=13%  Similarity=0.252  Sum_probs=45.6

Q ss_pred             eeEEEcCCeEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.+|+.+.|.|.+.+.| .+.+.|++.+..... .+.         .....+|......++..+.|.|.+.|..+.
T Consensus        16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~   84 (741)
T KOG3515|consen   16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG-RYA---------TIADPTLVTTGDVRDTVAELNCRAFNSVGM   84 (741)
T ss_pred             ChhhccCCcceeeeecCCCCCCcceEEEecCccccc-ccc---------cccCCceeeecchhhhhhhhhhhhcccccC
Confidence            33778899999999997665 456999997655441 111         111345666666666678888888887554

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.30  E-value=0.044  Score=26.81  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEcCCCce-eEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKTD   91 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~~~~~~~   91 (97)
                      ..+|.|..++.+|+|.|..-+.+..|.. .+.|.+.
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs  105 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS  105 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence            3479999999999999999999988886 3445443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4597|consensus

Probab=96.30  E-value=0.011  Score=36.10  Aligned_cols=82  Identities=15%  Similarity=0.055  Sum_probs=54.6

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEe---CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFK---DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +-.++...+.|.+.|.+.+.|.|.+   ++..+.........+   ........|.|-+....+.|-|.|.+.+..|...
T Consensus       208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~---p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVEN---PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             cccchhhcccccccCCcCceeeeehhhccccceeecCccccCC---cceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            3345677788999999999999975   333322111110000   0111234688888889999999999999999888


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.+.+.
T Consensus       285 rdv~c~s~  292 (560)
T KOG4597|consen  285 RDVPCSSV  292 (560)
T ss_pred             ccceeeee
Confidence            87766543

>KOG3515|consensus

Probab=95.94  E-value=0.05  Score=35.24  Aligned_cols=72  Identities=21%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             EEcCCeEEEEEEe--cccCCCeeEEEeCCEEccccce-eeEEEEEec-Cc-eEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           9 YVLGHKIVFICMA--KGKPRPHITWFKDGVELYTHMY-VNLHEWHYG-TD-RIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         9 ~~~g~~~~l~c~~--~~~~~p~i~w~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ...+..+.+.|..  .+.|.+.+.|..++........ ......... .. ...+.+.+...+..+.|.|+|.+.+.
T Consensus       109 ~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  109 QVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             hhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence            3455677788854  5678888999987765432221 011110001 11 11345666777788899999999984

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.67  E-value=0.17  Score=30.63  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             CceeeEEEcCCeEEEEEEecc---cCCCeeEEEeCCEEcccc-----------------c-eeeEEEEEecCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKG---KPRPHITWFKDGVELYTH-----------------M-YVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~---~~~p~i~w~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~l~   61 (97)
                      +...+.+..|.++.+.|..+-   .....+.|+..|-++.+.                 . ..-......+.+--.++|.
T Consensus       270 ~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLT  349 (500)
T PHA02914        270 KFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLT  349 (500)
T ss_pred             ccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEE
Confidence            445677777999999999853   345568897644333211                 0 1101111112233367899


Q ss_pred             EccCCCCCCEEEEEEEEcCC
Q psy9150          62 IDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~~   81 (97)
                      |..+.-...|-|.|.+....
T Consensus       350 Ikka~I~N~GCY~~~a~~g~  369 (500)
T PHA02914        350 IKKAHINNAGCYEAQAFMGK  369 (500)
T ss_pred             eeeEEEEcCCceEEEEecCc
Confidence            99999999999999987553

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.66  E-value=0.095  Score=25.36  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=38.2

Q ss_pred             EEEcCCeEEEEEEeccc-CC--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           8 EYVLGHKIVFICMAKGK-PR--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~-~~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..|..+.+.|.+.+. |.  ..+.|++....+........ ....+.......+.+...+.++...|.|.+.-...
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~-~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED-MDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc-cccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence            34689999999999653 33  35888876554432211000 00000011112334444344445589999875443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=95.60  E-value=0.098  Score=25.11  Aligned_cols=72  Identities=19%  Similarity=0.321  Sum_probs=41.2

Q ss_pred             EEEEEE-ecccCCCeeEEEe--CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          15 IVFICM-AKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        15 ~~l~c~-~~~~~~p~i~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      ..-.|. +.|.|++.|.|.-  +|.. .    .+.......-....+.+.+-.....+.....|.+.........++.|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e----tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-E----FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-e----eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            344688 4889999999974  3332 1    000000001111234455566667778889999988765555555543

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.38  E-value=0.12  Score=24.53  Aligned_cols=65  Identities=17%  Similarity=0.291  Sum_probs=39.0

Q ss_pred             eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      ....+..|+.+...|....     .....+.|..++..++...+..+     ...  .+...+........-.|.|.
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-----n~~--~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-----NDT--VSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-----STT--EEEEEESS--SSEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-----CCe--EEEEEEccCCCCCceEEEEE
Confidence            4556889999999999842     24567999998887776554432     222  24556666555444455554

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03052 Hypothetical protein; Provisional

Probab=94.79  E-value=0.15  Score=22.79  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=27.5

Q ss_pred             CceeeEEEcCCeEEEEEEeccc---CCCeeEEEeCCEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK---PRPHITWFKDGVEL   38 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~~~~   38 (97)
                      .+..+.+..|.++.+.|.+.-.   ..+.+.|..++..+
T Consensus         3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            3467788999999999998432   34458888888777

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.73  E-value=0.28  Score=29.04  Aligned_cols=21  Identities=10%  Similarity=0.468  Sum_probs=17.6

Q ss_pred             eEEEEEEecccCCCe--eEEEeC
Q psy9150          14 KIVFICMAKGKPRPH--ITWFKD   34 (97)
Q Consensus        14 ~~~l~c~~~~~~~p~--i~w~~~   34 (97)
                      .+.|.|.+.|+.+..  +.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            468999999987775  679998

>PHA02982 hypothetical protein; Provisional

Probab=92.92  E-value=0.92  Score=25.27  Aligned_cols=78  Identities=14%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             eeEEEcCCeEEEEEEec-ccCCCeeEEEeC-CEEcccc--ceeeEEE-----------EEecCceEEEEEEEccCCCCCC
Q psy9150           6 DYEYVLGHKIVFICMAK-GKPRPHITWFKD-GVELYTH--MYVNLHE-----------WHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~-~~~~~~~--~~~~~~~-----------~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ++..-.++.+.|.|... +.-.....|+.+ +..+...  ....+..           ...+-....++|.+..+..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            44555688999999963 233445778763 2222200  0000000           0111112267899999999999


Q ss_pred             EEEEEEEEcCCCc
Q psy9150          71 GIYECYADNMYNV   83 (97)
Q Consensus        71 g~y~c~~~~~~g~   83 (97)
                      |-|+|.+....+.
T Consensus       113 GCYtc~~ks~~~k  125 (251)
T PHA02982        113 GCFTCEAKDAEGK  125 (251)
T ss_pred             CceEEEEecCCCc
Confidence            9999999876544

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.31  E-value=0.6  Score=21.67  Aligned_cols=31  Identities=23%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             EEEccCCCCCCEEEEEEE-EcCCCceeEEEEE
Q psy9150          60 IEIDPATQMDAGIYECYA-DNMYNVDTRTFKT   90 (97)
Q Consensus        60 l~i~~~~~~~~g~y~c~~-~~~~g~~~~~~~~   90 (97)
                      .........|.|.+.|.+ .+..-.......+
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i   76 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEI   76 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence            444566678999999999 4444444444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03271 envelope glycoprotein C; Provisional

Probab=91.96  E-value=1.9  Score=26.63  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             EEEcCCeEEEEEEecccCCC---eeEEEeCCEEcccc
Q psy9150           8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTH   41 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~   41 (97)
                      .+..|+...-.|.+..+.+|   .+.|+++|......
T Consensus       256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~  292 (490)
T PHA03271        256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR  292 (490)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence            35678889999999776655   48999999877543

>PHA03270 envelope glycoprotein C; Provisional

Probab=91.84  E-value=2  Score=26.60  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             EEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccceeeEEEEEe-cCceEEEEEEEccCCCCC-CEEEEEEEE
Q psy9150           8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHMYVNLHEWHY-GTDRIKSKIEIDPATQMD-AGIYECYAD   78 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~-~g~y~c~~~   78 (97)
                      .+..|+...-.|.+..+.+|   .+.|++|+..+............. ......+++.+....... --..+|.+.
T Consensus       230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~  305 (466)
T PHA03270        230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFT  305 (466)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence            35678888899999776655   489999998875322222111111 122334455555443322 246788754

>PHA03269 envelope glycoprotein C; Provisional

Probab=91.78  E-value=2.2  Score=26.93  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=26.0

Q ss_pred             EEEcCCeEEEEEEecccCCC---eeEEEeCCEEccc
Q psy9150           8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYT   40 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~   40 (97)
                      -+..|+...-.|.+..+.+|   .+.|++|+..+..
T Consensus       338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~  373 (566)
T PHA03269        338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK  373 (566)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence            35678888999999776655   4899999888764

>PHA03273 envelope glycoprotein C; Provisional

Probab=90.73  E-value=2.8  Score=26.24  Aligned_cols=71  Identities=17%  Similarity=0.306  Sum_probs=41.4

Q ss_pred             EEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccceee--EEEEEecCceEEEEEEEccCCCCC-CEEEEEEEE
Q psy9150           8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHMYVN--LHEWHYGTDRIKSKIEIDPATQMD-AGIYECYAD   78 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~   78 (97)
                      .+..|+...-.|.+..+.+|   .+.|++++..+.......  ......+.....+++.+......+ --..+|.+.
T Consensus       246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~  322 (486)
T PHA03273        246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE  322 (486)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence            35678888999999776655   489999999887322211  111111111234556565544323 356788754

>PHA03376 BARF1; Provisional

Probab=84.02  E-value=1.3  Score=24.46  Aligned_cols=24  Identities=21%  Similarity=0.589  Sum_probs=19.6

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCC
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDG   35 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~   35 (97)
                      .+...+.|...|+|.|.+.|..+.
T Consensus       139 ~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        139 FSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             CCeeEEEEecCCcCCchheecccc
Confidence            455678899889999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-05
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		1e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		2e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		4e-04

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 2  HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
           +  D   V G    FIC A G PRP I W K G ++    +  + E+  G+  +   + 
Sbjct: 11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF-EVIEFDDGSGSV---LR 66
Query: 62 IDP-ATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
          I P  T  D  IYEC A N  NV   +  T  ++
Sbjct: 67 IQPLRTPRDEAIYECVASN--NVGEISVSTRLTV 98

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP- 64
          D   + G    F+C A G+P+P ITW K G ++ +  +  + E+  G   +   + I P 
Sbjct: 15 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRF-EVIEFDDGAGSV---LRIQPL 70
Query: 65 ATQMDAGIYECYADN 79
            Q D  IYEC A N
Sbjct: 71 RVQRDEAIYECTATN 85

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP- 64
          D   + G    F+C A G+P+P ITW K G ++ +  +  + E+  G   +   + I P 
Sbjct: 16 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRF-EVIEFDDGAGSV---LRIQPL 71
Query: 65 ATQMDAGIYECYADN 79
            Q D  IYEC A N
Sbjct: 72 RVQRDEAIYECTATN 86

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D E  +G  + + C+A GKPRP + W +DG  L +   + +     G +   SK+ ++  
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLE-- 356
Query: 66  TQMDAGIYECYADNMY 81
              D+G+Y+C A+N +
Sbjct: 357 ---DSGMYQCVAENKH 369

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 17  FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 75
            +C A G P P ITWFKD       + V+    +    +++S  ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKD------FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 76  YADNMYNV 83
            A N   V
Sbjct: 182 VATNSAGV 189

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 1  MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
          +    D   V G    F+C A G P+P +TW K G ++ +  +  + E+      +   +
Sbjct: 10 IKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---L 65
Query: 61 EIDP-ATQMDAGIYECYADN 79
           I P  T  D  IYEC A N
Sbjct: 66 RIQPLRTPRDENIYECVAQN 85

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 17  FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 75
            +C A G P P ITWFKD       + V+    +    +++S  ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKD------FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 76  YADNMYNV 83
            A N   V
Sbjct: 182 VATNSAGV 189

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 11  LGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEW---HYGTDRIKSKIEIDPAT 66
           +G++ V  C    G P    +WFKDG+ + T        +    +  D     +  DP T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 67  QMDAGIYECYADNMYNVDTRT 87
             D+G Y C A N Y    R+
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRS 198

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D E  +G  + + C A GKPRP + W ++G  L +   V +       D   SK+ ++  
Sbjct: 302 DTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEV----LAGDLRFSKLSLE-- 355
Query: 66  TQMDAGIYECYADNMY 81
              D+G+Y+C A+N +
Sbjct: 356 ---DSGMYQCVAENKH 368

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 11  LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVN--LHEWHYGTDRIKSKIEIDPATQ 67
           +G++ V  C  + G P    TWFKDG+ + T+           Y  +    ++  DP + 
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 68  MDAGIYECYADNMY 81
            D G Y C A N Y
Sbjct: 181 SDTGEYSCEARNGY 194

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D    +   + + C A G+P+P   W K+G  L T   + + +   GT      + I   
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---GT------LNITIV 354
Query: 66  TQMDAGIYECYADNMYNV 83
              DAG+Y+C A+N + V
Sbjct: 355 NLSDAGMYQCVAENKHGV 372

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D    +   + + C A G+P+P   W K+G  L T   + + +   GT      + I   
Sbjct: 303 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---GT------LNITIV 353
Query: 66  TQMDAGIYECYADNMYNV 83
              DAG+Y+C A+N + V
Sbjct: 354 NLSDAGMYQCVAENKHGV 371

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 18  ICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIEIDPATQMDAGIY 73
           +C A G P P ITWFKD + +         +      RIK      ++I+ + + D G Y
Sbjct: 129 LCAASGNPDPEITWFKDFLPV---------DPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 74  ECYADNMYNV 83
           EC A N   V
Sbjct: 180 ECVATNSAGV 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-20
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	8e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-16
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-14
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-10
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-16
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-15
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-12
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-15
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-08
2ens_A	96	Advanced glycosylation END product-specific recept	4e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-14
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-14
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-13
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-09
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-12
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-12
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-10
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-11
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-10
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-09
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-09
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-08
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	7e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	4e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	6e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	8e-04

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 77.1 bits (190), Expect = 2e-20
 Identities = 20/83 (24%), Positives = 29/83 (34%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             H        KG P+P + WF +G  L    Y+               +++D  T M+
Sbjct: 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMN 73

Query: 70 AGIYECYADNMYNVDTRTFKTDF 92
           G Y   A N Y  D +     F
Sbjct: 74 NGDYTLIAKNEYGKDEKQISAHF 96

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 71.5 bits (175), Expect = 7e-18
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 8  EYVLGHKIVFICMAKGKPRPHITWFKDGVELY--THMYVNLHEWHYGTDRIKSKIEIDPA 65
            V  H         G+P P + W  +G  L   + ++    E           + ++  
Sbjct: 11 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70

Query: 66 TQMDAGIYECYADNMYNVDTRTFKTDF 92
          T ++ G Y   A N +   + +    F
Sbjct: 71 THVNNGNYTLLAANPFGQASASIMAAF 97

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.8 bits (171), Expect = 3e-17
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           L  +     + +G P P + W  +G  L     +++   +   +  +  +  +  T  +
Sbjct: 18 ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYN 76

Query: 70 AGIYECYADNMYNVDTRTFKTDF 92
           G Y   A N      +T    F
Sbjct: 77 NGNYTLIAKNPLGTANQTINGHF 99

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 68.6 bits (168), Expect = 8e-17
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G ++  +   +GKPRP + W K G  L T         H  T    +   +  A + D+G
Sbjct: 39  GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV------HVRTSDFDTVFFVRQAARSDSG 92

Query: 72  IYECYADNMYNVDTRTFK 89
            YE         DT T +
Sbjct: 93  EYELSVQIENMKDTATIR 110

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 2e-16
 Identities = 18/82 (21%), Positives = 34/82 (41%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +     G  +   C+A G P P I+W  DG ++  +    + ++      + S + I   
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
              D G+Y+C A +   V   +
Sbjct: 498 HANDGGLYKCIAKSKVGVAEHS 519

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D  +  G      C A G P+P +TW K   +            +   +  +  + +D  
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE--EGTLHVDNI 780

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
            + + G Y C A N        
Sbjct: 781 QKTNEGYYLCEAINGIGSGLSA 802

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.5 bits (149), Expect = 7e-13
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
              +  +C A+G P P   W+K          V L++           + I  A   D+G
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVEDSG 319

Query: 72  IYECYADN 79
            Y C  +N
Sbjct: 320 KYLCVVNN 327

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 6   DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           +    +G  +   C   G   P +I W  DG  +   + +          R  S + I+ 
Sbjct: 628 EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR----VGRRGSVLTIEA 683

Query: 65  ATQMDAGIYECYADNMYNVDTRT 87
                AG + C+A N+      T
Sbjct: 684 VEASHAGNFTCHARNLAGHQQFT 706

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 15/76 (19%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                 G   VF C   G P   ++W KDG  +                  +S + I+  
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESV 396

Query: 66  TQMDAGIYECYADNMY 81
            + D G+Y+C+  N  
Sbjct: 397 KKEDKGMYQCFVRNDR 412

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 14/68 (20%), Positives = 19/68 (27%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
                  C A G P P I W +        +         G          D   ++ A 
Sbjct: 54  STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113

Query: 72  IYECYADN 79
           +Y C A N
Sbjct: 114 VYACLARN 121

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 56.5 bits (136), Expect = 4e-11
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 7/81 (8%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
               V G  ++  C   G P   I W +D   L  +    +     GT  I+     +  
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFP--NGTLIIE-----NVE 587

Query: 66  TQMDAGIYECYADNMYNVDTR 86
              D   Y C A N      R
Sbjct: 588 RNSDQATYTCVAKNQEGYSAR 608

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 7/83 (8%)

Query: 12  GHKIVFICMAK---GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
           G+  V  C+           ++W  D  E Y        ++         ++ I      
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 209

Query: 69  DA-GIYECYADNMYNVDTRTFKT 90
           D    Y+C   +    +TR   T
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSAT 232

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 68.6 bits (168), Expect = 4e-16
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           + G K V  C   G P+P ++W K    L  +  + + E   G+      + I    + D
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGS------LRIHNVQKED 164

Query: 70  AGIYECYADN 79
           AG Y C A N
Sbjct: 165 AGQYRCVAKN 174

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            + ++     F+C  +  P+P I+W ++ + +       L +  Y        + I   
Sbjct: 16 TVDALVEEVATFMCAVESYPQPEISWTRNKILI------KLFDTRYSIRENGQLLTILSV 69

Query: 66 TQMDAGIYECYADNMY 81
             D GIY C A+N  
Sbjct: 70 EDSDDGIYCCTANNGV 85

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 68.6 bits (168), Expect = 4e-16
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
               + G  +       GKP P ITW K    +  + +  +      T    S +  +  
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGV 168

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
            + DAG Y   A N + +D +T +
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVE 192

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          +           +C   G P+P + W++ G E+       L            ++ I   
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASV 69

Query: 66 TQMDAGIYECYADNMY 81
          T  DA +Y+  A N  
Sbjct: 70 TDDDATVYQVRATNQG 85

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 68.3 bits (167), Expect = 5e-16
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
          G  +   C  +G   P I W KDG  +     +Y+ + E H+        + +    + D
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI-----GFLSLKSVERSD 71

Query: 70 AGIYECYADN 79
          AG Y C  ++
Sbjct: 72 AGRYWCQVED 81

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 16/84 (19%)

Query: 6   DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           D            C A G P P  I W++   ++                   S   ++ 
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------------SPSVLNV 152

Query: 65  ATQMDAGIYECYADNMY-NVDTRT 87
                + ++ C A N+     +RT
Sbjct: 153 TGVTQSTMFSCEAHNLKGLASSRT 176

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 69.4 bits (170), Expect = 7e-16
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
             E + G  +   C  +G P   ++W KD  EL +     +       +   + I I   
Sbjct: 201 PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNV 255

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
              D G Y+C A N     T    
Sbjct: 256 DSADIGEYQCKASNDVGSYTCVGS 279

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 65.1 bits (159), Expect = 2e-14
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G    F C   G     ITW KD  E+          +        + + +   T+ DAG
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREI-----RPGGNYKMTLVENTATLTVLKVTKGDAG 74

Query: 72 IYECYADNMYNVDTRTFK 89
           Y CYA N+   D+ + +
Sbjct: 75 QYTCYASNVAGKDSCSAQ 92

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
                + C   G P   + W+KD  E+       +           + +E+   +  D+G
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS-----FVESVAVLEMYNLSVEDSG 168

Query: 72  IYECYADN 79
            Y C A N
Sbjct: 169 DYTCEAHN 176

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 68.1 bits (166), Expect = 9e-16
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 6   DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEI 62
                +G++ V  C    G P    TWFKDG+ + T            Y  +    ++  
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175

Query: 63  DPATQMDAGIYECYADNMY 81
           DP +  D G Y C A N Y
Sbjct: 176 DPLSASDTGEYSCEARNGY 194

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 63.8 bits (155), Expect = 4e-14
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPATQM 68
           + +   C   G   P + W  D  +    +  N        DR+    + I     T+ 
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 69 DAGIYECYADN 79
          D G Y C    
Sbjct: 79 DTGTYTCMVSE 89

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
              + G    F     G P P ++WF+DG  + T     L          ++K+ I   
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS---TLPGVQISFSDGRAKLTIPAV 70

Query: 66 TQMDAGIYECYADN 79
          T+ ++G Y   A N
Sbjct: 71 TKANSGRYSLKATN 84

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                 G ++       G P P + +++DG E+ + +   + +     +     + I  A
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ-----EGDLYSLLIAEA 166

Query: 66  TQMDAGIYECYADN 79
              D+G Y   A N
Sbjct: 167 YPEDSGTYSVNATN 180

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 65.0 bits (159), Expect = 1e-15
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D   + G   V  C  +G P P ITW  +G  +                    ++ I  A
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA--------ELHIQDA 71

Query: 66 TQMDAGIYECYADN 79
             D G Y C A+N
Sbjct: 72 LPEDHGTYTCLAEN 85

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 65.4 bits (160), Expect = 1e-15
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D +   G  +       G      TW K   ++    ++ +     G     SK+ I  A
Sbjct: 16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-----SKLTILAA 70

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
           Q   G Y    +N          
Sbjct: 71 RQEHCGCYTLLVENKLGSRQAQVN 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 65.1 bits (159), Expect = 1e-15
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVEL-YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
              +  C A G P P I+W K+G           + E   GT      ++I      D 
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE--QGT------LQIKNLRISDT 74

Query: 71 GIYECYADNMYNVDTRT 87
          G Y C A +     + +
Sbjct: 75 GTYTCVATSSSGETSWS 91

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.6 bits (160), Expect = 1e-15
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 15/74 (20%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK----IEIDPA 65
           +    V  C+A G P P I W KDGV + T              RIK      ++I  A
Sbjct: 21 AVDGTFVLSCVATGSPVPTILWRKDGVLVST-----------QDSRIKQLENGVLQIRYA 69

Query: 66 TQMDAGIYECYADN 79
             D G Y C A  
Sbjct: 70 KLGDTGRYTCIAST 83

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 64.8 bits (158), Expect = 2e-15
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +     + + F C A G P P + W K+G E      +  ++           + ++  
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESV 72

Query: 66 TQMDAGIYECYADNMY 81
             D G Y C  +N Y
Sbjct: 73 VPSDKGNYTCVVENEY 88

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 68.5 bits (167), Expect = 2e-15
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                  + + F C A G P P I+W K+G E      +   +  +        + ++  
Sbjct: 132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ----WSLVMESV 187

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
              D G Y C  +N +    +T+ 
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYT 211

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIE 61
           VLG  + F C      +PHI W K      +        ++ V        TD+    + 
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294

Query: 62  IDPATQMDAGIYECYADN 79
           +   T  DAG Y C A N
Sbjct: 295 LHNVTFEDAGEYTCLAGN 312

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 58.5 bits (141), Expect = 8e-12
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPATQ 67
          G  +   C    G P     W KDG  L              ++R+     ++++  A+ 
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVP------------SERVLVGPQRLQVLNASH 70

Query: 68 MDAGIYECYADNMY 81
           D+G Y C      
Sbjct: 71 EDSGAYSCRQRLTQ 84

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 66.9 bits (163), Expect = 2e-15
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 6   DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIE 61
                +G++ V  C    G P    +WFKDG+ + T             +  D     + 
Sbjct: 113 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172

Query: 62  IDPATQMDAGIYECYADNMYNVDTRT 87
            DP T  D+G Y C A N Y    R+
Sbjct: 173 FDPVTAFDSGEYYCQAQNGYGTAMRS 198

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 60.8 bits (147), Expect = 6e-13
 Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 3/77 (3%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEI 62
          D +      I   C   G   P + W          +  N        DR+    S I  
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITF 69

Query: 63 DPATQMDAGIYECYADN 79
             T+ D G Y C    
Sbjct: 70 SSVTRKDNGEYTCMVSE 86

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            +     + + F C A G P P + W K+G E      +  ++       +     ++  
Sbjct: 28  LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESV 83

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
              D G Y C  +N Y     T+ 
Sbjct: 84  VPSDKGNYTCVVENEYGSINHTYH 107

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 62.6 bits (152), Expect = 1e-13
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHM------YVNLHEWHYGTDRIKSKIEID 63
           V+G  + F+C      +PHI W K   +  +        Y+ + +           + + 
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190

Query: 64  PATQMDAGIYECYADN 79
             T+ DAG Y C   N
Sbjct: 191 NVTEADAGEYICKVSN 206

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          +     G          G P P ++W+ +G  + +     +     G       +  +  
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL----HSLIFEVV 69

Query: 66 TQMDAGIYECYADN 79
             DAG Y C A N
Sbjct: 70 RASDAGAYACVAKN 83

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G    F C   G+P P +TW + G  L T     +        + KS  EI      D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEG 83

Query: 72 IYECYADN 79
           Y    +N
Sbjct: 84 NYSVVVEN 91

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 66.3 bits (162), Expect = 3e-15
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D    LG      C   G+P P I W++ G EL       +       D     + +   
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTE 70

Query: 66 TQMDAGIYECYADN 79
           Q D G+Y C A N
Sbjct: 71 EQEDEGVYTCIATN 84

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 62.8 bits (153), Expect = 7e-14
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            Y   +G  +    M  G+P P +TWF     L     + +      T+     +  +  
Sbjct: 112 KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN----TEHYTHLVMKNVQ 167

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
            +  AG Y+    N++        
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILD 191

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 63.8 bits (156), Expect = 4e-15
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D          F   A G+PRP   W KDG  +       L E     D+    +EI   
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKT 69

Query: 66 TQMDAGIYECYADN 79
             D+G+Y C   N
Sbjct: 70 DTSDSGLYTCTVKN 83

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 68.0 bits (166), Expect = 4e-15
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             G   +  CM    P  +  +FK+G ++  +    +   +  + +    +        D
Sbjct: 225 KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR---LLFKTTLPED 281

Query: 70  AGIYECYADN 79
            G+Y C  DN
Sbjct: 282 EGVYTCEVDN 291

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 61.9 bits (150), Expect = 6e-13
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 6  DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
          +  +   +  V  C+ +G  +    +W KDG       +        G+      +    
Sbjct: 15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS------LVFLR 68

Query: 65 ATQMDAGIYECYADNMY 81
              D G Y+C+A+   
Sbjct: 69 PQASDEGHYQCFAETPA 85

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 10/68 (14%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G  +   C   G P P++ W  +   L                   S + I      D G
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD----------SGLVIKGVKNGDKG 373

Query: 72  IYECYADN 79
            Y C A N
Sbjct: 374 YYGCRATN 381

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 9/84 (10%)

Query: 10  VLGHKIVFICM-AKGKPRPHITWFKDGVELYTHMYVNLHEWHY-----GTDRIKSKIEID 63
           + G      C+     P+P ITW K       +  V   +        G         + 
Sbjct: 113 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI---VT 169

Query: 64  PATQMDAGIYECYADNMYNVDTRT 87
                D   Y C A N    +   
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVV 193

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 63.6 bits (155), Expect = 4e-15
 Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 14/74 (18%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                G  +   C    +P P I W KDGV L       L               +   
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLI--------------LPEI 64

Query: 66 TQMDAGIYECYADN 79
             D G Y C A +
Sbjct: 65 GPQDQGTYSCVATH 78

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 67.9 bits (166), Expect = 5e-15
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 5   FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
              E + G  +   C  +G P   ++W KD  EL +     +       +   + I I  
Sbjct: 392 HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILN 446

Query: 65  ATQMDAGIYECYADNMYNVDTRTF 88
               D G Y+C A N    DT   
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVG 470

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 67.5 bits (165), Expect = 5e-15
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
             +  LG    F C   G     ITW KD  E+       +           + + +   
Sbjct: 206 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT-----ATLTVLKV 260

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
           T+ DAG Y CYA N+   D+ + +
Sbjct: 261 TKGDAGQYTCYASNVAGKDSCSAQ 284

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            E  +G  I   C   G P   I W+K+  +L +        +        + + I+  
Sbjct: 14 HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP-----AYKMQFKNNVASLVINKV 68

Query: 66 TQMDAGIYECYADNMYNVDTRT 87
             D G Y C A+N       +
Sbjct: 69 DHSDVGEYTCKAENSVGAVASS 90

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D   V+G ++      +G     + WFKD  E+                   + ++   A
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVR----ESDNIWISYSENIATLQFSRA 541

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
              +AG Y C   N          
Sbjct: 542 EPANAGKYTCQIKNEAGTQECFAT 565

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
                + C   G P   + W+KD  E+         ++        + +E+   +  D+G
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQES-----SKFRMSFVESVAVLEMYNLSVEDSG 360

Query: 72  IYECYADN 79
            Y C A N
Sbjct: 361 DYTCEAHN 368

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G  + F C   G     ++W+KDG  L     +     H       + ++I    Q   G
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV-----ATLQILQTDQSHVG 170

Query: 72  IYECYADNMYNVDTRTFK 89
            Y C A N     + + K
Sbjct: 171 QYNCSASNPLGTASSSAK 188

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.1 bits (156), Expect = 5e-15
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY---GTDRIKSKIEI 62
          D     G      C A+G+P P I W+K G  + T              G+     +I  
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF-LRIVH 76

Query: 63 DPATQMDAGIYECYADN 79
             ++ D G+Y C A N
Sbjct: 77 GRKSRPDEGVYVCVARN 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 63.6 bits (155), Expect = 5e-15
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 16/81 (19%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPATQM 68
          G  +   C  +      I W +DGV+L              ++R +    ++E+  +   
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAE------------SNRTRITGEEVEVQDSVPA 64

Query: 69 DAGIYECYADNMYNVDTRTFK 89
          D+G+Y C   +    DT  F 
Sbjct: 65 DSGLYACVTSSPSGSDTTYFS 85

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 63.5 bits (155), Expect = 6e-15
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D     G      C   G P P ++W  DG  +       +     G       + I+P 
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV----HSLIIEPV 73

Query: 66 TQMDAGIYECYADN 79
          T  DAGIY C A N
Sbjct: 74 TSRDAGIYTCIATN 87

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 65.7 bits (160), Expect = 6e-15
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G  +   C   G P P ++W K+   L    + NL      T    +   I+  +  D+G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT----AYFTINGVSTADSG 187

Query: 72  IYECYADNMYNVDTRTFK 89
            Y     N Y  +T  F 
Sbjct: 188 KYGLVVKNKYGSETSDFT 205

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 52.9 bits (127), Expect = 4e-10
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 6/79 (7%)

Query: 12 GHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
             I     +        + W  +G  +     V       G    +  ++I+  T  D 
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV-----KTGVTGEQIWLQINEPTPNDK 71

Query: 71 GIYECYADNMYNVDTRTFK 89
          G Y     +      +T  
Sbjct: 72 GKYVMELFDGKTGHQKTVD 90

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 63.1 bits (154), Expect = 6e-15
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 14/74 (18%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            + + G  +V  C+A G P PH  WFK+ + L              T   K    +   
Sbjct: 12 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL--------------THETKKLYMVPYV 57

Query: 66 TQMDAGIYECYADN 79
               G Y C+  N
Sbjct: 58 DLEHQGTYWCHVYN 71

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 66.9 bits (163), Expect = 7e-15
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G  +   C   G P P ++W K+   L +  + NL      T    +   I+  +  D+G
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRT----AYFTINGVSTADSG 292

Query: 72  IYECYADNMYNVDTRTFK 89
            Y     N Y  +T  F 
Sbjct: 293 KYGLVVKNKYGSETSDFT 310

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.5 bits (136), Expect = 4e-11
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 18/92 (19%)

Query: 4  HFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----- 57
          +  +E      ++  C     K   HI W+KD  E+               ++       
Sbjct: 13 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV------------DEKHDFKDGI 60

Query: 58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
            + I   ++ DAGIYE    +    D    K
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 16  VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
           ++  +        + W  +G  +     V       G    +  ++I+  T  D G Y  
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRV-----KTGVTGEQIWLQINEPTPNDKGKYVM 181

Query: 76  YADNMYNVDTRTFK 89
              +      +T  
Sbjct: 182 ELFDGKTGHQKTVD 195

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 63.1 bits (154), Expect = 7e-15
 Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 5/84 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            +   G          G P P  TW            + +           + I    A
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSSTTSIFFPSA 65

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
           + D+G Y+    N    D   F+
Sbjct: 66 KRADSGNYKLKVKNELGEDEAIFE 89

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.1 bits (163), Expect = 8e-15
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +    +G  I   C A G P P I WFKD   L     + L + +         + I   
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN-------RNLTIRRV 727

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
            + D G+Y C A ++         
Sbjct: 728 RKEDEGLYTCQACSVLGCAKVEAF 751

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 65.2 bits (158), Expect = 4e-14
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
             E  +G ++       G P P I W+K+G+ L ++  +          +    + I   
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI----------KAGHVLTIMEV 388

Query: 66  TQMDAGIYECYADNMYNVDTRTF 88
           ++ D G Y     N  + + ++ 
Sbjct: 389 SERDTGNYTVILTNPISKEKQSH 411

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.4 bits (143), Expect = 5e-12
 Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 15/104 (14%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL---------------YTHMYVNLHEWH 50
           D +      +   C A      ++TW+K G +                   ++       
Sbjct: 558 DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF 617

Query: 51  YGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
             +      +E+  A+  D G Y C A +             ++
Sbjct: 618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV 661

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 12  GHKIVFICMAKGKPRPHI--TWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPAT 66
           G K+V  C A+ +    I   W     +      VN          +K   S + ID  T
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298

Query: 67  QMDAGIYECYADNMYNVDTRTFK 89
           + D G+Y C A +       +  
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTF 321

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 29/111 (26%)

Query: 8   EYVLGHKIVFICMAKGKPRP-HITWFKDGVEL--------------YTHMYVNLHEWHYG 52
            Y  G      C     P P HI W+    E               Y        E   G
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493

Query: 53  TDRI--------------KSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
            ++I              K+   +       + +Y+C A N      R   
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 6/68 (8%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
              +   C  +G+      W  +       + V               + I      D G
Sbjct: 46  NTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECS----DGLFCKTLTIPKVIGNDTG 99

Query: 72  IYECYADN 79
            Y+C+   
Sbjct: 100 AYKCFYRE 107

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 8/79 (10%), Positives = 16/79 (20%), Gaps = 10/79 (12%)

Query: 12  GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
              +V  C+             + +   +     ++           K    I       
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS--------KKGFTIPSYMISY 194

Query: 70  AGIYECYADNMYNVDTRTF 88
           AG+  C A           
Sbjct: 195 AGMVFCEAKINDESYQSIM 213

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 66.8 bits (163), Expect = 9e-15
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +        I F C   GKP P + W K+G  +    Y  +           S + I   
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGV 372

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
            + D G Y+C A+N       +
Sbjct: 373 VKSDEGFYQCVAENEAGNAQSS 394

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 64.9 bits (158), Expect = 5e-14
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 6   DYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           D   + G  ++  C A+  +  P I W KDG+ L   M     +   G+  I   I    
Sbjct: 30  DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI-QNILHSR 88

Query: 65  ATQMDAGIYECYADN 79
             + D G+Y+C A  
Sbjct: 89  HHKPDEGLYQCEASL 103

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 64.9 bits (158), Expect = 5e-14
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +   + G   V  C   G P P  TW +    +       L    Y      + + I   
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI------QLRSKKYSLLGGSN-LLISNV 282

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
           T  D+G Y C         + +
Sbjct: 283 TDDDSGTYTCVVTYKNENISAS 304

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 61.4 bits (149), Expect = 7e-13
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIE 61
                +G  ++  C   G P P I W K+  +L             G  R+       ++
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP---------GDSRVVVLPSGALQ 180

Query: 62  IDPATQMDAGIYECYADNM 80
           I      D+G+Y C A N 
Sbjct: 181 ISRLQPGDSGVYRCSARNP 199

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                  + + F C A G P P I+W K+G E      +   +  +     +  + ++  
Sbjct: 24  LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ----QWSLVMESV 79

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
              D G Y C  +N +    +T+ 
Sbjct: 80  VPSDRGNYTCVVENKFGSIRQTYT 103

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVN-------LHEWHYGTDRIKSKIEI 62
           VLG  + F C      +PHI W K      + +  +       L  W   +     ++ +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186

Query: 63  DPATQMDAGIYECYADN 79
              ++ D G Y C A N
Sbjct: 187 ANVSERDGGEYLCRATN 203

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
             G ++ F C A G P P I+WF++G  +  +    L           +++ +      D
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSD 163

Query: 70  AGIYECYADN 79
            G Y C A N
Sbjct: 164 GGPYVCRATN 173

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 64.0 bits (156), Expect = 2e-14
 Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 6/76 (7%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            E+  G     +C     P P ++W     E+ T                   ++I   
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN------LQILNI 64

Query: 66 TQMDAGIYECYADNMY 81
           + D GIY C      
Sbjct: 65 NKSDEGIYRCEGRVEA 80

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 13/80 (16%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIE 61
                       +C A G P P ITWFKD + +         +      RIK      ++
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPV---------DPSASNGRIKQLRSGALQ 167

Query: 62  IDPATQMDAGIYECYADNMY 81
           I+ + + D G YEC A N  
Sbjct: 168 IESSEETDQGKYECVATNSA 187

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            +E + G  +   C+A G P P++ W +   +L     +       G + ++        
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM-----PVGRNVLEL------T 262

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
              D+  Y C A +   V    
Sbjct: 263 DVKDSANYTCVAMSSLGVIEAV 284

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEID 63
          D   V G    F+C A G P+P +TW K G ++ +     +   E      RI+      
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL---- 70

Query: 64 PATQMDAGIYECYADN 79
            T  D  +YEC A N
Sbjct: 71 -RTPRDENVYECVAQN 85

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                       +C A G P P ITWFKD + + T    N              ++I+ +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS--NNNGRIKQLRSESIGALQIEQS 174

Query: 66  TQMDAGIYECYADNM 80
            + D G YEC A N 
Sbjct: 175 EESDQGKYECVATNS 189

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 60.2 bits (146), Expect = 7e-13
 Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEID 63
          D   V G    FIC A G PRP I W K G ++       +   +      RI       
Sbjct: 15 DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI-----QP 69

Query: 64 PATQMDAGIYECYADN 79
            T  D  IYEC A N
Sbjct: 70 LRTPRDEAIYECVASN 85

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 63.2 bits (154), Expect = 1e-14
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-----YTHMYVNLHEWHYGTDRIKSKI 60
            + + G  +   C     P P + W ++   +        +Y +              +
Sbjct: 24 SKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV--------TL 75

Query: 61 EIDPATQMDAGIYECYADN 79
           I    + DAG Y   A N
Sbjct: 76 LIKDVNKKDAGWYTVSAVN 94

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 64.9 bits (158), Expect = 2e-14
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 14/72 (19%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           + G  +V  C+A G P PH  WFK+ + L              T   K    +       
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPL--------------THETKKLYMVPYVDLEH 176

Query: 70  AGIYECYADNMY 81
            G Y C+  N  
Sbjct: 177 QGTYWCHVYNDR 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 62.6 bits (152), Expect = 1e-13
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 14/68 (20%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  +   C A G P     WFK   E+             G     S++  +     DAG
Sbjct: 33 GQFVKLCCRATGHPFVQYQWFKMNKEI-----------PNGNT---SELIFNAVHVKDAG 78

Query: 72 IYECYADN 79
           Y C  +N
Sbjct: 79 FYVCRVNN 86

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 61.9 bits (151), Expect = 2e-14
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D     G  ++     +G+P+P ++W ++   +         E   G      ++ I  A
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL----CRLRILAA 69

Query: 66 TQMDAGIYECYADN 79
           + DAG Y C A N
Sbjct: 70 ERGDAGFYTCKAVN 83

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 61.7 bits (150), Expect = 2e-14
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 16/86 (18%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEI 62
                G  +   C  +      I W +DGV+L              ++R +    ++E+
Sbjct: 18 SLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE------------SNRTRITGEEVEV 64

Query: 63 DPATQMDAGIYECYADNMYNVDTRTF 88
            +   D+G+Y C   +    DT  F
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYF 90

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 64.5 bits (157), Expect = 2e-14
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                 G+++   C     P   I+WF+DG  L +  Y N+  ++  +    S +E+ P 
Sbjct: 27  AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA---SYLEVTPD 83

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
           ++ D G Y C A N    ++  F 
Sbjct: 84  SENDFGNYNCTAVNRIGQESLEFI 107

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            Y    G+ I   C  K  P   I W +D + L      NL  +  G    K  +EI P 
Sbjct: 109 IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR---KMILEIAPT 165

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
           +  D G Y C A N      + + 
Sbjct: 166 SDNDFGRYNCTATNHIGTRFQEYI 189

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 64.8 bits (158), Expect = 5e-14
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYG--TDRIKSKIEIDPATQ 67
              ++  +C A+G+P P ITW +              +           S + I     
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72

Query: 68 MDAGIYECYADNMYNVDTRT 87
           D+G Y+C A +      ++
Sbjct: 73 SDSGRYDCEAASRIGGHQKS 92

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +     G ++ F C A G P P I+WF++G  +  +    L           +++ +   
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNI 255

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
              D G Y C A N    D +   
Sbjct: 256 INSDGGPYVCRATNKAGEDEKQAF 279

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIE 61
             E+  G     +C     P P ++W     E+ T             +R      + ++
Sbjct: 107 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----------SDNRFAMLANNNLQ 156

Query: 62  IDPATQMDAGIYECYADNMY 81
           I    + D GIY C      
Sbjct: 157 ILNINKSDEGIYRCEGRVEA 176

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G    F C A G+P     +   G ++ +   V + +     + ++S++ I  A   DAG
Sbjct: 19 GESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAG 73

Query: 72 IYECYADNM 80
          IY C A + 
Sbjct: 74 IYRCQATDA 82

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY-----GTDRIKSKI 60
          D     G      C A+G+P P I W+K G  +      +    H      G+     +I
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV--ETDKDDPRSHRMLLPSGSLFF-LRI 74

Query: 61 EIDPATQMDAGIYECYADNMY 81
               ++ D G+Y C A N  
Sbjct: 75 VHGRKSRPDEGVYVCVARNYL 95

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 60.2 bits (146), Expect = 7e-13
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 10  VLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
            +G   V  C   +G P P I+W KDG  L                    K+ I    + 
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR--------GGKLMITYTRKS 175

Query: 69  DAGIYECYADNMY 81
           DAG Y C   NM 
Sbjct: 176 DAGKYVCVGTNMV 188

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 63.8 bits (155), Expect = 3e-14
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D   ++G  +   C A G P P I W K    + +   ++            + ++I   
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG---------AVLKIFNI 172

Query: 66  TQMDAGIYECYADN 79
              D GIYEC A+N
Sbjct: 173 QLEDEGIYECEAEN 186

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 12 GHKIVFICMA-KGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
          G  +V +C      P      W  +   ++    + + +  + +      + I      D
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVF----ITMDKRRFVSQT-NGNLYIANVEASD 77

Query: 70 AGIYECYADNMY 81
           G Y C+  +  
Sbjct: 78 KGNYSCFVSSPS 89

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 61.6 bits (150), Expect = 4e-14
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           Y+   G  + F C   G P+P I WFKDG ++      + +      D   S +    +
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS--DHYTIQRDLDGTCS-LHTTAS 73

Query: 66 TQMDAGIYECYADN 79
          T  D G Y   A N
Sbjct: 74 TLDDDGNYTIMAAN 87

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 63.7 bits (155), Expect = 4e-14
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
            +GH ++  C A G P P+I W K+  ++        +    G       ++I+ + + D
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR--YSLKDGF------LQIENSREED 174

Query: 70  AGIYECYADNM 80
            G YEC A+N 
Sbjct: 175 QGKYECVAENS 185

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEI 62
          +    +G    F C A+G P P I W K+G ++        V       G   I   + I
Sbjct: 15 NQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP---GGISI---LRI 68

Query: 63 DPATQM-DAGIYECYADN 79
          +P     D   YEC A+N
Sbjct: 69 EPVRAGRDDAPYECVAEN 86

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.7 bits (155), Expect = 5e-14
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D            C  +GKP P I WFKDG  + T+     H   +    +     +   
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE-KKSHRVQFKDGALFFYRTMQGK 76

Query: 66 TQMDAGIYECYADN 79
           + D G Y C A N
Sbjct: 77 KEQDGGEYWCVAKN 90

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.0 bits (153), Expect = 9e-14
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 6   DYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           D     G   +  C   KG P P + W KDGV L     ++              + I  
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN 176

Query: 65  ATQMDAGIYECYADNMY 81
              +D G Y+C A N+ 
Sbjct: 177 VEPIDEGNYKCIAQNLV 193

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 64.1 bits (156), Expect = 6e-14
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
            LG  +  +C A G P P ++W KDG  +      +            S++ I    + D
Sbjct: 209 NLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKND 265

Query: 70  AGIYECYADNMYNVDTRTFK 89
              Y C A+N       +  
Sbjct: 266 EAEYVCIAENKAGEQDASIH 285

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
             E+  G   V +C       P I W   G ++     V               ++I   
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGI 162

Query: 66  TQMDAGIYECYADNM 80
            + D G Y C    +
Sbjct: 163 KKTDEGTYRCEGRIL 177

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 10 VLGHKIVFICMAKGKPR-PHITWFK-DGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPA 65
           +G    F+C   G  +   I+WF  +G +L  +      +           S + I  A
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNA 69

Query: 66 TQMDAGIYECYADNMY 81
             DAGIY+C      
Sbjct: 70 NIDDAGIYKCVVTAED 85

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 62.0 bits (150), Expect = 6e-14
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI----- 60
             +  +G  +   C A G P P I W+ +G                    I +       
Sbjct: 30  SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89

Query: 61  ---EIDPATQMDAGIYECYADN 79
               ID   + D G YEC A N
Sbjct: 90  STISIDTLVEEDTGTYECRASN 111

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 64.6 bits (157), Expect = 6e-14
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           ++ H I  +C A+G P P   W+K          V L++           + I  A   D
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVED 281

Query: 70  AGIYECYADN 79
           +G Y C  +N
Sbjct: 282 SGKYLCVVNN 291

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                 G   VF C   G P   ++W KDG  +                  +S + I+  
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESV 360

Query: 66  TQMDAGIYECYADN 79
            + D G+Y+C+  N
Sbjct: 361 KKEDKGMYQCFVRN 374

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 14/70 (20%), Positives = 20/70 (28%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
                 C A G P P I W +        +         G          D   ++ A 
Sbjct: 19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78

Query: 72 IYECYADNMY 81
          +Y C A N +
Sbjct: 79 VYACLARNQF 88

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 10  VLGHKIVFICMAK---GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
           + G+  V  C+           ++W  D  E Y        ++         ++ I    
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVG 172

Query: 67  QMDA-GIYECYADNMYNVDTRT 87
             D    Y+C   +    +TR 
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRL 194

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 64.1 bits (156), Expect = 8e-14
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 15/77 (19%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEI 62
           D    +   + + C A G+P+P   W K+G  L T             DRI+     + I
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT------------RDRIQIEQGTLNI 351

Query: 63  DPATQMDAGIYECYADN 79
                 DAG+Y+C A+N
Sbjct: 352 TIVNLSDAGMYQCVAEN 368

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
            K+   C  KG P+PHI W  +G ++        ++ +   G+  I      +P    D
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD---GSLLI-----NNPNKTQD 74

Query: 70 AGIYECYADNMY 81
          AG Y+C A N +
Sbjct: 75 AGTYQCIATNSF 86

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
             G  +   C A G P P I W + DG  +      +      G       +EI    Q 
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN---GI------LEIPNFQQE 268

Query: 69  DAGIYECYADN 79
           DAG YEC A+N
Sbjct: 269 DAGSYECVAEN 279

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 16/81 (19%)

Query: 12  GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIEIDPAT 66
           G  +V +C            W  +    Y               R  S     + I    
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-----------DNRRFVSQETGNLYIAKVE 165

Query: 67  QMDAGIYECYADNMYNVDTRT 87
           + D G Y C   N        
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVL 186

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
               + G  +       GKP P ITW K    +  + +  +      T    S +  +  
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGV 168

Query: 66  TQMDAGIYECYADNMYNVDTRTFK 89
            + DAG Y   A N + +D +T +
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVE 192

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQM 68
                  +C   G P+P + W++ G E+    +   + E+  G      ++ I   T  
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDD 72

Query: 69 DAGIYECYADN 79
          DA +Y+  A N
Sbjct: 73 DATVYQVRATN 83

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D E  +G  + + C+A GKPRP + W +DG  L +   + +            ++     
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG---------GELRFSKL 353

Query: 66  TQMDAGIYECYADN 79
              D+G+Y+C A+N
Sbjct: 354 VLEDSGMYQCVAEN 367

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           + G  +   C A G P P I W K      +                   + I      D
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS-----SEPL------LHIQNVDFED 268

Query: 70  AGIYECYADN 79
            G YEC A+N
Sbjct: 269 EGTYECEAEN 278

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
            K+   C A+  P     W  +G EL      + +    G   I      +P    DAG
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPD-SRYRLVAGDLVI-----SNPVKAKDAG 75

Query: 72 IYECYADNMY 81
           Y+C A N  
Sbjct: 76 SYQCVATNAR 85

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 14/87 (16%)

Query: 12  GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE----IDPAT 66
           G  ++F C      P     W  +    +               R  S+      I    
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA---------DGRRFVSQTTGNLYIAKTE 166

Query: 67  QMDAGIYECYADNMYNVDTRTFKTDFS 93
             D G Y C+A +  +  T++  + FS
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFS 193

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 60.0 bits (146), Expect = 1e-13
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 17/79 (21%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-----SKI 60
          +    +G  I   C A G P P I WFKD   L                 I        +
Sbjct: 19 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE------------DSGIVLKDGNRNL 66

Query: 61 EIDPATQMDAGIYECYADN 79
           I    + D G+Y C A +
Sbjct: 67 TIRRVRKEDEGLYTCQACS 85

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 63.6 bits (154), Expect = 2e-13
 Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 9/83 (10%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           DYE     +  F    K  P+   TW               +            I     
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN---------GYSISKFCN 385

Query: 66  TQMDAGIYECYADNMYNVDTRTF 88
            +   G Y  +A+N     T+ F
Sbjct: 386 HKHQPGEYIFHAENDDAQFTKMF 408

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 6/87 (6%)

Query: 2   HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
           +     E  +   I    +          W      L    + +L      +  I     
Sbjct: 53  YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK--- 109

Query: 62  IDPATQMDAGIYECYADNMYNVDTRTF 88
               T+  AG Y  +  +     T  F
Sbjct: 110 ---MTETQAGEYLLFIQSEATNYTILF 133

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 55.9 bits (134), Expect = 8e-11
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 2/76 (2%)

Query: 6   DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYG-TDRIKSKIEID 63
                +G  +   C A        +TW  +   L    Y  +  +    T        + 
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 64  PATQMDAGIYECYADN 79
              + D G Y C +  
Sbjct: 296 SVARNDTGYYTCSSSK 311

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 53.2 bits (127), Expect = 7e-10
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 9   YVLGHKIVFICMAKGKPRPHITWFKDG------VELYTHMYVNLHEWHYGTDRIKSKIEI 62
                     C + G P P  TW K         E  T    N         +  S   +
Sbjct: 419 LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478

Query: 63  DPATQMDAGIYECYADNMYNVDTRTFK 89
           + +  +   + +C A N       T  
Sbjct: 479 NMSEAIKGFLVKCCAYNSLGTSCETIL 505

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 45.1 bits (106), Expect = 5e-07
 Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 9/74 (12%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            Y   + ++   +C+++  P P + W     +  +    +          +         
Sbjct: 148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH-------- 199

Query: 66  TQMDAGIYECYADN 79
            ++      C A N
Sbjct: 200 -ELFGTDIRCCARN 212

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 60.6 bits (147), Expect = 2e-13
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D E V G    F C  +G P P + WFKD   +    +  +     G       + I   
Sbjct: 50  DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN----CSLTISEV 105

Query: 66  TQMDAGIYECYADN 79
              D   Y C A N
Sbjct: 106 CGDDDAKYTCKAVN 119

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +     G     +C A G P+P + W  +G  L +       E    T      I     
Sbjct: 321 NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT------IIFRDT 374

Query: 66  TQMDAGIYECYADN 79
                 +Y+C   N
Sbjct: 375 QISSRAVYQCNTSN 388

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D+       I+  C AKG P P   W ++           +         +         
Sbjct: 26  DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT-LVIDFRSGGR 84

Query: 66  TQMDAGIYECYADNMY 81
            +   G Y+C+A N +
Sbjct: 85  PEEYEGEYQCFARNKF 100

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           + G  ++  C+A G P P I W+K G +L +             +     + I   ++ D
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSD--------KAKFENFNKALRITNVSEED 286

Query: 70  AGIYECYADNMYNVDTRTFK 89
           +G Y C A N       T  
Sbjct: 287 SGEYFCLASNKMGSIRHTIS 306

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 17/82 (20%)

Query: 12  GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIEIDPAT 66
           G  +   C    G P P I W    +E  T              R+       +      
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-----------QDKRVSQGHNGDLYFSNVM 179

Query: 67  QMDA-GIYECYADNMYNVDTRT 87
             D    Y C A   +    + 
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQ 201

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 62.0 bits (150), Expect = 5e-13
 Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 1/85 (1%)

Query: 6   DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
                 G  +  I   +  P+P H  W                  +    R  S++ +  
Sbjct: 322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR 381

Query: 65  ATQMDAGIYECYADNMYNVDTRTFK 89
               + G Y     N        F 
Sbjct: 382 LKGTEGGTYTFLVSNSDVNAAIAFN 406

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 61.6 bits (149), Expect = 7e-13
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 8   EYVLGHKIVFICMAKGKPRPHITWFK-------DGVELYTHMYVNLHEWHYGTDRIKSKI 60
            Y      +  C+A G P P I W+            +       L+       ++  + 
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFK 89
            ID +     G  EC A N     +  F 
Sbjct: 477 SIDSSAFKHNGTVECKAYNDVGKTSAYFN 505

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
             S   Y    G +    C  K      + TW ++  +       N           ++ 
Sbjct: 215 SVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274

Query: 60  IEIDPATQMDAGIYECYADNMYNVDTRT 87
           + I  A   D+G++ CYA+N +     T
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVT 302

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 17/85 (20%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G +I  +C   G     + W  + ++                   +++   + A   + G
Sbjct: 51  GDEIRLLCTDPG----FVKWTFEILDETNENK-------------QNEWITEKAEATNTG 93

Query: 72  IYECYADNMYNVDTRTFKTDFSITF 96
            Y C   +  +     F  D +  F
Sbjct: 94  KYTCTNKHGLSNSIYVFVRDPAKLF 118

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 61.3 bits (148), Expect = 6e-13
 Identities = 15/89 (16%), Positives = 25/89 (28%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                 G  I  +C+  G    +  W     E    +             I+S + I  A
Sbjct: 190 QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA 249

Query: 66  TQMDAGIYECYADNMYNVDTRTFKTDFSI 94
              D+G Y C      N        + ++
Sbjct: 250 ELEDSGTYTCNVTESVNDHQDEKAINITV 278

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 42.4 bits (99), Expect = 4e-06
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 10/79 (12%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
              V  C         + W +   E    M               S + +   T +D G
Sbjct: 15 SSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQD------GTFSSVLTLTNLTGLDTG 64

Query: 72 IYECYADNMYNVDTRTFKT 90
           Y C  ++   ++T   K 
Sbjct: 65 EYFCTHNDSRGLETDERKR 83

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 7e-13
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--S 58
             S   +  V  H         G+P P + W  +G  L    ++         +      
Sbjct: 250 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 309

Query: 59  KIEIDPATQMDAGIYECYADNMYNVDTRTF 88
            + ++  T ++ G Y   A N +   + + 
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFGQASASI 339

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
                +    +G  ++  C  +G+      W    +E    +             +    
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTL---- 216

Query: 61  EIDPATQMDAGIYECYADNM 80
             +  + ++     C+A+N 
Sbjct: 217 -ANVTSDLNRKNVTCWAEND 235

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 59.8 bits (145), Expect = 8e-13
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 14/78 (17%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK----IE 61
             E+  G   V +C       P I W   G ++                R        ++
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK----------KDVRFIVLSNNYLQ 158

Query: 62  IDPATQMDAGIYECYADN 79
           I    + D G Y C    
Sbjct: 159 IRGIKKTDEGTYRCEGRI 176

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 58.3 bits (141), Expect = 3e-12
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 6  DYEYVLGHKIVFICMAKGKPR-PHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
            E  +G    F+C   G  +   I+WF  +G +L  +            D   S + I 
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIY 67

Query: 64 PATQMDAGIYECYADNMY 81
           A   DAGIY+C      
Sbjct: 68 NANIDDAGIYKCVVTAED 85

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 59.5 bits (144), Expect = 1e-12
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI-DP 64
                 G   +  C + G P P   W K    ++  +  +   +        +++ I + 
Sbjct: 101 SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNL 160

Query: 65  ATQMDAGIYECYADN 79
               D G YEC A N
Sbjct: 161 QITEDPGEYECNATN 175

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 12/84 (14%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHIT--WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
                   +   C         +   W K+GVEL               +    +  I+
Sbjct: 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT----------RKNASNMEYRIN 61

Query: 64 PATQMDAGIYECYADNMYNVDTRT 87
               D+G Y C    +       
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKANA 85

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 56.9 bits (138), Expect = 2e-12
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEID 63
                G    F     GKP P   W+K+GV++     +Y    E +         + I 
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE------LVIR 67

Query: 64 PATQMDAGIYECYADN 79
            T  D+      A N
Sbjct: 68 DVTGEDSASIMVKAIN 83

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
            +S  DYE     +  F    K  P+   TW                E     +     I
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-------PCEQKGLDNG--YSI 380

Query: 61  EIDPATQMDAGIYECYADNMYNVDTRTFK 89
                 +   G Y  +A+N     T+ F 
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFT 409

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 58.9 bits (142), Expect = 5e-12
 Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 2/83 (2%)

Query: 6   DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-SKIEID 63
                +G  +   C A        +TW  +   L    Y  +  +      I+     + 
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 64  PATQMDAGIYECYADNMYNVDTR 86
              + D G Y C +    +    
Sbjct: 296 SVARNDTGYYTCSSSKHPSQSAL 318

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 56.6 bits (136), Expect = 4e-11
 Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 6/88 (6%)

Query: 2   HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
           +     E  +   I    +          W      L      N        +R    + 
Sbjct: 53  YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL------NCQPHFDLQNRGVVSMV 106

Query: 62  IDPATQMDAGIYECYADNMYNVDTRTFK 89
           I   T+  AG Y  +  +     T  F 
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFT 134

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 9/81 (11%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
            + ++   +C+++  P P + W     +  +       +        K +  +      D
Sbjct: 152 KMENQDALVCISESVPEPIVEWVLCDSQGES------CKEESPAVVKKEEKVLHELFGTD 205

Query: 70  AGIYECYADNMYNVDTRTFKT 90
                C A N    +     T
Sbjct: 206 ---IRCCARNELGRECTRLFT 223

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 59.7 bits (144), Expect = 3e-12
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 5   FDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIK--SKIE 61
             +    G     +C  K      +  W K   +      V  + WH G    +    + 
Sbjct: 196 TSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLT 255

Query: 62  IDPATQMDAGIYECYADNMYNVDTRTF 88
           I  A   D+G++ CYA+N +     T 
Sbjct: 256 ISSARVDDSGVFMCYANNTFGSANVTT 282

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 8/69 (11%)

Query: 12  GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
               +  C          +  + DG  L T +    +        I      +       
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK--AGITI-----KNVKRAYHR 158

Query: 71  GIYECYADN 79
               C A  
Sbjct: 159 LCVRCAAQR 167

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 56.5 bits (137), Expect = 3e-12
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +    G    FI   + KP   + W+ +GVEL     +     HY        +EI   
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI-----HYTNTSGVLTLEILDC 71

Query: 66 TQMDAGIYECYADN 79
             D+G Y     N
Sbjct: 72 HTDDSGTYRAVCTN 85

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +   + G     +C A         + +              ++H    +    + +D  
Sbjct: 195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI--PQQSDFHNNRYQKVLTLNLDQV 252

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
               AG Y C A N+    + +
Sbjct: 253 DFQHAGNYSCVASNVQGKHSTS 274

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 10/70 (14%)

Query: 12  GHKIVFICMAKG-KPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
               +  C+         ++  +  G  L  H   +   WH           I  A  + 
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--------FTIHRAKFIQ 155

Query: 70  AGIYECYADN 79
           +  Y+C A  
Sbjct: 156 SQDYQCSALM 165

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.3 bits (143), Expect = 4e-12
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 5   FDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
              +       +  C++  G+P   ITW  D   +     V       GT  + S   + 
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILV 182

Query: 64  PATQMDAGIYECYADNM 80
           P++Q+D     C  ++ 
Sbjct: 183 PSSQVDGKNVTCKVEHE 199

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 12/75 (16%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           +  Y+  ++    C A+  P P    W      L                   +++ I P
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-----------GAQLLIRP 274

Query: 65  ATQMDAGIYECYADN 79
             +       C   N
Sbjct: 275 VDKPINTTLICNVTN 289

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 18/89 (20%)

Query: 10  VLGHKIVFICMAKGKPRP-----HITWFKDGVELYTHMYVNLHEWHY-GTDRIK------ 57
            LG  +   C  +           +TW + G      ++       Y  + R++      
Sbjct: 13  FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72

Query: 58  ------SKIEIDPATQMDAGIYECYADNM 80
                 + + +      D G Y C     
Sbjct: 73  GAELRNASLRMFGLRVEDEGNYTCLFVTF 101

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.8 bits (137), Expect = 4e-12
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 10  VLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLH-EWHYGTDRIKSKIEIDPATQ 67
           + G K    C  +  P P  I W      L +        E     + + S + I    +
Sbjct: 26  LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 85

Query: 68  MD-AGIYECYADNMYNVDTRTFK 89
            D   IY C A N +  DT   +
Sbjct: 86  ADFQTIYNCTAWNSFGSDTEIIR 108

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 56.5 bits (136), Expect = 4e-12
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 6   DYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELYTHM---YVNLHEWHYGTDRIKS- 58
                +G  I FI   K +    +P I WFK            ++ L E      R+ + 
Sbjct: 16  GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75

Query: 59  KIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
           +++I  A    AG Y C        D+ +F 
Sbjct: 76  EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFD 106

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 59.2 bits (143), Expect = 5e-12
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 16/83 (19%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D  Y+ G  +   C +   P P  +W  +G+                       + I   
Sbjct: 568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT----------------QVLFIAKI 611

Query: 66  TQMDAGIYECYADNMYNVDTRTF 88
           T  + G Y C+  N+      + 
Sbjct: 612 TPNNNGTYACFVSNLATGRNNSI 634

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 16/82 (19%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           +  Y  G  +   C A   P    +WF +G    +                  ++ I   
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST----------------QELFIPNI 255

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
           T  ++G Y C A N      RT
Sbjct: 256 TVNNSGSYTCQAHNSDTGLNRT 277

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
              Y  G  +   C A   P    +W  DG                       ++ I   
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT----------------QELFISNI 433

Query: 66  TQMDAGIYECYADN 79
           T+ ++G+Y C A+N
Sbjct: 434 TEKNSGLYTCQANN 447

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 8/68 (11%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
              + F C  + +      W+ +G  L                     + +   T+ DA 
Sbjct: 482 KDAVAFTCEPEAQNTT-YLWWVNGQSL-------PVSPRLQLSNGNRTLTLFNVTRNDAR 533

Query: 72  IYECYADN 79
            Y C   N
Sbjct: 534 AYVCGIQN 541

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 8/68 (11%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
              + F C  + +      W+ +   L     + L             + +   T+ D  
Sbjct: 126 KDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNG-------NRTLTLFNVTRNDTA 177

Query: 72  IYECYADN 79
            Y+C   N
Sbjct: 178 SYKCETQN 185

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 11/86 (12%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-----------I 60
          G +++ +     +     +W+K          +             +            +
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73

Query: 61 EIDPATQMDAGIYECYADNMYNVDTR 86
           I    Q D G Y  +      V+  
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEE 99

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 47.3 bits (112), Expect = 8e-08
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 8/69 (11%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
              +   C  + +      W+ +   L     + L             + +   T+ D G
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN-------DNRTLTLLSVTRNDVG 355

Query: 72  IYECYADNM 80
            YEC   N 
Sbjct: 356 PYECGIQNE 364

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 57.6 bits (139), Expect = 6e-12
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 10 VLGHKIVFICMAKGK-PRPHITWFKDGVEL----YTHMYVNLHEWHYGTDRIKSKIEIDP 64
            G      C  + +   P + W +DG  L     T   V L E       + S++ I  
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74

Query: 65 ATQMDAGIYECYADNMY 81
              D G Y+C     +
Sbjct: 75 LQLSDTGQYQCLVFLGH 91

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 13/75 (17%)

Query: 6   DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           D            C A+G P P  + W +D V L T                +  + +  
Sbjct: 115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG----------HGPQRSLHVPG 164

Query: 65  ATQMDAGIYECYADN 79
                   + C A N
Sbjct: 165 LN--KTSSFSCEAHN 177

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          + +   G      C    + +  +TW+KDG +L +   V +            ++ +  A
Sbjct: 20 EVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQA 73

Query: 66 TQMDAGIYECYADN 79
           Q +AG Y C A  
Sbjct: 74 GQAEAGEYSCEAGG 87

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.1 bits (133), Expect = 1e-11
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D +   G    F C         + WF D   L+ +    + +   G       + +   
Sbjct: 22 DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI-DAQPGGYH---VLTLRQL 77

Query: 66 TQMDAGIYECYADN 79
             D+G     A +
Sbjct: 78 ALKDSGTIYFEAGD 91

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 54.8 bits (132), Expect = 1e-11
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          G  + FIC AK   P   + W +            L       + I   + I      DA
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNGK-------LPSRAMDFNGI---LTIRNVQPSDA 74

Query: 71 GIYECYADNMYNVDTRT 87
          G Y C   NM+ +D  T
Sbjct: 75 GTYVCTGSNMFAMDQGT 91

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 7   YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-------YTHMYVNLHEWHYGTDRIKSK 59
            E  LG +I  IC   G+      W  +G  +           Y   +  +     + + 
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278

Query: 60  IEIDPATQMD-AGIYECYADNMYNVDTRTFK 89
           + I           + C+A N + +D    +
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 14/91 (15%)

Query: 11  LGHKIVFIC------MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
           +      +C        +    P + W+KD           L   +     +K ++ +  
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP--------LLLDNIHFSGVKDRLIVMN 168

Query: 65  ATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
             +   G Y C+A   Y              
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 46.6 bits (110), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 10/81 (12%)

Query: 16 VFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
          V  C       +  ITW+KD  +             +       K+   PA   D+G Y 
Sbjct: 24 VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-----EKLWFVPAKVEDSGHYY 78

Query: 75 CYADNMYNVDTRTFKTDFSIT 95
          C   N     +   +   S  
Sbjct: 79 CVVRN----SSYCLRIKISAK 95

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDG-VELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
               + G     +C A           K G  +L   +  +  + +Y   R    + ++ 
Sbjct: 195 KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA---LSLNA 251

Query: 65  ATQMDAGIYECYADNMYNVDTRTF 88
               DAGIY C A N     T T 
Sbjct: 252 VDFQDAGIYSCVASNDVGTRTATM 275

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)

Query: 6   DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVE-LYTHMYVNLHEWHYGTDRIKSKIEID 63
           +   V G + V  C+      +  ++  ++G   +          W            I 
Sbjct: 98  EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--------FIIR 149

Query: 64  PATQMDAGIYECYADNM 80
            A  +D+  Y C     
Sbjct: 150 KAKVLDSNTYVCKTMVN 166

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 14/77 (18%)

Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
           G  +   C++ G     + W                 W    +   S +    AT  + 
Sbjct: 18 PGETVTLRCVSNG----SVEWDGPISPY----------WTLDPESPGSTLTTRNATFKNT 63

Query: 71 GIYECYADNMYNVDTRT 87
          G Y C         + T
Sbjct: 64 GTYRCTELEDPMAGSTT 80

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 54.8 bits (132), Expect = 2e-11
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
              V   ++V  C    +P   + W KDG E+     + L +     +    ++ +   
Sbjct: 22 YVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAV 75

Query: 66 TQMDAGIYECYADN 79
             D+G Y C  D+
Sbjct: 76 QLEDSGEYLCEIDD 89

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 6  DYEYVLGHKIVFI-CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
            E +   ++ F     K      + +  +  E++       ++ H   +    ++ ++ 
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEK 67

Query: 65 ATQMDAGIYECYADNMYNVDTRT 87
              D G Y     +    +  T
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHST 90

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 6   DYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
            +E      ++  C     K   HI W+KD  E+         +  +        + I  
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-------DEKHDFKDGICTLLITE 177

Query: 65  ATQMDAGIYECYADNMYNVDTRTFK 89
            ++ DAGIYE    +    D    K
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLK 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 7/81 (8%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY-GTDRIKSKIEIDPATQM 68
             GH + F+C A G P P I W      L +            GT      +E+  A   
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT------LEVRYAQVQ 451

Query: 69  DAGIYECYADNMYNVDTRTFK 89
           D G Y C A N    D+    
Sbjct: 452 DNGTYLCIAANAGGNDSMPAH 472

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.3 bits (131), Expect = 2e-11
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
             +    ++V  C    +     TW+KDG ++     + +       D  K ++ +  A
Sbjct: 19 SLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEA 72

Query: 66 TQMDAGIYECYADN 79
             D+G +EC  + 
Sbjct: 73 KVQDSGEFECRTEG 86

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 57.0 bits (137), Expect = 3e-11
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 17  FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
                + K    I W+KD + L      +     + + R  + + +      DAG Y C 
Sbjct: 145 LSEFTRDKTDVKIQWYKDSLLL------DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198

Query: 77  ADNMYN 82
               + 
Sbjct: 199 LTFAHE 204

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 50.5 bits (120), Expect = 6e-09
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 15  IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
           + +   A   PR ++TW K+              W          + + PA Q D+G Y 
Sbjct: 43  VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD-----GALWLLPALQEDSGTYV 97

Query: 75  CYADNMYNVDTRTFK 89
           C   N    D  + +
Sbjct: 98  CTTRNASYCDKMSIE 112

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 12/86 (13%)

Query: 6   DYEYVLGHKIVFICMA---KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK--- 59
                LG ++   C      G P   + W+          Y                   
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNEN 294

Query: 60  -----IEIDPATQMDAGI-YECYADN 79
                +  DP T+ D  + ++C   N
Sbjct: 295 YIEVPLIFDPVTREDLHMDFKCVVHN 320

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 18/83 (21%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           ++ +    +   +C A G P P +   KDG                         E    
Sbjct: 194 NWTWPENSQQTPMCQAWGNPLPELKCLKDG------------------TFPLPIGESVTV 235

Query: 66  TQMDAGIYECYADNMYNVDTRTF 88
           T+   G Y C A +     TR  
Sbjct: 236 TRDLEGTYLCRARSTQGEVTREV 258

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 53.5 bits (129), Expect = 4e-11
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D     G  +   C       P + W KD   +      ++       +   + + I  A
Sbjct: 17 DQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTMAMLVIRGA 70

Query: 66 TQMDAGIYECYADN 79
          +  DAG Y C  + 
Sbjct: 71 SLKDAGEYTCEVEA 84

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.1 bits (128), Expect = 7e-11
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D +  +G ++        +    + W K+GVEL          + +  D  +  +     
Sbjct: 17 DQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKAR-YRFKKDGKRHILIFSDV 74

Query: 66 TQMDAGIYECYADN 79
           Q D G Y+   + 
Sbjct: 75 VQEDRGRYQVITNG 88

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 9/89 (10%)

Query: 1   MHSHFDYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
           +   ++      + I   C +   K   +ITW+K+  EL                +    
Sbjct: 132 IPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IIDGTKYSQSGQN 183

Query: 60  IEIDPATQMDAGIYECYADNMYNVDTRTF 88
           + I      D+G Y+CY            
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDI 212

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 52.5 bits (125), Expect = 1e-09
 Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 5/87 (5%)

Query: 6   DYEYVLGHKIVFICMAKGKPRP----HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
                +G      C A           I W      +    +             ++ + 
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296

Query: 62  IDPATQMDAG-IYECYADNMYNVDTRT 87
            +  T+   G  Y C   N Y   T T
Sbjct: 297 FENVTEEYIGNTYTCRGHNYYFDKTLT 323

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           G    ++   K      + +  +  E++       ++ H   +    ++ ++     D G
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEKLQDEDEG 179

Query: 72  IYECYADN 79
            Y     +
Sbjct: 180 TYTFQLQD 187

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 6   DYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
            +E      ++  C     K   HI W+KD  E+      +              + I  
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-------KDGICTLLITE 282

Query: 65  ATQMDAGIYECYADNMYNVDTRTFK 89
            ++ DAGIYE    +    D    K
Sbjct: 283 FSKKDAGIYEVILKDDRGKDKSRLK 307

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
             + F C     P+   +W KD V       + +      +   K+K+        D G
Sbjct: 18 VISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVE-----SKGNKTKMTFKDLGMDDLG 71

Query: 72 IYECYADN 79
          IY C   +
Sbjct: 72 IYSCDVTD 79

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.6 bits (124), Expect = 2e-10
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D     G ++   C    +   ++ WFK+G E+          +    +  K  + I+ A
Sbjct: 16 DTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPG---PKSRYRIRVEGKKHILIIEGA 71

Query: 66 TQMDAGIYECYADN 79
          T+ DA  Y      
Sbjct: 72 TKADAAEYSVMTTG 85

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 51.6 bits (124), Expect = 2e-10
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 16/76 (21%)

Query: 12 GHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-----IEIDPA 65
          G  + ++C  +   +   +TW+    +L        +   Y    I  +     + +   
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLE-------NSEKY---EITYEDGVAILYVKDI 65

Query: 66 TQMDAGIYECYADNMY 81
          T++D G Y C   N Y
Sbjct: 66 TKLDDGTYRCKVVNDY 81

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 51.5 bits (123), Expect = 3e-10
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 6   DYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELYTH---MYVNLHEWHYGTDRI-KS 58
           D E  +G  I F     G      P + WFK      +     ++ LH+ +    ++   
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 59  KIEIDPATQMDAGIYECYADNMYNVDTRTF 88
           ++ I  A     G Y C        D   F
Sbjct: 73  ELHITDAQPAFTGSYRCEVSTKDKFDCSNF 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 51.6 bits (124), Expect = 3e-10
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D       + VF C      +    W+K+GVE+     + +            K+ ID  
Sbjct: 17 DLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDV 70

Query: 66 TQMDAGIYECYADN 79
             D G Y    D 
Sbjct: 71 RPEDEGDYTFVPDG 84

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 6/75 (8%)

Query: 6  DYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
            E + G    F C ++         W   G  + +                K  + +  
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGRKYILVVRE 71

Query: 65 ATQMDAGIYECYADN 79
          A   DAG        
Sbjct: 72 AAPSDAGEVVFSVRG 86

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 8/79 (10%)

Query: 2   HSHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
               D    +G+     C  K G       W K                 +  +     I
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQ-------TMPTPWLAEMTSPVI 178

Query: 61  EIDPATQMDAGIYECYADN 79
            +  A+   +G Y C   N
Sbjct: 179 SVKNASSEYSGTYSCTVQN 197

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 23/103 (22%)

Query: 10  VLGHKIVFICMAKGKPRP----HITWFKDGVE---------LYTHMYVNLHEWHYGTDRI 56
             G      C     P       I W     +         LY+   +  + +     R+
Sbjct: 13  AKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRV 72

Query: 57  ----------KSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
                      + I +      D G Y+C       V  + F 
Sbjct: 73  HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 52.9 bits (126), Expect = 4e-10
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKP--RPHITWFKDGVELYTHMYVNLHEWHYGTDRIK- 57
           +      E  +G K+V  C A+ +        W     +      VN          +K 
Sbjct: 109 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 168

Query: 58  --SKIEIDPATQMDAGIYECYADNMYNVDTRT 87
             S + ID  T+ D G+Y C A +       +
Sbjct: 169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.8 bits (122), Expect = 5e-10
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D E + G      C+      P + W      L      +L +     +    ++ +   
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNL 70

Query: 66 TQMDAGIYECYADN 79
             D+G Y C   +
Sbjct: 71 RPQDSGRYSCSFGD 84

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 50.5 bits (121), Expect = 6e-10
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           Y+   G ++ F+      P+  + W+K+G E+                  +  + I+  
Sbjct: 17 AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNC 70

Query: 66 TQMDAGIYECYADN 79
             D   Y   A +
Sbjct: 71 QMTDDSEYYVTAGD 84

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 6/74 (8%), Positives = 15/74 (20%), Gaps = 15/74 (20%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D   + G  +     +     P +       +                      + +   
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------GGKTLSVSQL 150

Query: 66  TQMDAGIYECYADN 79
              D+G + C    
Sbjct: 151 ELQDSGTWTCTVLQ 164

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 12/80 (15%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVE--LYTHMYVNLHEWHYGTDRIKSKI--------- 60
          G  +   C A  K      W        L               DR  S+          
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 61 -EIDPATQMDAGIYECYADN 79
            I      D+  Y C  ++
Sbjct: 70 LIIKNLKIEDSDTYICEVED 89

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 50.1 bits (119), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 10  VLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVN-LHEWHYGTDRIK--SKIEIDP 64
            +G K+V  C A+ +        W     +      VN   +   G++  K  S + ID 
Sbjct: 21  SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80

Query: 65  ATQMDAGIYECYADNMYNVDTRTF 88
            T+ D G+Y C A +       + 
Sbjct: 81  VTRSDQGLYTCAASSGLMTKKNST 104

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G   VF    +      + W + G ++       L       +  +  + +      D G
Sbjct: 23 GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT-----EGTRHTLTVREVGPADQG 76

Query: 72 IYECYADN 79
           Y   A +
Sbjct: 77 SYAVIAGS 84

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 49.2 bits (118), Expect = 2e-09
 Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 6/74 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            E  +G    F      +P  H  W   G  L       + E     D  K  + +   
Sbjct: 14 GVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNC 67

Query: 66 TQMDAGIYECYADN 79
               G     A N
Sbjct: 68 QLGMTGEVSFQAAN 81

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 51.7 bits (123), Expect = 2e-09
 Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 11/69 (15%)

Query: 12  GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
              +   C A   P      W      L   +            + ++     P     A
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA----------QNRTLFFKGPINYSLA 296

Query: 71  GIYECYADN 79
           G Y C A N
Sbjct: 297 GTYICEATN 305

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 12  GHKIVFICM-AKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
              +V  C  A GKP   ++W         +  +       GT  + S+  + P+ +   
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN---GTVTVISRYRLVPSREAHQ 206

Query: 71  GIYECYADNMYNVDTRTFK 89
               C  +   +    +  
Sbjct: 207 QSLACIVNYHMDRFKESLT 225

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 36.3 bits (83), Expect = 6e-04
 Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 17/87 (19%)

Query: 10  VLGHKIVFICMAKGKPRP----HITWFKD--GVELYTHMYVNLHEWHY-----------G 52
            +G  +V  C             +TW K   G +    +Y                    
Sbjct: 27  FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR 86

Query: 53  TDRIKSKIEIDPATQMDAGIYECYADN 79
                  I +      D G+Y C    
Sbjct: 87  PSFTDGTIRLSRLELEDEGVYICEFAT 113

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           LG +I   C           W K+G+ +     + +            K+ I  A   D
Sbjct: 20 NLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVV-----QKGRIHKLVIANALTED 72

Query: 70 AGIYECYADN 79
           G Y    D 
Sbjct: 73 EGDYVFAPDA 82

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 6/82 (7%), Positives = 15/82 (18%), Gaps = 15/82 (18%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           D   + G  +     +     P +       +                      + +   
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQL 149

Query: 66  TQMDAGIYECYADNMYNVDTRT 87
              D+G + C            
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFK 171

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 12/81 (14%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVE--LYTHMYVNLHEWHYGTDRIKSKI--------- 60
          G  +   C A  K      W        L               DR  S+          
Sbjct: 9  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 61 -EIDPATQMDAGIYECYADNM 80
            I      D+  Y C  ++ 
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQ 89

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 18/78 (23%)

Query: 4   HFDYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
           +         +    C   G   P+  ++   +  E                 ++  + +
Sbjct: 288 NLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEA----------------KVSKREK 331

Query: 62  IDPATQMDAGIYECYADN 79
                  +AG+++C   +
Sbjct: 332 AVWVLNPEAGMWQCLLSD 349

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 51.4 bits (122), Expect = 3e-09
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 18/83 (21%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
           ++ +    +   +C A G P P +   KDG                G             
Sbjct: 379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTF----------PLPIGESV--------TV 420

Query: 66  TQMDAGIYECYADNMYNVDTRTF 88
           T+   G Y C A +     TR  
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREV 443

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 11/83 (13%)

Query: 3   SHFDYEYVLGHKIVFICMAKG-KPRPHIT--WFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
           +       +G  +   C  +G  PR ++T    +   EL               +  +  
Sbjct: 92  APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE--------PAVGEPAEVT 143

Query: 60  IEIDPATQMDAGIYECYADNMYN 82
             +          + C  +    
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLR 166

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 17/74 (22%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
             E   G ++   C A  + +  +                            +++ +   
Sbjct: 292 KPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR-----------------AQLLLKAT 334

Query: 66  TQMDAGIYECYADN 79
            + +   + C A  
Sbjct: 335 PEDNGRSFSCSATL 348

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 50.4 bits (120), Expect = 3e-09
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)

Query: 12  GHKIVFICMAKGKPRPHITW-FKDGVE---LYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
              +   C     P PH+ W   +GVE      +  V   +   G+  +   + +     
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK--DGSLSVAVDLSLPKP-- 174

Query: 68  MDAGIYECYADN 79
                  C   N
Sbjct: 175 -WHLPVTCVGKN 185

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 41.2 bits (96), Expect = 8e-06
 Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 15/85 (17%)

Query: 10 VLGHKIVFICMAK---GKPRPHITWFKDG------VELYTHMYVNLHEWHYGT------D 54
           LG ++      +     P   ++WFK G      +    H  V   EW +         
Sbjct: 4  FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63

Query: 55 RIKSKIEIDPATQMDAGIYECYADN 79
               + +  A     G Y C    
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKL 88

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 50.4 bits (120), Expect = 4e-09
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
             ++   C A+G P   ++W    V   T           G  ++ S + + P     + 
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPE----GLYQVTSVLRLKPQ---PSR 170

Query: 72  IYECYADN 79
            + C   N
Sbjct: 171 NFSCMFWN 178

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 4/90 (4%)

Query: 11  LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHE----WHYGTDRIKSKIEIDPAT 66
           +G  +   C    +    +   +  ++   +      E            K+   I    
Sbjct: 16  VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQ 75

Query: 67  QMDAGIYECYADNMYNVDTRTFKTDFSITF 96
             D+G Y C        D +        ++
Sbjct: 76  VRDSGQYRCLVICGAAWDYKYLTVKVKASY 105

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 48.5 bits (116), Expect = 4e-09
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 7/68 (10%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G      C         + W K    L      +L +     D  + +++I   +  DAG
Sbjct: 23 GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAG 75

Query: 72 IYECYADN 79
           Y C    
Sbjct: 76 EYSCMCGQ 83

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEI 62
            +E  LG  +   C  K +    +       ++ +   +  V++     G       +  
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN---GD------LFF 305

Query: 63  DPATQMDAGIYECYADNMYNVDTRTFK 89
                 D G+Y CYA      +T + +
Sbjct: 306 KKVQVEDGGVYTCYAMGETFNETLSVE 332

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 48.5 bits (115), Expect = 5e-09
 Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 5/81 (6%)

Query: 10  VLGHKIVFICMAKGKPRP--HITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEIDP 64
           + G  + F C A           W  D   L       Y +L           + + +  
Sbjct: 23  IXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRN 82

Query: 65  ATQMDAGIYECYADNMYNVDT 85
                 G Y+C   N +    
Sbjct: 83  VEFTSEGXYQCVISNHFGSSY 103

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 6e-09
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          + +       VF C     P   +TW K  +EL         +     + +  ++ I   
Sbjct: 17 NLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISAL 70

Query: 66 TQMDAGIYECYA 77
           + D+  Y C  
Sbjct: 71 EKADSDTYTCDI 82

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.1 bits (115), Expect = 6e-09
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G   V  C         + W+K    L      +L +     D  + +++I      DAG
Sbjct: 34 GATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAEDAG 86

Query: 72 IYECYADN 79
           Y C    
Sbjct: 87 EYLCMCGK 94

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 8/79 (10%)

Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          +G  +   C   G   P  +W             N            S + ++P +  + 
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT--------STLTMNPVSFGNE 66

Query: 71 GIYECYADNMYNVDTRTFK 89
            Y C A        +  +
Sbjct: 67 HSYLCTATCESRKLEKGIQ 85

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 44.8 bits (105), Expect = 5e-07
 Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 4/79 (5%)

Query: 4   HFDYEYVLGHKIVFICMAKG---KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
           H       G  I   C         R  I   K    + +  ++   +      +   ++
Sbjct: 98  HLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS-LEV 156

Query: 61  EIDPATQMDAGIYECYADN 79
              P  +    +  C A  
Sbjct: 157 TFTPVIEDIGKVLVCRAKL 175

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 14/79 (17%)

Query: 12  GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
           G  +   C A   K   ++ ++++G             +H+      S + I        
Sbjct: 97  GEPLALRCHAWKDKLVYNVLYYRNGKAF--------KFFHWN-----SNLTILKTNISHN 143

Query: 71  GIYECYADNMYNVDTRTFK 89
           G Y C     +   +    
Sbjct: 144 GTYHCSGMGKHRYTSAGIS 162

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 16/69 (23%)

Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
             +   C     P      WF +G    T                     I  A+  D+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------------TPSYRITSASVNDS 60

Query: 71 GIYECYADN 79
          G Y C    
Sbjct: 61 GEYRCQRGL 69

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 18/73 (24%)

Query: 12  GHKIVFICMAKGKPRPHIT-----WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
           G+ +   C  K   +         ++             L   +       S+ +I  A 
Sbjct: 185 GNLVTLSCETKLLLQRPGLQLYFSFYMGSK--------TLRGRNTS-----SEYQILTAR 231

Query: 67  QMDAGIYECYADN 79
           + D+G+Y C A  
Sbjct: 232 REDSGLYWCEAAT 244

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 15/71 (21%), Positives = 17/71 (23%), Gaps = 14/71 (19%)

Query: 11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
          LG KI+  C             W K GV L                    K E    +  
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKE------------DALPGQKTEFKVDSDD 59

Query: 69 DAGIYECYADN 79
            G Y C    
Sbjct: 60 QWGEYSCVFLP 70

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 46.9 bits (111), Expect = 7e-08
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 12  GHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHE-WHYGTDRIKSKIEIDPAT-QM 68
           G   + +C ++  P      W+K        +       +   + + +S++ I+    + 
Sbjct: 98  GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157

Query: 69  DAGIYECYADNMYNVDTRTFK 89
           D G Y C   +    D     
Sbjct: 158 DPGQYRCNGTSSKGSDQAIIT 178

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 12/80 (15%), Positives = 20/80 (25%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           +  H + F           + W+    +      +N         + K  +   P    D
Sbjct: 31  LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90

Query: 70  AGIYECYADNMYNVDTRTFK 89
            G Y C   N        F 
Sbjct: 91  TGNYTCMLRNTTYCSKVAFP 110

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 9/64 (14%)

Query: 19  CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
                  +P ITW+    ++         +           +    A   + G Y C   
Sbjct: 147 GYFPSSVKPTITWYMGCYKI---------QNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197

Query: 79  NMYN 82
              N
Sbjct: 198 YPEN 201

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 3   SHFDYEYVLGHKIVFICMA----KGKPRPHITWFKDGV---ELYTHMYVNLHEWHYGT-- 53
            H  YE   G +++  C          R  + W  DG    ++   + +N    H  T  
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291

Query: 54  DRIKSKIEIDPATQMD-AGIYECYADNMYNVDTRTFK 89
           +     + I   T  D    Y C+A +      +  K
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM-DA 70
           G  ++  C     P   I W  +   +         E        +  + +   +++  +
Sbjct: 128 GTTVILTCPQY--PGSEILWQHNDKNI------GGDEDDKNIGSDEDHLSLKEFSELEQS 179

Query: 71  GIYECYADNMYNVDTRTF 88
           G Y CY       D   +
Sbjct: 180 GYYVCYPRGSKPEDANFY 197

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 46.8 bits (110), Expect = 7e-08
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 15/77 (19%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
             ++  C        +ITWFKDG  +                  K K  +    +   G
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGF------------LTEDKKKWNLGSNAKDPRG 62

Query: 72 IYECYADNMYNVDTRTF 88
          +Y+C      +   + +
Sbjct: 63 MYQCKGSQNKSKPLQVY 79

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 6   DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
             E+  G  I+  C +   KP   +T+F++G                    +     I  
Sbjct: 94  HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ-------------KFSHLDPTFSIPQ 140

Query: 65  ATQMDAGIYECYADNMYNVDT 85
           A    +G Y C  +  Y + +
Sbjct: 141 ANHSHSGDYHCTGNIGYTLFS 161

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 17/69 (24%), Gaps = 16/69 (23%)

Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
             +   C     P    I WF +G  + TH                       A   D+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------------TQPSYRFKANNNDS 63

Query: 71 GIYECYADN 79
          G Y C    
Sbjct: 64 GEYTCQTGQ 72

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 10/86 (11%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEID 63
           D     G      C     P   + W      + +H   +  +   + GT      +   
Sbjct: 361 DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT------LNFS 412

Query: 64  PATQMDAGIYECYADNMYNVDTRTFK 89
                D G+Y C   N+      +  
Sbjct: 413 HVLLSDTGVYTCMVTNVAGNSNASAY 438

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 14/71 (19%)

Query: 12  GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
           G  +   C          + ++KDG  L                     I I  AT  D+
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEAL-------------KYWYENHNISITNATVEDS 146

Query: 71  GIYECYADNMY 81
           G Y C      
Sbjct: 147 GTYYCTGKVWQ 157

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 16/69 (23%)

Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          G  +   C            WF +G                      S + I  A   D+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------------NSSLNIVNAKFEDS 63

Query: 71 GIYECYADN 79
          G Y+C    
Sbjct: 64 GEYKCQHQQ 72

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 9/99 (9%)

Query: 8   EYVLGHKIVFICMAK-GKPRPHITWFKDGVEL--------YTHMYVNLHEWHYGTDRIKS 58
                 + +  C ++ G P P ITW+++G  L          +M         G   + S
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189

Query: 59  KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
            + +          + C A               +    
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 6/91 (6%)

Query: 10  VLGHKIVFIC--MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIEID 63
            LG  I               I W K   +     +    E     D  K      ++I 
Sbjct: 12  ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71

Query: 64  PATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
                D  IY+    +    +      D  I
Sbjct: 72  HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 16/71 (22%)

Query: 9   YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
                     C       P +  ++DG  L                ++  ++     T  
Sbjct: 112 SWTCINTTLTCEVMNGTDPELNLYQDGKHL----------------KLSQRVITHKWTTS 155

Query: 69  DAGIYECYADN 79
            +  ++C A N
Sbjct: 156 LSAKFKCTAGN 166

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVEL----YTHMYVNLHEWHYGTDRIKSK-------- 59
           G+ I   C        ++TW+                  ++  +G     S+        
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210

Query: 60  ----IEIDPATQMDAGIYECYADN 79
               + I  A   DAG   C    
Sbjct: 211 GARNLVIRAAKITDAGRVWCELAT 234

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 27/96 (28%)

Query: 11  LGHKIVFIC---MAKGKPRPHITWFKDG------------------VELYTHMYVNLHEW 49
            G  +   C   +A     P I+W K                       +         +
Sbjct: 16  AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75

Query: 50  HYGTDRI------KSKIEIDPATQMDAGIYECYADN 79
                R          + +      D G Y C    
Sbjct: 76  GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 6e-08
 Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 9/86 (10%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEID 63
           D     G      C A       ++W      + TH    V +     GT      +   
Sbjct: 350 DLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT------LNFT 402

Query: 64  PATQMDAGIYECYADNMYNVDTRTFK 89
             T  D G+Y C   N     T +  
Sbjct: 403 NVTVQDTGMYTCMVSNSVGNTTASAT 428

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.4 bits (108), Expect = 6e-08
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          GHKI             + W K+G E+      +  ++ + +   K  + I   +  D  
Sbjct: 31 GHKIRLTVEL-ADHDAEVKWLKNGQEIQM----SGSKYIFESIGAKRTLTISQCSLADDA 85

Query: 72 IYECYADN 79
           Y+C    
Sbjct: 86 AYQCVVGG 93

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 46.9 bits (111), Expect = 9e-08
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 12  GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
             +    C A+G P+  + W   D   L         +       + S + I+       
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TN 187

Query: 71  GIYECYADN 79
            I+ C    
Sbjct: 188 EIFYCTFRR 196

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 16/69 (23%)

Query: 12 GHKIVFICMAKGKPRPHIT-WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
             +   C     P  + T WF +   + +                 S   ID AT  D+
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------------ASSYFIDAATVNDS 66

Query: 71 GIYECYADN 79
          G Y C  + 
Sbjct: 67 GEYRCQTNL 75

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 14/72 (19%)

Query: 9   YVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
           +     I   C +        +T+ ++G +           +H+      S   I  AT 
Sbjct: 100 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDR--------KYFHHN-----SDFHIPKATL 146

Query: 68  MDAGIYECYADN 79
            D+G Y C    
Sbjct: 147 KDSGSYFCRGLV 158

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 43.7 bits (103), Expect = 3e-07
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 4/70 (5%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHY---GTDRIKSKIEIDPA 65
          V G   +  C         + W       LY      L +           +  I +   
Sbjct: 19 VEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78

Query: 66 TQMDAGIYEC 75
          +  D G Y C
Sbjct: 79 SLSDEGQYTC 88

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 45.0 bits (106), Expect = 4e-07
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 18/90 (20%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--- 57
                +        +   C++      +I W  +   L              T+R+    
Sbjct: 114 FLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQL------------TERMTLSQ 160

Query: 58  --SKIEIDPATQMDAGIYECYADNMYNVDT 85
             S + IDP  + DAG Y+C   N  +V  
Sbjct: 161 NNSILRIDPIKREDAGEYQCEISNPVSVRR 190

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 11/80 (13%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLH---------EWHYGTDRIKS--KI 60
           + ++ +            W+K                       + + G + I S   +
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 61 EIDPATQMDAGIYECYADNM 80
               T  D G+Y     + 
Sbjct: 74 LFQMITMKDMGVYTLDMTDE 93

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 14/73 (19%)

Query: 8   EYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
            +     I   C +      H +T+ ++G             +H+      S   I  AT
Sbjct: 99  VFKEEDPIHLRCHSWKNTALHKVTYLQNGK--------GRKYFHHN-----SDFYIPKAT 145

Query: 67  QMDAGIYECYADN 79
             D+G Y C    
Sbjct: 146 LKDSGSYFCRGLV 158

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 16/69 (23%)

Query: 12 GHKIVFICMAKGKPRPHIT-WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
             +   C     P    T WF +   + +                 S   ID AT  D+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------------ASSYFIDAATVDDS 66

Query: 71 GIYECYADN 79
          G Y C    
Sbjct: 67 GEYRCQTQL 75

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (97), Expect = 3e-06
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 7/84 (8%)

Query: 12  GHKIVFICMAKGKP---RPHITWFKDGVELYTH---MYVNLHEWHYGTDRIKS-KIEIDP 64
           G   V +    GK    +P I WFK              +  E H     + + ++ I  
Sbjct: 27  GKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGK 86

Query: 65  ATQMDAGIYECYADNMYNVDTRTF 88
               D G Y          D+  F
Sbjct: 87  VVLGDRGYYRLEVKAKDTCDSCGF 110

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 2/75 (2%)

Query: 7   YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
               + +   F+C         +     G       +      +         + I    
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRA--PAFEGRILLNPQDKDGSFSVVITGLR 298

Query: 67  QMDAGIYECYADNMY 81
           + DAG Y C A +  
Sbjct: 299 KEDAGRYLCGAHSDG 313

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 2/73 (2%)

Query: 17  FICMAKGKPRPHITWFKDGVEL--YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
           F C      +    W   G +         +    +   +     + ++  T+ D G Y 
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525

Query: 75  CYADNMYNVDTRT 87
           C     +      
Sbjct: 526 CGVKQGHFYGETA 538

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 14/99 (14%)

Query: 1   MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-- 58
             S    + V G  +  +C    K    I ++             L +            
Sbjct: 335 PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394

Query: 59  ------------KIEIDPATQMDAGIYECYADNMYNVDT 85
                        + ++  T  DAG Y C  +      T
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRT 433

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 4   HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
             + E   G    F C A G+       +  G+++              + R  +   + 
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK--EIKVTSSRRFIASFNVV 228

Query: 64  PATQMDAGIYECYADNMYNVDT 85
             T+ DAG Y C       V  
Sbjct: 229 NTTKRDAGKYRCMIRTEGGVGI 250

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 15/78 (19%)

Query: 2   HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
           +            ++  C   G     I W KDG  +               +  K+   
Sbjct: 112 NLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISP------------LNATKNTWN 156

Query: 62  IDPATQMDAGIYECYADN 79
           +    +   G Y+C    
Sbjct: 157 LGNNAKDPRGTYQCQGAK 174

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 12  GHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
            +    IC   G  P PH++W ++G EL         +       + SK++ +       
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMT---TN 177

Query: 71  GIYECYADN 79
             + C    
Sbjct: 178 HSFMCLIKY 186

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 24/81 (29%), Gaps = 15/81 (18%)

Query: 6   DYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-----YTHMYVNLHEWHYGTDRIKSKI 60
             E   G    F C       P +TW KD  EL     Y   Y          +     +
Sbjct: 491 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----------NGNDYGL 540

Query: 61  EIDPATQMDAGIYECYADNMY 81
            I+     D G Y   A N Y
Sbjct: 541 TINRVKGDDKGEYTVRAKNSY 561

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 15/70 (21%), Positives = 18/70 (25%), Gaps = 4/70 (5%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPA 65
           V G  +V  C  K      + W       LY      L +              I I   
Sbjct: 51  VAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNV 110

Query: 66  TQMDAGIYEC 75
              D G Y C
Sbjct: 111 ALADEGEYTC 120

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPA 65
            G  +   C+   +    + W    G  ++ + Y  L    Y      +    I +   
Sbjct: 14 EEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73

Query: 66 TQMDAGIYECYA 77
          T  D G+Y+C  
Sbjct: 74 TLQDEGVYKCLH 85

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 9/70 (12%)

Query: 11 LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
           G  +   C     +    + W        +H              +  ++ +      D
Sbjct: 20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--------PSRWAGMGRRLLLRSVQLHD 71

Query: 70 AGIYECYADN 79
          +G Y CY   
Sbjct: 72 SGNYSCYRAG 81

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 19/83 (22%)

Query: 12 GHKIVFICMAKG-KPRPH---ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
          G          G +P P     TW KD      +                + + +  AT 
Sbjct: 17 GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN---------------TATLTVADATS 61

Query: 68 MDAGIYECYADNMYNVDTRTFKT 90
           +AG Y+    +   + +   + 
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEV 84

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 8/89 (8%)

Query: 10 VLGHKIVFIC--MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK----IEID 63
           LGH I               + W +    +    +    +    +   +      ++I 
Sbjct: 9  ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAE--FKRKMKPFLKSGAFEILANGDLKIK 66

Query: 64 PATQMDAGIYECYADNMYNVDTRTFKTDF 92
            T+ D+G Y     +           D 
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDL 95

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 14/101 (13%), Positives = 23/101 (22%), Gaps = 22/101 (21%)

Query: 11  LGHKIVFICMAKGKPRPH---ITWFKDG--------VELYTHMYVNLHEWHYGTDRIKSK 59
           +G      C  +         + W            V  Y     +      G  R +  
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191

Query: 60  -----------IEIDPATQMDAGIYECYADNMYNVDTRTFK 89
                      I++    + D GIY C          +T  
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 18/88 (20%)

Query: 10  VLGHKIVFICM---AKGKPRPHITWFK---------------DGVELYTHMYVNLHEWHY 51
            +G  ++  C+    + K    + W                   + + T  + N      
Sbjct: 18  HVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG 77

Query: 52  GTDRIKSKIEIDPATQMDAGIYECYADN 79
            T      + +    + D GIY C    
Sbjct: 78  DTFHNDGSLLLQDVQKADEGIYTCEIRL 105

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 11/75 (14%)

Query: 10 VLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG---TDRIKSK----I 60
            G  I+  C           + W +    L          WH      DR+       +
Sbjct: 16 EKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAI--CNADLGWHISPSFKDRVAPGPGLGL 73

Query: 61 EIDPATQMDAGIYEC 75
           +   T  D G Y C
Sbjct: 74 TLQSLTVNDTGEYFC 88

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 6/75 (8%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE-----IDP 64
          V+   + F       P   + W K   ++          +    +R+          I  
Sbjct: 8  VVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66

Query: 65 ATQMDAGIYECYADN 79
           T  D   YE  + N
Sbjct: 67 LTSSDEDEYEMESPN 81

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 11/70 (15%)

Query: 11 LGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
          LG      C          + W      L              +D  +S + +  A+   
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLDTSL----------GAVQSDTGRSVLTVRNASLSA 70

Query: 70 AGIYECYADN 79
          AG   C    
Sbjct: 71 AGTRVCVGSC 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.86
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.85
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.79
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.79
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.79
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.79
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.79
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.79
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.78
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.78
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.78
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.78
1he7_A	126	High affinity nerve growth factor receptor; transf	99.77
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.77
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.77
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.75
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.75
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.75
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.75
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.74
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.74
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.73
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.73
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.73
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.72
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.72
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.72
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.72
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.71
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.71
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.71
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.7
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.7
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.69
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.69
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.69
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.68
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.67
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.66
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.66
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.65
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.65
2ens_A	96	Advanced glycosylation END product-specific recept	99.65
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.65
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.62
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.62
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.62
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.62
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.62
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.62
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.61
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.61
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.61
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.6
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.6
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.6
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.6
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.6
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.6
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.59
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.59
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.58
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.58
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.58
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.58
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.58
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.58
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.58
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.58
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.57
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.57
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.57
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.56
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.56
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.56
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.56
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.56
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.56
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.55
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.55
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.55
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.54
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.54
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.54
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.54
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.54
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.54
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.54
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.54
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.54
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.53
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.53
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.53
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.53
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.53
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.53
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.52
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.52
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.52
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.52
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.52
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.52
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.52
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.51
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.51
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.51
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.51
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.5
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.5
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.5
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.5
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.5
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.49
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.49
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.49
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.48
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.48
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.48
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.48
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.48
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.48
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.47
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.47
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.47
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.47
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.47
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.47
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.46
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.46
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.46
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.46
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.45
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.45
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.45
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.44
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.44
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.44
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.44
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.43
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.43
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.42
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.42
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.42
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.42
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.41
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.41
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.4
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.4
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.4
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.39
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.39
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.39
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.39
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.39
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.38
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.38
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.38
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.38
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.37
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.37
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.37
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.37
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.37
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.37
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.36
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.36
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.36
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.35
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.35
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.35
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.35
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.35
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.34
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.34
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.34
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.34
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.33
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.33
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.33
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.33
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.33
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.32
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.32
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.32
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.32
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.31
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.31
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.31
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.31
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.31
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.3
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.3
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.3
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.3
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.3
3khq_A	133	B-cell antigen receptor complex-associated protei	99.3
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.3
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.3
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.3
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.29
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.29
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.29
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.29
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.28
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.28
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.28
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.28
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.28
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.27
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.27
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.27
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.27
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.27
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.26
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.26
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.26
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.26
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.26
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.25
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.24
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.23
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.23
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.23
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.23
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.23
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.23
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.23
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.22
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.22
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.22
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.22
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.22
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.2
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.2
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.2
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.2
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.2
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.2
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.19
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.19
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.19
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.19
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.19
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.19
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.19
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.19
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.18
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.18
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.18
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.18
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.18
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.18
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.18
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.17
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.17
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.17
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.17
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.17
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.17
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.17
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.17
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.16
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.16
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.16
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.16
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.16
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.16
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.16
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.15
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.15
1xt5_A	135	Variable region-containing chitin-binding protein	99.15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.15
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.15
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.15
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.15
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.15
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.15
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.14
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.14
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.14
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.14
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.14
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.14
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.13
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.13
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.13
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.13
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.13
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.13
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.12
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.12
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.12
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.12
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.12
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.12
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.1
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.1
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	99.1
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.1
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.09
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.09
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.09
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.09
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.09
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.08
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.08
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.08
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.08
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.07
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.07
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.07
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.07
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.07
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.07
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.06
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.06
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.06
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.06
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.06
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.06
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.05
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.05
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.05
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.05
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.05
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.05
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.05
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.05
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.05
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.04
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.03
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.03
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.03
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.03
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.03
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.03
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.03
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.03
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.02
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.02
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.02
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.01
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.01
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.01
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.01
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.01
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.01
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.01
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.01
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.01
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.0
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.0
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.0
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.0
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.0
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.0
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.0
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.99
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.99
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.99
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.99
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.98
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.98
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.98
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.98
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.98
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.98
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.98
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.97
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.97
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.97
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.97
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.97
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.97
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.96
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.96
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.96
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.96
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.96
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.95
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.95
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.95
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.5
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.95
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.95
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.95
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.95
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.95
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.94
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.94
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.94
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.94
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.94
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.94
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.93
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.93
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.93
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.92
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.92
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.92
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.92
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.92
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.92
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.92
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.91
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.91
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.91
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.91
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.9
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.9
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.9
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.9
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.9
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.89
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.89
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.89
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.88
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.88
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.88
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.88
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.87
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.87
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.87
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.87
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.86
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.86
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.86
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.86
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.86
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.85
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.85
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.85
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.85
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.85
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.84
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.83
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.83
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.83
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.82
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.82
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.82
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.82
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.81
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.81
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.81
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.81
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.81
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.81
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.81
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.8
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.8
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.8
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.8
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.8
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.79
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.79
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.78
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.77
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.77
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.77
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.77
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.77
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.76
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.76
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	98.76
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.76
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.76
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.76
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.75
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.75
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.75
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.75
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.75
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	98.74

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.86  E-value=8.6e-20  Score=87.07  Aligned_cols=89  Identities=19%  Similarity=0.306  Sum_probs=71.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+......+...   .......+|.|..+...|.|.|.|.+.|..|
T Consensus        11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   87 (100)
T 3knb_A           11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI---ENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG   87 (100)
T ss_dssp             CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEE---EECSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeee---ecccceEEEEEcCCCccCCEEEEEEEEECCC
Confidence            3457889999999999999999999999999999987543222111   1111245799999999999999999999999


Q ss_pred             ceeEEEEEEEEE
Q psy9150          83 VDTRTFKTDFSI   94 (97)
Q Consensus        83 ~~~~~~~~~~~~   94 (97)
                      .....+.|.|..
T Consensus        88 ~~~~~~~l~V~~   99 (100)
T 3knb_A           88 SDSATVNIHIRS   99 (100)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEE
Confidence            998888887754

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.85  E-value=4.9e-20  Score=88.90  Aligned_cols=86  Identities=22%  Similarity=0.334  Sum_probs=71.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+..     .....+|.|..+...|.|.|.|.+.|..|.
T Consensus        20 p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   94 (107)
T 3knb_B           20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA-----DGAEHGLLLTAALPTDAGVYVCRARNAAGE   94 (107)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCE-----ETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEee-----cCceEEEEEecCChhhCEEEEEEEEECCCE
Confidence            356789999999999999999999999999999987665544321     112457999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.|..
T Consensus        95 ~~~~~~l~V~~  105 (107)
T 3knb_B           95 AYAAAAVTVLE  105 (107)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEc
Confidence            88888777653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.79  E-value=3.7e-18  Score=82.94  Aligned_cols=86  Identities=16%  Similarity=0.166  Sum_probs=70.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+..     ......|.|..+...|.|.|.|.+.|..|.
T Consensus        14 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   88 (114)
T 2cqv_A           14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-----SENGSKLTILAARQEHCGCYTLLVENKLGS   88 (114)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE-----CSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             CCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE-----cCCEEEEEECCCChhcCEEEEEEEEECCCc
Confidence            456788999999999999999999999999998876554443321     112458999999999999999999999998


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.+..
T Consensus        89 ~~~~~~l~V~~   99 (114)
T 2cqv_A           89 RQAQVNLTVVD   99 (114)
T ss_dssp             EECCEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            88877777653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.79  E-value=2.3e-17  Score=78.20  Aligned_cols=86  Identities=17%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+..+..|+.+.|.|.+.|.|.|.+.|++++..+...........    .....+|.|..+...|.|.|.|.+.|..|.
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~   87 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAGE   87 (99)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEc----CCCEEEEEECCCCcCCCEEEEEEEEECCCc
Confidence            3467789999999999999999999999999998876544332211    111457999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        88 ~~~~~~l~V~   97 (99)
T 1g1c_A           88 TSSHAFLLVQ   97 (99)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            8887766653

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.79  E-value=7.3e-18  Score=80.47  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=69.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.+.+.|.|.+.|++++..+....+.....     .....+|.|..+...|.|.|.|.+.|..|.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   89 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-----TSGVLTLEILDCHTDDSGTYRAVCTNYKGE   89 (103)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE-----ETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEE-----CCCEEEEEEcCCCcccCEEEEEEEEeCCCc
Confidence            356788999999999999999999999999999887655443321     111457999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ......|.|.
T Consensus        90 ~~~~~~l~V~   99 (103)
T 3qp3_A           90 ASDYATLDVT   99 (103)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9888877765

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.79  E-value=6.7e-18  Score=80.00  Aligned_cols=86  Identities=24%  Similarity=0.304  Sum_probs=70.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+..|+.+.|.|.+.+.|.|.+.|++++..+....+......     ....+|.|..+...|.|.|.|.+.|..|.
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~   87 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-----KGGFFLEIHKTDTSDSGLYTCTVKNSAGS   87 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe-----CCEEEEEECCCCcccCEEEEEEEEeCCCc
Confidence            3467889999999999999999999999999998876554443211     11347999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.+..
T Consensus        88 ~~~~~~l~V~~   98 (99)
T 3puc_A           88 VSSSCKLTIKA   98 (99)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeEEEEEEEEe
Confidence            98888887764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.79  E-value=1e-17  Score=80.24  Aligned_cols=84  Identities=24%  Similarity=0.425  Sum_probs=65.3

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      .+..+.+.|.+.|.|.|.+.|+++|..+....................+|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            46778899999999999999999999887654332211111223345679999999999999999999999999888877


Q ss_pred             EEEE
Q psy9150          91 DFSI   94 (97)
Q Consensus        91 ~~~~   94 (97)
                      .+..
T Consensus        95 ~V~~   98 (103)
T 1wwb_X           95 HFMG   98 (103)
T ss_dssp             CCSC
T ss_pred             EECC
Confidence            6643

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.79  E-value=2e-18  Score=81.18  Aligned_cols=82  Identities=20%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ...+.+..|+.+.|.|.+.|.|.|.+.|++++  ..+........     .  .....|.|..+...|.|.|.|.+.|..
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~-----~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA-----K--SSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEE-----E--TTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEe-----c--CCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            45778999999999999999999999999998  77754432211     0  114679999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.|.|
T Consensus        82 G~~~~~~~l~V   92 (93)
T 1wit_A           82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeEEEEEEEEE
Confidence            98888777665

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.7e-17  Score=81.09  Aligned_cols=86  Identities=26%  Similarity=0.386  Sum_probs=69.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ...+.+..|+.+.|.|.+.|.|.|.+.|++++..+.. .+....     .......|.|..+...|.|.|.|.+.|..|.
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~  104 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVR-----TSDFDTVFFVRQAARSDSGEYELSVQIENMK  104 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC-SSCEEE-----ECSSEEEEEESSCCTTTCEEEEEEEECSSCE
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC-CcEEEE-----ECCCeEEEEECCCChhcCEEEEEEEEeCCCe
Confidence            4567889999999999999999999999999998863 222221     1112457999999999999999999999998


Q ss_pred             eeEEEEEEEEEe
Q psy9150          84 DTRTFKTDFSIT   95 (97)
Q Consensus        84 ~~~~~~~~~~~~   95 (97)
                      ....+.|.+...
T Consensus       105 ~~~~~~l~V~~~  116 (118)
T 2e7c_A          105 DTATIRIRVVEK  116 (118)
T ss_dssp             ECCEEEEEEECC
T ss_pred             EEEEEEEEEEcC
Confidence            888887777643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.78  E-value=1.5e-17  Score=79.00  Aligned_cols=86  Identities=19%  Similarity=0.238  Sum_probs=68.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++++..+...........  .  .....|.|..+...|.|.|.|.+.|..|.
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS--E--KGLHSLIFEVVRASDAGAYACVAKNRAGE   87 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEE--T--TTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEc--C--CCeEEEEECCCCcccCEEEEEEEEcCCCe
Confidence            4567889999999999999999999999999988875443222110  1  11347999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        88 ~~~~~~l~V~   97 (100)
T 2kdg_A           88 ATFTVQLDVL   97 (100)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888777664

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.78  E-value=1.8e-17  Score=78.35  Aligned_cols=86  Identities=15%  Similarity=0.240  Sum_probs=70.4

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ++.++.+.+|+.+.|.|.+.+. |.|.+.|++++..+....+.....     ......|.|..+...|.|.|.|.+.|..
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----EDGVAILYVKDITKLDDGTYRCKVVNDY   81 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE-----ETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE-----cCCeEEEEEecCChhhCeEEEEEEECCC
Confidence            5667889999999999999997 899999999999887655444321     1114479999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy9150          82 NVDTRTFKTDFS   93 (97)
Q Consensus        82 g~~~~~~~~~~~   93 (97)
                      |.....+.|.+.
T Consensus        82 g~~~~~~~l~V~   93 (97)
T 2bk8_A           82 GEDSSYAELFVK   93 (97)
T ss_dssp             CEEEEEEEEEET
T ss_pred             CeEeEEEEEEEE
Confidence            998887777664

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.78  E-value=2.9e-17  Score=77.82  Aligned_cols=86  Identities=19%  Similarity=0.351  Sum_probs=67.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +....+..|+.+.|.|.+.+.|.|.+.|++++..+.........    .......+|.|..+...|.|.|.|.+.|..|.
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~   87 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE----EAEGGLCRLRILAAERGDAGFYTCKAVNEYGA   87 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEE----ECGGGEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEE----ECCCCEEEEEEccCCcCCCEEEEEEEEECCCc
Confidence            34667899999999999999999999999999887654321111    11122347999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        88 ~~~~~~l~V~   97 (99)
T 1u2h_A           88 RQCEARLEVR   97 (99)
T ss_dssp             EEEEEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            8887776654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.77  E-value=2.1e-17  Score=81.48  Aligned_cols=83  Identities=16%  Similarity=0.293  Sum_probs=64.6

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEE--ecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWH--YGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      .+..+.|.|.+.|.|.|.+.|+++|..+....+.......  ........+|.|..+...|.|.|+|.|.|..|.....+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            4567889999999999999999999999876543322111  01112356799999999999999999999999998888


Q ss_pred             EEEEE
Q psy9150          89 KTDFS   93 (97)
Q Consensus        89 ~~~~~   93 (97)
                      .|.+.
T Consensus        94 ~l~v~   98 (126)
T 1he7_A           94 MAAFM   98 (126)
T ss_dssp             EECCC
T ss_pred             EEEEE
Confidence            77654

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.75  E-value=1.3e-17  Score=78.65  Aligned_cols=79  Identities=20%  Similarity=0.410  Sum_probs=65.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.+..|+.+.|.|.+.+.| |.+.|++++..+....+....         ...|.|..++..|.|.|.|.+.|..|.
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~g~   85 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT---------GEEVEVRDSIPADSGLYACVTSSPSGS   85 (95)
T ss_dssp             BCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC---------SSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred             cceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe---------CCEEEECCCChHHCEEEEEEeccCCCc
Confidence            4567889999999999999887 899999999887654433221         347999999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        86 ~~~~~~l~V   94 (95)
T 2ckn_A           86 DTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888777665

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.75  E-value=8.5e-17  Score=78.45  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+.....    ......+|.|..+...|.|.|.|.+.|..
T Consensus        21 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   96 (116)
T 2kkq_A           21 KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTVSAVNEA   96 (116)
T ss_dssp             CCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEE----CTTCEEEEEEEEECGGGCEEEEEEEEETT
T ss_pred             CCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEe----CCCCeEEEEECCCCcccCEEEEEEEEcCC
Confidence            345778999999999999999999999999999887642 3333221    11123479999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy9150          82 NVDTRTFKTDFSI   94 (97)
Q Consensus        82 g~~~~~~~~~~~~   94 (97)
                      |.....+.|.|..
T Consensus        97 G~~~~~~~l~V~~  109 (116)
T 2kkq_A           97 GVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CeEEEEEEEEEeC
Confidence            9988877777654

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.75  E-value=1.1e-16  Score=81.47  Aligned_cols=86  Identities=24%  Similarity=0.354  Sum_probs=70.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....+.....    .......|.|..+...|.|.|.|.+.|..|..
T Consensus        49 ~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  124 (154)
T 1fhg_A           49 LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA  124 (154)
T ss_dssp             CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----CTTCEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEE----CCCCeEEEEECCCChhcCEEEEEEEEECCCeE
Confidence            46788999999999999999999999999999887655443321    11114589999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy9150          85 TRTFKTDFSI   94 (97)
Q Consensus        85 ~~~~~~~~~~   94 (97)
                      ...+.|.|..
T Consensus       125 ~~~~~l~V~~  134 (154)
T 1fhg_A          125 TCTAELLVET  134 (154)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            8888777654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.74  E-value=4.7e-18  Score=81.75  Aligned_cols=84  Identities=24%  Similarity=0.398  Sum_probs=68.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.....     .....+|.|..+...|.|.|.|.+.|..|.
T Consensus        21 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   95 (106)
T 1nct_A           21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGK   95 (106)
T ss_dssp             CCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE-----CSSEEEEEECCCCSSCCSEEEECCBCSSCB
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE-----CCCEEEEEECcCCchhCEEEEEEEEeCCCe
Confidence            457788999999999999999999999999998876554443321     112468999999999999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        96 ~~~~~~l~V  104 (106)
T 1nct_A           96 QEAEFTLTI  104 (106)
T ss_dssp             CCEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888777765

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=5.9e-17  Score=78.18  Aligned_cols=87  Identities=23%  Similarity=0.336  Sum_probs=68.4

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+... .++....    .......|.|..+...|.|.|.|.+.|..|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   90 (110)
T 2dm2_A           15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR----DLDGTCSLHTTASTLDDDGNYTIMAANPQG   90 (110)
T ss_dssp             CCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEE----CTTCEEEEEESSCCTTTCSCCEEEEECTTC
T ss_pred             CcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEE----CCCcEEEEEECCCChhhCEEEEEEEEECCC
Confidence            35678899999999999999999999999999887642 2333221    111234799999999999999999999999


Q ss_pred             ceeEEEEEEEEE
Q psy9150          83 VDTRTFKTDFSI   94 (97)
Q Consensus        83 ~~~~~~~~~~~~   94 (97)
                      .....+.|.|..
T Consensus        91 ~~~~~~~l~V~~  102 (110)
T 2dm2_A           91 RISCTGRLMVQA  102 (110)
T ss_dssp             CEEECCCEEEEC
T ss_pred             eEEEEEEEEEEC
Confidence            988777776654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=2.7e-17  Score=78.01  Aligned_cols=81  Identities=23%  Similarity=0.389  Sum_probs=65.0

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.+.|.|.+.|++++..+.......      .  .....|.|..+...|.|.|.|.+.|..|.
T Consensus        18 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~------~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~   89 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC------E--AGVAELHIQDALPEDHGTYTCLAENALGQ   89 (99)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE------E--TTEEEEEECSCCTTCCBCEEEEEECSSCE
T ss_pred             CCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe------e--CCeEEEEECCCChhhCEEEEEEEEECCCe
Confidence            346678899999999999999999999999988776432211      0  11457999999999999999999999998


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        90 ~~~~~~l~V   98 (99)
T 2yr3_A           90 VSCSAWVTV   98 (99)
T ss_dssp             EEEECCEEE
T ss_pred             EEEEEEEEE
Confidence            877766654

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.73  E-value=1.1e-16  Score=75.93  Aligned_cols=84  Identities=21%  Similarity=0.390  Sum_probs=65.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+............ .   ...+|.|..+...|.|.|.|.+.|..|..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-N---QHWSLIMESVVPSDKGNYTCVVENEYGSI   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-G---GGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe-c---CeEEEEEccCCcCCCEEEEEEEEeCCCEE
Confidence            4677889999999999999999999999999887654322110000 0   02379999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.|.|
T Consensus        92 ~~~~~l~V   99 (100)
T 3caf_A           92 NHTYHLDV   99 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            87776654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.73  E-value=7.6e-17  Score=74.60  Aligned_cols=78  Identities=26%  Similarity=0.443  Sum_probs=60.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.+|+.+.|.|.+.+ |.|.+.|+++|..+..........     ......|.|..+...|.|.|.|.+.|    .
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~n----~   73 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ-----AGARQVLRVQGARSGDAGEYLCDAPQ----D   73 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE-----CSSCEEEEESSCSSTTCEEEEEECTT----T
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee-----cCCeEEEEecCCCCcccEEEEEEECC----E
Confidence            5788999999999999966 889999999999998766554432     11235799999999999999998755    3


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.|.|
T Consensus        74 ~~~a~l~V   81 (84)
T 2lu7_A           74 SRIFLVSV   81 (84)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44444443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.72  E-value=3e-17  Score=78.88  Aligned_cols=84  Identities=24%  Similarity=0.375  Sum_probs=60.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+..+..|+.+.|.|.+.|.|.|.+.|++++..+.........    ..   ...|.|..+...|.|.|.|.+.|..|.
T Consensus        17 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~----~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~   89 (108)
T 3kvq_A           17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----DG---NRNLTIRRVRKEDEGLYTCQACSVLGC   89 (108)
T ss_dssp             CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE----TT---TTEEEECSCCGGGCEEEEEEEC----C
T ss_pred             CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe----CC---CcEEEEeecCcccCEEEEEEEEeCCCc
Confidence            35678899999999999999999999999998877654333221    11   247999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.+..
T Consensus        90 ~~~~~~l~V~~  100 (108)
T 3kvq_A           90 AKVEAFFIIEG  100 (108)
T ss_dssp             EEEEEEEEEEC
T ss_pred             eEEEEEEEEeC
Confidence            88888777654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.72  E-value=1.2e-16  Score=74.81  Aligned_cols=76  Identities=22%  Similarity=0.392  Sum_probs=62.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+....              ...|.|..+...|.|.|.|.+.|..|.
T Consensus        10 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~   75 (91)
T 3bfo_A           10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KKLYMVPYVDLEHQGTYWCHVYNDRDS   75 (91)
T ss_dssp             CCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC--------------SSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC--------------CCeEEECCCCHHhCEEEEEEEEcCCCC
Confidence            456678899999999999999999999999998876432              237899999999999999999999997


Q ss_pred             ee-EEEEEEEE
Q psy9150          84 DT-RTFKTDFS   93 (97)
Q Consensus        84 ~~-~~~~~~~~   93 (97)
                      .. ..+.|.+.
T Consensus        76 ~~s~~~~l~V~   86 (91)
T 3bfo_A           76 QDSKKVEIIID   86 (91)
T ss_dssp             EECCCEEEEEC
T ss_pred             EEeeeEEEEEe
Confidence            54 44555553

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.72  E-value=2.4e-15  Score=72.40  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=65.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCC---CeeEEEeCCEEc-cc--cceeeEEEEEec-CceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPR---PHITWFKDGVEL-YT--HMYVNLHEWHYG-TDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~---p~i~w~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +..+.+..|+.+.|.|.+.|.|.   |.+.|++++... ..  ...+........ .......|.|.+++..|.|.|.|.
T Consensus        11 p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (108)
T 3cx2_A           11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCE   90 (108)
T ss_dssp             CCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEE
Confidence            45778999999999999999988   999999976221 11  112222111111 112356899999999999999999


Q ss_pred             EEcCCCceeEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~   93 (97)
                      +.|..|...+.+.|.|.
T Consensus        91 a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           91 VSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EECSSCEEEEEEEEEEE
T ss_pred             EecCCCceEEEEEEEEe
Confidence            99999999888888764

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=6.4e-17  Score=76.83  Aligned_cols=81  Identities=20%  Similarity=0.400  Sum_probs=65.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+..|+.+.|.|.+.+.|.|.+.|++++..+... .+...     ..   ..+|.|..+...|.|.|.|.+.|..|.
T Consensus        16 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~-----~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~   87 (100)
T 2edj_A           16 ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI-----QE---QGTLQIKNLRISDTGTYTCVATSSSGE   87 (100)
T ss_dssp             CCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE-----CT---TCCEEEESCCTTTCCEEEEEEECSSCC
T ss_pred             CCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE-----cC---CCEEEEccCCcccCEEEEEEEEcCCCC
Confidence            4667889999999999999999999999998877632 22211     11   236999999999999999999999998


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        88 ~~~~~~l~V~   97 (100)
T 2edj_A           88 TSWSAVLDVT   97 (100)
T ss_dssp             CBCCEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            8877776664

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.71  E-value=3e-16  Score=73.88  Aligned_cols=80  Identities=29%  Similarity=0.452  Sum_probs=65.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.++.+.+|+.+.|.|.+.+  .|.+.|++++..+....+....         ...|.|..+...|.|.|.|.+.|..|
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI---------GEYLQIKGATPRDSGLYACTAARTVD   75 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE---------TTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe---------CCEEEECcCCcccCEEEEEEEccCCC
Confidence            456788999999999999987  5799999999888655443321         24799999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.+.
T Consensus        76 ~~~~~~~l~V~   86 (95)
T 4hwu_A           76 SETWIFMVNVT   86 (95)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cEEEEEEEEEe
Confidence            88877777653

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=4.1e-17  Score=77.51  Aligned_cols=81  Identities=21%  Similarity=0.433  Sum_probs=65.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ++..+.+..|+.+.|.|.+.+.| |.+.|++++..+....+....         ...|.|..+...|.|.|.|.+.|..|
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~g   78 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---------GEEVEVQDSVPADSGLYACVTSSPSG   78 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---------SSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---------CCEEEEccCCHHHCEEEEEEEEeCCc
Confidence            34567788999999999999876 799999999877554433221         34799999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.|.
T Consensus        79 ~~~~~~~l~V~   89 (99)
T 2cr3_A           79 SDTTYFSVNVS   89 (99)
T ss_dssp             EEEEEEEECBC
T ss_pred             eEEEEEEEEEe
Confidence            88777766653

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.9e-16  Score=75.40  Aligned_cols=82  Identities=21%  Similarity=0.196  Sum_probs=63.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..++.+.+|+.+.|.|.+  .|.|.+.|+++|..+....++.+..     ......|.|..+..+|.|.|.|.+.|.  
T Consensus        13 ~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~--   83 (100)
T 2yuz_A           13 PLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQ-----KGRIHKLVIANALTEDEGDYVFAPDAY--   83 (100)
T ss_dssp             CCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEE-----CSSEEEEEESSCCGGGCSEEEEEESSS--
T ss_pred             cCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEE-----eCCEEEEEECCCChhhCEEEEEEEcCC--
Confidence            3457889999999999999  7889999999999987665554421     112457999999999999999999998  


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .......|.|.
T Consensus        84 ~~~~~a~L~V~   94 (100)
T 2yuz_A           84 NVTLPAKVHVI   94 (100)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CeeEEEEEEEe
Confidence            34455555554

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=77.70  Aligned_cols=82  Identities=27%  Similarity=0.406  Sum_probs=66.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.++.+..|+.+.|.|.+.|.|.|.+.|++++..+... .+.....        ..+|.|..+...|.|.|.|.+.|..|
T Consensus        15 p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (118)
T 2eo9_A           15 PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE--------NGVLQIRYAKLGDTGRYTCIASTPSG   86 (118)
T ss_dssp             CCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE--------TTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred             CCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc--------CCEEEEccCCcCCCEEEEEEEEcCCC
Confidence            45678899999999999999999999999998877532 2222211        23799999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.+.
T Consensus        87 ~~~~~~~l~V~   97 (118)
T 2eo9_A           87 EATWSAYIEVQ   97 (118)
T ss_dssp             EEEEECCEEEE
T ss_pred             cEEEEEEEEEE
Confidence            98777766664

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.9e-17  Score=79.22  Aligned_cols=87  Identities=23%  Similarity=0.351  Sum_probs=68.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+..........    ......+|.|..+...|.|.|.|.+.|..|.
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   91 (110)
T 2dm3_A           16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV----RENGVHSLIIEPVTSRDAGIYTCIATNRAGQ   91 (110)
T ss_dssp             CCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE----CTTSCEEEEESSCCGGGCSBBCEEEECSSCE
T ss_pred             CCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE----ecCCeEEEEEeeCCcccCEEEEEEEECCCCE
Confidence            356788999999999999999999999999988776543322211    1111357999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.|..
T Consensus        92 ~~~~~~l~V~~  102 (110)
T 2dm3_A           92 NSFSLELVVAA  102 (110)
T ss_dssp             EEECCEEEEEC
T ss_pred             EEEEEEEEEeC
Confidence            88777777654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.69  E-value=5.5e-16  Score=73.34  Aligned_cols=80  Identities=23%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             ceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..+.+.+|+.+.|.|.+. +.|.+.+.|++++..........          ...+|.|..++.+|.|.|.|.+.|..|
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD----------FNGILTIRNVQPSDAGTYVCTGSNMFA   86 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE----------ETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeec----------CCCEEEEeCCChhhCEEEEEEecCCCC
Confidence            3566888999999999998 68999999999653332221111          134799999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.+.
T Consensus        87 ~~~~~~~l~V~   97 (98)
T 1gl4_B           87 MDQGTATLHVQ   97 (98)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ccccEEEEEEe
Confidence            98887777653

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.69  E-value=4.2e-16  Score=73.35  Aligned_cols=72  Identities=19%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +..++.+.+|+.+.|.|.+.+ +.|.+.|+++|..+....++.+..     .....+|.|..+..+|.|.|.|.+.|.
T Consensus        11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~-----~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEE-----ETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEE-----ECCEEEEEECCCChhhCEEEEEEECCC
Confidence            345788999999999999976 557899999999987665554321     111357999999999999999999774

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=1.3e-15  Score=75.17  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=66.0

Q ss_pred             ceeeEEEcCCeEEEEEEeccc---CCCeeEEEeCCE-Eccc--cceeeEEEEEe-cCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK---PRPHITWFKDGV-ELYT--HMYVNLHEWHY-GTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +.++.+.+|+.+.|.|.+.+.   |.|.|.|+++.. .+..  ...+.+..... ........|.|.++...|.|.|.|.
T Consensus        14 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Ce   93 (126)
T 2dav_A           14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   93 (126)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEE
Confidence            467889999999999999764   899999999641 1111  12222211110 1122357899999999999999999


Q ss_pred             EEcCCCceeEEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~~   94 (97)
                      +.|..|...+.+.|.|.+
T Consensus        94 vsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           94 VTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EECSSCEEEECCEEEEEC
T ss_pred             EEeCCCcEEEEEEEEEEe
Confidence            999999988888887765

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.68  E-value=9.4e-16  Score=81.36  Aligned_cols=78  Identities=22%  Similarity=0.312  Sum_probs=64.3

Q ss_pred             eEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           7 YEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..+.+|..+.|.|.+.|. |.|.+.|++++..+....+..       ......+|.|..+..+|.|.|+|.+.|..|...
T Consensus       126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  198 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD-------FKDGICTLLITEFSKKDAGIYEVILKDDRGKDK  198 (207)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC-------CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE-------cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEE
Confidence            567889999999999998 999999999999886543221       112245799999999999999999999999988


Q ss_pred             EEEEEE
Q psy9150          86 RTFKTD   91 (97)
Q Consensus        86 ~~~~~~   91 (97)
                      +...|.
T Consensus       199 ~~~~L~  204 (207)
T 3rbs_A          199 SRLKLV  204 (207)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            877654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.67  E-value=3.1e-15  Score=73.26  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             ceeeEEEcCCeEEEEEEecc--cCCCeeEEEeCCEEcccc---ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTH---MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ...+.+.+|+.+.|.|.+.|  .+.+.+.|++++..+...   .................+|.|..++..|.|.|.|.+.
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            34567889999999999988  445678999987643210   0000000000001125679999999999999999999


Q ss_pred             cCCCceeEEEEEEEEE
Q psy9150          79 NMYNVDTRTFKTDFSI   94 (97)
Q Consensus        79 ~~~g~~~~~~~~~~~~   94 (97)
                      |..|.....+.|.|..
T Consensus        95 n~~g~~~~~~~l~V~~  110 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHE  110 (122)
T ss_dssp             CSSCEEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEec
Confidence            9999988888777654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.66  E-value=8.9e-15  Score=77.15  Aligned_cols=85  Identities=21%  Similarity=0.314  Sum_probs=69.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++++..+...........    ......|.|..+...|.|.|.|.+.|..|..
T Consensus       125 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  200 (212)
T 2r15_A          125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE----AGRTAYFTINGVSTADSGKYGLVVKNKYGSE  200 (212)
T ss_dssp             SEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE----TTTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEc----CCCEEEEEEcCcchHHCeEEEEEEEcCCCcE
Confidence            356788999999999999999999999999998876554443211    1113589999999999999999999999998


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.+.
T Consensus       201 ~~~~~l~V~  209 (212)
T 2r15_A          201 TSDFTVSVF  209 (212)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888777664

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=8.5e-15  Score=71.39  Aligned_cols=79  Identities=16%  Similarity=0.362  Sum_probs=61.0

Q ss_pred             CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          13 HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      ....+.|.+.|.|.|.+.|+++|..+............ ........|.|..+...|.|.|.|.+.|..|.....+.+.+
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ-EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEec-cCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            45678899999999999999999988765533332111 11223568999999999999999999999999888776543

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=74.61  Aligned_cols=90  Identities=22%  Similarity=0.337  Sum_probs=65.3

Q ss_pred             ceeeEEEcCCeEEEEEEeccc---CCCeeEEEeCC-EEccc--cceeeEEEEEe-cCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK---PRPHITWFKDG-VELYT--HMYVNLHEWHY-GTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~-~~~~~--~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +.++.+.+|+.+.|.|.+.+.   |.|.|.|+++. ..+..  ...+.+..... ........|.|.++...|.|.|.|.
T Consensus        19 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Ce   98 (118)
T 2edn_A           19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLE   98 (118)
T ss_dssp             CCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEE
Confidence            467889999999999999764   78999999964 11111  11222211110 1112356899999999999999999


Q ss_pred             EEcCCCceeEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~   93 (97)
                      +.|..|...+.+.|.|.
T Consensus        99 vsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           99 VKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             EECSSCEEEEEECCEEE
T ss_pred             EEEcCCcEEEEEEEEEE
Confidence            99999998888887765

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.65  E-value=6.5e-16  Score=72.42  Aligned_cols=68  Identities=18%  Similarity=0.408  Sum_probs=53.7

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +.+..|+.+.|.|.+.+ |.|.+.|+++|..+....+..+...     ....+|.|..+..+|.|.|.|.+.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENE-----GPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEE-----TTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEec-----CCeEEEEeCCCChhhcEEEEEEEcce
Confidence            44568999999999866 8889999999999877665544321     11357999999999999999998654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=74.72  Aligned_cols=75  Identities=24%  Similarity=0.413  Sum_probs=59.3

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+....              ...|.|..+...|.|.|.|.+.|..+...
T Consensus        19 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~   84 (96)
T 2ens_A           19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP--------------SPVLILPEIGPQDQGTYSCVATHSSHGPQ   84 (96)
T ss_dssp             TSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC--------------CSEEEEESCCTTTCEEEECEECCSSCCCE
T ss_pred             CCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC--------------CCEEEECCCCcccCEEEEEEEEeCCCCcE
Confidence            4568899999999999999999999999987765432              24789999999999999999999766544


Q ss_pred             EEEEEEEEE
Q psy9150          86 RTFKTDFSI   94 (97)
Q Consensus        86 ~~~~~~~~~   94 (97)
                      ....+.+.+
T Consensus        85 ~s~~~~v~V   93 (96)
T 2ens_A           85 ESRAVSISI   93 (96)
T ss_dssp             ECCCEEEEE
T ss_pred             EEEEEEEEE
Confidence            444444443

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.65  E-value=7.5e-15  Score=69.11  Aligned_cols=79  Identities=15%  Similarity=0.271  Sum_probs=60.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+ +.|.+.+.|++++..+....++.+..     ......|.|..+...|.|.|.|.+    |.
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a----g~   84 (95)
T 2k1m_A           15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLAT-----EGTRHTLTVREVGPADQGSYAVIA----GS   84 (95)
T ss_dssp             CCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEE-----ETTEEEEEESSCCTTCCSEEEEEE----TT
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEE-----cCCEEEEEEcCCCcccCEEEEEEE----CC
Confidence            457789999999999999 77889999999998887555444321     111457999999999999999998    44


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.|
T Consensus        85 ~~~~~~l~V   93 (95)
T 2k1m_A           85 SKVKFDLKV   93 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            555555544

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.63  E-value=1.2e-14  Score=69.35  Aligned_cols=79  Identities=20%  Similarity=0.313  Sum_probs=59.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..++.+.+|+.+.|.|.+.+ +.+.+.|++++..+....  ++.+..     ......|.|..+...|.|.|.|.+.|  
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~n--   85 (103)
T 1x44_A           14 LEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV-----EGKKHILIIEGATKADAAEYSVMTTG--   85 (103)
T ss_dssp             CCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEE-----ETTEEEEEEEEECTTTCSEEEEEETT--
T ss_pred             CCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEE-----cCCEEEEEECCCCcccCEEEEEEECC--
Confidence            45678899999999999987 779999999999887654  223321     11135799999999999999999987  


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                        ......|.|
T Consensus        86 --~~~~~~l~V   94 (103)
T 1x44_A           86 --GQSSAKLSV   94 (103)
T ss_dssp             --EEEEEEEEE
T ss_pred             --CcEEEEEEE
Confidence              344444444

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.62  E-value=2.9e-14  Score=75.60  Aligned_cols=83  Identities=23%  Similarity=0.366  Sum_probs=66.5

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+..|+.+.|.|.+.|.|.|.+.|++++..+....  +.....     ......|.|..+...|.|.|.|.+.|..|
T Consensus        26 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  100 (215)
T 3mtr_A           26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN-----TPSASYLEVTPDSENDFGNYNCTAVNRIG  100 (215)
T ss_dssp             SEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEE-----ETTEEEEEECCCSGGGCEEEEEEEECSSC
T ss_pred             ceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEec-----CCCeeEEEEecCChhhCeEEEEEEEECCC
Confidence            35778899999999999999999999999999887543  222211     01146899999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .....+.+.+
T Consensus       101 ~~~~~~~l~v  110 (215)
T 3mtr_A          101 QESLEFILVQ  110 (215)
T ss_dssp             EEEEEEEEEE
T ss_pred             ceEEEEEEEE
Confidence            8877776655

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.62  E-value=5.8e-15  Score=84.19  Aligned_cols=80  Identities=25%  Similarity=0.509  Sum_probs=67.5

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+..|+.+.|.|.+.|.|.|.+.|+++|..+....+....         ..+|.|..+..+|.|.|.|.+.|..|..
T Consensus       303 ~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  373 (384)
T 3kld_A          303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---------QGTLNITIVNLSDAGMYQCVAENKHGVI  373 (384)
T ss_dssp             CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE---------TTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe---------CCEEEEeecChhhCEEEEEEEEeCCceE
Confidence            3567788999999999999999999999999988655444321         2379999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      .....|.|.
T Consensus       374 ~~~a~L~V~  382 (384)
T 3kld_A          374 FSSAELSVI  382 (384)
T ss_dssp             EEEEEEEEC
T ss_pred             EeceEEEEe
Confidence            888877764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.62  E-value=7.7e-15  Score=76.67  Aligned_cols=84  Identities=23%  Similarity=0.294  Sum_probs=67.7

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEcc-CCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP-ATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~c~~~~~~g~   83 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++++..+..........     ......|.|.. +...|.|.|.|.+.|..|.
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~  186 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV-----TRSFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEE-----CSSEEEEECTTCCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEE-----cCCceEEEEeCCCCcccCEeEEEEEEeCCCc
Confidence            45677889999999999999999999999998887554443321     11245789999 9999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus       187 ~~~~~~l~V~  196 (197)
T 2j8h_A          187 DQKTVELDVA  196 (197)
T ss_dssp             EEEEEEEEEE
T ss_pred             EeEEEEEEEe
Confidence            8888777664

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.62  E-value=4.8e-14  Score=69.34  Aligned_cols=87  Identities=15%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcc--------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY--------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ....+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.        ...++....    ......+|.|.+++.+|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~   82 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH----HSANQLSITVPNVTLQDEGVYK   82 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE----EETTEEEEEESSCCGGGCEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe----CCCCEEEEEECCCChHHCEEEE
Confidence            4567889999999999999999999999997554321        112222211    0111458999999999999999


Q ss_pred             EEEEcCCCceeEEEEEEEEE
Q psy9150          75 CYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        75 c~~~~~~g~~~~~~~~~~~~   94 (97)
                      |.+.|. |.......|.|..
T Consensus        83 C~a~n~-g~~~~~~~l~V~~  101 (124)
T 3rbg_A           83 CLHYSD-SVSTKEVKVIVLA  101 (124)
T ss_dssp             EEEESS-SEEEEEEEEEEEC
T ss_pred             EEEEcC-CCCcEEEEEEEEe
Confidence            999999 8777777776653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.62  E-value=2.4e-14  Score=68.75  Aligned_cols=88  Identities=14%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             eeeEEEcCCeEEEEEEeccc--CCCeeEEEeCCEEccccceeeEEEEEec---CceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGK--PRPHITWFKDGVELYTHMYVNLHEWHYG---TDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ....+..|+.+.|.|.+.+.  +.+.+.|++++..+..............   .......|.|..+...|.|.|.|.+.|
T Consensus        18 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   97 (112)
T 3so5_A           18 ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISN   97 (112)
T ss_dssp             CCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEe
Confidence            45678899999999999854  4678999999988765331111100000   001246899999999999999999999


Q ss_pred             CCCc-eeEEEEEEE
Q psy9150          80 MYNV-DTRTFKTDF   92 (97)
Q Consensus        80 ~~g~-~~~~~~~~~   92 (97)
                      ..|. ....+.|.|
T Consensus        98 ~~g~~~s~~~~l~V  111 (112)
T 3so5_A           98 HFGSSYSVXAXLTI  111 (112)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCcEEEeEEEEEe
Confidence            9987 446665554

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=2.8e-15  Score=71.85  Aligned_cols=75  Identities=21%  Similarity=0.268  Sum_probs=58.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+..|+.+.|.|.+.+.|.+ +.|++++..+....++.+..     ......|.|..+..+|.|.|.|.+.|....
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   88 (106)
T 2dlt_A           15 IADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDVRPEDEGDYTFVPDGYALS   88 (106)
T ss_dssp             CCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEE-----ETTEEEEEESSCCTTTCSCEEEEEETSCCC
T ss_pred             CCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEE-----eCCEEEEEECCCCcCCCEEEEEEEccCCce
Confidence            457789999999999999988877 99999998886655444321     111357999999999999999999998333


Q ss_pred             e
Q psy9150          84 D   84 (97)
Q Consensus        84 ~   84 (97)
                      .
T Consensus        89 ~   89 (106)
T 2dlt_A           89 L   89 (106)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.61  E-value=1.8e-14  Score=79.84  Aligned_cols=85  Identities=21%  Similarity=0.334  Sum_probs=68.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+.......+.    ........|.|..+...|.|.|.|.+.|..|..
T Consensus       230 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  305 (317)
T 2y25_A          230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLK----FEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE  305 (317)
T ss_dssp             SEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEEC----CBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE
T ss_pred             ccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEE----EcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE
Confidence            3567889999999999999999999999999888655443321    111224589999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       306 ~~~~~l~V~  314 (317)
T 2y25_A          306 TSDFTVSVF  314 (317)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888877765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.61  E-value=4.3e-14  Score=77.64  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+.+|+.+.|.|.+.+.|.|.+.|++++........................|.|..+...|.|.|.|.+.|..|...
T Consensus       190 ~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  269 (289)
T 3mjg_X          190 QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ  269 (289)
T ss_dssp             CSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEE
T ss_pred             cceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCce
Confidence            35678999999999999999999999987654332111111100000123457899999999999999999999999999


Q ss_pred             EEEEEEEEEee
Q psy9150          86 RTFKTDFSITF   96 (97)
Q Consensus        86 ~~~~~~~~~~~   96 (97)
                      ....|.+....
T Consensus       270 ~~~~l~v~~~~  280 (289)
T 3mjg_X          270 DEKAINITVVE  280 (289)
T ss_dssp             EEEEEEEEEEC
T ss_pred             eEEEEEEEEEe
Confidence            98888886643

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.61  E-value=8.7e-14  Score=72.49  Aligned_cols=86  Identities=24%  Similarity=0.391  Sum_probs=68.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.+.+.|.+.+.|++++..+..........     .....+|.|..+...|.|.|.|.+.|..+.
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   88 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTEEQEDEGVYTCIATNEVGE   88 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEE-----SSSEEEEEEECCSGGGCEEEEEEEECSSCE
T ss_pred             CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEe-----CCCEEEEEEecCCccCCEEEEEEEECCCCc
Confidence            346788999999999999999999999999998886555443321     112447999999999999999999999888


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ......+.+..
T Consensus        89 ~~~~~~l~v~~   99 (197)
T 3lcy_A           89 VETSSKLLLQA   99 (197)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eeEEEEEEEEc
Confidence            77776666543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.9e-14  Score=68.70  Aligned_cols=70  Identities=21%  Similarity=0.460  Sum_probs=56.9

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.+.+|+.+.|.|.+.+.+.+ +.|++++..+..........     ......|.|..+...|.|.|.|.+.|..+
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   89 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAKVQDSGEFECRTEGVSA   89 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEE-----ETTEEEEEESSCCTTTCEEEEEECSSCCC
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEe-----CCCEEEEEECCCChhhCEEEEEEECCceE
Confidence            788999999999999999988 99999999887654443321     11145799999999999999999988754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.60  E-value=6.6e-14  Score=66.96  Aligned_cols=85  Identities=16%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCE-Ecccc-------ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGV-ELYTH-------MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC   75 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c   75 (97)
                      +.++.+.+|+.+.|.|.+.+.+.+.+.|++++. .+...       .++....    ......+|.|.+++..|.|.|.|
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C   88 (108)
T 3m45_A           13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR----ASWHELSISVSDVSLSDEGQYTC   88 (108)
T ss_dssp             CCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEE----ESSSEEEEEECSCCGGGCEEEEE
T ss_pred             CCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEee----cCCCcEEEEECCCChhHCeEEEE
Confidence            457889999999999999999999999998764 22211       1222111    01125689999999999999999


Q ss_pred             EEEcCCCceeEEEEEEEE
Q psy9150          76 YADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        76 ~~~~~~g~~~~~~~~~~~   93 (97)
                      .+.| .+.......|.|.
T Consensus        89 ~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           89 SLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             EECS-SSCEEEEEEEEEE
T ss_pred             EEEc-CCCcEEEEEEEEE
Confidence            9999 7777777766654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.60  E-value=3.2e-14  Score=77.96  Aligned_cols=84  Identities=23%  Similarity=0.304  Sum_probs=68.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+...........     .....|.|..+...|.|.|.|.+.|..|..
T Consensus       200 ~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  274 (284)
T 2rik_A          200 HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSY  274 (284)
T ss_dssp             CCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEEcCCCcccCEEEEEEEEeCCCce
Confidence            356678899999999999999999999999998876554433211     113578999999999999999999999998


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       275 ~~~~~l~V~  283 (284)
T 2rik_A          275 TCVGSITLK  283 (284)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEEc
Confidence            888877653

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.60  E-value=1.3e-13  Score=71.85  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc---cceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT---HMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~   79 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|++  ++..+..   ..++...     .......|.|..+. ..|.|.|.|.+.|
T Consensus       101 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~~d~G~Y~C~a~N  175 (190)
T 2wv3_A          101 SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII-----NKENYTELNIVNLQITEDPGEYECNATN  175 (190)
T ss_dssp             EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEE-----ECSSEEEEEECSCCTTTSCEEEEEEEEC
T ss_pred             cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEe-----cCCCeeEEEEEeccccCCCEEEEEEEEe
Confidence            4568899999999999999999999999  7776642   2222221     11113479999999 7999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy9150          80 MYNVDTRTFKTDFS   93 (97)
Q Consensus        80 ~~g~~~~~~~~~~~   93 (97)
                      ..|.....+.|.|.
T Consensus       176 ~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          176 SIGSASVSTVLRVR  189 (190)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             cCCcceeEEEEEEE
Confidence            99998888877765

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.60  E-value=1.9e-14  Score=74.95  Aligned_cols=82  Identities=20%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+...........     ....+|.|..+...|.|.|.|.+.|..|...
T Consensus       112 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  186 (194)
T 2a38_A          112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-----GDLYSLLIAEAYPEDSGTYSVNATNSVGRAT  186 (194)
T ss_dssp             CEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEE-----TTEEEEEEEEECGGGCEEEEEEEEETTEEEE
T ss_pred             cEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEc-----CCEEEEEECCCChhcCeEEEEEEEeCCCceE
Confidence            45677899999999999999999999999998876554433211     1134789999999999999999999999888


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.|
T Consensus       187 ~~~~l~V  193 (194)
T 2a38_A          187 STAELLV  193 (194)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7776654

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=8.7e-15  Score=69.74  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=56.0

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..++.+..|+.+.|.|.+.+ +.+.+.|++++..+....++....     ......|.|..+...|.|.|.|.+.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           15 LEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVC-----EGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEE-----ETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEE-----CCCEEEEEECCCCcccCEEEEEEEcc
Confidence            34678889999999999987 888999999998886555444321     11145799999999999999999988

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.59  E-value=8.3e-15  Score=76.00  Aligned_cols=81  Identities=25%  Similarity=0.468  Sum_probs=65.5

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+.........    ..   ...|.|..+...|.|.|.|.+.|..|...
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~----~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  179 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GS---NTELTVRNIINSDGGPYVCRATNKAGEDE  179 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE----TT---TTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe----cC---CCEEEEcCCChhhCeeEEEEEEeCCCcee
Confidence            345567999999999999999999999999988755433321    11   24799999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.|.
T Consensus       180 ~~~~l~V~  187 (189)
T 2v5t_A          180 KQAFLQVF  187 (189)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88877765

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.59  E-value=1.7e-13  Score=72.47  Aligned_cols=86  Identities=30%  Similarity=0.456  Sum_probs=66.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g   82 (97)
                      +.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+.........    ........|.|..+. ..|.|.|.|.+.|..|
T Consensus        13 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g   88 (212)
T 2yd6_A           13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIE----FDDGSGSVLRIQPLRTPRDEAIYECVASNNVG   88 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEE----EGGGTEEEEEECSCCTTTTCEEEEEEEEETTE
T ss_pred             cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEE----EcCCCceEEEEeccCCCCCCeEEEEEEEcCCC
Confidence            34677899999999999999999999999999888654322211    111124579999994 9999999999999998


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.+.
T Consensus        89 ~~~~~~~l~V~   99 (212)
T 2yd6_A           89 EISVSTRLTVL   99 (212)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEEEe
Confidence            87776666653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.58  E-value=3e-14  Score=80.88  Aligned_cols=80  Identities=25%  Similarity=0.532  Sum_probs=67.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+....+....         ...|.|..+..+|.|.|.|.+.|..|..
T Consensus       302 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  372 (382)
T 1cs6_A          302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---------GGELRFSKLVLEDSGMYQCVAENKHGTV  372 (382)
T ss_dssp             CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---------TTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE---------CCEEEECcCCcccCEEEEEEEEeCCCeE
Confidence            3456788999999999999999999999999988765443321         2479999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       373 ~~~~~l~V~  381 (382)
T 1cs6_A          373 YASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            888877764

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.58  E-value=3.3e-14  Score=67.45  Aligned_cols=77  Identities=16%  Similarity=0.273  Sum_probs=58.4

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +.+..|+.+.|.|.+. .|.|.+.|++++..+....++.+..     ......|.|..+..+|.|.|.|.+    |....
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~   87 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNCQMTDDSEYYVTA----GDEKC   87 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEE-----ETTEEEEEEEEECTTTCCEEEEEE----TTEEE
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEe-----cCCEEEEEEcCCCcCcCEEEEEEE----CCceE
Confidence            5678999999999998 6899999999998886554444321     111347999999999999999998    55555


Q ss_pred             EEEEEEE
Q psy9150          87 TFKTDFS   93 (97)
Q Consensus        87 ~~~~~~~   93 (97)
                      ...|.+.
T Consensus        88 ~~~l~V~   94 (100)
T 2yuv_A           88 STELFVR   94 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            5555543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.58  E-value=4.5e-15  Score=72.22  Aligned_cols=87  Identities=22%  Similarity=0.345  Sum_probs=58.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce---eeEEEEEecCc-eEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY---VNLHEWHYGTD-RIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....   ....  ..... .....+.+..+...|.|.|.|.+.|
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N   93 (117)
T 2v9t_A           16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM--LLPSGSLFFLRIVHGRKSRPDEGVYVCVARN   93 (117)
T ss_dssp             CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEE--ECTTSCEEESSCCCBTTBCSSCEEEEEEEEE
T ss_pred             CCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeE--EecCCcEEEEEEEeCCCCcCcCEEEEEEEEe
Confidence            3466788999999999999999999999999988764321   0000  00111 0011122235578999999999999


Q ss_pred             CCCceeE-EEEEEE
Q psy9150          80 MYNVDTR-TFKTDF   92 (97)
Q Consensus        80 ~~g~~~~-~~~~~~   92 (97)
                      ..|.... .+.+.+
T Consensus        94 ~~G~~~s~~~~l~~  107 (117)
T 2v9t_A           94 YLGEAVSHDASLEV  107 (117)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CccceEeeeEEEEh
Confidence            9998643 444444

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.58  E-value=7.7e-14  Score=72.70  Aligned_cols=84  Identities=17%  Similarity=0.343  Sum_probs=67.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCC-CCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ-MDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~c~~~~~~g~   83 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++++..+..........     ......|.|..+.. +|.|.|.|.+.|..|.
T Consensus       111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  185 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN-----TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT  185 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE-----CSSEEEEEESSCCHHHHCEEEEEEEECSSCE
T ss_pred             cceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE-----cCCEEEEEEccccchhhCceEEEEEEcCcCc
Confidence            45567889999999999999999999999999887655443321     11135799999985 8999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.+.
T Consensus       186 ~~~~~~l~V~  195 (197)
T 3lcy_A          186 VDAILDVEIQ  195 (197)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEEe
Confidence            8888777664

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.58  E-value=2e-14  Score=68.51  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=59.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.+.+.|.| +.|++++..+....++....     ......|.|.++...|.|.|.|.    .|.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~----~g~   84 (103)
T 2e7b_A           15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSGRYSCS----FGD   84 (103)
T ss_dssp             CCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEE-----CSSEEEEEECSCCTTTCCCEEEE----CSS
T ss_pred             CccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEE-----cCCEEEEEEccCCcccCEEEEEE----ECC
Confidence            457889999999999999999988 99999998876554444321     12245799999999999999998    344


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ......|.|.
T Consensus        85 ~~~~~~l~V~   94 (103)
T 2e7b_A           85 QTTSATLTVT   94 (103)
T ss_dssp             CBCCBCEEEE
T ss_pred             cEEEEEEEEE
Confidence            4444444443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.58  E-value=2.4e-14  Score=79.55  Aligned_cols=76  Identities=14%  Similarity=0.232  Sum_probs=61.9

Q ss_pred             EEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           8 EYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      .+..|+.+.|.|.+.|.|.| .+.|++++..+.......           ..+|.|..+...|.|.|.|.+.|..|....
T Consensus       228 ~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  296 (313)
T 4fqp_A          228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-----------GAQLLIRPVDKPINTTLICNVTNALGARQA  296 (313)
T ss_dssp             EETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEE-----------TTEEEECCCSSCCEEEEEEEEECSSCEEEE
T ss_pred             eecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEe-----------CCEEEECcCChhhCEEEEEEEEeCCCcEEE
Confidence            45567889999999999999 599999998775432111           247999999999999999999999999888


Q ss_pred             EEEEEEEE
Q psy9150          87 TFKTDFSI   94 (97)
Q Consensus        87 ~~~~~~~~   94 (97)
                      .+.|.|..
T Consensus       297 ~~~l~V~~  304 (313)
T 4fqp_A          297 ELTVQVKE  304 (313)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            88777653

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.7e-15  Score=71.76  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.+.+.|.|.+.|++++..+....+..+.    ........|.|..+...|.|.|.|.+    |.
T Consensus        20 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~   91 (115)
T 2cr6_A           20 LEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEID----AQPGGYHVLTLRQLALKDSGTIYFEA----GD   91 (115)
T ss_dssp             CCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBC----CBTTTBCCBEECSCCTTTCEEEEEEE----TT
T ss_pred             CccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEE----EcCCCEEEEEEcCCChhhCEEEEEEE----CC
Confidence            35778999999999999999999999999999888655433221    01111346999999999999999983    44


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ......|.+.
T Consensus        92 ~~~~~~L~V~  101 (115)
T 2cr6_A           92 QRASAALRVT  101 (115)
T ss_dssp             EECCEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            4444555543

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-13  Score=66.17  Aligned_cols=77  Identities=21%  Similarity=0.404  Sum_probs=58.1

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+.+..|+.+.|.|.+. .|.+.+.|++++..+....+.....     ......|.|..+..+|.|.|.|.+.|    ..
T Consensus        22 ~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~   91 (113)
T 2cpc_A           22 YVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSGEYLCEIDD----ES   91 (113)
T ss_dssp             EEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEE-----CSSEEEEEESSCCTTTCEEEEEESSS----CE
T ss_pred             eEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEE-----CCCEEEEEECCCCcccCEEEEEEEec----Cc
Confidence            36788999999999995 7889999999999887654443321     11135899999999999999999988    33


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.+
T Consensus        92 ~~~~l~V   98 (113)
T 2cpc_A           92 ASFTVTV   98 (113)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4444444

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=4.6e-14  Score=67.55  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=54.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..+.+..|+.+.|.|.+ +.|.+.+.|+++|..+... .++....     ......|.|..+..+|.|.|.|.+.+
T Consensus        24 ~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           24 PAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES-----IGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             SEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEE-----ETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEe-----cCCEEEEEECCCCcccCEEEEEEECC
Confidence            34789999999999999 6888999999999888765 3333321     11144899999999999999999843

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=68.88  Aligned_cols=81  Identities=15%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..++.+.+|+.+.|.|.+.+.+. +.+.|+++|..+....++.....     ....+|.|.++..+|.|.|.|.+.|   
T Consensus        15 ~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~~---   86 (104)
T 2eny_A           15 LKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ-----GRKYILVVREAAPSDAGEVVFSVRG---   86 (104)
T ss_dssp             CCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEE-----TTEEEEEECSCCTTTCSCEEEEETT---
T ss_pred             CCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEc-----CCEEEEEECCCCHHHCEEEEEEECC---
Confidence            45788999999999999988774 47999999988876555443211     1145799999999999999998754   


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                       ......|.|.
T Consensus        87 -~~~~a~L~V~   96 (104)
T 2eny_A           87 -LTSKASLIVR   96 (104)
T ss_dssp             -EEEEECEEEE
T ss_pred             -eeEEEEEEEe
Confidence             3444444443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.57  E-value=4.8e-13  Score=69.84  Aligned_cols=87  Identities=18%  Similarity=0.360  Sum_probs=67.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .......    ......|.|..+...|.|.|.|.+.|..|
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   86 (197)
T 2j8h_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF----KGGYHQLIIASVTDDDATVYQVRATNQGG   86 (197)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE----TTTEEEEEECSCCGGGCSEEEEEEEETTE
T ss_pred             CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc----CCCEEEEEECcCCHHhCEEEEEEEEECCC
Confidence            356788999999999999999999999999998876432 2222110    11134899999999999999999999988


Q ss_pred             ceeEEEEEEEEE
Q psy9150          83 VDTRTFKTDFSI   94 (97)
Q Consensus        83 ~~~~~~~~~~~~   94 (97)
                      .....+.|.+..
T Consensus        87 ~~~~~~~l~V~~   98 (197)
T 2j8h_A           87 SVSGTASLEVEV   98 (197)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             ceeEEEEEEEcC
Confidence            877777666643

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=74.84  Aligned_cols=79  Identities=25%  Similarity=0.426  Sum_probs=64.3

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+........     .    ...|.|..+...|.|.|.|.+.|..|...
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~-----~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  192 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST-----S----GAVLKIFNIQLEDEGIYECEAENIRGKDK  192 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEET-----T----TTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecC-----C----CCEEEEccCChhhCEEEEEEEEecCCcee
Confidence            45678899999999999999999999999987654322111     1    34799999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.|.
T Consensus       193 ~~~~l~V~  200 (201)
T 3s97_C          193 HQARIYVQ  200 (201)
T ss_dssp             EEEEEEEE
T ss_pred             eeEEEEEe
Confidence            88777664

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.56  E-value=3.3e-13  Score=71.38  Aligned_cols=86  Identities=26%  Similarity=0.361  Sum_probs=65.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcc-ccceeeEEEEEecCceEEEEEEEccCCC-CCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY-THMYVNLHEWHYGTDRIKSKIEIDPATQ-MDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~c~~~~~~   81 (97)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+......  .  .....|.|..+.. .|.|.|.|.+.|..
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--~--~~~~~L~i~~v~~~~d~G~Y~C~~~n~~   88 (212)
T 2yd1_A           13 PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ--P--GGISILRIEPVRAGRDDAPYECVAENGV   88 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEE--T--TTEEEEEESSCCTTTTCSEEEEEEECSS
T ss_pred             CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEc--C--CCeEEEEEEecCCCCcCceEEEEEEeCC
Confidence            356778999999999999999999999999998886 2233332211  1  1135899999999 99999999999998


Q ss_pred             Cc-eeEEEEEEEE
Q psy9150          82 NV-DTRTFKTDFS   93 (97)
Q Consensus        82 g~-~~~~~~~~~~   93 (97)
                      |. ....+.|.+.
T Consensus        89 g~~~~~~~~l~V~  101 (212)
T 2yd1_A           89 GDAVSADATLTIY  101 (212)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CCeEEeeEEEEEe
Confidence            88 5666666553

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.56  E-value=4.1e-14  Score=70.60  Aligned_cols=79  Identities=28%  Similarity=0.446  Sum_probs=58.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc----------ceeeEEEEEecCceEEEEEEEccCCCCCCEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH----------MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   73 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...          ........  .......+|.|..+...|.|.|
T Consensus        28 p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y  105 (137)
T 3qr2_A           28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT--YHQHAASTISIDTLVEEDTGTY  105 (137)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEE--ESSSEEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecc--cccccceEEEECCCCcccCEEE
Confidence            45678889999999999999999999999976654321          11111110  1112356899999999999999


Q ss_pred             EEEEEcCCCce
Q psy9150          74 ECYADNMYNVD   84 (97)
Q Consensus        74 ~c~~~~~~g~~   84 (97)
                      .|.+.|..|..
T Consensus       106 ~C~a~N~~G~~  116 (137)
T 3qr2_A          106 ECRASNDPDRN  116 (137)
T ss_dssp             EEEEECCTTSS
T ss_pred             EEEEEecCCcc
Confidence            99999998875

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=8.7e-14  Score=66.23  Aligned_cols=80  Identities=16%  Similarity=0.250  Sum_probs=60.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.. +.|.|.+.|++++..+....++.+..     ......|.|..+...|.|.|.|.    .|.
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~----~g~   84 (103)
T 2dku_A           15 LTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSDTYTCD----IGQ   84 (103)
T ss_dssp             CCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEE-----ETTEEEEEEESCCTTTCSEEEEE----CSS
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEe-----CCCEEEEEECCCCcccCEEEEEE----eCC
Confidence            457789999999999994 88899999999998887655444321     11134799999999999999997    555


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ......|.|.
T Consensus        85 ~~~~~~l~V~   94 (103)
T 2dku_A           85 AQSRAQLLVQ   94 (103)
T ss_dssp             CBCCEEEEEE
T ss_pred             ceEEEEEEEe
Confidence            5555555554

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.56  E-value=6.2e-14  Score=83.83  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=71.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+.+|+.+.+.|.+.|.|.|.+.|++++..+....++.+...   .  ...+|.|..+.+.|.|.|+|.+.|..|..
T Consensus       490 ~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~---~--~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~  564 (573)
T 3uto_A          490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN---G--NDYGLTINRVKGDDKGEYTVRAKNSYGTK  564 (573)
T ss_dssp             CCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEE---T--TEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEc---C--CEEEEEEcCCCcccCcEEEEEEEeCCCcE
Confidence            466788999999999999999999999999999987666655321   1  24579999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|+
T Consensus       565 ~~~v~l~Vt  573 (573)
T 3uto_A          565 EEIVFLNVT  573 (573)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            998888764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-13  Score=66.73  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=59.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.+|+.+.|.|.+.+.  |.+.|++++..+....++.+...     .....|.|..+..+|.|.|.|.+    +..
T Consensus        27 ~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a----~~~   95 (113)
T 2edh_A           27 RNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQD-----GARCELQIRGLVAEDAGEYLCMC----GKE   95 (113)
T ss_dssp             CCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEE-----TTEEEEEECSCCSTTCEEEEEEE----TTE
T ss_pred             CceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEEC-----CCEEEEEECCCChhhCEEEEEEe----CCC
Confidence            46678899999999999774  78999999988876555444311     11457999999999999999998    556


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      .....|.+.
T Consensus        96 ~~~~~l~V~  104 (113)
T 2edh_A           96 RTSAMLTVR  104 (113)
T ss_dssp             EEEEEEEEC
T ss_pred             CEEEEEEEe
Confidence            666665554

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.55  E-value=7.8e-16  Score=75.49  Aligned_cols=86  Identities=21%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCCC-EEEEEEEEcCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDA-GIYECYADNMY   81 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~c~~~~~~   81 (97)
                      .+.+.+|+.+.|.|.+.|.|.|. +.|++++..+...  .++..... .........|.|..+...|. |.|.|.+.|..
T Consensus        22 ~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~  100 (122)
T 2cry_A           22 TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI-STEEGVISTLTISNIVRADFQTIYNCTAWNSF  100 (122)
T ss_dssp             CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEE-EETTEEEEEEECTTCCHHHHHSCEEEEEECSS
T ss_pred             eEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEe-cCCCceEEEEEEcCCChhhCCceEEEEEECCC
Confidence            44567899999999999999987 9999998877642  22222111 11222356899999999998 99999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.|.+
T Consensus       101 G~~~~~~~l~V  111 (122)
T 2cry_A          101 GSDTEIIRLKE  111 (122)
T ss_dssp             CEEEEEECCCC
T ss_pred             CeEEEEEEEEE
Confidence            99887776554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.55  E-value=9.2e-14  Score=76.88  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=64.3

Q ss_pred             eEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++..+....+....       .....|.|..+...|.|.|.|.+.|..|...
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  303 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDK  303 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-----------CEEEEEECSCSGGGCEEEEEEEESTTCCEE
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE-------CCEEEEEECcCCHHHCEEEEEEEEcCCCcee
Confidence            578899999999999999988 99999999888644333221       1145899999999999999999999999998


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.+
T Consensus       304 ~~~~l~i  310 (312)
T 2y23_A          304 SRLKLVD  310 (312)
T ss_dssp             EEEEECS
T ss_pred             eeeEEEe
Confidence            8877654

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=4.4e-13  Score=64.94  Aligned_cols=80  Identities=15%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc----------eeeEEEEEecCceEEEEEEEccCCCCCCEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM----------YVNLHEWHYGTDRIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   73 (97)
                      ..++.+.+|+.+.|.|.+.+  .|.+.|+++|..+....          ++.+     ..+....+|.|..+..+|.|.|
T Consensus        15 l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i-----~~~g~~~~L~I~~v~~~D~G~Y   87 (112)
T 2e6q_A           15 LEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI-----EQKGLQHRLILHAVKHQDSGAL   87 (112)
T ss_dssp             CCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEE-----CCBTTEEEEEEESCCSTTCSEE
T ss_pred             CCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEE-----EeCCcEEEEEECCCCHHHCccE
Confidence            46789999999999999987  78899999999997664          4433     2222245799999999999999


Q ss_pred             EEEEEcCCCceeEEEEEEEE
Q psy9150          74 ECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        74 ~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .|...+   .......|.|.
T Consensus        88 ~~~~~~---~~~ssA~L~V~  104 (112)
T 2e6q_A           88 VGFSCP---GVQDSAALTIQ  104 (112)
T ss_dssp             EEEEET---TEEEEEEEEEE
T ss_pred             EEEEEC---CeeEEEEEEEe
Confidence            875543   23344455543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.54  E-value=2.6e-13  Score=70.62  Aligned_cols=85  Identities=24%  Similarity=0.301  Sum_probs=65.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ......   .  .....|.|..+...|.|.|.|.+.|..
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~   86 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF---S--DGRAKLTIPAVTKANSGRYSLKATNGS   86 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEE---E--TTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEe---C--CCEEEEEECCCCcccCEEEEEEEEcCC
Confidence            356788999999999999999999999999988776442  222211   1  114579999999999999999999998


Q ss_pred             CceeEEEEEEEE
Q psy9150          82 NVDTRTFKTDFS   93 (97)
Q Consensus        82 g~~~~~~~~~~~   93 (97)
                      |.......+.+.
T Consensus        87 ~~~~~~~~l~v~   98 (194)
T 2a38_A           87 GQATSTAELLVK   98 (194)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             ceEeEEEEEEEc
Confidence            887766666554

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.54  E-value=2.5e-13  Score=75.37  Aligned_cols=87  Identities=17%  Similarity=0.271  Sum_probs=66.8

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEE-EecC------ceEEEEEEEccCCCCC-CEEEEEEEE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEW-HYGT------DRIKSKIEIDPATQMD-AGIYECYAD   78 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~l~i~~~~~~~-~g~y~c~~~   78 (97)
                      +.+..|+.+.|.|.+.|.|.|.+.|+++|..+........... ....      ......|.|..+...| .|.|.|.+.
T Consensus       219 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~  298 (315)
T 1itb_B          219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK  298 (315)
T ss_dssp             EECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEE
T ss_pred             EEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEe
Confidence            5678899999999999999999999999998875432111100 0000      1234589999999999 999999999


Q ss_pred             cCCCceeEEEEEEEE
Q psy9150          79 NMYNVDTRTFKTDFS   93 (97)
Q Consensus        79 ~~~g~~~~~~~~~~~   93 (97)
                      |..|.....+.|.+.
T Consensus       299 N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          299 NTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CTTCCEEEEEEEECC
T ss_pred             cCCCceeEEEEEEec
Confidence            999999888877653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.54  E-value=1.6e-13  Score=77.98  Aligned_cols=85  Identities=20%  Similarity=0.377  Sum_probs=66.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcccc-----ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELYTH-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|+++  +..+...     .+....     .......|.|..+...|.|.|.|.+
T Consensus         8 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a   82 (389)
T 2jll_A            8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK-----GQHGSSSLHIKDVKLSDSGRYDCEA   82 (389)
T ss_dssp             CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEE-----ECSSEEEEEEESCCGGGCEEEEEEE
T ss_pred             CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEe-----ccCCcceEEEcccChhhCEEEEEEE
Confidence            456788899999999999999999999998  8877542     222221     1112468999999999999999999


Q ss_pred             EcCCCceeEEEEEEEEE
Q psy9150          78 DNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        78 ~~~~g~~~~~~~~~~~~   94 (97)
                      .|..|.....+.|.|..
T Consensus        83 ~n~~g~~~~~~~l~V~~   99 (389)
T 2jll_A           83 ASRIGGHQKSMYLDIEY   99 (389)
T ss_dssp             ECSSCEEEEEEEEEEEE
T ss_pred             EeCCCCcceEEEEEEEe
Confidence            99999887777776643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.54  E-value=2.8e-13  Score=74.19  Aligned_cols=85  Identities=25%  Similarity=0.372  Sum_probs=67.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+..........   .  .....|.|..+...|.|.|.|.+.|..|.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~---~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~   86 (284)
T 2rik_A           12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL---V--ENTATLTVLKVTKGDAGQYTCYASNVAGK   86 (284)
T ss_dssp             CCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEE---E--TTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEE---c--CCEEEEEEecCCcccCEEEEEEEEECCce
Confidence            356778999999999999999999999999999887654433321   1  11467999999999999999999999888


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.+.
T Consensus        87 ~~~~~~l~V~   96 (284)
T 2rik_A           87 DSCSAQLGVQ   96 (284)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEcc
Confidence            7776666553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.54  E-value=6.4e-13  Score=68.64  Aligned_cols=87  Identities=16%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+..........   ........|.|..+...|.|.|.|.+.+..+
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   84 (182)
T 1rhf_A            8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV---SEQHWIGFLSLKSVERSDAGRYWCQVEDGGE   84 (182)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEE---ETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEe---cCCCceEEEEEeecCcccCeEEEEEEEcCCC
Confidence            4567889999999999999999999999999998887654333221   2223356899999999999999999999866


Q ss_pred             c-eeEEEEEEE
Q psy9150          83 V-DTRTFKTDF   92 (97)
Q Consensus        83 ~-~~~~~~~~~   92 (97)
                      . ....+.|.+
T Consensus        85 ~~~~~~~~l~V   95 (182)
T 1rhf_A           85 TEISQPVWLTV   95 (182)
T ss_dssp             CEECCCEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            5 334454444

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.54  E-value=1.9e-13  Score=77.70  Aligned_cols=73  Identities=23%  Similarity=0.504  Sum_probs=63.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.|.|.|.+.|+++|..+...               ...|.|..+...|.|.|.|.+.|..|..
T Consensus       315 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~---------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  379 (388)
T 2v5m_A          315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESVKKEDKGMYQCFVRNDRESA  379 (388)
T ss_dssp             SEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC---------------SSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC---------------CCEEEEecCChhhCEEEEEEEEcCCCcE
Confidence            3556788999999999999999999999999887532               2379999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.|.|
T Consensus       380 ~~~~~l~V  387 (388)
T 2v5m_A          380 EASAELKL  387 (388)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            88877664

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.54  E-value=2.7e-13  Score=71.74  Aligned_cols=83  Identities=24%  Similarity=0.365  Sum_probs=61.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc---eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM---YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+....   +.....     ......|.|..+...|.|.|.|.+.|..|
T Consensus       117 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  191 (212)
T 2yd6_A          117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR-----SESIGALQIEQSEESDQGKYECVATNSAG  191 (212)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE-----ETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe-----cCCeEEEEEcCCCcccCEEEEEEEECCCC
Confidence            4567789999999999999999999999998886532   111110     01146899999999999999999999999


Q ss_pred             cee-EEEEEEEE
Q psy9150          83 VDT-RTFKTDFS   93 (97)
Q Consensus        83 ~~~-~~~~~~~~   93 (97)
                      ... ....|.+.
T Consensus       192 ~~~s~~a~l~~~  203 (212)
T 2yd6_A          192 TRYSAPANLYVR  203 (212)
T ss_dssp             EEECCCEEEEEE
T ss_pred             ccccccccEEEE
Confidence            864 34444443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.54  E-value=5.5e-14  Score=77.20  Aligned_cols=83  Identities=22%  Similarity=0.394  Sum_probs=64.3

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.....  ....   ...  ....|.|..+...|.|.|.|.+.|..|.
T Consensus       205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~---~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  279 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI---FSD--DSSELTIRNVDKNDEAEYVCIAENKAGE  279 (291)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEE---ECT--TSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceE---EcC--CCcEEEEEecChhcCEEEEEEEEeCCCc
Confidence            44566799999999999999999999999998865431  0110   011  1347999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus       280 ~~~~~~l~V~  289 (291)
T 1qz1_A          280 QDASIHLKVF  289 (291)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEEE
Confidence            8888777664

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.5e-13  Score=65.26  Aligned_cols=69  Identities=23%  Similarity=0.446  Sum_probs=54.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .++.+.+|+.+.|.|.+. .|.+.+.|++++..+....+..+..     ......|.|..+...|.|.|.|.+.+
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEE-----ETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEE-----cCCEEEEEECCCCcccCEEEEEEcCC
Confidence            466889999999999998 7889999999999887655443321     11135799999999999999998854

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.53  E-value=2.8e-14  Score=78.37  Aligned_cols=82  Identities=23%  Similarity=0.430  Sum_probs=65.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.........     .  ....|.|..+...|.|.|.|.+.|..|...
T Consensus       203 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~-----~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  275 (291)
T 2wim_A          203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK-----G--SNTELTVRNIINSDGGPYVCRATNKAGEDE  275 (291)
T ss_dssp             ECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC-----S--TTCEEEEESCCSTTCEEEEEEEEETTEEEE
T ss_pred             cceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc-----C--CccEEEEeeCCcccCEEEEEEEEECCCcee
Confidence            345567999999999999999999999999988755433221     1  134799999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy9150          86 RTFKTDFSI   94 (97)
Q Consensus        86 ~~~~~~~~~   94 (97)
                      ..+.|.+..
T Consensus       276 ~~~~l~v~~  284 (291)
T 2wim_A          276 KQAFLQVFV  284 (291)
T ss_dssp             EEEEEEC--
T ss_pred             eeEEEEEEE
Confidence            888877654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=9e-15  Score=69.52  Aligned_cols=70  Identities=19%  Similarity=0.338  Sum_probs=55.4

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc----eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM----YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..++.+.+|+.+.|.|.+.+.| +.+.|++++..+....    ++.+.     .......|.|..+..+|.|.|.|.+.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           15 LEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFK-----KDGKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             CCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEE-----ECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             CCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEE-----ECCCEEEEEECCCChhhCEEEEEEEcC
Confidence            3467889999999999999988 9999999998876544    22322     111245799999999999999999887

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.53  E-value=5e-13  Score=69.76  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecC--ceE--EEEEEEccCCCCCCEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGT--DRI--KSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      .+.++.+.+|+.+.|.|.+. +.|.+.+.|++++..+...............  ...  ...|.|..+...|.|.|.|.+
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   87 (195)
T 2c5d_C            8 NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV   87 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEE
T ss_pred             ChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEE
Confidence            34677889999999999998 8999999999999988755321111101011  111  468999999999999999999


Q ss_pred             EcCCCce
Q psy9150          78 DNMYNVD   84 (97)
Q Consensus        78 ~~~~g~~   84 (97)
                      .+..+..
T Consensus        88 ~~~~~~~   94 (195)
T 2c5d_C           88 FLGHQTF   94 (195)
T ss_dssp             EETTEEE
T ss_pred             EeCCCce
Confidence            9987754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.53  E-value=2.4e-13  Score=80.98  Aligned_cols=83  Identities=24%  Similarity=0.338  Sum_probs=66.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...........     ....+|.|..+...|.|.|.|.+.|..|..
T Consensus       392 ~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  466 (570)
T 3b43_A          392 HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSD  466 (570)
T ss_dssp             CCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEECCCChhhCEEEEEEEEECCCeE
Confidence            456778899999999999999999999999998876554433211     113479999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      .....|.+
T Consensus       467 ~~~~~l~v  474 (570)
T 3b43_A          467 TCVGSITL  474 (570)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            87766654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.53  E-value=1.5e-13  Score=72.68  Aligned_cols=79  Identities=24%  Similarity=0.480  Sum_probs=62.9

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+.... .....         ...|.|..+...|.|.|.|.+.|..|..
T Consensus       119 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  189 (212)
T 2yd1_A          119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK---------DGFLQIENSREEDQGKYECVAENSMGTE  189 (212)
T ss_dssp             CEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE---------TTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc---------CCeEEEccCChhhCEEEEEEeecCCCce
Confidence            4567789999999999999999999999998876532 22111         2379999999999999999999999987


Q ss_pred             eEE-EEEEEE
Q psy9150          85 TRT-FKTDFS   93 (97)
Q Consensus        85 ~~~-~~~~~~   93 (97)
                      ... +.|.|.
T Consensus       190 ~s~~~~l~V~  199 (212)
T 2yd1_A          190 HSKATNLYVK  199 (212)
T ss_dssp             ECCCEEEEEE
T ss_pred             eEEEEEEEEE
Confidence            653 566554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.52  E-value=1.4e-14  Score=76.70  Aligned_cols=82  Identities=12%  Similarity=0.022  Sum_probs=53.5

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+......... .....+.....+.+..++.+|.|.|+|.+.|..|.+.
T Consensus       115 ~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r-~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          115 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG-VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             ECCSSCSCCEEEEEEEEEESCCEEEECCC------------C-CEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             eEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce-EEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            445667999999999999999999999866544321110000 0111222234566678899999999999999999987


Q ss_pred             EEE
Q psy9150          86 RTF   88 (97)
Q Consensus        86 ~~~   88 (97)
                      ..+
T Consensus       194 ~v~  196 (203)
T 4fa8_A          194 GVY  196 (203)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.52  E-value=2.2e-13  Score=77.56  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=64.3

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+... +....         ...|.|..+...|.|.|.|.+.|..|....
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~---------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  388 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT---------DSGLVIKGVKNGDKGYYGCRATNEHGDKYF  388 (395)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE---------TTEEEESSCCSTTCEEEEEEEEETTEEEEE
T ss_pred             eEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE---------CCEEEEeeCCcccCEEEEEEEEccCCCceE
Confidence            67788999999999999999999999999988653 22221         237999999999999999999999999888


Q ss_pred             EEEEEE
Q psy9150          87 TFKTDF   92 (97)
Q Consensus        87 ~~~~~~   92 (97)
                      .+.|.|
T Consensus       389 ~~~l~V  394 (395)
T 1bih_A          389 ETLVQV  394 (395)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877765

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.52  E-value=1.6e-13  Score=81.74  Aligned_cols=84  Identities=20%  Similarity=0.356  Sum_probs=66.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+..|+.+.|.|.+.|.|.|.+.|++++..+.......+.     ......+|.|..+..+|.|.|.|.+.|..|.
T Consensus        12 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (570)
T 3b43_A           12 LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQ-----FKNNVASLVINKVDHSDVGEYTCKAENSVGA   86 (570)
T ss_dssp             CCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEE-----CCTTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEE-----EECCEEEEEEccCChhhCEEEEEEEEeCCce
Confidence            45678889999999999999999999999999887655443321     1111457999999999999999999999998


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......+.+
T Consensus        87 ~~~~~~l~v   95 (570)
T 3b43_A           87 VASSAVLVI   95 (570)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            766555443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.52  E-value=6.4e-14  Score=73.76  Aligned_cols=84  Identities=15%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ..+..+..+.+.|.+.+.|.|.+.|++++..+........    .......+.|.|..+...|.|.|+|.+.|..|....
T Consensus       128 ~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~----~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~  203 (218)
T 4frw_A          128 LEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKH----SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQ  203 (218)
T ss_dssp             EETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEEC----SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE
T ss_pred             eeeeeccccceeeeccCCcCceEEEEECCcccccCceEec----CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEE
Confidence            3445678899999999999999999998876653222110    011223557999999999999999999999998776


Q ss_pred             EEEEEEEE
Q psy9150          87 TFKTDFSI   94 (97)
Q Consensus        87 ~~~~~~~~   94 (97)
                      .+.+.+.+
T Consensus       204 ~~t~~v~V  211 (218)
T 4frw_A          204 RITHILHV  211 (218)
T ss_dssp             EEEEECCE
T ss_pred             EEEEEEEE
Confidence            66665543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.52  E-value=8e-13  Score=70.11  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=62.4

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeCCEEccccceeeEEEEEecC----ceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKDGVELYTHMYVNLHEWHYGT----DRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .+.+.+|+.+.|.|.+.+.|  .+.+.|++++..+......... .....    .....+|.|..++.+|.|.|.|.+.|
T Consensus       114 ~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (213)
T 2x1w_L          114 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD-LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS  192 (213)
T ss_dssp             CEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEE-ECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccc-cccccCccceeeeEEEEECCCCcccCEEEEEEEec
Confidence            34788999999999998855  4579999988764322110000 00001    22356899999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy9150          80 MYNVDTRTFKTDFS   93 (97)
Q Consensus        80 ~~g~~~~~~~~~~~   93 (97)
                      ..|.....+.|.|.
T Consensus       193 ~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          193 GLMTKKNSTFVRVH  206 (213)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99998888877764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.52  E-value=4.2e-14  Score=82.60  Aligned_cols=85  Identities=24%  Similarity=0.322  Sum_probs=64.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.+.+|+.+.+.|.+.|.|.|.+.|++++..+.........  ....   ..++.|..++.+|.|.|+|.+.|..|.
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~--~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~  466 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRL--TVFP---DGTLEVRYAQVQDNGTYLCIAANAGGN  466 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------C--EECT---TSCEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceE--EeCC---CCEEEEeeCChHHCEEEEEEEEeCCCc
Confidence            35678899999999999999999999999988766432111000  0011   236999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.+.|.
T Consensus       467 ~~~~~~l~V~  476 (477)
T 2id5_A          467 DSMPAHLHVR  476 (477)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            8887777664

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.52  E-value=1.7e-13  Score=78.14  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=66.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+..........      ....+|.|..+...|.|.|.|.+.|..|..
T Consensus       320 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  393 (404)
T 3p3y_A          320 KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEHGYL  393 (404)
T ss_dssp             CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEE------EETTEEEESSCCSSCCCEEEEEEEETTEEE
T ss_pred             CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEE------ecCCEEEEeecCHHHCEEEEEEEEeCCCcE
Confidence            34667789999999999999999999999999887543111100      012479999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy9150          85 TRTFKTDFSI   94 (97)
Q Consensus        85 ~~~~~~~~~~   94 (97)
                      ...+.|.|..
T Consensus       394 ~~~~~l~V~d  403 (404)
T 3p3y_A          394 LANAFVSVLD  403 (404)
T ss_dssp             EEEEEEEEC-
T ss_pred             EEEEEEEEEe
Confidence            9888777653

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.52  E-value=1.6e-13  Score=71.15  Aligned_cols=76  Identities=8%  Similarity=0.036  Sum_probs=62.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+..               ....|.|..+..+|.|.|.|.+.|..+...
T Consensus       106 ~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~  170 (184)
T 2ny1_B          106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVE  170 (184)
T ss_dssp             CSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE---------------ESSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc---------------CceEEEEecCCcCCCeEEEEEEEECCceEE
Confidence            34678999999999998899999999998754311               134799999999999999999999998888


Q ss_pred             EEEEEEEEEee
Q psy9150          86 RTFKTDFSITF   96 (97)
Q Consensus        86 ~~~~~~~~~~~   96 (97)
                      ..+.|.+...+
T Consensus       171 ~~~~l~V~~~p  181 (184)
T 2ny1_B          171 FKIDIVVLAFQ  181 (184)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEEEecC
Confidence            88888776554

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.51  E-value=5.7e-13  Score=67.05  Aligned_cols=86  Identities=21%  Similarity=0.228  Sum_probs=62.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe---------CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK---------DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   73 (97)
                      .+..+.+..|+.+.|.|.+.+.+.+.+.|++         ++..+. ..++.....    .....+|.|.+++..|.|.|
T Consensus        44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~-~~r~~~~~~----~~~~~~L~I~~v~~~DsG~Y  118 (145)
T 1z9m_A           44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALR-DNRIQLVTS----TPHELSISISNVALADEGEY  118 (145)
T ss_dssp             BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSC-CTTEEEEEE----CSSEEEEEECSCCGGGCEEE
T ss_pred             CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecc-cCCEEEecC----CCCeEEEEECCCChhhCEEE
Confidence            3457889999999999999998889999994         222221 122222110    11145899999999999999


Q ss_pred             EEEEEcCCCceeEEEEEEEEE
Q psy9150          74 ECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        74 ~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      .|.+.|. +.....+.|.|..
T Consensus       119 ~C~~~n~-~~~~~~~~L~V~~  138 (145)
T 1z9m_A          119 TCSIFTM-PVRTAKSLVTVLG  138 (145)
T ss_dssp             EEEECSS-SCEEEEEEEEEEC
T ss_pred             EEEEEcC-CCceEEEEEEEEe
Confidence            9999999 8777777777654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.51  E-value=5.3e-13  Score=73.89  Aligned_cols=86  Identities=28%  Similarity=0.416  Sum_probs=60.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCC-CCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ-MDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~c~~~~~~g   82 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .....   ........|.|..+.. .|.|.|.|.+.|..|
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~-~~~~~---~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g   88 (304)
T 2yd9_A           13 PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIE---FDESAGAVLRIQPLRTPRDENVYECVAQNSVG   88 (304)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTT-EEEEE---ETTTTEEEEEECSCCTTTTCSEEEEEEECSSC
T ss_pred             CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCc-eEEEE---ecCCCceEEEEecccccCCCeEEEEEEECCCC
Confidence            356778999999999999999999999999998875432 22111   0111235799999997 999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.+.
T Consensus        89 ~~~~~~~l~V~   99 (304)
T 2yd9_A           89 EITVHAKLTVL   99 (304)
T ss_dssp             EECCEEEEEEE
T ss_pred             eEEEEEEEEEe
Confidence            87777666654

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.51  E-value=3.2e-13  Score=64.75  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.+.+.  |.+.|++++..+....++.....     .....|.|..++.+|.|.|.|.+.|    
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n----   83 (108)
T 2dm7_A           15 LKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQD-----GTRCELQIHDLSVADAGEYSCMCGQ----   83 (108)
T ss_dssp             CBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEE-----TTEEEEEESSCCTTTCSEEEEEETT----
T ss_pred             CCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEec-----CCEEEEEECCCCcccCEEEEEEEcC----
Confidence            356789999999999999764  78999999887765544443211     1145699999999999999999844    


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ......|.+.
T Consensus        84 ~~~~~~l~V~   93 (108)
T 2dm7_A           84 ERTSATLTVR   93 (108)
T ss_dssp             EEEEEECEEE
T ss_pred             CEEEEEEEEe
Confidence            3444444443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.51  E-value=1e-12  Score=72.07  Aligned_cols=83  Identities=17%  Similarity=0.254  Sum_probs=64.3

Q ss_pred             eEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           7 YEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..+..|+.+.|.|.+.+ .|.+.+.|++++..+........   ..........|.|..+...|.|.|.|.+.|..|...
T Consensus       196 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  272 (289)
T 3ejj_X          196 LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT  272 (289)
T ss_dssp             EECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred             eEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCcc
Confidence            34467999999999988 78999999999988765332111   011122356899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.+
T Consensus       273 ~s~~L~~  279 (289)
T 3ejj_X          273 ATMNFQV  279 (289)
T ss_dssp             EEEEEEC
T ss_pred             ccEEEEE
Confidence            8887765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.51  E-value=1.3e-12  Score=72.13  Aligned_cols=86  Identities=19%  Similarity=0.351  Sum_probs=66.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ......  ..  .....|.|..++..|.|.|.|.+.|..|
T Consensus        11 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (305)
T 2nzi_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQE--FK--GGYHQLIIASVTDDDATVYQVRATNQGG   86 (305)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEE--ET--TTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEE--CC--CCEEEEEEccCChhhCeEEEEEEEcCCC
Confidence            346788999999999999999999999999998876432 222211  01  1134799999999999999999999998


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .......|.+.
T Consensus        87 ~~~~~~~l~V~   97 (305)
T 2nzi_A           87 SVSGTASLEVE   97 (305)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CccceEEEEEe
Confidence            87776666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=3.2e-13  Score=76.22  Aligned_cols=85  Identities=16%  Similarity=0.291  Sum_probs=64.9

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEE--ecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWH--YGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ...|+.+.+.|.+.|.|.|.+.|+++|..+............  ........+|.|..+...|.|.|+|.+.|..|....
T Consensus       258 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  337 (347)
T 2ifg_A          258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA  337 (347)
T ss_dssp             CEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceee
Confidence            346889999999999999999999999988754432221100  011233668999999999999999999999999888


Q ss_pred             EEEEEEE
Q psy9150          87 TFKTDFS   93 (97)
Q Consensus        87 ~~~~~~~   93 (97)
                      .+.|.|.
T Consensus       338 ~~~l~V~  344 (347)
T 2ifg_A          338 SIMAAFM  344 (347)
T ss_dssp             EEEECSC
T ss_pred             EEEEEec
Confidence            8776653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.50  E-value=7.7e-13  Score=76.64  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+.+.+|+.+.|.|.+.+.|.|.+.|++++..+.......      .......+|.|.+++..|.|.|.|.+.|..|...
T Consensus        57 ~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~------~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~  130 (423)
T 3qs7_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD------LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT  130 (423)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--CEEE
T ss_pred             cEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceec------cccceEEEEEEeecCcccCEEEEEEEEcCCCcEE
Confidence            7789999999999999999999999999987765432211      1111234689999999999999999999999887


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.+.
T Consensus       131 ~~~~l~V~  138 (423)
T 3qs7_E          131 ILFTVSIR  138 (423)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            77766653

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.50  E-value=4.2e-13  Score=71.41  Aligned_cols=85  Identities=21%  Similarity=0.382  Sum_probs=65.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+............    .....|.|..+...|.|.|.|.+.|..+..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeee----cCcceEEEecCCcccCEEEEEEEecccCcc
Confidence            5677889999999999999999999999999988654322110000    012379999999999999999999998887


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.+.+.
T Consensus       103 ~~~~~l~V~  111 (231)
T 3ojm_B          103 NHTYHLDVV  111 (231)
T ss_dssp             EEEEEEEEE
T ss_pred             cccEEEEEE
Confidence            777766664

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.50  E-value=4e-12  Score=65.78  Aligned_cols=84  Identities=15%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             eeeEEEcCCeEEEEEEecccC-CCeeEEEe---CCE-Ecccc--ceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP-RPHITWFK---DGV-ELYTH--MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECY   76 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~---~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~   76 (97)
                      ....+..|+.+.|.|.+.+.| .|.+.|++   ++. .+...  .++....     ......|.|..+. ..|.|.|.|.
T Consensus        91 ~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~~d~G~Y~C~  165 (184)
T 3b5h_A           91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS-----SQGRSELHIENLNMEADPGQYRCN  165 (184)
T ss_dssp             SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE-----ETTEEEEEECSCCTTTSSEEEEEE
T ss_pred             CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe-----cCCeeEEEEeeccccccCceEEEE
Confidence            345678899999999999999 79999999   443 33221  2222211     1113579999999 8999999999


Q ss_pred             EEcCCCceeEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~   93 (97)
                      +.|..|.....+.|.|.
T Consensus       166 a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          166 GTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             EEeCCCcceEEEEEEEe
Confidence            99999998887766653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.50  E-value=6.5e-13  Score=71.25  Aligned_cols=85  Identities=21%  Similarity=0.407  Sum_probs=65.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+............    .....|.|..++..|.|.|.|.+.+..+..
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   98 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSI   98 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeee----ccceEEEEEeCCcccCEEEEEEEeecCCce
Confidence            4678899999999999999999999999999888654322110000    013379999999999999999999998887


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.+.+.
T Consensus        99 ~~~~~l~V~  107 (241)
T 3grw_A           99 RQTYTLDVL  107 (241)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            777666653

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.50  E-value=1.1e-12  Score=69.54  Aligned_cols=77  Identities=12%  Similarity=0.157  Sum_probs=59.4

Q ss_pred             eeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .++.+.+|..+.|.|.+. +.|.|.+.|+++|..+....+..+..   .......+|.|..+..+|.|.|+|.+.|  |.
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~---~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~   84 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI---DRNTGIIEMFMEKLQDEDEGTYTFQLQD--GK   84 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEE---CTTTCEEEEEESCCCGGGCEEEEEEEEE--TT
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEE---eCCCCEEEEEECCCChhhCEEEEEEEEC--CC
Confidence            467889999999999985 47999999999999997655444321   1112245799999999999999999998  44


Q ss_pred             eeE
Q psy9150          84 DTR   86 (97)
Q Consensus        84 ~~~   86 (97)
                      +..
T Consensus        85 a~~   87 (207)
T 3rbs_A           85 ATN   87 (207)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.49  E-value=3.3e-13  Score=71.76  Aligned_cols=74  Identities=24%  Similarity=0.441  Sum_probs=61.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc-e
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV-D   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~-~   84 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+....              ...|.|..+...|.|.|.|.+.|..|. .
T Consensus       127 ~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  192 (218)
T 3k0w_A          127 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KKLYMVPYVDLEHQGTYWCHVYNDRDSQD  192 (218)
T ss_dssp             CEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC--------------SSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC--------------CCEEEEeecChhcCEEEEEEEEcCCCCce
Confidence            4567889999999999999999999999998876432              236899999999999999999998887 4


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.+.
T Consensus       193 s~~~~l~V~  201 (218)
T 3k0w_A          193 SKKVEIIID  201 (218)
T ss_dssp             CCCEEEEEC
T ss_pred             eeeEEEEEe
Confidence            555555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.49  E-value=2.9e-13  Score=76.94  Aligned_cols=80  Identities=19%  Similarity=0.270  Sum_probs=63.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc----eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM----YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..++.+.+|+.+.+.|.+.| |.|.+.|++++..+....    +...         ...+|.|..++.+|.|.|+|.+.|
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~---------~~~~L~I~~v~~~D~G~Y~C~a~N  322 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV---------RNGDLFFKKVQVEDGGVYTCYAMG  322 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE---------ETTEEEESSCCTTSCEEEEEEEEC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe---------ecCeEEEeecCcccCEEEEEEEec
Confidence            35678999999999999999 999999999765543221    1221         134799999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy9150          80 MYNVDTRTFKTDFS   93 (97)
Q Consensus        80 ~~g~~~~~~~~~~~   93 (97)
                      ..|.....+.+.|.
T Consensus       323 ~~g~~~~~~~l~V~  336 (361)
T 2xot_A          323 ETFNETLSVELKVY  336 (361)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CCCccEEEEEEEEE
Confidence            99988888877764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.49  E-value=1.1e-13  Score=71.97  Aligned_cols=81  Identities=23%  Similarity=0.506  Sum_probs=63.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+.........    .    ...|.|..+...|.|.|.|.+.|..|..
T Consensus       108 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  179 (192)
T 2iep_A          108 INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL----E----SGSLRIHNVQKEDAGQYRCVAKNSLGTA  179 (192)
T ss_dssp             CCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC----T----TSCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe----c----CCcEEEecCChhhCEEEEEEEEcCCCcE
Confidence            3567788999999999999999999999999888654433221    1    2369999999999999999999999987


Q ss_pred             -eEEEEEEEE
Q psy9150          85 -TRTFKTDFS   93 (97)
Q Consensus        85 -~~~~~~~~~   93 (97)
                       ...+.|.|.
T Consensus       180 ~s~~~~l~V~  189 (192)
T 2iep_A          180 YSKLVKLEVE  189 (192)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             445666554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.48  E-value=8.7e-13  Score=79.28  Aligned_cols=75  Identities=19%  Similarity=0.460  Sum_probs=64.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+..|+.+.|.|.+.|.|.|.+.|+++|..+..                ...|.|..+...|.|.|.|.+.|..|..
T Consensus       567 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~----------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  630 (642)
T 1e07_A          567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH----------------TQVLFIAKITPNNNGTYACFVSNLATGR  630 (642)
T ss_pred             CceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc----------------CceEEECcccccCCeEEEEEEEecccCc
Confidence            356778899999999999999999999999987653                2368899999999999999999999999


Q ss_pred             eEEEEEEEEEe
Q psy9150          85 TRTFKTDFSIT   95 (97)
Q Consensus        85 ~~~~~~~~~~~   95 (97)
                      .....|.|.+.
T Consensus       631 ~~s~~l~V~v~  641 (642)
T 1e07_A          631 NNSIVKSITVS  641 (642)
T ss_pred             ceeEEEEEEEc
Confidence            88888877653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.48  E-value=1.5e-13  Score=78.37  Aligned_cols=80  Identities=25%  Similarity=0.438  Sum_probs=65.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+.........    .    ...|.|..+...|.|.|.|.+.|..|..
T Consensus       320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  391 (403)
T 3laf_A          320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV----G----GSNLRILGVVKSDEGFYQCVAENEAGNA  391 (403)
T ss_dssp             CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE----T----TTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe----c----CccEEEeccccccCEEEEEEEEcCCceE
Confidence            3455678999999999999999999999999988655433321    1    2469999999999999999999999999


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.|.|
T Consensus       392 ~~~~~l~V  399 (403)
T 3laf_A          392 QSSAQLIV  399 (403)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            88887765

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.48  E-value=6.7e-13  Score=69.68  Aligned_cols=90  Identities=14%  Similarity=0.092  Sum_probs=62.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-----CeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-----PHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-----p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +...+.+.+|+.+.|.|.+.+.|.     +.+.|++ ++.......+......  .......+|.|.+++..|.|.|.|.
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~   85 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE--QLPLGKALFHIPSVQVRDSGQYRCL   85 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGG--GGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeec--cccCCeeEEEECCCCHHHCcEEEEE
Confidence            456788999999999999988876     8899999 4433322222222100  0011246899999999999999999


Q ss_pred             EEcCCCceeEEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~~   94 (97)
                      +.+..+.....+.|.+..
T Consensus        86 ~~~~~~~~~~~~~l~V~~  103 (202)
T 3bp6_B           86 VICGAAWDYKYLTVKVKA  103 (202)
T ss_dssp             EEETTEEEEEEEEEEEEB
T ss_pred             EEeCCCcceEEEEEEecC
Confidence            999988777777666543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.48  E-value=2.3e-12  Score=69.09  Aligned_cols=90  Identities=22%  Similarity=0.426  Sum_probs=65.7

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEe----CCEEccccceeeE--E-EEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFK----DGVELYTHMYVNL--H-EWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~----~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++    ++..+........  . ............|.|..+...|.|.|.|.+
T Consensus       122 ~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  201 (241)
T 3grw_A          122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA  201 (241)
T ss_dssp             CSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEE
Confidence            34556779999999999999999999999    7766654322111  1 111112233568999999999999999999


Q ss_pred             EcCCCceeEEEEEEEEE
Q psy9150          78 DNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        78 ~~~~g~~~~~~~~~~~~   94 (97)
                      .|..|.....+.|.+..
T Consensus       202 ~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          202 TNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             ECSSCEEEEEEEEEC--
T ss_pred             ecCcceEEEEEEEEecC
Confidence            99999998888777643

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.48  E-value=1e-12  Score=68.34  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             eeEEEc-CCeEEEEEEecccCC--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           6 DYEYVL-GHKIVFICMAKGKPR--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         6 ~~~~~~-g~~~~l~c~~~~~~~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...+.+ |+.+.|.|.+.+.+.  +.+.|++++..+.......          ....|.|..+...|.|.|.|.+.|. +
T Consensus        11 ~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~-~   79 (190)
T 2wv3_A           11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----------SNMEYRINKPRAEDSGEYHCVYHFV-S   79 (190)
T ss_dssp             CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----------SEEEEEESSCCGGGCEEEEEEEEET-T
T ss_pred             eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe----------ccEEEEEecCCcccCEEEEEEEEeC-C
Confidence            344556 999999999988877  7899999998886543221          1468999999999999999999998 7


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.+.
T Consensus        80 ~~~~~~~l~V~   90 (190)
T 2wv3_A           80 APKANATIEVK   90 (190)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cccccEEEEEe
Confidence            77666666553

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.48  E-value=1.5e-12  Score=71.90  Aligned_cols=84  Identities=23%  Similarity=0.294  Sum_probs=66.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEcc-CCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP-ATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+..|+.+.|.|.+.+.|.|.+.|++++..+....+.....     ......|.+.. +...|.|.|.|.+.|..|.
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~  186 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV-----TRSFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (305)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEE-----CSSEEEEEETTCCCSTTCEEEEEEEEETTEE
T ss_pred             ccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEE-----cCCceEEEEecCCccCccEEEEEEEEeCCCc
Confidence            34667889999999999999999999999988776554443321     11145788998 9999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.+.
T Consensus       187 ~~~~~~l~v~  196 (305)
T 2nzi_A          187 DQKTVELDVA  196 (305)
T ss_dssp             EEEEEEEEEE
T ss_pred             eeeEEEEEEe
Confidence            8887777664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.47  E-value=1.5e-12  Score=67.61  Aligned_cols=83  Identities=17%  Similarity=0.307  Sum_probs=62.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +..++.+..|+.+.|.|.+.+.|.+.+.|++++..+... .+....    ..   ...|.|..+...|.|.|.|.+.+..
T Consensus        13 ~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~----~~---~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (192)
T 2iep_A           13 PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR----EN---GQLLTILSVEDSDDGIYCCTANNGV   85 (192)
T ss_dssp             CCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE----GG---GTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc----CC---ccEEEEcCCCcccCeEEEEEEEcCC
Confidence            345678899999999999999999999999999887642 222211    11   2369999999999999999999988


Q ss_pred             Cce-eEEEEEEE
Q psy9150          82 NVD-TRTFKTDF   92 (97)
Q Consensus        82 g~~-~~~~~~~~   92 (97)
                      |.. .....+.+
T Consensus        86 ~~~~~~~~~l~v   97 (192)
T 2iep_A           86 GGAVESCGALQV   97 (192)
T ss_dssp             SCCEEEEEEEEE
T ss_pred             CceeEeEEEEEE
Confidence            763 44444444

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.47  E-value=6.3e-13  Score=75.85  Aligned_cols=79  Identities=27%  Similarity=0.400  Sum_probs=61.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.......      .   ....|.|..+..+|.|.|.|.+.|..|..
T Consensus       214 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~------~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  284 (384)
T 3kld_A          214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH------K---SNGILEIPNFQQEDAGSYECVAENSRGKN  284 (384)
T ss_dssp             EEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEEC------T---TSCEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceec------C---CCcEEEECCCChhhCEEEEEEEEcCCCeE
Confidence            45677899999999999999999999984 44443322111      0   13479999999999999999999999988


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      .....|.+.
T Consensus       285 ~~~~~l~v~  293 (384)
T 3kld_A          285 VAKGQLTFY  293 (384)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            776666654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.47  E-value=2.6e-13  Score=71.82  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=60.5

Q ss_pred             eeEEEcCCeEEEEEE---ecccCCCeeEEEeCCEEccccceeeEE------EE------EecCceEEEEEEEccCCCCCC
Q psy9150           6 DYEYVLGHKIVFICM---AKGKPRPHITWFKDGVELYTHMYVNLH------EW------HYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~---~~~~~~p~i~w~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      .+++..|+.+.|.|.   +.+.|.|.+.|+++|............      ..      ..........|.|..++..|.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            578899999999995   467899999999976432211000000      00      000011135799999999999


Q ss_pred             EEEEEEEEcCCCceeEEEEEEEE
Q psy9150          71 GIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        71 g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      |.|.|.+.|..|.....+.|.+.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~  104 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVV  104 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEec
Confidence            99999999999988877766653

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.47  E-value=1.9e-13  Score=71.04  Aligned_cols=81  Identities=17%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+..........  ..    ...|.|..+...|.|.|.|.+.|..+...
T Consensus       109 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~--~~----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  182 (191)
T 1epf_A          109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--LS----NNYLQIRGIKKTDEGTYRCEGRILARGEI  182 (191)
T ss_dssp             SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE--CT----TSCEEETTCCGGGCEEEEEEEEEGGGTEE
T ss_pred             cEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEE--ec----CCeEEECCCChhhCEEEEEEEEEecceeE
Confidence            4567789999999999999999999999999886432211110  01    23699999999999999999999887655


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ....+.+
T Consensus       183 ~~~~i~v  189 (191)
T 1epf_A          183 NFKDIQV  189 (191)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5544444

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.47  E-value=1.1e-12  Score=69.74  Aligned_cols=75  Identities=23%  Similarity=0.405  Sum_probs=61.0

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+....              ...|.|..+...|.|.|.|.+.+..+.
T Consensus        25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~   90 (218)
T 3k0w_A           25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------------TSELIFNAVHVKDAGFYVCRVNNNFTF   90 (218)
T ss_dssp             CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC--------------SSEEEETTCCGGGCEEEEEEEECTTCC
T ss_pred             CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC--------------CCEEEEccCChhhCeEeEEEEEcCCCC
Confidence            457788999999999999999999999999998875432              247999999999999999999998775


Q ss_pred             e-eEEEEEEE
Q psy9150          84 D-TRTFKTDF   92 (97)
Q Consensus        84 ~-~~~~~~~~   92 (97)
                      . ...+.+.+
T Consensus        91 ~~s~~~~l~V  100 (218)
T 3k0w_A           91 EFSQWSQLDV  100 (218)
T ss_dssp             EECCCEEEEE
T ss_pred             ceeeEEEEEE
Confidence            4 33344444

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.46  E-value=7.1e-13  Score=69.78  Aligned_cols=81  Identities=27%  Similarity=0.379  Sum_probs=63.0

Q ss_pred             eeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ....+..|+.+.|.|.+ .+.|.|.+.|++++..+.........        ....|.|..+...|.|.|.|.+.|..|.
T Consensus       119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~  190 (212)
T 2v9r_A          119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI--------RGGKLMITYTRKSDAGKYVCVGTNMVGE  190 (212)
T ss_dssp             CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE--------ETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc--------cCCeEEEeeCCHhhCeeEEEEEecccCc
Confidence            45678899999999998 89999999999999888653321111        0247999999999999999999999987


Q ss_pred             eeE-EEEEEEE
Q psy9150          84 DTR-TFKTDFS   93 (97)
Q Consensus        84 ~~~-~~~~~~~   93 (97)
                      ... .+.|.+.
T Consensus       191 ~~s~~~~l~V~  201 (212)
T 2v9r_A          191 RESEVAELTVL  201 (212)
T ss_dssp             EECCCEEEEEE
T ss_pred             eecceEEEEEE
Confidence            644 3555554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.46  E-value=2.6e-12  Score=67.81  Aligned_cols=80  Identities=16%  Similarity=0.254  Sum_probs=58.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCC-EEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDG-VELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++. ..+.  .....     ..  ....|.|..++..|.|.|.|.+.|..|.
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~~~-----~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   79 (202)
T 1vca_A            9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTN-----EG--TTSTLTMNPVSFGNEHSYLCTATCESRK   79 (202)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEE-----ET--TEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             CcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceEEE-----cC--CccEEEECcCCHHHCEEEEEEEEECCce
Confidence            3445569999999999999999999999842 2111  11100     01  1346999999999999999999999887


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        80 ~~~~~~l~V~   89 (202)
T 1vca_A           80 LEKGIQVEIY   89 (202)
T ss_dssp             EEEEEEEEEE
T ss_pred             EeeEEEEEEE
Confidence            7776666654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.46  E-value=1.4e-12  Score=69.44  Aligned_cols=90  Identities=20%  Similarity=0.312  Sum_probs=66.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEe----CCEEccccceeeEEEEEec--CceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFK----DGVELYTHMYVNLHEWHYG--TDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++    ++..+..............  .......|.|..+...|.|.|.|.+.
T Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  205 (231)
T 3ojm_B          126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS  205 (231)
T ss_dssp             CCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEE
Confidence            45678889999999999999999999999    7766643322111110001  11123469999999999999999999


Q ss_pred             cCCCceeEEEEEEEEE
Q psy9150          79 NMYNVDTRTFKTDFSI   94 (97)
Q Consensus        79 ~~~g~~~~~~~~~~~~   94 (97)
                      |..|.....+.|.+..
T Consensus       206 n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          206 NYIGQANQSAWLTVLP  221 (231)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eccceEeeEEEEEEec
Confidence            9999988888777653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.46  E-value=6.8e-13  Score=73.45  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=58.6

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+.......         .....|.+..+  .|.|.|.|.+.|..|....
T Consensus       215 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~  283 (304)
T 2yd9_A          215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---------VGRNVLELTDV--KDSANYTCVAMSSLGVIEA  283 (304)
T ss_dssp             BCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC---------BSEEEEEECSC--CSCEEEEEEEEETTEEEEE
T ss_pred             eEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc---------CCcEEEEEccc--ccCEEEEEEEEeCCCcEEE
Confidence            346788999999999999999999999998886543221         11335666665  5899999999999999988


Q ss_pred             EEEEEEEE
Q psy9150          87 TFKTDFSI   94 (97)
Q Consensus        87 ~~~~~~~~   94 (97)
                      .+.|.|..
T Consensus       284 ~~~l~V~~  291 (304)
T 2yd9_A          284 VAQITVKS  291 (304)
T ss_dssp             EEEEC---
T ss_pred             EEEEEEec
Confidence            88777654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.45  E-value=3.2e-12  Score=71.58  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=64.1

Q ss_pred             eeeEEEcCCeEEEEEEecccC---CC-eeEEEeCCEEccc-cceeeEEEEEecCceEEEEEEEccCCCCCCE-EEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP---RP-HITWFKDGVELYT-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYAD   78 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~---~p-~i~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~c~~~   78 (97)
                      ....+..|+.+.|.|.+.+.|   .| .+.|++++..+.. ........ ..........|.|..+...|.| .|.|.+.
T Consensus       236 ~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~  314 (329)
T 3oq3_B          236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSIL-TSSGGITEATLYFENVTEEYIGNTYTCRGH  314 (329)
T ss_dssp             SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEE-EEETTEEEEEEEESSCCGGGTTCEEEEEEE
T ss_pred             CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeee-cccCceeEeEEEEEeccHHHCCCcEEEEEE
Confidence            346778899999999999987   77 7899999887432 22111110 0111124678999999999999 9999999


Q ss_pred             cCCCceeEEEEEEE
Q psy9150          79 NMYNVDTRTFKTDF   92 (97)
Q Consensus        79 ~~~g~~~~~~~~~~   92 (97)
                      |..|.....+.|.+
T Consensus       315 N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          315 NYYFDKTLTTTVVL  328 (329)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             ecCCceEEEEEEEe
Confidence            99999888776654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.45  E-value=2.2e-13  Score=72.14  Aligned_cols=84  Identities=24%  Similarity=0.424  Sum_probs=60.9

Q ss_pred             eeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ....+..|+.+.|.|.+ .+.|.|.+.|++++..+...........  ...  .....|.|..+..+|.|.|.|.+.|..
T Consensus       116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  193 (217)
T 2vr9_A          116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS--SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV  193 (217)
T ss_dssp             CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CC--CSEEEETTTEEEESSCCSTTCEEEEEEEEETT
T ss_pred             CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccC--CcEEecCCCcEEEeeCCHHHCeEEEEEEEccc
Confidence            35667889999999998 8999999999999988763221110000  000  002379999999999999999999999


Q ss_pred             CceeEEEEE
Q psy9150          82 NVDTRTFKT   90 (97)
Q Consensus        82 g~~~~~~~~   90 (97)
                      |.......+
T Consensus       194 G~~~~~~~~  202 (217)
T 2vr9_A          194 GTRESSYAK  202 (217)
T ss_dssp             EEEECCCEE
T ss_pred             ceeccccEE
Confidence            987655433

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.45  E-value=1.1e-11  Score=64.41  Aligned_cols=85  Identities=25%  Similarity=0.393  Sum_probs=62.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-CCeeEEEe-CCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-RPHITWFK-DGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +.+..+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+... .+......    ......|.|..+...|.|.|.|.+.+.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN----DDDSSTLTIYNANIDDAGIYKCVVTAE   84 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEEC----CCCceEEEEccCCcccCEEEEEEEEcC
Confidence            4567889999999999998876 78999999 88777632 23322111    112468999999999999999999998


Q ss_pred             CC-ceeEEEEEEE
Q psy9150          81 YN-VDTRTFKTDF   92 (97)
Q Consensus        81 ~g-~~~~~~~~~~   92 (97)
                      .+ .....+.|.+
T Consensus        85 ~~~~~~~~~~l~v   97 (191)
T 1epf_A           85 DGTQSEATVNVKI   97 (191)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCcceEEEEEEEe
Confidence            84 4445555544

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.44  E-value=8.3e-13  Score=72.62  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             eEEEcCCeEEEEEEecccCCCe-eEEEeCCEEc----cccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPH-ITWFKDGVEL----YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+..|+.+.|.|.+.+.|.|. +.|++++..+    .........  ..........|.|..+...|.|.|.|.+.|..
T Consensus       198 ~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~  275 (290)
T 2o26_X          198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR--GDFNYERQETLTISSARVDDSGVFMCYANNTF  275 (290)
T ss_dssp             CCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEE--ETTEEEEEEEEEESSCCSSSCEEEEEEEECSS
T ss_pred             ceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccccc--CceeeEEEEEEEEcCCCcccCeEEEEEEeCCC
Confidence            4567899999999999999997 9999988663    221111111  00011225689999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy9150          82 NVDTRTFKTDFS   93 (97)
Q Consensus        82 g~~~~~~~~~~~   93 (97)
                      |.....+.|.|.
T Consensus       276 g~~~~~~~l~V~  287 (290)
T 2o26_X          276 GSANVTTTLKVV  287 (290)
T ss_dssp             CEEEEEEEECC-
T ss_pred             CcEEEEEEEEEE
Confidence            999887776654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.44  E-value=1.5e-12  Score=67.94  Aligned_cols=75  Identities=24%  Similarity=0.390  Sum_probs=59.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+.|.| .+.|++++..+......          .....|.|..+.  |.|.|.|.+.|..|..
T Consensus       115 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~  182 (195)
T 2c5d_C          115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----------GPQRSLHVPGLN--KTSSFSCEAHNAKGVT  182 (195)
T ss_dssp             CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----------SCCEEEEECCCS--SCEEEEEEEEETTEEE
T ss_pred             cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----------CCCCeEEEcccc--cCceEEEEEEcCCCce
Confidence            4567889999999999999999 99999999877644321          114578888887  7899999999999987


Q ss_pred             e-EEEEEEE
Q psy9150          85 T-RTFKTDF   92 (97)
Q Consensus        85 ~-~~~~~~~   92 (97)
                      . ..+.|.|
T Consensus       183 ~s~~~~l~V  191 (195)
T 2c5d_C          183 TSRTATITV  191 (195)
T ss_dssp             ECCCEEEEE
T ss_pred             EEEEEEEEE
Confidence            5 6776665

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.44  E-value=1.1e-11  Score=76.25  Aligned_cols=87  Identities=22%  Similarity=0.432  Sum_probs=68.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.....................|.|..+...|.|.|.|.+.|..|...
T Consensus       438 ~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  517 (816)
T 3dmk_A          438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE  517 (816)
T ss_dssp             CEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE
T ss_pred             ceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE
Confidence            45677899999999999999999999999998876554433222223333456799999999999999999999999887


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ....|.+
T Consensus       518 ~~~~l~V  524 (816)
T 3dmk_A          518 HSAKLNV  524 (816)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7776665

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.44  E-value=3.9e-14  Score=78.47  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             eEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..+..|+.+.|.|.+.|.|.| .+.|++++..+......       ..   ...+.|..+...|.|.|.|.+.|..|...
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~-------~~---~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~  291 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA-------SD---NTLHFVHPLTFNYSGVYICKVTNSLGQRS  291 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC-------ST---TEEECCSCCCSCCCSEEEEEEEETTEEEE
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE-------cC---CeEEEECCCChhhCEEEEEEEEeCCCcEE
Confidence            345667889999999999988 59999988776543211       11   23566788999999999999999999998


Q ss_pred             EEEEEEEEEe
Q psy9150          86 RTFKTDFSIT   95 (97)
Q Consensus        86 ~~~~~~~~~~   95 (97)
                      ..+.|.|..-
T Consensus       292 ~~~~l~V~~~  301 (308)
T 4fom_A          292 DQKVIYISDP  301 (308)
T ss_dssp             EEEECCEECC
T ss_pred             EEEEEEEEcC
Confidence            8888777643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.43  E-value=1.9e-12  Score=76.30  Aligned_cols=87  Identities=14%  Similarity=0.144  Sum_probs=66.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ...+.+|+.+.|.|.+.|.|.|. +.|++++..+..... ..... ..........|.|..+...|.|.|.|.+.|..|.
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  400 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE-NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN  400 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC-SSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc-cCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence            56788999999999999999999 999999988765431 11100 0000113568999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.+.
T Consensus       401 ~~~~~~l~V~  410 (524)
T 2ec8_A          401 AAIAFNVYVN  410 (524)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEe
Confidence            8877777654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.43  E-value=2.4e-12  Score=71.33  Aligned_cols=78  Identities=22%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             eeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ++.+.+|+.+.|.|.+.+. |.+.+.|++++..+.........       .....|.|..+...|.|.|.|.+.|..|..
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~   87 (317)
T 2y25_A           15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKD   87 (317)
T ss_dssp             EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTTCSCEEEEEESSSCEE
T ss_pred             eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE-------CCeEEEEEccCCcccCeEEEEEEECCCCcE
Confidence            5788899999999999887 77899999999888754433221       113589999999999999999999998876


Q ss_pred             eEEEEE
Q psy9150          85 TRTFKT   90 (97)
Q Consensus        85 ~~~~~~   90 (97)
                      ...+.|
T Consensus        88 ~~~~~l   93 (317)
T 2y25_A           88 KSRLKL   93 (317)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            655433

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=80.42  Aligned_cols=79  Identities=19%  Similarity=0.081  Sum_probs=62.9

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+++|..+........         ....|.|..+...|.|.|+|.+.|..|...
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~  405 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFT  405 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEE
T ss_pred             cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccccc---------CCcEEEEecCCcccCEEEEEEEEeCCCcEE
Confidence            45667899999999999999999999999998865432111         134688999999999999999999999888


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.|.
T Consensus       406 ~~~~L~V~  413 (527)
T 3qs9_E          406 KMFTLNIR  413 (527)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEEEe
Confidence            77766553

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.42  E-value=3.3e-13  Score=75.32  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             EEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEc-cCCCCCCEEEEEEEEcCCCcee
Q psy9150           8 EYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID-PATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+..|+.+.|.|.+.+.|.|. +.|++++..+......           ...+|.|. .+...|.|.|.|.+.|..|...
T Consensus       243 ~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~-----------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~  311 (331)
T 3u83_A          243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA-----------QNRTLFFKGPINYSLAGTYICEATNPIGTRS  311 (331)
T ss_dssp             CBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEE-----------ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccccee-----------cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence            356789999999999999998 9999998877543211           13478999 8999999999999999999988


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.|.
T Consensus       312 ~~~~l~V~  319 (331)
T 3u83_A          312 GQVEVNIT  319 (331)
T ss_dssp             EEEEECCB
T ss_pred             EEEEEEEe
Confidence            87777654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.42  E-value=1.1e-11  Score=71.80  Aligned_cols=85  Identities=13%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             eeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecC-ceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGT-DRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.+|+.+.|.|.+.| .|.|.+.|++++..+............... .....+|.|..+...|.|.|.|.+.|.  
T Consensus       235 ~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~--  312 (423)
T 3qs7_E          235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--  312 (423)
T ss_dssp             TEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE--
T ss_pred             CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC--
Confidence            3567889999999999988 677999999999877543222111100010 122457999999999999999999988  


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                       ....+.|.|
T Consensus       313 -~~~~~~L~V  321 (423)
T 3qs7_E          313 -PSQSALVTI  321 (423)
T ss_dssp             -EEEEEEEEE
T ss_pred             -CCceEEEEE
Confidence             444444444

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.42  E-value=2.4e-12  Score=67.69  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ++.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+.            ...+....         ...|.|..+...|.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~L~i~~v~~~D~   77 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS---------SSGITFSSVTRKDN   77 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE---------TTEEEESCCCGGGC
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee---------ceeEEEcccCcccC
Confidence            4567889999999999999998999999998664421            01111111         25799999999999


Q ss_pred             EEEEEEEEcCCCc--eeEEEEEEE
Q psy9150          71 GIYECYADNMYNV--DTRTFKTDF   92 (97)
Q Consensus        71 g~y~c~~~~~~g~--~~~~~~~~~   92 (97)
                      |.|.|.+.+..|.  ....+.|.+
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V  101 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTV  101 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             eEEEEEEEccCCCcccEEEEEEEE
Confidence            9999999998773  344444444

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.41  E-value=8.1e-12  Score=64.47  Aligned_cols=73  Identities=19%  Similarity=0.392  Sum_probs=57.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+..|+.+.|.|.+.+.|.| .+.|++++..+.....            ....|.|..+  +|.|.|.|.+.|..|..
T Consensus       107 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~  172 (182)
T 1rhf_A          107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------------SPSVLNVTGV--TQSTMFSCEAHNLKGLA  172 (182)
T ss_dssp             CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------------SSEEEEECCC--SSCEEEEEEEEETTEEE
T ss_pred             ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC------------CceEEEEecc--ccCeEEEEEEECCCCCc
Confidence            4567889999999999999999 9999999988754321            1357888887  58899999999999987


Q ss_pred             e-EEEEEEE
Q psy9150          85 T-RTFKTDF   92 (97)
Q Consensus        85 ~-~~~~~~~   92 (97)
                      . ..+.|.|
T Consensus       173 ~s~~~~l~V  181 (182)
T 1rhf_A          173 SSRTATVHL  181 (182)
T ss_dssp             ECCCEEEEE
T ss_pred             ccceEEEEe
Confidence            4 3655544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.41  E-value=6.2e-13  Score=69.92  Aligned_cols=76  Identities=24%  Similarity=0.406  Sum_probs=59.0

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee-EE
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT-RT   87 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~-~~   87 (97)
                      +..|+.+.|.|.+.+.| |.+.|++++..+.........    ..   ..+|.|..+...|.|.|.|.+.|..|... ..
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~----~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~  193 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLS----QN---NSILRIDPIKREDAGEYQCEISNPVSVRRSNS  193 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEE----TT---TTEEEESSCCGGGCEEEEEEEECTTCCEECCC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEc----CC---CCEEEEeccCHHhCeEEEEEEecCCCcccCCc
Confidence            56788999999998865 899999999988755443321    11   24799999999999999999999999864 45


Q ss_pred             EEEEE
Q psy9150          88 FKTDF   92 (97)
Q Consensus        88 ~~~~~   92 (97)
                      +.|.+
T Consensus       194 ~~l~v  198 (208)
T 3r4d_A          194 IKLDI  198 (208)
T ss_dssp             EEECC
T ss_pred             eeeeE
Confidence            55543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.40  E-value=4.5e-13  Score=72.14  Aligned_cols=79  Identities=14%  Similarity=0.077  Sum_probs=55.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceee--EEEE-----------EecCce---EEEEEEEccCCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVN--LHEW-----------HYGTDR---IKSKIEIDPATQMD   69 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~--~~~~-----------~~~~~~---~~~~l~i~~~~~~~   69 (97)
                      .+.+.+|+.+.|.|.+.+.|.|.+.|++++..+.......  ....           ......   ....|.|..+..+|
T Consensus       145 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D  224 (250)
T 2fbo_J          145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD  224 (250)
T ss_dssp             EEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGG
T ss_pred             eEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCccc
Confidence            4556679999999999999999999999987764321110  0000           000011   02479999999999


Q ss_pred             CEEEEEEEEcCCCce
Q psy9150          70 AGIYECYADNMYNVD   84 (97)
Q Consensus        70 ~g~y~c~~~~~~g~~   84 (97)
                      .|.|.|.+.|..|..
T Consensus       225 ~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          225 AGRVWCELATGQGEL  239 (250)
T ss_dssp             CEEEEEEEESSSSGG
T ss_pred             CEEEEEEecCCcccc
Confidence            999999999966643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=2e-12  Score=75.09  Aligned_cols=84  Identities=17%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCE-Eccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGV-ELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.++.+.+|+.+.+.|.+ +.|.|.+.|++++. .+..... .+..  ...    ..+|.|..++.+|.|.|+|.+.|..
T Consensus       348 ~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~  420 (440)
T 3zyj_A          348 PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIA--VLS----DGTLNFTNVTVQDTGMYTCMVSNSV  420 (440)
T ss_dssp             CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEE--ECT----TCCEEESSCCSTTCEEEEEEEECSS
T ss_pred             ccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEE--Ecc----CCeEEEccCChhhCEEEEEEEEcCC
Confidence            456788899999999999 56899999998543 3322110 0110  001    2369999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy9150          82 NVDTRTFKTDFSI   94 (97)
Q Consensus        82 g~~~~~~~~~~~~   94 (97)
                      |.......+.+..
T Consensus       421 G~~~~~~~~~v~~  433 (440)
T 3zyj_A          421 GNTTASATLNVTG  433 (440)
T ss_dssp             CEEEEEEEEEEC-
T ss_pred             CcEEEEEEEEEec
Confidence            9998888777643

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.40  E-value=5.9e-12  Score=71.62  Aligned_cols=81  Identities=25%  Similarity=0.381  Sum_probs=63.3

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.+..|+.+.|.|.+.|.|.|.+.|++++..+....  +....     .......|.|..+...|.|.|.|.+.|..|..
T Consensus       110 ~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  184 (389)
T 2jll_A          110 YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTY-----STGRKMILEIAPTSDNDFGRYNCTATNHIGTR  184 (389)
T ss_dssp             EEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEE-----ECSSCEEEEECCCSTTSSEEEEEEEEETTEEE
T ss_pred             EEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEe-----ccCCEEEEEECCCChhhCEEEEEEEEcCCCcE
Confidence            456789999999999999999999999999887543  22221     11124579999999999999999999999987


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.+.+
T Consensus       185 ~~~~~l~v  192 (389)
T 2jll_A          185 FQEYILAL  192 (389)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            76655543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.40  E-value=4.4e-12  Score=72.34  Aligned_cols=80  Identities=24%  Similarity=0.478  Sum_probs=64.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+...... ..    .   ....|.|..+...|.|.|.|.+.|..|...
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-~~----~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  302 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK-FE----N---FNKALRITNVSEEDSGEYFCLASNKMGSIR  302 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEE-EE----G---GGTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccc-cc----c---cCceEEEccCCHhHCEEEEEEEEeCCCcEE
Confidence            466889999999999999999999999999877644321 10    0   034799999999999999999999999887


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.+.
T Consensus       303 ~~~~l~V~  310 (404)
T 3p3y_A          303 HTISVRVK  310 (404)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            77776664

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.40  E-value=2.5e-14  Score=87.04  Aligned_cols=83  Identities=24%  Similarity=0.390  Sum_probs=0.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +..+..|+.+.|.|.+.|.|.|.+.|++++..+....+....       ....+|.|..+..+|.|.|.|.+.|..|...
T Consensus       675 ~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  747 (772)
T 3v2a_R          675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-------DGNRNLTIRRVRKEDEGLYTCQACSVLGCAK  747 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEc-------CCCcEEEECcCCHHHCEEEEEEEEeCCccee
Confidence            456778999999999999999999999999888654433221       1145799999999999999999999999998


Q ss_pred             EEEEEEEEEe
Q psy9150          86 RTFKTDFSIT   95 (97)
Q Consensus        86 ~~~~~~~~~~   95 (97)
                      ..+.|.|..-
T Consensus       748 ~~~~l~V~~~  757 (772)
T 3v2a_R          748 VEAFFIIEGA  757 (772)
T ss_dssp             ----------
T ss_pred             EEEEEEEECC
Confidence            8887777543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.39  E-value=1.1e-12  Score=68.35  Aligned_cols=67  Identities=19%  Similarity=0.390  Sum_probs=53.6

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEcc-CCCCCCEEEEEEEEcCCCceeE
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP-ATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ....|+.+.|.|.+.+ +. .+.|+++|..+....              ..+|.|.. +...|.|.|.|.+.|..|....
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~--------------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~   73 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH--------------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYL   73 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC--------------CSEEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC--------------CCEEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence            4478999999999987 44 499999998876531              23699999 9999999999999999887555


Q ss_pred             EEEE
Q psy9150          87 TFKT   90 (97)
Q Consensus        87 ~~~~   90 (97)
                      .+.+
T Consensus        74 ~~~~   77 (186)
T 1jbj_A           74 YLKA   77 (186)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            4443

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.39  E-value=2.3e-13  Score=62.34  Aligned_cols=61  Identities=20%  Similarity=0.375  Sum_probs=48.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccC-CCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA-TQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~c~~~~   79 (97)
                      .+....+..|+.+.|.|.+.|.|.  |.|+++|..+....              ..+|.|..+ ..+|+|.|.|.+..
T Consensus         5 ~p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~~--------------~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            5 NIEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQKH--------------DKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTCC--------------SSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CCceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCCC--------------CCEEEECccCccCcCEEEEEEEcc
Confidence            345566778999999999999873  99999999886431              236888995 78999999999865

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.39  E-value=4.5e-12  Score=67.63  Aligned_cols=85  Identities=13%  Similarity=0.087  Sum_probs=53.5

Q ss_pred             eeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ....+..|..+.+.|.+.+ .|.|.+.|++++..+..........   ........+.+..++..|.|.|+|.+.|..|.
T Consensus       126 ~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~---~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~  202 (226)
T 4f80_A          126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVA---DGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG  202 (226)
T ss_dssp             EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEE---CTTSCEEEEEEEEECC----CEEEEEEETTTT
T ss_pred             ceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEE---CCCCcEEEEEEEEechhcCcEEEEEEEeCCCC
Confidence            4566778999999999987 5999999998654332222111111   11111223334456778999999999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ..+...|.|
T Consensus       203 ~~~~~~v~v  211 (226)
T 4f80_A          203 LEKTASISI  211 (226)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEEE
Confidence            888777655

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.39  E-value=5.4e-12  Score=71.99  Aligned_cols=81  Identities=20%  Similarity=0.297  Sum_probs=64.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+.+|+.+.|.|.+.+.|.|.+.|++++..+..........   .    ...|.|..+...|.|.|.|.+.|..|...
T Consensus       230 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  302 (403)
T 3laf_A          230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL---G----GSNLLISNVTDDDSGTYTCVVTYKNENIS  302 (403)
T ss_dssp             CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE---T----TTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC---C----ccEEEEeCCCHHHCEEEEEEEEcCCCceE
Confidence            4567789999999999999999999999998876433211110   1    24699999999999999999999999887


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.+.
T Consensus       303 ~~~~l~V~  310 (403)
T 3laf_A          303 ASAELTVL  310 (403)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            77776664

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.39  E-value=7.7e-12  Score=71.20  Aligned_cols=85  Identities=18%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+..........   ........|.|..+...|.|.|.|.+.|..|...
T Consensus       221 ~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  297 (395)
T 1bih_A          221 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ  297 (395)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES---CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             ceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE---EecCCCceEEEccCChhhCEEEEEEEEeCCCCce
Confidence            4678899999999999999999999999998876432221110   0011123799999999999999999999998865


Q ss_pred             E-EEEEEEE
Q psy9150          86 R-TFKTDFS   93 (97)
Q Consensus        86 ~-~~~~~~~   93 (97)
                      . .+.|.+.
T Consensus       298 ~~~~~l~V~  306 (395)
T 1bih_A          298 KHSLKLTVV  306 (395)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            4 6666554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.38  E-value=1.2e-12  Score=68.79  Aligned_cols=87  Identities=26%  Similarity=0.484  Sum_probs=59.8

Q ss_pred             eEEEcCCeEEEEEE-ecccCCCeeEEEeCCE-EccccceeeEEE--EEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICM-AKGKPRPHITWFKDGV-ELYTHMYVNLHE--WHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~-~~~~~~p~i~w~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+..|+.+.|.|. ..+.|.|.+.|++++. .+..........  ...........|.|..+..+|.|.|.|.+.|..|
T Consensus       114 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  193 (212)
T 1f97_A          114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG  193 (212)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccC
Confidence            45788999999999 7899999999999998 765432210000  0000001134799999999999999999999999


Q ss_pred             ce--eEEEEEEEE
Q psy9150          83 VD--TRTFKTDFS   93 (97)
Q Consensus        83 ~~--~~~~~~~~~   93 (97)
                      ..  ...+.|.+.
T Consensus       194 ~~~~s~~~~l~V~  206 (212)
T 1f97_A          194 TAMRSEAAHMDAV  206 (212)
T ss_dssp             CCEECCCEEEEEE
T ss_pred             CccccceEEEEEE
Confidence            87  445555543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.38  E-value=9.8e-12  Score=66.32  Aligned_cols=90  Identities=13%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCC---eeEEEeCCEEc-----------cccc----eeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRP---HITWFKDGVEL-----------YTHM----YVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      |...+.+.+|+.+.|.|.+.+.+.+   .+.|++++...           ....    ..+.............+|.|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            5566889999999999999766544   58999865321           1100    0000000001112256899999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      ++..|.|.|.|.+.|..|.....+.+.+
T Consensus        90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~  117 (226)
T 4f80_A           90 VTASDSGKYLCYFQDGDFYEKALVELKV  117 (226)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CchHHCeeEEEEEECCCcEEEEEEEEee
Confidence            9999999999999998887766554443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.38  E-value=2.3e-12  Score=68.09  Aligned_cols=74  Identities=20%  Similarity=0.242  Sum_probs=56.0

Q ss_pred             eEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC-Cce
Q psy9150           7 YEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY-NVD   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~-g~~   84 (97)
                      ..+.+|+.+.|.|.+.+. |.+.+.|++++..+....             ....|.|..+..+|.|.|.|.+.|.. +..
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~  164 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------------HNSDFYIPKATLKDSGSYFCRGLVGSKNVS  164 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-------------CCceEEECcCCcccCEEEEEEEEeCCCcee
Confidence            457789999999999665 568899999998753211             13479999999999999999999954 444


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       165 s~~~~l~V~  173 (204)
T 3sgj_C          165 SETVQITIT  173 (204)
T ss_dssp             CCCEEEEEE
T ss_pred             cCcEEEEEe
Confidence            555555553

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.38  E-value=2.9e-12  Score=65.54  Aligned_cols=72  Identities=22%  Similarity=0.451  Sum_probs=55.5

Q ss_pred             eEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc-e
Q psy9150           7 YEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV-D   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~-~   84 (97)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....             ...|.|..+...|.|.|.|.+.|..|. .
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  161 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL-------------DPTFSIPQANHSHSGDYHCTGNIGYTLFS  161 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESS-------------CCEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCC-------------CCeEEEEeccccCCEEEEEEEEeCcCccc
Confidence            456789999999999 4556689999999987642110             346999999999999999999999886 3


Q ss_pred             eEEEEEE
Q psy9150          85 TRTFKTD   91 (97)
Q Consensus        85 ~~~~~~~   91 (97)
                      ...+.|.
T Consensus       162 s~~~~l~  168 (170)
T 3ry4_A          162 SKPVTIT  168 (170)
T ss_dssp             CCCEEEE
T ss_pred             cccEEEE
Confidence            4445444

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.37  E-value=8.5e-13  Score=69.46  Aligned_cols=77  Identities=18%  Similarity=0.299  Sum_probs=58.6

Q ss_pred             EEEcCCeEEEEEEe-cccCCCeeEEEeCC--EEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           8 EYVLGHKIVFICMA-KGKPRPHITWFKDG--VELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         8 ~~~~g~~~~l~c~~-~~~~~p~i~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..|+.+.|.|.+ .+.|.|.+.|++++  ..+.......         .....|.|..+..+|.|.|.|.+.|..|..
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  202 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE---------MTSPVISVKNASSEYSGTYSCTVQNRVGSD  202 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGG---------TTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceec---------cCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence            35678999999999 89999999999943  3332211110         013379999999999999999999999998


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       203 ~~~~~l~V~  211 (214)
T 3jz7_A          203 QCMLRLDVV  211 (214)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEEEEEe
Confidence            887776653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.37  E-value=6.2e-12  Score=65.82  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=56.9

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc--ee
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV--DT   85 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~--~~   85 (97)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++..+.......      ........|.|..++..|.|.|.|.+.|..|.  ..
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS   87 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC------CSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc------ccCCceEEEEeccCCcccCceEEEEEeCCCcccCCC
Confidence            6788999999999988 778999999987664321100      11122568999999999999999999998872  23


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.+
T Consensus        88 ~~~~l~V   94 (196)
T 3p2t_A           88 DPLELVM   94 (196)
T ss_dssp             CCEEEEE
T ss_pred             ccEEEEe
Confidence            3444443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.37  E-value=5.9e-12  Score=65.19  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=53.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+......+...   ..   ..+|.|..+...|.|.|.|.+.+..+.
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~   82 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LA---NNNLQILNINKSDEGIYRCEGRVEARG   82 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEE---CT---TSCEEETTCCGGGCEEEEEEEEETTTT
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEE---ec---CCCEEEeeCCHhHCcEEEEEEEEcCCC
Confidence            456788999999999999999999999999887765322111110   01   236999999999999999999988754


Q ss_pred             e
Q psy9150          84 D   84 (97)
Q Consensus        84 ~   84 (97)
                      .
T Consensus        83 ~   83 (189)
T 2v5t_A           83 E   83 (189)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.37  E-value=2.7e-11  Score=60.42  Aligned_cols=89  Identities=11%  Similarity=0.206  Sum_probs=58.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccC---CCeeEEEeCCEE--cc--c-------------cceeeEEEEEecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP---RPHITWFKDGVE--LY--T-------------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~~~~--~~--~-------------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +...+.+..|+.+.|.|.+.+.+   .+.+.|++++..  +.  .             ..+..+.  .........+|.|
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~I   89 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL--KESIGEGKVALRI   89 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEE--CTTGGGTEEEEEE
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEc--cccccCCeEEEEE
Confidence            44567899999999999987544   367999996531  10  0             0111110  0000112458999


Q ss_pred             ccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          63 DPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .+++.+|.|.|.|.+.+..+.....+.|.|.
T Consensus        90 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           90 QNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCHHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            9999999999999999988876666666654

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.37  E-value=4.7e-11  Score=57.00  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             eeeEEEcCCeEEEEEEec-ccCCCeeEEEeCC----EEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAK-GKPRPHITWFKDG----VELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +...+..|+.+.|.|.+. ..+.|++.|.+.+    ..+.......... .-........|.+..+...|+|.|.|.+.+
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w-~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~  100 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSW-EENRSVPVFVLHFKPIHLSDNGSYSCSTNF  100 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEE-ECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecce-eccCCceeEEEEEeeEEEcCCccEEEEeeC
Confidence            355788999999999994 4689999999854    2332111100100 002223356899999999999999999999


Q ss_pred             CCCceeE-EEEEEE
Q psy9150          80 MYNVDTR-TFKTDF   92 (97)
Q Consensus        80 ~~g~~~~-~~~~~~   92 (97)
                      ..|.... ...+.|
T Consensus       101 ~~g~ieSHs~ti~V  114 (122)
T 1xau_A          101 NSQVINSHSVTIHV  114 (122)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCceeeeEEEEEE
Confidence            9887643 444333

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.37  E-value=3.9e-12  Score=67.32  Aligned_cols=89  Identities=22%  Similarity=0.347  Sum_probs=61.4

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... ..........+.|..++..|.|.|.|.+.|..|.
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~   94 (217)
T 2vr9_A           16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV-QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ   94 (217)
T ss_dssp             CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEE-ECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEE
T ss_pred             CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeE-EecCCceEEEEEeccCCcccCceEEEEEecCCCc
Confidence            346778899999999999999999999999998876532111100 1122222223467888999999999999998886


Q ss_pred             e-eEEEEEEEE
Q psy9150          84 D-TRTFKTDFS   93 (97)
Q Consensus        84 ~-~~~~~~~~~   93 (97)
                      . .....+.+.
T Consensus        95 ~~~~~~~l~v~  105 (217)
T 2vr9_A           95 AVSRHASLQIA  105 (217)
T ss_dssp             EECCCEEEEEC
T ss_pred             cccccceEEEE
Confidence            5 234444443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.36  E-value=5.4e-12  Score=65.02  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             eEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc-e
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV-D   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~-~   84 (97)
                      ..+.+|+.+.|.|.+.+.+++ .+.|++++..+....             ....|.|..+..+|.|.|.|.+.|..+. .
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~  164 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------------HNSDFHIPKATLKDSGSYFCRGLVGSKNVS  164 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCC-------------CCCEEEEcccChhhCeEEEEEEEcCCCCcc
Confidence            457789999999999877654 899999998763211             1347999999999999999999997654 3


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      ...+.|.|
T Consensus       165 s~~~~l~V  172 (175)
T 1fnl_A          165 SETVNITI  172 (175)
T ss_dssp             CCCEEEEE
T ss_pred             CccEEEEE
Confidence            44554444

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.36  E-value=2.6e-11  Score=63.57  Aligned_cols=71  Identities=14%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+.+|+.+.|.|.+.+. .+.+.|++++..+...... ...    ........|.|..+..+|.|.|.|.+.|..+
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPH----ARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC----------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccccc----CCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            467789999999999887 7899999998876432111 000    0111246899999999999999999999876

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.36  E-value=2.1e-11  Score=64.90  Aligned_cols=78  Identities=17%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+.+..|+.+.|.|.+ +.|.|  .|.|.+....+   .....       ......|.|.+++.+|.|.|.|.+.|..+.
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~   84 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS-------DTGRSVLTVRNASLSAAGTRVCVGSCGGRT   84 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE-------ESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe-------cCCccEEEECccCcccCceEEEEEEeCCCc
Confidence            4789999999999999 88888  99999854333   11111       011467999999999999999999999888


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ..+.+.|.|..
T Consensus        85 ~~~~~~ltV~~   95 (210)
T 1gsm_A           85 FQHTVQLLVYA   95 (210)
T ss_dssp             EEEEEEEEEEB
T ss_pred             eEEEEEEEEEe
Confidence            77777776643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.35  E-value=7.1e-11  Score=69.65  Aligned_cols=86  Identities=19%  Similarity=0.297  Sum_probs=63.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEc--cccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVEL--YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ....+..|+.+.|.|.+.+.|.|. +.|++++..+  .........  ..........|.|..+...|.|.|.|.+.|..
T Consensus       219 ~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  296 (524)
T 2ec8_A          219 ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFMCYANNTF  296 (524)
T ss_dssp             SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEEEEEECSS
T ss_pred             CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEEEEEEecC
Confidence            345788999999999999988887 9999988773  221111110  00012235689999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.|.+
T Consensus       297 g~~~~~~~l~V  307 (524)
T 2ec8_A          297 GSANVTTTLEV  307 (524)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CceEEEEEEEE
Confidence            98877776665

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.35  E-value=1.6e-11  Score=65.11  Aligned_cols=83  Identities=14%  Similarity=0.247  Sum_probs=58.4

Q ss_pred             EEEcCCeEEEEEEe-cccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           8 EYVLGHKIVFICMA-KGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         8 ~~~~g~~~~l~c~~-~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .+..|+.+.|.|.+ .+.|.|.+.|++ ++..+........   ..........+.+..+...|.|.|.|.+.|..|...
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~  197 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQ---MANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD  197 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEE---EECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeE---EcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence            45678999999999 888999999998 5544432221111   112222234577888899999999999999999988


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.+.
T Consensus       198 ~~~~l~V~  205 (222)
T 4i0k_A          198 AHGSVTIT  205 (222)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEEEe
Confidence            88777653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.35  E-value=3.3e-11  Score=63.90  Aligned_cols=83  Identities=11%  Similarity=0.156  Sum_probs=54.3

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      .+..|+.+.|.|.+.|.|.|.+.|+++ +..+..........   .............+...|.|.|+|.+.|..|....
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~  203 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK---REEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENH  203 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC-------CEEEEEEEEEECCTTCEEEEEEEETTTTEEE
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEc---CCCCCEEEEEEEEEeccCCcEEEEEEEeCccceee
Confidence            556789999999999999999999998 65554322111100   00000111122233467899999999999999888


Q ss_pred             EEEEEEE
Q psy9150          87 TFKTDFS   93 (97)
Q Consensus        87 ~~~~~~~   93 (97)
                      ...|.+.
T Consensus       204 ~~~l~v~  210 (222)
T 3sbw_C          204 TAELVIP  210 (222)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            7776653

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.35  E-value=7e-12  Score=64.61  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=56.3

Q ss_pred             eEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc-e
Q psy9150           7 YEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV-D   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~-~   84 (97)
                      ..+..|+.+.|.|.+ .+.|.+.+.|+++|..+.....             ...|.|..+..+|.|.|.|.+.|..+. .
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~  161 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------------NHNISITNATVEDSGTYYCTGKVWQLDYE  161 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------------SSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecC-------------CCeEEECCCCcccCEEEEEEEEeCCcceE
Confidence            456789999999999 4666779999999987743211             347999999999999999999997543 3


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.+.
T Consensus       162 s~~~~l~V~  170 (176)
T 1f2q_A          162 SEPLNITVI  170 (176)
T ss_dssp             CCCEEEEEE
T ss_pred             ecCEEEEEe
Confidence            444555553

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.35  E-value=3.3e-12  Score=71.41  Aligned_cols=90  Identities=23%  Similarity=0.329  Sum_probs=64.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEe----CCEEcccccee--eEEEEE--ecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFK----DGVELYTHMYV--NLHEWH--YGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~----~~~~~~~~~~~--~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++    +|..+......  ......  .........|.|..+...|.|.|.|.
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  309 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL  309 (334)
T ss_dssp             CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred             CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence            45678899999999999999999999999    56555432211  100000  00001123799999999999999999


Q ss_pred             EEcCCCceeEEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~~   94 (97)
                      +.|..|.....+.|.|..
T Consensus       310 a~N~~G~~~~~~~l~V~~  327 (334)
T 1ry7_B          310 AGNSIGFSHHSAWLVVLP  327 (334)
T ss_dssp             EEESSCCEEEEEEEEEEC
T ss_pred             EeCCCCeEEEEEEEEEEE
Confidence            999999998888777754

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.34  E-value=5.8e-12  Score=65.97  Aligned_cols=72  Identities=10%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+.+|+.+.|.|.+.+.| +.+.|++++..+........   ..........|.|..++.+|.|.|.|.+.|..+
T Consensus       109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ---LTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             --------CEEEEEESSCC-SEEEEEEC---CCEEEEECE---ECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc---cccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            3567899999999999988 89999999987643211100   011122346899999999999999999998765

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.34  E-value=3.2e-11  Score=71.84  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             eeeEEEcCCeEEEEEEec----ccCCCeeEEEeCCEEccccceee--EEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAK----GKPRPHITWFKDGVELYTHMYVN--LHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~----~~~~p~i~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ....+..|+.+.|.|.+.    +.|.|.+.|+++|..+.......  ..............|.|..+..+|.|.|.|.+.
T Consensus       450 ~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  529 (585)
T 2ocw_A          450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK  529 (585)
T ss_pred             CceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeE
Confidence            456788999999999986    67888999999998764322100  000001112224589999999999999999999


Q ss_pred             cCCCceeE-EEEEEEE
Q psy9150          79 NMYNVDTR-TFKTDFS   93 (97)
Q Consensus        79 ~~~g~~~~-~~~~~~~   93 (97)
                      |..|.... .+.|.|.
T Consensus       530 N~~G~~~~~~~~l~V~  545 (585)
T 2ocw_A          530 QGHFYGETAAVYVAVE  545 (585)
T ss_pred             eCCCccEEEEEEEEEE
Confidence            99986554 3666554

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.34  E-value=1.5e-11  Score=69.58  Aligned_cols=90  Identities=8%  Similarity=-0.075  Sum_probs=64.2

Q ss_pred             eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEccc--------cceeeEEEEEec-----CceEEEEEEEccCC
Q psy9150           5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYT--------HMYVNLHEWHYG-----TDRIKSKIEIDPAT   66 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~l~i~~~~   66 (97)
                      ..+.+.+|+.+.|.|.+.+     .|.|.+.|+++|..+..        ............     .......|.|..+.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            4566788999999998877     78899999999877654        222211110000     01112379999999


Q ss_pred             CCCCEEEEEEEEcC--CCceeEEEEEEEEE
Q psy9150          67 QMDAGIYECYADNM--YNVDTRTFKTDFSI   94 (97)
Q Consensus        67 ~~~~g~y~c~~~~~--~g~~~~~~~~~~~~   94 (97)
                      ..|.|.|.|.+.|.  .|.....+.|.+..
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~  293 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNLVVMR  293 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeEEEEE
Confidence            99999999999999  89887777776653

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.33  E-value=1.2e-10  Score=63.88  Aligned_cols=85  Identities=25%  Similarity=0.414  Sum_probs=61.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-CCeeEEEe-CCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-RPHITWFK-DGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +.+..+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+... .+.....    .......|.|..+...|.|.|.|.+.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G~Y~C~~~n~   84 (291)
T 1qz1_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW----NDDDSSTLTIYNANIDDAGIYKCVVTAE   84 (291)
T ss_dssp             SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEE----EETTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEE----cCCCeEEEEEecCCCCCCEEEEEEEEcC
Confidence            4566789999999999998876 68999999 77766532 2222211    0112458999999999999999999998


Q ss_pred             CCc-eeEEEEEEE
Q psy9150          81 YNV-DTRTFKTDF   92 (97)
Q Consensus        81 ~g~-~~~~~~~~~   92 (97)
                      .|. ....+.|.+
T Consensus        85 ~g~~~~~~~~l~v   97 (291)
T 1qz1_A           85 DGTQSEATVNVKI   97 (291)
T ss_dssp             TSCEEEEEEEEEE
T ss_pred             CCCeeEEEEEEEe
Confidence            864 344554443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.33  E-value=6.2e-11  Score=62.36  Aligned_cols=76  Identities=13%  Similarity=0.070  Sum_probs=57.2

Q ss_pred             EcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          10 VLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      ..++.+.|.|.+.+. |.+.+.|++++..+....+......     .....|.|..+...|.|.|.|.+.|..+.....+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~   89 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT-----GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV   89 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEE-----TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEe-----CCEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence            356778888888774 5889999999998876554433211     1135699999999999999999999888766655


Q ss_pred             EE
Q psy9150          89 KT   90 (97)
Q Consensus        89 ~~   90 (97)
                      .+
T Consensus        90 ~l   91 (212)
T 2r15_A           90 DL   91 (212)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.33  E-value=2e-12  Score=72.31  Aligned_cols=84  Identities=21%  Similarity=0.409  Sum_probs=64.1

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+.........    .......+|.|..+...|.|.|.|.+.|..|...
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  207 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI----KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR  207 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCC----CCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccce----ecccceEEEEECCCCcccCEEEEEEEEeCCCCEE
Confidence            356788999999999999999999999998877643321100    0011134799999999999999999999998877


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.+.
T Consensus       208 ~~~~l~V~  215 (334)
T 1ry7_B          208 QTYTLDVL  215 (334)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            77766664

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.33  E-value=2.3e-11  Score=64.26  Aligned_cols=65  Identities=23%  Similarity=0.365  Sum_probs=53.3

Q ss_pred             eeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+.|.+. +.|++++..+....               ..|.|..++..|.|.|.|.+.|.....
T Consensus        16 ~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------------~~L~i~~v~~~D~G~Y~C~a~n~~~s~   80 (204)
T 3sgj_C           16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------------SSYFIDAATVDDSGEYRCQTQLSTLSD   80 (204)
T ss_dssp             CSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------------SEEEESSCCGGGCEEEEEEETTSBCCC
T ss_pred             CeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------------cEEEEecccccCCEEEEEEeCCCcccc
Confidence            35788999999999999988776 99999998775432               478999999999999999998754433


Q ss_pred             e
Q psy9150          85 T   85 (97)
Q Consensus        85 ~   85 (97)
                      .
T Consensus        81 ~   81 (204)
T 3sgj_C           81 P   81 (204)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.33  E-value=1.4e-11  Score=60.71  Aligned_cols=90  Identities=14%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC---CeeEEEeCCEEcc-----------cc--cee--eEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR---PHITWFKDGVELY-----------TH--MYV--NLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~---p~i~w~~~~~~~~-----------~~--~~~--~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +...+....|+.+.|.|.+...+.   ..+.|++++....           ..  ..+  +.............+|.|.+
T Consensus        11 ~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~   90 (125)
T 4gos_A           11 TTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKN   90 (125)
T ss_dssp             EEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESS
T ss_pred             cCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECC
Confidence            345677889999999999864333   2589998542110           00  000  00000000011134799999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      ++.+|.|.|.|.+.+..|.....+.|.|
T Consensus        91 v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           91 VQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            9999999999999999998888777765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.33  E-value=2.3e-11  Score=69.06  Aligned_cols=78  Identities=26%  Similarity=0.368  Sum_probs=62.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+..|+.+.|.|.+.+.|.|.+.|++++..+.....           .....|.|..+...|.|.|.|.+.|..|..
T Consensus       215 ~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-----------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  283 (382)
T 1cs6_A          215 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL-----------SSEPLLHIQNVDFEDEGTYECEAENIKGRD  283 (382)
T ss_dssp             SEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS-----------BSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEEe-----------cCCcEEEEccCChhhCEEEEEEEEcCCCeE
Confidence            356788899999999999999999999998766543110           113479999999999999999999999987


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.+.
T Consensus       284 ~~~~~l~V~  292 (382)
T 1cs6_A          284 TYQGRIIIH  292 (382)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            777766654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.33  E-value=9.1e-12  Score=60.75  Aligned_cols=89  Identities=15%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC----CeeEEEeCC-------EEccc--------------cceeeEEEEEecCceEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR----PHITWFKDG-------VELYT--------------HMYVNLHEWHYGTDRIK   57 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~----p~i~w~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~   57 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.    +.+.|++.+       ..+..              ..+....  ........
T Consensus        11 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~   88 (126)
T 1eaj_A           11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT--SNDLKSGD   88 (126)
T ss_dssp             SEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEEC--CSCGGGTB
T ss_pred             CCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEE--cccccCCe
Confidence            446778999999999999976554    349999843       22110              0011110  00001113


Q ss_pred             EEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        58 ~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .+|.|.+++..|.|.|.|.+.+..+.....+.|.|.
T Consensus        89 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  124 (126)
T 1eaj_A           89 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  124 (126)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence            569999999999999999999988876766666654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.32  E-value=4.2e-11  Score=71.17  Aligned_cols=86  Identities=13%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             ceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecC-ceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGT-DRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.+..+..|+.+.|.|.+. +.|.|.+.|++++..+............... .....+|.|..+...|.|.|.|.+.|. 
T Consensus       234 p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-  312 (527)
T 3qs9_E          234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-  312 (527)
T ss_dssp             CCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-
T ss_pred             CCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-
Confidence            4567788999999999996 8999999999999877654332221111011 112456999999999999999999987 


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                        ....+.|.+
T Consensus       313 --~~~~~~L~V  321 (527)
T 3qs9_E          313 --PSQSALVTI  321 (527)
T ss_dssp             --EEEEEEEEE
T ss_pred             --CCceEEEEE
Confidence              444444443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.32  E-value=1.4e-12  Score=68.05  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             EcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ..|+.+.|.|.+   |.|.+.|+++|..+.....            ....|.|..+...|.|.|+|.+.|..|..
T Consensus       120 ~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          120 RGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA------------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEETTEECCCSSC------------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCCeEEEEeeC---CCCeEEEEECCEECcccCC------------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            389999999988   7899999999998763221            13468889999999999999999998866

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.32  E-value=9.1e-12  Score=60.23  Aligned_cols=90  Identities=12%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             eeeEEEcCCeEEEEEEe-cccCCCe----eEEEeCCEEccc-------------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           5 FDYEYVLGHKIVFICMA-KGKPRPH----ITWFKDGVELYT-------------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~-~~~~~p~----i~w~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+.+|+.+.|.|.+ .+.+.+.    +.|++++.....             ..+...............+|.|.+++
T Consensus         8 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~   87 (118)
T 3udw_C            8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCC
T ss_pred             CeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecC
Confidence            34889999999999999 4444443    999997432110             01111100000000014579999999


Q ss_pred             CCCCEEEEEEEEc-CCCceeEEEEEEEEE
Q psy9150          67 QMDAGIYECYADN-MYNVDTRTFKTDFSI   94 (97)
Q Consensus        67 ~~~~g~y~c~~~~-~~g~~~~~~~~~~~~   94 (97)
                      .+|.|.|.|.+.+ ..+.....+.|.|.+
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~  116 (118)
T 3udw_C           88 VEDEGNYTCLFVTFPQGSRSVDIWLRVLA  116 (118)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hHHCeEEEEEEEECCCCCccceEEEEEEe
Confidence            9999999999998 677777777776653

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.32  E-value=4.6e-12  Score=69.01  Aligned_cols=71  Identities=21%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....                .+  ..+..+|.|.|.|.+.|..|..
T Consensus       193 ~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g----------------~~--~~v~~~d~G~Y~C~a~N~~G~~  254 (265)
T 2oz4_A          193 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------------ES--VTVTRDLEGTYLCRARSTQGEV  254 (265)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT----------------SC--EECCGGGCEEEEEEEEETTEEE
T ss_pred             CccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCC----------------cE--EEeehhhCeEEEEEEECCCCcE
Confidence            35678899999999999999999999999886221111                11  1367799999999999999998


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       255 ~~~~~l~V~  263 (265)
T 2oz4_A          255 TREVTVNVL  263 (265)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            888777653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.31  E-value=2.9e-11  Score=62.31  Aligned_cols=68  Identities=22%  Similarity=0.360  Sum_probs=54.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+.|.+. +.|++++..+...               ...|.|..+...|.|.|.|.+.|..+..
T Consensus        16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~---------------~~~L~i~~~~~~d~G~Y~C~~~n~~~s~   80 (175)
T 1fnl_A           16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------------ASSYFIDAATVNDSGEYRCQTNLSTLSD   80 (175)
T ss_dssp             CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS---------------CSEEEESSCCGGGCEEEEEECSSSCCCC
T ss_pred             ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC---------------ceEEEEeCCCcccCEEEEEEeeCCcccc
Confidence            34788999999999999988776 8899999876532               2479999999999999999998865544


Q ss_pred             eEEE
Q psy9150          85 TRTF   88 (97)
Q Consensus        85 ~~~~   88 (97)
                      ...+
T Consensus        81 ~~~l   84 (175)
T 1fnl_A           81 PVQL   84 (175)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            3333

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.31  E-value=3.4e-11  Score=63.55  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=54.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++ .+.+.+|+.+.|.|.+.+.+.+.+.|++  ++....            ...++....     .....+|.|.+++.+
T Consensus         7 ~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            7 PP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-----SGNMATLTISKAQAG   80 (213)
T ss_dssp             CS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-----cCCEEEEEECCCChh
Confidence            44 7889999999999999999999999998  222111            011221110     112457999999999


Q ss_pred             CCEEEEEEEEcCCC
Q psy9150          69 DAGIYECYADNMYN   82 (97)
Q Consensus        69 ~~g~y~c~~~~~~g   82 (97)
                      |.|.|.|.+.+..+
T Consensus        81 D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           81 DEADYYCQSWDGTN   94 (213)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             hCEEEEEEeccCCc
Confidence            99999999999887

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.31  E-value=1.4e-11  Score=64.49  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+.+|+.+.|.|.+.+.+. .+.|++++..+......      .........|.|..+...|.|.|.|.+.|..|.
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN------PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGW   83 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC------CCSSTTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc------ccCCccccEEEeccCChhHCeEEEEEEeCCCCc
Confidence            6789999999999988655 89999998766431110      001112567999999999999999999988764

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.31  E-value=2.8e-11  Score=68.07  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             eeeEEEcCCeEEEEEEe-----cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMA-----KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~-----~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ....+..|+.+.|.|.+     .+.|.|.+.|++++..+.........         ...|.|..+..+|.|.|.|.+.|
T Consensus       128 ~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n  198 (349)
T 4dep_C          128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE---------GMNLSFLIALISNNGNYTCVVTY  198 (349)
T ss_dssp             EEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEE---------TTEEEEESCCGGGCEEEEEEEEE
T ss_pred             cceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeec---------CCEEEEeeeeecCCcEEEEEEEE
Confidence            35567789999999985     67899999999999988643222111         24799999999999999999999


Q ss_pred             CC-Cce---eEEEEEEE
Q psy9150          80 MY-NVD---TRTFKTDF   92 (97)
Q Consensus        80 ~~-g~~---~~~~~~~~   92 (97)
                      .. |..   ...+.|.+
T Consensus       199 ~~~g~~~~~~~~~~l~v  215 (349)
T 4dep_C          199 PENGRTFHLTRTLTVKV  215 (349)
T ss_dssp             EETTEEEEEEEEEEEEE
T ss_pred             eeCCEEEEEEEEEEEEE
Confidence            87 443   34444443

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.31  E-value=2.5e-11  Score=58.71  Aligned_cols=90  Identities=16%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             CCceeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEE--------cccc---------ceeeEEEEEecCceEEEEEEEc
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVE--------LYTH---------MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~--------~~~~---------~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      .++..+.+.+|+.+.|.|.... ...+.+.|++....        +...         .++.+   .........+|.|.
T Consensus         2 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~sL~I~   78 (116)
T 2or8_A            2 DSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNL---KGHISEGDVSLTIE   78 (116)
T ss_dssp             CCCEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEEC---CSCGGGTBCCEEES
T ss_pred             CCcceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEE---ecCCCCCeEEEEEC
Confidence            4677889999999999999865 34567999986421        0000         00000   00001123479999


Q ss_pred             cCCCCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150          64 PATQMDAGIYECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      +++.+|+|.|.|.+.+..+.......+.+.+
T Consensus        79 ~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V  109 (116)
T 2or8_A           79 NSVESDSGLYCCRVEIPGWFNDQKVTFSLQV  109 (116)
T ss_dssp             SCCGGGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             CCCcccCEEEEEEEEcCCcccccEEEEEEEE
Confidence            9999999999999988754432233344443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.30  E-value=1.1e-12  Score=68.87  Aligned_cols=81  Identities=27%  Similarity=0.514  Sum_probs=58.2

Q ss_pred             eEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEE--EEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           7 YEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLH--EWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+..|+.+.|.|.+ .+.|.|.+.|++++..+.........  ............|.|..+...|.|.|.|.+.|..|.
T Consensus       117 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  196 (209)
T 1nbq_A          117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT  196 (209)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCc
Confidence            457889999999996 89999999999998877643211000  000000011357999999999999999999999998


Q ss_pred             eeEE
Q psy9150          84 DTRT   87 (97)
Q Consensus        84 ~~~~   87 (97)
                      ....
T Consensus       197 ~~~s  200 (209)
T 1nbq_A          197 PMTS  200 (209)
T ss_dssp             CEEC
T ss_pred             cccc
Confidence            8433

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.30  E-value=1.6e-11  Score=58.91  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---ccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +..         ..++...     ......+|.|.+++.+
T Consensus         7 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~   81 (108)
T 1jhl_L            7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS-----GSGTDFTLTISSLEPE   81 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----ESSSEEEEEECSCCTT
T ss_pred             cCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEE-----ecCCEEEEEECCCCHH
Confidence            345678999999999999999888999999843  11   110         1111111     1112457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.|..
T Consensus        82 DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           82 DFAMYICQQHNEY   94 (108)
T ss_dssp             CCSEEEEEECSSS
T ss_pred             HCEEEEEEEccCC
Confidence            9999999998864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.30  E-value=8.6e-12  Score=64.55  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             eeeEEEcCCeEEEEEEecc--cCCCeeEEEeCCEEccc----------cceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           5 FDYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYT----------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      ..+.+.+|+.+.|.|...+  .+.+.+.|++++..+..          ..+..+     ..   ..+|.|..++.+|.|.
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~-----~~---~gsL~I~~v~~~D~G~   75 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI-----LA---NGDLKIKNLTRDDSGT   75 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE-----CT---TSCEEESSCCGGGCEE
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE-----CC---CCcEEEcccccccCEE
Confidence            4577889999999995433  55678999999875431          111111     00   2359999999999999


Q ss_pred             EEEEEEcCCCce--eEEEEEEE
Q psy9150          73 YECYADNMYNVD--TRTFKTDF   92 (97)
Q Consensus        73 y~c~~~~~~g~~--~~~~~~~~   92 (97)
                      |.|.+.|..|..  ...+.|.+
T Consensus        76 Y~C~~~n~~g~~~~~~~~~l~V   97 (176)
T 1hng_A           76 YNVTVYSTNGTRILNKALDLRI   97 (176)
T ss_dssp             EEEEEEETTCCEEEEEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEEEEEE
Confidence            999999999886  55555544

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.30  E-value=3.1e-12  Score=67.65  Aligned_cols=73  Identities=15%  Similarity=0.277  Sum_probs=55.3

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccC-CCCCCEEEEEEEEcCCCce-eEE
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPA-TQMDAGIYECYADNMYNVD-TRT   87 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~c~~~~~~g~~-~~~   87 (97)
                      +|+.+.|.|.  +.|.|.+.|++++..+..... .....       ....|.|..+ ...|.|.|.|.+.|..|.. ...
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~  197 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY  197 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCE
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec-------CCCEEEEeeCCccccCEEEEEEeccCCCCceeEE
Confidence            8999999998  788899999999988754311 11110       1347999999 9999999999999999963 455


Q ss_pred             EEEEE
Q psy9150          88 FKTDF   92 (97)
Q Consensus        88 ~~~~~   92 (97)
                      +.|.+
T Consensus       198 l~l~~  202 (204)
T 1sy6_A          198 LYLRA  202 (204)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.30  E-value=4.5e-12  Score=71.04  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             ceeeEEEcCCeEEEEEEec-------ccCCCeeEEEeCCEEcc--ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAK-------GKPRPHITWFKDGVELY--THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~-------~~~~p~i~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      +.++.+.+|+.+.|.|.+.       +.|.+.+.|++++..+.  .....+...       ...+|.|..+...|.|.|.
T Consensus        25 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~   97 (339)
T 3o4o_C           25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-------QDGALWLLPALQEDSGTYV   97 (339)
T ss_dssp             SCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-------ETTEEEESSBCTTCCEEEE
T ss_pred             ceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-------eCCeEEECCCCcccCEEEE
Confidence            3567889999999999997       88999999999887642  221112111       1347999999999999999


Q ss_pred             EEEEcCCCceeEEEEEEEE
Q psy9150          75 CYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        75 c~~~~~~g~~~~~~~~~~~   93 (97)
                      |.+.|..|.....+.|.+.
T Consensus        98 C~~~n~~g~~~~~~~l~V~  116 (339)
T 3o4o_C           98 CTTRNASYCDKMSIELRVF  116 (339)
T ss_dssp             CCEEETTEEEEEEEEEEEE
T ss_pred             EEEECCcceEEEEEEEEEE
Confidence            9999998877777766654

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.30  E-value=1.3e-11  Score=61.44  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEE---cc-ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVE---LY-THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~---~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      +..+.+.+|+.+.|.|.+.+.  +.+.|+++  +..   +. ...++....     ......|.|..++.+|+|.|.|.+
T Consensus        24 p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~-----~~~~~~L~I~~~~~~DsG~Y~C~a   96 (133)
T 3khq_A           24 PRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQ-----NGSVYTLTIQNIQYEDNGIYFCKQ   96 (133)
T ss_dssp             CSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEE-----ETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEc-----CCCEEEEEECCCChHHCEEEEEEE
Confidence            456788999999999999886  88999985  322   11 122333221     112457999999999999999999


Q ss_pred             EcCCC
Q psy9150          78 DNMYN   82 (97)
Q Consensus        78 ~~~~g   82 (97)
                      .|..|
T Consensus        97 ~n~~g  101 (133)
T 3khq_A           97 KCDSA  101 (133)
T ss_dssp             SSCC-
T ss_pred             EeCCC
Confidence            98865

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.30  E-value=2.5e-11  Score=68.29  Aligned_cols=84  Identities=12%  Similarity=0.134  Sum_probs=61.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-----------CeeEEEeCCEEcc----cc---ceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-----------PHITWFKDGVELY----TH---MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-----------p~i~w~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +..++.+.+|+.+.|.|.+.+.|.           +.+.|++++....    ..   ...+..       .....|.|..
T Consensus        13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~i~~   85 (349)
T 4dep_C           13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS-------KEKDVLWFRP   85 (349)
T ss_dssp             CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE-------EETTEEEESS
T ss_pred             eeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEe-------ecCCEEEEcc
Confidence            345788999999999999987554           8999999773211    00   111111       0134799999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ++..|.|.|.|.+.|..+.....+.|.+.
T Consensus        86 ~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~  114 (349)
T 4dep_C           86 TLLNDTGNYTCMLRNTTYCSKVAFPLEVV  114 (349)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CChhhCEEEEEEEecCCceEEEEEEEEEe
Confidence            99999999999999998887777666654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.30  E-value=2.2e-12  Score=66.76  Aligned_cols=63  Identities=8%  Similarity=0.039  Sum_probs=49.5

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      +..+.|.|.+.+.|.|.+.|++++..+.....                +.+..+...|.|.|.|.+.|..|.......|
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~----------------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEESS----------------SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCCCc----------------EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            44588999999999999999999987754322                2233556899999999999999988776544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.30  E-value=4.7e-11  Score=65.53  Aligned_cols=83  Identities=27%  Similarity=0.510  Sum_probs=61.4

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..++.+..|+.+.|.|.+.+.| +.+.|++ ++..+....+.....     ......|.|..+...|.|.|.|.+.|..|
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p-~~v~W~~~~g~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   84 (291)
T 2wim_A           11 LSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAGIYRCQATDAKG   84 (291)
T ss_dssp             CSEEEEETTCCEEEEEEEESCC-SEEECBCTTCCBCCCBTTEEEEE-----ETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             ccceEecCCCcEEEEEEEeCCC-CceEEECCCCcCccCCCcEEEec-----CCCEEEEEEccCCcccCEEEEEEEecccC
Confidence            4567899999999999998876 4899999 676665444433321     11245799999999999999999999888


Q ss_pred             cee-EEEEEEE
Q psy9150          83 VDT-RTFKTDF   92 (97)
Q Consensus        83 ~~~-~~~~~~~   92 (97)
                      ... ..+.+.+
T Consensus        85 ~~~~~~~~l~v   95 (291)
T 2wim_A           85 QTQEATVVLEI   95 (291)
T ss_dssp             CEEEEEEEEEE
T ss_pred             ceEEEEEEEEe
Confidence            753 3444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.30  E-value=4.5e-12  Score=73.83  Aligned_cols=81  Identities=16%  Similarity=0.313  Sum_probs=60.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccc---eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHM---YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +.+..+.+|+.+.+.|.+.  |.|.+.|+++ +..+....   +....    .    ..+|.|..++.+|+|.|+|.+.|
T Consensus       359 ~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~----~----~g~L~i~~v~~~D~G~Y~C~a~N  428 (452)
T 3zyi_A          359 PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVL----N----DGTLNFSHVLLSDTGVYTCMVTN  428 (452)
T ss_dssp             CCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEEC----T----TSCEECSSCCTTCCEEEEEEEEC
T ss_pred             cccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEEC----C----CCeEEEeecCHHHCEEEEEEEEc
Confidence            3567888999999999987  9999999994 44433221   11110    1    24699999999999999999999


Q ss_pred             CCCceeEEEEEEEEE
Q psy9150          80 MYNVDTRTFKTDFSI   94 (97)
Q Consensus        80 ~~g~~~~~~~~~~~~   94 (97)
                      ..|.....+.+.|..
T Consensus       429 ~~G~~~~~~~l~v~~  443 (452)
T 3zyi_A          429 VAGNSNASAYLNVST  443 (452)
T ss_dssp             SSCEEEEEEEEEC--
T ss_pred             CCCcEEEEEEEEEEc
Confidence            999998888777643

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.29  E-value=2.9e-11  Score=68.77  Aligned_cols=79  Identities=23%  Similarity=0.376  Sum_probs=60.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcc------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++....      ...+...         ....|.|..+...|.|.|.|.+.|
T Consensus       221 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n  291 (388)
T 2v5m_A          221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ---------VSGTLIIKDAVVEDSGKYLCVVNN  291 (388)
T ss_dssp             CEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE---------ETTEEEESSCCGGGCEEEEEEEEC
T ss_pred             ceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec---------ccCEEEECcCCHHHCeEEEEEEec
Confidence            3457789999999999999999999999643221      1111111         134799999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy9150          80 MYNVDTRTFKTDFS   93 (97)
Q Consensus        80 ~~g~~~~~~~~~~~   93 (97)
                      ..|.....+.|.+.
T Consensus       292 ~~g~~~~~~~l~V~  305 (388)
T 2v5m_A          292 SVGGESVETVLTVT  305 (388)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEe
Confidence            99988777766654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.29  E-value=7.2e-11  Score=63.87  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=57.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+ .+.|++++..+...               ...|.|..+...|.|.|.|.+.|..+
T Consensus         8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~---------------~~~l~i~~~~~~d~G~Y~C~~~~~~~   72 (262)
T 3rjd_A            8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------------TPSYRITSASVNDSGEYRCQRGLSGR   72 (262)
T ss_dssp             SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC---------------SSEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc---------------CCeEEEecCCcccCeEEEEEEecCCc
Confidence            345678899999999999998888 89999999887542               23688999999999999999988766


Q ss_pred             ceeEEE
Q psy9150          83 VDTRTF   88 (97)
Q Consensus        83 ~~~~~~   88 (97)
                      .....+
T Consensus        73 s~~~~l   78 (262)
T 3rjd_A           73 SDPIQL   78 (262)
T ss_dssp             CCCEEE
T ss_pred             cccEEE
Confidence            554333

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.29  E-value=4.5e-11  Score=71.96  Aligned_cols=66  Identities=26%  Similarity=0.458  Sum_probs=56.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+..                ...|.|..+...|.|.|.|.+.|..|...
T Consensus       390 ~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~----------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  453 (642)
T 1e07_A          390 YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH----------------TQELFISNITEKNSGLYTCQANNSASGHS  453 (642)
T ss_pred             ceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC----------------CceEEEccCChhhCeEEEEEEEcCCCCCc
Confidence            44667899999999999999999999999987643                23688899999999999999999998765


Q ss_pred             EE
Q psy9150          86 RT   87 (97)
Q Consensus        86 ~~   87 (97)
                      ..
T Consensus       454 ~s  455 (642)
T 1e07_A          454 RT  455 (642)
T ss_pred             cc
Confidence            44

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.29  E-value=3.5e-11  Score=66.05  Aligned_cols=82  Identities=15%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             EEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150           9 YVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      +..|+.+.|.|.+.+.|+ +.+.|++++..+.........   .........|.|..+...|.|.|.|.+.|..|.....
T Consensus       198 ~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  274 (292)
T 4dkd_C          198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH---NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS  274 (292)
T ss_dssp             CCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEE---TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEE
T ss_pred             EecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceec---cceeeeEEEEEECccChhcCeEEEEEEecCCCCceeE
Confidence            457999999999988665 457788887765433322111   1111234589999999999999999999999998888


Q ss_pred             EEEEEE
Q psy9150          88 FKTDFS   93 (97)
Q Consensus        88 ~~~~~~   93 (97)
                      +.|.|.
T Consensus       275 ~~l~V~  280 (292)
T 4dkd_C          275 MFFRVV  280 (292)
T ss_dssp             EEECC-
T ss_pred             EEEEEe
Confidence            777654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.29  E-value=1.5e-11  Score=64.68  Aligned_cols=89  Identities=22%  Similarity=0.362  Sum_probs=59.0

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecC-ceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGT-DRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ......... ......+.+..+...|.|.|.|.+.|..
T Consensus        16 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~   95 (212)
T 2v9r_A           16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL   95 (212)
T ss_dssp             CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETT
T ss_pred             CCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCC
Confidence            35678889999999999999999999999999887643210 000000011 1111234455678999999999999988


Q ss_pred             Cce-eEEEEEEE
Q psy9150          82 NVD-TRTFKTDF   92 (97)
Q Consensus        82 g~~-~~~~~~~~   92 (97)
                      |.. ...+.+.+
T Consensus        96 g~~~~~~~~l~V  107 (212)
T 2v9r_A           96 GEAVSHDASLEV  107 (212)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CceeecceEEEE
Confidence            765 33444444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.28  E-value=4.4e-11  Score=62.58  Aligned_cols=70  Identities=16%  Similarity=0.423  Sum_probs=51.9

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+|+.+.|.|.+.+ +++.+.|++++..+.........    ........|.|..++.+|.|.|.|.+.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEH----GAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEE----EEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccc----cccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            4678999999999977 45689999998766543211110    0111246799999999999999999999876

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.28  E-value=3.8e-12  Score=66.81  Aligned_cols=72  Identities=18%  Similarity=0.302  Sum_probs=54.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccc------------cceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ++..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+..            ..+...         ....|.|..+...|.
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~---------~~~~L~i~~~~~~d~   80 (209)
T 1nbq_A           10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF---------LPTGITFKSVTREDT   80 (209)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE---------ETTEEECSCCCTTSC
T ss_pred             CCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe---------eccEEEEeeCCHHHC
Confidence            44567788999999999999989999999986644210            111111         125799999999999


Q ss_pred             EEEEEEEEcCCCc
Q psy9150          71 GIYECYADNMYNV   83 (97)
Q Consensus        71 g~y~c~~~~~~g~   83 (97)
                      |.|.|.+.+..|.
T Consensus        81 G~Y~C~~~~~~g~   93 (209)
T 1nbq_A           81 GTYTCMVSEEGGN   93 (209)
T ss_dssp             SEEEEEEEETTSS
T ss_pred             cEEEEEEecCCCC
Confidence            9999999998663

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.28  E-value=1e-10  Score=61.28  Aligned_cols=78  Identities=17%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             EcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          10 VLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        10 ~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      ..|+.+.|.|.+. +.|.|.+.|+++|..+..... ...  ............+..+...|.|.|.|.+.|..|.....+
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~-~~~--~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~  195 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVS--QDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTF  195 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEE--ECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccc-eEE--ecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEE
Confidence            4577889999994 899999999999988764321 111  111111111112233445789999999999999888766


Q ss_pred             EE
Q psy9150          89 KT   90 (97)
Q Consensus        89 ~~   90 (97)
                      .+
T Consensus       196 ~~  197 (201)
T 1dr9_A          196 NW  197 (201)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.28  E-value=1.7e-11  Score=68.55  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=56.3

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEcccc---------ceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTH---------MYVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      ++..+.+.+|+.+.|.|.+.+. |.+.+.|++++......         .+................|.|..++..|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   88 (327)
T 2wng_A            9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGT   88 (327)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEE
T ss_pred             CCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeE
Confidence            4567889999999999999887 88899999987532110         0111100000001224579999999999999


Q ss_pred             EEEEEEcCCCc
Q psy9150          73 YECYADNMYNV   83 (97)
Q Consensus        73 y~c~~~~~~g~   83 (97)
                      |.|.+.|..+.
T Consensus        89 Y~C~a~n~~~~   99 (327)
T 2wng_A           89 YYCVKFRKGSP   99 (327)
T ss_dssp             EEEEEEESSTT
T ss_pred             EEEEeecCCCc
Confidence            99999998664

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.28  E-value=7.5e-12  Score=72.49  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=57.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....               ..+   .+...|.|.|.|.+.|..|..
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g---------------~~~---~v~~~d~G~Y~C~a~N~~G~~  439 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------------ESV---TVTRDLEGTYLCRARSTQGEV  439 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT---------------SCE---ECCGGGCEEEEEEEEETTEEE
T ss_pred             CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCC---------------CeE---eEehhhCeEEEEEEEeCCCce
Confidence            46688899999999999999999999999887332211               011   467799999999999999999


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.|.|.
T Consensus       440 ~~~~~l~V~  448 (450)
T 1z7z_I          440 TREVTVNVL  448 (450)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            888877664

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.27  E-value=5.3e-11  Score=66.69  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             EEcCCeEEEEEEecccC-CCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC--CCce
Q psy9150           9 YVLGHKIVFICMAKGKP-RPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM--YNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~--~g~~   84 (97)
                      +..|+.+.|.|.+.+.| .|.+.|++++..+.... .+...         ...|.|..+...|.|.|.|.+.|.  .|..
T Consensus       140 ~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~---------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~  210 (329)
T 3oq3_B          140 THDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS---------GQNLIIHNPELEDSGRYDCYVHYDDVRIKN  210 (329)
T ss_dssp             SSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE---------TTEEEECSCCGGGCEEEEEEEEECCTTSSS
T ss_pred             EeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC---------CCEEEEeecChhhCEEEEEEEEecccCCCc
Confidence            34588999999999999 89999999998885322 21111         257999999999999999999987  6554


Q ss_pred             eEE
Q psy9150          85 TRT   87 (97)
Q Consensus        85 ~~~   87 (97)
                      ...
T Consensus       211 ~~~  213 (329)
T 3oq3_B          211 DIV  213 (329)
T ss_dssp             CEE
T ss_pred             eeE
Confidence            433

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.27  E-value=2.9e-10  Score=62.89  Aligned_cols=76  Identities=11%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             eeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..+...   ......+|.|..+...|.|.|.|.+.+..+..
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  192 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN  192 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEE---TTTTEEEEEESCCCGGGCEEEEEEEESSSCEE
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEc---cCCCEEEEEEccCCcccCEeEEEEEEeCCceE
Confidence            67788999999999998 889999999999998876554443211   11123569999999999999999997654443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=68.45  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             EEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.+|+.+.|.|.+.|.+++  .+.|+++|..+.....................|.|..+..+|.|.|.|.+.|..+..
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            3478999999999986544  799999998875432111111000011123568888899999999999999999875

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.27  E-value=1.1e-11  Score=65.41  Aligned_cols=79  Identities=13%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             cCCeEEEEEEecccCC--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          11 LGHKIVFICMAKGKPR--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      .|+.+.|.|.+.+.++  +.+.|+++|..+...................+.|.|..+...|.|.|+|.+.|..+.....+
T Consensus       128 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          128 KTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            5899999999988643  38999999998864321111000001112245689999999999999999999988776655


Q ss_pred             E
Q psy9150          89 K   89 (97)
Q Consensus        89 ~   89 (97)
                      .
T Consensus       208 ~  208 (213)
T 3mj8_L          208 S  208 (213)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.26  E-value=1.2e-10  Score=61.77  Aligned_cols=88  Identities=14%  Similarity=0.206  Sum_probs=58.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-----CeeEEEeCCEEcccc---------------ceeeEEEEEecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-----PHITWFKDGVELYTH---------------MYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-----p~i~w~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +...+.+..|+.+.|.|.+.+.|.     +.+.|++++..+...               .+..+.  .........+|.|
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~--~~~~~~~~~~L~I   84 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL--KDQLSLGNAALQI   84 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEEC--HHHHTTTEEEEEE
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEc--cccccCCEEEEEE
Confidence            566778999999999999877663     379999976333110               011100  0000111457999


Q ss_pred             ccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          63 DPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .+++.+|.|.|.|.+.+ .+.....+.|.|.
T Consensus        85 ~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~  114 (222)
T 3sbw_C           85 TDVKLQDAGVYRCMISY-GGADYKRITVKVN  114 (222)
T ss_dssp             SSCCGGGCEEEEEEEES-SSEEEEEEEEEEE
T ss_pred             cCcccccCeEEEEEEEe-CCCceeEEEEEEE
Confidence            99999999999999998 5555566655553

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.26  E-value=1.8e-11  Score=63.61  Aligned_cols=60  Identities=17%  Similarity=0.086  Sum_probs=49.4

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++....      .     .    ...|.|..++..|.|.|.|.+.|..|.
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~------~-----~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~   77 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY------Q-----D----QAVLFIPAMKRSLAGRYRCSYQNGSLW   77 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTCCE------E-----S----SSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCcccc------C-----c----ccEEEECcCChhhCceEEEEEEcCCCc
Confidence            6789999999999987 788999999876410      0     0    347999999999999999999997763

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.26  E-value=9.5e-11  Score=62.01  Aligned_cols=72  Identities=14%  Similarity=0.249  Sum_probs=51.9

Q ss_pred             eeEEEcCCeEEEEEEeccc-CCCeeEEEeCC--EEcc---c-------------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDG--VELY---T-------------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~--~~~~---~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+.+|+.+.|.|.+.+. +.+.+.|++..  ....   .             ..++....     .....+|.|..++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~   83 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-----SGADRYLSISNIQ   83 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-----ETTEEEEEESSCC
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-----CCceEEEEEccCC
Confidence            7889999999999999998 89999999821  1100   0             00111110     1114579999999


Q ss_pred             CCCCEEEEEEEEcCCC
Q psy9150          67 QMDAGIYECYADNMYN   82 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g   82 (97)
                      .+|.|.|.|.+.+..|
T Consensus        84 ~~D~G~Y~C~~~~~~~   99 (218)
T 3s96_B           84 PEDEAIYICGVGDTIK   99 (218)
T ss_dssp             GGGCEEEEEEEEEEET
T ss_pred             cccCEEEEEEEecCCC
Confidence            9999999999998776

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.26  E-value=1.4e-11  Score=59.25  Aligned_cols=61  Identities=23%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             EEcCCeEEEEEEecccCCC-----eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           9 YVLGHKIVFICMAKGKPRP-----HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p-----~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.+|+.+.|.|...+.+.+     .+.|++++..+....             ....|.|..++..|.|.|.|.+.+..+
T Consensus        19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~~~-------------~~~~l~i~~v~~~dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A           19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSRG-------------LSSEFQIPTASEDHSGSYWCEAATEDN   84 (108)
T ss_dssp             CBTTCCEEEEEEC---------CCEEEEEETTEEEEEEE-------------SCCEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             CCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccCCC-------------cccEEEeCccCcccCeEEEEEEEeCCC
Confidence            5679999999998765444     389999998764210             034799999999999999999998765

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.26  E-value=5.4e-11  Score=62.51  Aligned_cols=89  Identities=16%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccC----CCeeEEEeC----------------CEEccc-----cceeeEEEEEecCceEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP----RPHITWFKD----------------GVELYT-----HMYVNLHEWHYGTDRIK   57 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~----------------~~~~~~-----~~~~~~~~~~~~~~~~~   57 (97)
                      +...+.+.+|+.+.|.|.+.+.+    .+.+.|+++                +..+..     ..+....  ........
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~   83 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT--SNDVKSGD   83 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEES--CSCGGGTB
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEe--ccCccCCc
Confidence            45678899999999999998876    468999883                322221     1111110  00001123


Q ss_pred             EEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        58 ~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .+|.|..++..|.|.|.|.+.+..|.....+.|.+.
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~  119 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL  119 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEE
Confidence            569999999999999999999998877777766664

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.25  E-value=3.8e-11  Score=61.87  Aligned_cols=69  Identities=17%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+.+|+.+.|.|.+.+.+.+ .+.|++++..+...               ...|.|..++..|.|.|.|.+.|..+.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~~~~~s   76 (176)
T 1f2q_A           12 PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------------NSSLNIVNAKFEDSGEYKCQHQQVNES   76 (176)
T ss_dssp             SCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC---------------SSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC---------------ceEEEEeccceecCEEEEEEcCCcccc
Confidence            34578899999999999888775 59999999877532               247899999999999999999886665


Q ss_pred             eeEEE
Q psy9150          84 DTRTF   88 (97)
Q Consensus        84 ~~~~~   88 (97)
                      ....+
T Consensus        77 ~~~~l   81 (176)
T 1f2q_A           77 EPVYL   81 (176)
T ss_dssp             CCEEE
T ss_pred             ccEEE
Confidence            44433

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.25  E-value=6.5e-11  Score=64.04  Aligned_cols=75  Identities=15%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             eeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+....             ....|.|..++..|.|.|.|.+.|..+..
T Consensus        91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~  157 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------------WNSNLTILKTNISHNGTYHCSGMGKHRYT  157 (262)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEEEEEESSSEEE
T ss_pred             CeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC-------------CCCeEEEEECChhhCEEEEEEEeCCCCcc
Confidence            3457789999999999 777888999999998764211             03468999999999999999999998777


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      ...+.+.+.
T Consensus       158 ~~~~~l~V~  166 (262)
T 3rjd_A          158 SAGISVTVK  166 (262)
T ss_dssp             EECEEEEEE
T ss_pred             ccceEEEec
Confidence            776666654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.24  E-value=3.6e-10  Score=60.92  Aligned_cols=76  Identities=12%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe----------------CCEEcccc---ceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK----------------DGVELYTH---MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++                ++......   .++.+...    .....+|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~   82 (246)
T 4dzb_B            7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA----SLTLSTLTVT   82 (246)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE----ETTEEEEEEC
T ss_pred             CCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec----CCCEEEEEEC
Confidence            3457889999999999999998999999998                22111111   12222110    0114579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|.|.|.|.+.+..+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~  101 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGD  101 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSG
T ss_pred             CCCHHHCEEEEEEEecCCC
Confidence            9999999999999987543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.23  E-value=3e-11  Score=62.96  Aligned_cols=76  Identities=17%  Similarity=0.363  Sum_probs=53.6

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC---c
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN---V   83 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g---~   83 (97)
                      ..+.+|+.+.|.|.+.+ +.+.+.|++++..+....  .       .......|.|..++.+|.|.|.|.+.|...   .
T Consensus       108 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~--~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~  177 (188)
T 1oll_A          108 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR--G-------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSF  177 (188)
T ss_dssp             SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE--E-------ECSSEEEEEEEECCGGGCEEEEEECEEETTEECC
T ss_pred             CccccCCEEEEEEEcCC-CCCEEEEEECCccccccc--c-------CCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCC
Confidence            35678999999999866 567899999886554310  0       011146799999999999999999987642   2


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      .+..+.|.|
T Consensus       178 ~S~~~~l~V  186 (188)
T 1oll_A          178 PSEPVKLLV  186 (188)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCcEEEEe
Confidence            344554444

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.23  E-value=3.1e-11  Score=57.67  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=56.7

Q ss_pred             eeeEEEcCCeEEEEEEecccCC---CeeEEEeCCEEc--------ccc---------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR---PHITWFKDGVEL--------YTH---------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~---p~i~w~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+..|+.+.|.|.+.+.+.   ..+.|++.....        ...         .++..   .........+|.|.+
T Consensus         2 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~---~~~~~~~~~sL~I~~   78 (109)
T 2oyp_A            2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL---KGDLNKGDVSLIIKN   78 (109)
T ss_dssp             EEEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEE---CSCGGGTBCCEEECS
T ss_pred             CCEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEE---ccCccCCcEeEEEcc
Confidence            4577889999999999876543   348999854210        000         00000   000011134799999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      ++.+|.|.|.|.+.+..+.....+.|.+.+
T Consensus        79 v~~~D~G~Y~C~v~~~~~~~~~~~~l~V~V  108 (109)
T 2oyp_A           79 VTLDDHGTYCCRIQFPGLMNDKKLELKLDI  108 (109)
T ss_dssp             CCGGGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             CCChhCeEEEEEEEcCCcccceEEEEEEEe
Confidence            999999999999998877666666666553

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.23  E-value=2e-11  Score=64.46  Aligned_cols=67  Identities=13%  Similarity=0.219  Sum_probs=47.6

Q ss_pred             EEcCCeEEEEEEeccc----CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGK----PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~----~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.+|+.+.|.|.+.+.    |.|.+.|++++.......           ....+.|.|..+..+|.|.|+|.+.|..+..
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~-----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~  203 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQV  203 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS-----------CCCSSEEEECCCTTCCSCEEEEEEECC----
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC-----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCc
Confidence            3468899999999764    789999999875432111           1114578899999999999999999987554


Q ss_pred             eE
Q psy9150          85 TR   86 (97)
Q Consensus        85 ~~   86 (97)
                      ..
T Consensus       204 ~~  205 (214)
T 2zg1_A          204 TT  205 (214)
T ss_dssp             CC
T ss_pred             ce
Confidence            33

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.23  E-value=3.6e-11  Score=64.20  Aligned_cols=70  Identities=14%  Similarity=-0.007  Sum_probs=50.6

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEE--EEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS--KIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+|+.+.|.|.+.+ +.+.+.|+++|..+...... .     .......  .|.|..++.+|.|.|.|.+.|..+.
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   89 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-R-----LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR   89 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-E-----CC----CCCEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-c-----CCCCcceeeEEEEcccccccCEEEEEEEEcCCCc
Confidence            36789999999999977 67899999987654321110 0     0011133  7999999999999999999997653

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.23  E-value=9.1e-11  Score=61.92  Aligned_cols=75  Identities=13%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEcc----------c--cceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELY----------T--HMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|+++.  ..+.          .  ..++....     .....+|.|..++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETED   82 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-----CCCEEEEEECCCChhh
Confidence            45778999999999999999988999999732  2110          0  01121110     1113489999999999


Q ss_pred             CEEEEEEEEcCCCc
Q psy9150          70 AGIYECYADNMYNV   83 (97)
Q Consensus        70 ~g~y~c~~~~~~g~   83 (97)
                      .|.|.|.+.+..+.
T Consensus        83 ~G~Y~C~~~~~~~~   96 (213)
T 3d9a_L           83 FGMYFCQQSNSWPY   96 (213)
T ss_dssp             CEEEEEEECSSSSC
T ss_pred             CEEEEEeeecCCcc
Confidence            99999999988764

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.23  E-value=3.4e-11  Score=65.50  Aligned_cols=88  Identities=16%  Similarity=0.234  Sum_probs=60.3

Q ss_pred             ceeeEEEcCCeEEEEEEe---cccCCCeeEEEe-CCEEcccccee-------------------eEEEEEecCceEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMA---KGKPRPHITWFK-DGVELYTHMYV-------------------NLHEWHYGTDRIKSKI   60 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~---~~~~~p~i~w~~-~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l   60 (97)
                      +....+..|+.+.|.|.+   .+.|.|.+.|++ ++.........                   +... ..........|
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~L  203 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL-TGDISRNDGSI  203 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEE-CSCGGGTBCCE
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEe-eccCCCCeEEE
Confidence            346778899999999999   677899999998 33221110000                   0000 00001124579


Q ss_pred             EEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          61 EIDPATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        61 ~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      .|..+...|.|.|.|.+.|..|.....+.|.+
T Consensus       204 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          204 KLQTVKESDQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence            99999999999999999999888877777766

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.23  E-value=1.6e-10  Score=55.77  Aligned_cols=76  Identities=18%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEcc----------ccceeeEEEEEecC-ceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELY----------THMYVNLHEWHYGT-DRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~----------~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~   69 (97)
                      .+..+.+.+|+.+.|.|.+.+.+ +.+.|++..  ....          ...++...   ... .....+|.|.+++.+|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~---~~~~~~~~~~L~I~~v~~~D   82 (113)
T 1h5b_A            7 SPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSA---FDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEE---CCSSSSSEEEEEECSCCGGG
T ss_pred             CCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEE---EccCCCCEEEEEECCCChhh
Confidence            34567899999999999997754 789999732  2110          01111111   011 2235589999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.|..+
T Consensus        83 sG~Y~C~~~n~~~   95 (113)
T 1h5b_A           83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998765

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.22  E-value=3.4e-11  Score=64.26  Aligned_cols=66  Identities=18%  Similarity=0.286  Sum_probs=51.0

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+.+|+.+.|.|...+.+.+.+.|+++|..+.....  .       ......|.|..++.+|.|.|.|.+.|..
T Consensus       115 ~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~--~-------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQ--S-------GEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEE--E-------CSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CccCCCCCEEEEEeCCCCCCCEEEEEECCCccccccc--C-------CCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            4567899999999777778889999999876653210  0       0114579999999999999999999754

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.22  E-value=1.5e-10  Score=55.75  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEeC--CE----EccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFKD--GV----ELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ++..+.+.+|+.+.|.|.+.+.  +.+.+.|++.  +.    .+....++....   .......+|.|.+++.+|.|.|.
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~Y~   82 (111)
T 2ywz_A            6 TPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETV---DKGSKSFSLRISDLRVEDSGTYK   82 (111)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEE---ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEE---eCCCCEEEEEECCCChhcCEEEE
Confidence            4567889999999999999765  4678999984  32    121222232211   11122467999999999999999


Q ss_pred             EEEEc
Q psy9150          75 CYADN   79 (97)
Q Consensus        75 c~~~~   79 (97)
                      |.+.+
T Consensus        83 C~~~~   87 (111)
T 2ywz_A           83 CQADY   87 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99987

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.22  E-value=2.9e-10  Score=58.73  Aligned_cols=63  Identities=25%  Similarity=0.413  Sum_probs=48.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ....+.+|+.+.|.|.+.+.+.|  .+.|++++..+........          ...+.+.  +..|.|.|.|.+.|
T Consensus         6 ~~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~----------~~~l~i~--~~~d~G~Y~C~~~n   70 (184)
T 3b5h_A            6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------KTEFKVD--SDDQWGEYSCVFLP   70 (184)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----------EEEEEEC--GGGCCEEEEEEEES
T ss_pred             EEEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCC----------cEEEEEe--chhhCeEEEEEEEC
Confidence            34567889999999999887777  8999999988765432111          2345555  58899999999998

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.22  E-value=4.3e-11  Score=58.69  Aligned_cols=89  Identities=16%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC---CeeEEEeCCEEcccc------------------ceeeEEEEEecCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR---PHITWFKDGVELYTH------------------MYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~---p~i~w~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~   61 (97)
                      .+..+.+..|+.+.|.|.+.+.+.   ..+.|++........                  .+..+.  .........+|.
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~   83 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQP--PPPRNPLDGSVL   83 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECC--CSSCCTTBCCEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEe--cCCCcCCEEEEE
Confidence            355788999999999999876543   347899843211100                  000000  000011134699


Q ss_pred             EccCCCCCCEEEEEEEEc-CCCceeEEEEEEEE
Q psy9150          62 IDPATQMDAGIYECYADN-MYNVDTRTFKTDFS   93 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~~~~   93 (97)
                      |.+++.+|.|.|.|.+.+ +.|.....+.|.|.
T Consensus        84 I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           84 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVL  116 (123)
T ss_dssp             EESCCSSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred             ECCCChHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence            999999999999998765 56666666666553

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.22  E-value=1.9e-10  Score=62.06  Aligned_cols=72  Identities=14%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+.+.+|+.+.|.|.+.+.+.+.+.|++  ++..+..            ..++..     .......+|.|..++.+|.|
T Consensus       144 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v~~~D~G  218 (247)
T 2ghw_B          144 TLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSG-----SGSGTDFTLTISRLEPEDFA  218 (247)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----ECSSSEEEEEECSCCGGGCE
T ss_pred             EEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEE-----ecCCCeEEEEECcCCHHHCE
Confidence            4567899999999999999989999998  5543310            111111     11122457999999999999


Q ss_pred             EEEEEEEcCCC
Q psy9150          72 IYECYADNMYN   82 (97)
Q Consensus        72 ~y~c~~~~~~g   82 (97)
                      .|.|.+.+...
T Consensus       219 ~Y~C~a~~~~~  229 (247)
T 2ghw_B          219 VYYCQQRSNWP  229 (247)
T ss_dssp             EEEEEECSSSS
T ss_pred             EEEEEEccCCC
Confidence            99999988543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.20  E-value=9.8e-11  Score=63.00  Aligned_cols=81  Identities=17%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             CceeeEEEcCCeEEEEEEecc---cCCCeeEEEeCCEEccccceee----------------EEEEEec--Cce------
Q psy9150           3 SHFDYEYVLGHKIVFICMAKG---KPRPHITWFKDGVELYTHMYVN----------------LHEWHYG--TDR------   55 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~---~~~p~i~w~~~~~~~~~~~~~~----------------~~~~~~~--~~~------   55 (97)
                      +...+.+.+|+.+.|.|.+.+   .+.+.+.|++++..........                .......  ..+      
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   87 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL   87 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC
Confidence            456788999999999999987   7888999999764321000000                0000000  000      


Q ss_pred             EEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          56 IKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        56 ~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ...+|.|..++..|.|.|.|.+.+..+.
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~  115 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIR  115 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCC
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccC
Confidence            0237999999999999999999998764

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.20  E-value=1.5e-10  Score=60.63  Aligned_cols=89  Identities=12%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CceeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEcccc---c-e-eeEEEEEecC--ce----EEEEEEEccCCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTH---M-Y-VNLHEWHYGT--DR----IKSKIEIDPATQMDA   70 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~---~-~-~~~~~~~~~~--~~----~~~~l~i~~~~~~~~   70 (97)
                      .+..+.+.+|+.+.|.|.+.+ .+.+.+.|++++..+...   . . ..... ....  .+    ...+|.|.+++..|.
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHV-TNPKQGKRLNFTQSYSLQLSNLKMEDT   82 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEE-CCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceee-cCccccccEEECCCeEEEECCCCcccC
Confidence            456788999999999999865 455789999987654210   0 0 00000 0000  00    135799999999999


Q ss_pred             EEEEEEEEcCCCceeEEEEEEE
Q psy9150          71 GIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        71 g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      |.|.|.+.+..+.....+.|.|
T Consensus        83 G~Y~C~~~~~~~~~~~~~~L~V  104 (193)
T 2if7_A           83 GSYRAQISTKTSAKLSSYTLRI  104 (193)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEE
T ss_pred             ceEEEEEEecCCCeEEEEEEEE
Confidence            9999999998887666665555

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.20  E-value=2e-10  Score=58.69  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=50.8

Q ss_pred             eeEEEcCCeEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+.| .+.+.|++++..+....               ..+.+..+...|.|.|.|.+.+.....
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~---------------~~~~~~~~~~~d~G~Y~C~~~~~~~s~   77 (170)
T 3ry4_A           13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT---------------QPSYRFKANNNDSGEYTCQTGQTSLSD   77 (170)
T ss_dssp             CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC---------------SSEEEEECCGGGCEEEEEEETTSBCCC
T ss_pred             CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc---------------cceEEEecccccCeEEEEEEeCCCceE
Confidence            45688999999999998876 67899999998876532               124456788999999999998755444


Q ss_pred             e
Q psy9150          85 T   85 (97)
Q Consensus        85 ~   85 (97)
                      .
T Consensus        78 ~   78 (170)
T 3ry4_A           78 P   78 (170)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.20  E-value=2e-10  Score=70.81  Aligned_cols=84  Identities=20%  Similarity=0.335  Sum_probs=63.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+..|+.+.|.|.+.+.+.| .+.|+++|..+..........    .......|.|..+...|.|.|.|.+.|..|..
T Consensus       628 ~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  703 (816)
T 3dmk_A          628 EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR----VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ  703 (816)
T ss_dssp             SSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEE----ETTTEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             ccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEE----cCCCeeEEEEccCChhhCEEEEEEEEeCCccE
Confidence            3457789999999999765555 899999998876543332221    11124579999999999999999999999988


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      .....|.+.
T Consensus       704 ~~~~~l~V~  712 (816)
T 3dmk_A          704 QFTTPLNVY  712 (816)
T ss_dssp             EEEEEECEE
T ss_pred             EEEEEEEEE
Confidence            777766654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.20  E-value=1.2e-10  Score=55.67  Aligned_cols=77  Identities=12%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC----c
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN----V   83 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g----~   83 (97)
                      .+.+|+++.|.|...+. ...+.|++++..+....        .........|.|..++.+|.|.|.|.+.|...    .
T Consensus        15 ~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~~--------~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~   85 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDKE--------KDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSN   85 (105)
T ss_dssp             SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEEE--------ECTTCSEEEEEEECCSGGGCEEEEEEEEEETTEEECC
T ss_pred             CcCcCCCEEEEEEcCCC-CcEEEEEECCccceeee--------ccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCCcccC
Confidence            46789999999999764 46788999987653210        01122246799999999999999999988532    2


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      .+..+.|.|.
T Consensus        86 ~Sdpl~L~V~   95 (105)
T 2vsd_A           86 QSDPVELVLT   95 (105)
T ss_dssp             CCCCEEECCC
T ss_pred             CCCCEEEEEE
Confidence            3445555443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.20  E-value=2.8e-11  Score=62.86  Aligned_cols=65  Identities=15%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+|+.+.|.|.+.+. ++.+.|++++..+.......         .....|.|..+..+|.|.|.|.+.|..+
T Consensus       104 ~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPER---------WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             SSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCE---------EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             eecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCC---------CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            34578999999998764 46899999988765422111         1145688899999999999999999754

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.19  E-value=2.3e-10  Score=55.92  Aligned_cols=74  Identities=15%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEE---cc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVE---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++.  +..   +. .        ..++...     ......+|.|.+++.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~v~~~   81 (120)
T 1mqk_L            7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS-----GSGTQFSLKINSLLPE   81 (120)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEe-----ccCCEEEEEECCCCHH
Confidence            34578899999999999998877888999983  221   11 0        1122211     0111457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        82 DsG~Y~C~~~~~~   94 (120)
T 1mqk_L           82 DFGSYYCQHHYGT   94 (120)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             HCEEEEEEEEeCC
Confidence            9999999998753

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.19  E-value=4.5e-10  Score=53.93  Aligned_cols=89  Identities=13%  Similarity=0.222  Sum_probs=56.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-CCeeEEEeCC--EEcc-----------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-RPHITWFKDG--VELY-----------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|...+.. .+.+.|++..  ....           ...++....   .......+|.|.+++.+|
T Consensus         3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~~~~~D   79 (110)
T 2q87_A            3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD---SPANLSFTVTLENLTEED   79 (110)
T ss_dssp             EEEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEE---EGGGTEEEEEESSCCGGG
T ss_pred             CcEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEE---cCcCCEEEEEEccCCHHH
Confidence            4567899999999999986644 4679999843  1110           001111110   011124579999999999


Q ss_pred             CEEEEEEEEcCC-C-ceeEEEEEEEEEe
Q psy9150          70 AGIYECYADNMY-N-VDTRTFKTDFSIT   95 (97)
Q Consensus        70 ~g~y~c~~~~~~-g-~~~~~~~~~~~~~   95 (97)
                      +|.|.|.+.+.. | .....+.+.+.+.
T Consensus        80 sG~Y~C~~~~~~~g~~~~~~~~v~v~V~  107 (110)
T 2q87_A           80 AGTYWCGVDTPWLQDFHDPVVEVEVSVF  107 (110)
T ss_dssp             CEEEEEEEECTTSCCBCCCSEEEEEEEC
T ss_pred             CEEEEEEEecCccCccCCccEEEEEEEe
Confidence            999999999875 4 1233445555543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.19  E-value=2.6e-10  Score=63.28  Aligned_cols=71  Identities=15%  Similarity=0.330  Sum_probs=56.3

Q ss_pred             eeEEEcCCeEEEEEEe------cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE-
Q psy9150           6 DYEYVLGHKIVFICMA------KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD-   78 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~------~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~-   78 (97)
                      ...+..|+.+.|.|.+      .+.|.|.+.|++++..+...... ...       ....|.|..+...|.|.|.|.+. 
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~-~~~-------~~~~L~i~~v~~~d~G~Y~C~a~~  183 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSG-------VKDRLIVMNVAEKHRGNYTCHASY  183 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSS-EEE-------ETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             ceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccce-Eee-------cCceEEEEeceehhCcEEEEEEEc
Confidence            4567889999999998      88999999999999988543211 110       13479999999999999999999 


Q ss_pred             cCCCce
Q psy9150          79 NMYNVD   84 (97)
Q Consensus        79 ~~~g~~   84 (97)
                      |..|..
T Consensus       184 n~~g~~  189 (315)
T 1itb_B          184 TYLGKQ  189 (315)
T ss_dssp             EETTEE
T ss_pred             CCCCcE
Confidence            777765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.19  E-value=2e-10  Score=66.54  Aligned_cols=70  Identities=9%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..+.+|+.+.|.|.+.+.|++   .+.|++++..+.....        ........|.|..+..+|.|.|.|.+.|..|
T Consensus        95 ~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  166 (450)
T 1z7z_I           95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA--------VGEPAEVTTTVLVRRDHHGANFSCRTELDLR  166 (450)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------CTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             CceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccc--------cccccceEEEEEeeccccCceEEEEEEcccC
Confidence            3567889999999999998888   8999999987753221        1122245899999999999999999999877


Q ss_pred             c
Q psy9150          83 V   83 (97)
Q Consensus        83 ~   83 (97)
                      .
T Consensus       167 ~  167 (450)
T 1z7z_I          167 P  167 (450)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.19  E-value=1.6e-11  Score=64.03  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=57.4

Q ss_pred             CceeeEEEcCCeEEEEEE-ecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           3 SHFDYEYVLGHKIVFICM-AKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~-~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +...+.+.+|+.+.|.|. +.+.|. +.+.|++++..+.........  ....   ...|.|..+...|.|.|.|.+.+.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~--~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF--VSQT---NGNLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEE--ECTT---TCCEEESSCCGGGCEEEEEEEEEG
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeE--EEcC---CCeEEECcCCcccCeEEEEEEEec
Confidence            446788999999999999 888888 999999988766422111110  0011   246999999999999999999987


Q ss_pred             CCcee
Q psy9150          81 YNVDT   85 (97)
Q Consensus        81 ~g~~~   85 (97)
                      .+...
T Consensus        89 ~~~~~   93 (201)
T 3s97_C           89 SITKS   93 (201)
T ss_dssp             GGTEE
T ss_pred             CCCcc
Confidence            65443

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.19  E-value=2.2e-10  Score=54.92  Aligned_cols=74  Identities=14%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--E---Eccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--V---ELYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  .   .+..         ..++..     .......+|.|.+++.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v~~~   81 (108)
T 1qfw_M            7 SPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTG-----SGSATDFTLTISSVQAE   81 (108)
T ss_dssp             ECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEEC-----CBCSSEEEEEESSCCTT
T ss_pred             eCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEE-----EcCCCEEEEEECCCChh
Confidence            345678899999999999988777889999832  1   1110         011111     11122457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        82 DsG~Y~C~~~~~~   94 (108)
T 1qfw_M           82 DFADYHCGQTYNH   94 (108)
T ss_dssp             CCSEEEEEECSSS
T ss_pred             hCEEEEEEEccCC
Confidence            9999999998753

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.19  E-value=3.2e-10  Score=59.76  Aligned_cols=70  Identities=11%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+.+.+|+.+.|.|.+.  +.+.+.|+++  +....            ...++....     .....+|.|.+++.+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-----SGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEEESCCGGGCE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-----cCCEEEEEECCCChhHCE
Confidence            78899999999999998  8889999983  22211            011222110     112457999999999999


Q ss_pred             EEEEEEEcCCC
Q psy9150          72 IYECYADNMYN   82 (97)
Q Consensus        72 ~y~c~~~~~~g   82 (97)
                      .|.|.+.+..+
T Consensus        82 ~Y~C~~~~~~~   92 (211)
T 3tv3_L           82 VYYCGSLVGNW   92 (211)
T ss_dssp             EEEEEEEETTT
T ss_pred             EEEEEEecCCC
Confidence            99999999877

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.19  E-value=2.3e-10  Score=60.87  Aligned_cols=87  Identities=15%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEE-----ccc----cceeeEEEEE----------ecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVE-----LYT----HMYVNLHEWH----------YGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~-----~~~----~~~~~~~~~~----------~~~~~~~~~l~i   62 (97)
                      .+.++.+..|+.+.|.|.+.+.+. +.+.|++++..     +..    ...+.... .          ...   ...|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~---~~~L~i   81 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM-HDTRGRSPPYQLDS---QGRLVL   81 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEE-CCCSCCSSCCEECT---TCCEEE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCcccccc-ccccccccccccCC---CceEEE
Confidence            356788999999999999998885 88999974432     110    00000000 0          011   123999


Q ss_pred             ccCCCCCCEEEEEEEEcCC-CceeEEEEEEEE
Q psy9150          63 DPATQMDAGIYECYADNMY-NVDTRTFKTDFS   93 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~-g~~~~~~~~~~~   93 (97)
                      ..++..|.|.|.|.+.+.. +.....+.|.+.
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~  113 (231)
T 2pet_A           82 AEAQVGDERDYVCVVRAGAAGTAEATARLNVF  113 (231)
T ss_dssp             SSCCGGGCEEEEEEEECGGGCEEEEEEEEEEE
T ss_pred             cccCcccCceEEEEEEecCCCceEEEEEEEEE
Confidence            9999999999999999987 666666666654

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2e-10  Score=57.13  Aligned_cols=80  Identities=20%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEE----cccc-----ceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDGVE----LYTH-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      ++..+.+.+|+.+.|.|.+.+. +.+.+.|++....    +...     .++..............+|.|.+++.+|.|.
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~   93 (136)
T 2d9c_A           14 PEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGT   93 (136)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEE
T ss_pred             cCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEE
Confidence            4567889999999999999765 5678999996521    1100     0000000000001114579999999999999


Q ss_pred             EEEEEEcCCC
Q psy9150          73 YECYADNMYN   82 (97)
Q Consensus        73 y~c~~~~~~g   82 (97)
                      |.|.+.+..+
T Consensus        94 Y~C~~~~~~~  103 (136)
T 2d9c_A           94 YYCVKFRKGS  103 (136)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEeCCC
Confidence            9999887543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.18  E-value=9.8e-11  Score=63.67  Aligned_cols=80  Identities=16%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEccccceee------EE--------EEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELYTHMYVN------LH--------EWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~~~~~~~------~~--------~~~~~~~~~~~~l~i~~~~   66 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++.  +..........      ..        ...........+|.|..++
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   87 (259)
T 3omz_A            8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI   87 (259)
T ss_dssp             ---CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC
T ss_pred             CCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC
Confidence            45678899999999999999988899999982  21110000000      00        0000011123469999999


Q ss_pred             CCCCEEEEEEEEcCCC
Q psy9150          67 QMDAGIYECYADNMYN   82 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g   82 (97)
                      .+|+|.|.|.+.+..+
T Consensus        88 ~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           88 ENDSGVYYCATWDQNY  103 (259)
T ss_dssp             GGGCEEEEEEEECTTS
T ss_pred             cccCEEEEEEEeeCCc
Confidence            9999999999998765

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.18  E-value=1.6e-10  Score=56.43  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---cc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +. .        ..++...     ......+|.|.+++.+
T Consensus         9 ~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~v~~~   83 (119)
T 2e27_L            9 SPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGS-----GSGRDYSFSISNLEPE   83 (119)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEECSCCGG
T ss_pred             cCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEE-----ccCCEEEEEECCCChH
Confidence            345788999999999999988888889999832  11   11 0        1112111     0111457999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |+|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (119)
T 2e27_L           84 DAATYYCLQYDN   95 (119)
T ss_dssp             GCEEEEEEECGG
T ss_pred             HCEEEEEEEccC
Confidence            999999999874

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.18  E-value=8.2e-11  Score=65.94  Aligned_cols=80  Identities=20%  Similarity=0.283  Sum_probs=59.8

Q ss_pred             eeEEEcCCeEEEEEE-----ecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICM-----AKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~-----~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ...+..|+.+.|.|.     +.+.|.+.+.|++++..+.... ....     ...  ...|.|..+...|.|.|.|.+.|
T Consensus       129 ~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~-----~~~--~~~L~i~~v~~~d~G~Y~C~a~n  201 (339)
T 3o4o_C          129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS-----VRG--TTHLLVHDVALEDAGYYRCVLTF  201 (339)
T ss_dssp             EEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE-----CTT--SSEEEESSCCGGGCEEEEEEEEC
T ss_pred             ceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE-----cCC--cceEEEcccCHhhCeEEEEEEEE
Confidence            346788999999999     7888999999999998776442 2211     111  23799999999999999999999


Q ss_pred             CCCc----eeEEEEEEE
Q psy9150          80 MYNV----DTRTFKTDF   92 (97)
Q Consensus        80 ~~g~----~~~~~~~~~   92 (97)
                      ..|.    ....+.|.+
T Consensus       202 ~~g~~~~~~~~~~~l~V  218 (339)
T 3o4o_C          202 AHEGQQYNITRSIELRI  218 (339)
T ss_dssp             CBTTBCCEEEEEEEEEE
T ss_pred             CCCCeEEEEEEEEEEEE
Confidence            8874    344555544

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.18  E-value=2.3e-10  Score=54.96  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--E---Ecc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--V---ELY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  .   .+. .        ..++...     ......+|.|.+++.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~v~~~   83 (109)
T 2q20_A            9 SPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGS-----GSGTDFTFTISSLQPE   83 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             eCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEe-----ccCCEEEEEECCCChh
Confidence            345788999999999999988778889999842  1   111 0        1112111     0111457999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |.|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (109)
T 2q20_A           84 DIATYYCQQYDN   95 (109)
T ss_dssp             GCEEEEEEECSS
T ss_pred             hCEEEEEEEeeC
Confidence            999999999875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.18  E-value=1.7e-10  Score=68.01  Aligned_cols=78  Identities=15%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             EEcCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.+|+.+.|.|.+.|.++    +.+.|++++..+...................+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       331 v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  410 (523)
T 2rcj_C          331 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA  410 (523)
T ss_pred             cccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC
Confidence            567999999999988654    4899999998876433211110000111224568899999999999999999987765


Q ss_pred             eE
Q psy9150          85 TR   86 (97)
Q Consensus        85 ~~   86 (97)
                      ..
T Consensus       411 ~~  412 (523)
T 2rcj_C          411 PI  412 (523)
T ss_pred             ce
Confidence            43

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.18  E-value=1.7e-10  Score=56.16  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             ceeeEEEcCCeEEEEEEecc--cCCCeeEEEeCCEEcccc---ceeeEEEEEecCceE----EEEEEEccCCCCCCEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTH---MYVNLHEWHYGTDRI----KSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~   74 (97)
                      +..+.+..|+.+.|.|...+  .+.+.+.|+++...+...   ...... ... ..+.    ..+|.|.+++.+|.|.|.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~-~~~-~~R~~~~~~~sL~I~~v~~~D~G~Y~   87 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHIS-PSF-KDRVAPGPGLGLTLQSLTVNDTGEYF   87 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECC-GGG-TTTEEECSTTCEEECSCCGGGCEEEE
T ss_pred             cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeC-ccc-cCcEEeCCceEEEEeeCChhhCEEEE
Confidence            34678899999999999876  334468999976543210   000000 000 0000    247999999999999999


Q ss_pred             EEEEc-CCCceeEEEEEEEEE
Q psy9150          75 CYADN-MYNVDTRTFKTDFSI   94 (97)
Q Consensus        75 c~~~~-~~g~~~~~~~~~~~~   94 (97)
                      |.+.. ..|.....+.|.|.+
T Consensus        88 C~v~~~~~g~~~~~~~L~V~~  108 (117)
T 3q0h_A           88 CIYHTYPDGTYTGRIFLEVLE  108 (117)
T ss_dssp             EEEEEETTCCEEEEEEEEEEC
T ss_pred             EEEEECCCCCeEEEEEEEEEc
Confidence            98754 567777767666643

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.17  E-value=1.2e-09  Score=51.72  Aligned_cols=85  Identities=22%  Similarity=0.337  Sum_probs=60.0

Q ss_pred             eeeEEEcCCeEEEEEEecc-cCCCeeEEEe-CC---EEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKG-KPRPHITWFK-DG---VELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +...+..|+.+.|.|++.+ .+.|.+.|-+ ++   ..+..... ...   -........|.+..+-..|+|.|+|.+..
T Consensus        19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q-~w~---E~~N~s~fvLhf~~V~~sDsGsYRCsAn~   94 (120)
T 2aw2_A           19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQT-SWK---EEKNISFFILHFEPVLPNDNGSYRCSANF   94 (120)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCE-EEE---ECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccc-cce---ecCCeeEEEEEEeeeeEcCCcceEEEeeC
Confidence            3457889999999999977 6899999988 43   44443221 111   12233345799999999999999999999


Q ss_pred             CCCcee-EEEEEEEE
Q psy9150          80 MYNVDT-RTFKTDFS   93 (97)
Q Consensus        80 ~~g~~~-~~~~~~~~   93 (97)
                      ..|... ....+.++
T Consensus        95 ~sg~ieSHsvtI~Vt  109 (120)
T 2aw2_A           95 QSNLIESHSTTLYVT  109 (120)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCCcEEeeEEEEEEE
Confidence            988754 44444444

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.17  E-value=5.9e-10  Score=58.56  Aligned_cols=69  Identities=19%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ..+.+|+.+.|.|.+.+ +.+.+.|+++|..+.......    ..........|.|..++..|.|.|.|.+.+.
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~----~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~   85 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIG----EHHDGVSKANFSISRMTQDLAGTYRCYGSVT   85 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEEC----EEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeee----ecCCCCceEEEEeccCCcccCeEEEEeEecC
Confidence            46789999999999974 778999999886553211100    0011123567999999999999999999764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.17  E-value=3.7e-10  Score=58.83  Aligned_cols=68  Identities=13%  Similarity=-0.001  Sum_probs=50.3

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++..+......      .........|.|..++..|.|.|.|.+.|..+
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc------cCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            6889999999999875 45789999999876421100      00112256799999999999999999988654

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.17  E-value=2.6e-10  Score=54.69  Aligned_cols=74  Identities=14%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CE----EccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GV----ELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ++..+.+.+|+.+.|.|.+.+..  .+.+.|+++  +.    .+....++....   .......+|.|.+++.+|+|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~   82 (108)
T 2coq_A            6 TPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETV---DEGSNSASLTIRDLRVEDSGTYK   82 (108)
T ss_dssp             ECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEE---ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEE---cCCCCEEEEEECCCCcccCEEEE
Confidence            45667899999999999997653  567999984  22    111122222211   11122568999999999999999


Q ss_pred             EEEEc
Q psy9150          75 CYADN   79 (97)
Q Consensus        75 c~~~~   79 (97)
                      |.+.+
T Consensus        83 C~~~~   87 (108)
T 2coq_A           83 CKAYR   87 (108)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99887

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.17  E-value=1.8e-10  Score=60.83  Aligned_cols=77  Identities=13%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      .|+.+.|.|.+.+.+++  .+.|+++|..+.......... ....  ....+.|.|.....+|.|.|.|.+.|......+
T Consensus       129 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          129 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPS-KQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE-ECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             cCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCce-eCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            57899999999886544  799999998876542111000 0011  122457888888889999999999998766544


Q ss_pred             EE
Q psy9150          87 TF   88 (97)
Q Consensus        87 ~~   88 (97)
                      .+
T Consensus       208 ~v  209 (212)
T 1q0x_L          208 TL  209 (212)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.17  E-value=2.5e-10  Score=60.24  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEc---c---------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VEL---Y---------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ...   .         ...++...     ......+|.|..++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS-----GSGRDSSFTISSLESED   82 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe-----ccCCEEEEEECCCCccc
Confidence            45678999999999999999889999999822  111   0         01112111     01124579999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.+..+
T Consensus        83 ~G~Y~C~~~~~~~   95 (213)
T 3r06_A           83 IGSYYCQQYYNYP   95 (213)
T ss_dssp             CSEEEEEECSSSS
T ss_pred             CEEEEEecccCCc
Confidence            9999999988754

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.17  E-value=4.3e-10  Score=58.89  Aligned_cols=63  Identities=13%  Similarity=0.196  Sum_probs=45.7

Q ss_pred             cCC-eEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCC-CCCEEEEEEEEcCCCceeEE
Q psy9150          11 LGH-KIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ-MDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        11 ~g~-~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~c~~~~~~g~~~~~   87 (97)
                      .|. .+.|.|.+.+. |.|.+.|++++..+....                .|.+..... .|.|.|+|.+.|..|.....
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~----------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP----------------NLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS----------------EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC----------------eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            344 79999999884 588999999987653221                244433334 37999999999999988665


Q ss_pred             EE
Q psy9150          88 FK   89 (97)
Q Consensus        88 ~~   89 (97)
                      +.
T Consensus       186 ~~  187 (193)
T 2if7_A          186 VS  187 (193)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.17  E-value=1.2e-10  Score=61.96  Aligned_cols=72  Identities=17%  Similarity=0.359  Sum_probs=49.3

Q ss_pred             EEcCCeE-EEEEEe-cccCCCeeEEEeCCEEccccc----eeeEEEEEe--cCc--eEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           9 YVLGHKI-VFICMA-KGKPRPHITWFKDGVELYTHM----YVNLHEWHY--GTD--RIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         9 ~~~g~~~-~l~c~~-~~~~~p~i~w~~~~~~~~~~~----~~~~~~~~~--~~~--~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      +..|..+ .|.|.+ .+.|.|.+.|++++..+....    .........  ...  ...+.|.+......|.|.|.|.+.
T Consensus       130 ~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~  209 (231)
T 2pet_A          130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH  209 (231)
T ss_dssp             TTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             ecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEE
Confidence            3467777 999999 899999999999999886544    222211110  111  113567887666666999999999


Q ss_pred             cC
Q psy9150          79 NM   80 (97)
Q Consensus        79 ~~   80 (97)
                      |.
T Consensus       210 n~  211 (231)
T 2pet_A          210 YS  211 (231)
T ss_dssp             EE
T ss_pred             cC
Confidence            94

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.16  E-value=1.5e-10  Score=62.95  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=56.6

Q ss_pred             CceeeEEEcCCeEEEEEEec---ccCCCeeEEEeCCEEcccccee----------------eEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAK---GKPRPHITWFKDGVELYTHMYV----------------NLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~---~~~~p~i~w~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~i~   63 (97)
                      +...+.+.+|+.+.|.|.+.   +.+.+.+.|++++.........                +... .........+|.|.
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~L~I~   89 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHL-VGDTFHNDGSLLLQ   89 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEE-CSCTTTTBCCEEEC
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEE-eecCCCCEEEEEEC
Confidence            34568899999999999987   6777889999854322111000                0000 00000112579999


Q ss_pred             cCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          64 PATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +++.+|.|.|.|.+.+..+.......+.+
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l  118 (268)
T 3mj6_A           90 DVQKADEGIYTCEIRLKNESMVMKKPVEL  118 (268)
T ss_dssp             SCCGGGCEEEEEEEEETTCCCEEEEEEEE
T ss_pred             CCCHhHCEEEEEEEEecCCcceEEEEEEE
Confidence            99999999999999987665433333333

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.16  E-value=8.1e-11  Score=62.08  Aligned_cols=74  Identities=15%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             cCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .|+.+.|.|.+.|. |.+ .+.|+++|..+...............  ....+.|.|..+..+|.|.|.|.+.|.....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          125 ATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            47899999999874 443 79999999987654100000000011  1124578999999999999999999987644

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.16  E-value=3.1e-10  Score=59.86  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=53.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|+++  +..+.            ...++....     ......|.|..++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D   81 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-----SGTDFTLTIDPVEADD   81 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-----cCCEEEEEECCCCHHH
Confidence            4577899999999999999988889999983  22210            011121110     1113489999999999


Q ss_pred             CEEEEEEEEcCCCc
Q psy9150          70 AGIYECYADNMYNV   83 (97)
Q Consensus        70 ~g~y~c~~~~~~g~   83 (97)
                      .|.|.|.+.+..+.
T Consensus        82 ~G~Y~C~~~~~~~~   95 (210)
T 1lk3_L           82 TAIYFCQQSWNGPL   95 (210)
T ss_dssp             CEEEEEEECSSSSC
T ss_pred             CeEEEEEEEcCCCc
Confidence            99999999987764

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.16  E-value=2.5e-10  Score=61.23  Aligned_cols=74  Identities=14%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---cc---------ccceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LY---------THMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ..+.+.+|+.+.|.|.+.+.|.|.+.|++++  ..   +.         ...++....   .......+|.|..++.+|.
T Consensus       135 ~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~  211 (238)
T 2p1y_A          135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF---NKREKKLSLHIADSQPGDS  211 (238)
T ss_dssp             SEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE---ETTTTEEEEEETTCCGGGC
T ss_pred             ceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEe---cCCCCeEEEEEcCCCHHHC
Confidence            3567889999999999999999999999853  11   10         001111100   0111135799999999999


Q ss_pred             EEEEEEEEcCC
Q psy9150          71 GIYECYADNMY   81 (97)
Q Consensus        71 g~y~c~~~~~~   81 (97)
                      |.|.|.+.|..
T Consensus       212 G~Y~C~a~n~~  222 (238)
T 2p1y_A          212 ATYFCAAIDTN  222 (238)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEeeCC
Confidence            99999999874

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.16  E-value=1.5e-09  Score=52.26  Aligned_cols=87  Identities=13%  Similarity=0.087  Sum_probs=56.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCE-----Ecc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGV-----ELY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~-----~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      +..+.+.+|+.+.|.|...+... ..+.|++...     .+. .        ..++....   .......+|.|.+++.+
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~   84 (113)
T 1zox_A            8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD---NQRDFIFTVTMEDLRMS   84 (113)
T ss_dssp             CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEE---ETTTTEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEE---CCcCCEEEEEEccCCHH
Confidence            35678999999999999976443 3599998532     111 0        01111110   01122457999999999


Q ss_pred             CCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          69 DAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        69 ~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      |+|.|.|.+.+........+.|.|.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (113)
T 1zox_A           85 DAGIYWCGITKGGLDPMFKVTVNIG  109 (113)
T ss_dssp             GCEEEEEEECCSSSCCEEEEEEEEE
T ss_pred             HCEEEEEeeEcCCCCccEEEEEEEE
Confidence            9999999998875444555555553

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.16  E-value=1.1e-10  Score=61.12  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=50.3

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+.+|+.+.|.|.+.+.|. .+.|++++..+.......      ........|.|..+...|.|.|.|.+.|..
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A           14 SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP------QELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC------HHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc------ccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            36789999999999988765 699999987664211000      000013479999999999999999999977

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.15  E-value=5e-10  Score=68.60  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeE-EE--eCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHIT-WF--KDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~-w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .++.+..|+.+.|.|.+.|.|.|.+. |+  ++|..+......     .........+|.|..+...|.|.|.|.+.|..
T Consensus       172 ~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~-----~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~  246 (731)
T 2v5y_A          172 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-----VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG  246 (731)
T ss_dssp             CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEE-----ECCSSEEEEEEEECSCCTTTCEEEEEEEEETT
T ss_pred             cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceE-----EeccccceEEEEEcccccccCeEEEEEEECCC
Confidence            46788899999999999999999988 77  577655432111     11223335689999999999999999999999


Q ss_pred             Cc-eeEEEEEEE
Q psy9150          82 NV-DTRTFKTDF   92 (97)
Q Consensus        82 g~-~~~~~~~~~   92 (97)
                      |. ......|.+
T Consensus       247 G~~~s~~~~l~V  258 (731)
T 2v5y_A          247 GVGISNYAELVV  258 (731)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CCcceeeEEEEE
Confidence            97 555454444

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.15  E-value=3.2e-10  Score=62.25  Aligned_cols=70  Identities=14%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+.+|+.+.|.|.+.+.    +.|++++..+...  ..    .........+|.|..+...|.|.|.|.+.|..|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~--~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            7 GPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQE--MA----KAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             CSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEE--EE----ECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             CCeEEEeCCCcEEEEEeccce----EEEECCCCCcccc--ee----ccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            346778899999999999774    9999998776321  11    1122233568999999999999999999998876

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.15  E-value=3.1e-10  Score=56.15  Aligned_cols=90  Identities=17%  Similarity=0.289  Sum_probs=55.1

Q ss_pred             CceeeEEEcCCeEEEEEEecc---cCCCeeEEEeCCEEccccceee----------------EEEEEecC--ce------
Q psy9150           3 SHFDYEYVLGHKIVFICMAKG---KPRPHITWFKDGVELYTHMYVN----------------LHEWHYGT--DR------   55 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~---~~~p~i~w~~~~~~~~~~~~~~----------------~~~~~~~~--~~------   55 (97)
                      ++..+.+..|+.+.|.|.+..   .+.+.+.|++.........-..                ........  .+      
T Consensus        10 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~   89 (135)
T 1xt5_A           10 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL   89 (135)
T ss_dssp             SCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCT
T ss_pred             CCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecC
Confidence            456788999999999999743   5778899998542210000000                00000000  10      


Q ss_pred             EEEEEEEccCCCCCCEEEEEEEEcCCC-----ceeEEEEEEE
Q psy9150          56 IKSKIEIDPATQMDAGIYECYADNMYN-----VDTRTFKTDF   92 (97)
Q Consensus        56 ~~~~l~i~~~~~~~~g~y~c~~~~~~g-----~~~~~~~~~~   92 (97)
                      ...+|.|.+++..|.|.|.|.+.+...     .....+.|.|
T Consensus        90 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V  131 (135)
T 1xt5_A           90 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV  131 (135)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEE
T ss_pred             CCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEE
Confidence            124799999999999999999998643     3335555544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.15  E-value=1.2e-10  Score=61.69  Aligned_cols=70  Identities=11%  Similarity=0.010  Sum_probs=49.7

Q ss_pred             eeeEEEcC--CeEEEEEEecccCCCeeEEEeC---CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLG--HKIVFICMAKGKPRPHITWFKD---GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g--~~~~l~c~~~~~~~p~i~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+.........    .    ...|.|..+..+|.|.|.|.+.|
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~----~----~~~l~I~~v~~~D~G~Y~C~a~n   85 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD----S----KKGFTIPSYMISYAGMVFCEAKI   85 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE----T----TTEEEEEGGGTTTCSEEEEEEC-
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc----C----CccEEEccCChhcCceEEEEEEE
Confidence            57788899  99999999976 7789999874   6555433222110    1    23689999999999999999988


Q ss_pred             CCCc
Q psy9150          80 MYNV   83 (97)
Q Consensus        80 ~~g~   83 (97)
                      ..+.
T Consensus        86 ~~~~   89 (213)
T 2x1w_L           86 NDES   89 (213)
T ss_dssp             ---C
T ss_pred             CCee
Confidence            5443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.15  E-value=5.6e-10  Score=60.26  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=53.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--E---Ecc---------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--V---ELY---------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.|.+.+.|++..  .   .+.         ...++...     ......+|.|..++.+
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGS-----GSGTDYSLTISNLEQE   84 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             cCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEe-----CCCCEEEEEEccCChh
Confidence            456778899999999999999999999999842  1   110         01111110     0111347999999999


Q ss_pred             CCEEEEEEEEcCCCc
Q psy9150          69 DAGIYECYADNMYNV   83 (97)
Q Consensus        69 ~~g~y~c~~~~~~g~   83 (97)
                      |.|.|.|.+.|..+.
T Consensus        85 D~G~Y~C~~~n~~~~   99 (250)
T 3esu_F           85 DIGTYFCQQGNTLPW   99 (250)
T ss_dssp             GCEEEEEEECSSSSC
T ss_pred             hCEEEEEEEeeCCCc
Confidence            999999999887553

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.15  E-value=1.6e-10  Score=62.39  Aligned_cols=91  Identities=12%  Similarity=0.147  Sum_probs=59.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCe-----eEEEeCCEEccccc-eeeEE---EEEecC---------ceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPH-----ITWFKDGVELYTHM-YVNLH---EWHYGT---------DRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~-----i~w~~~~~~~~~~~-~~~~~---~~~~~~---------~~~~~~l~i~~   64 (97)
                      ++..+.+..|+.+.|.|.+.+.|.+.     +.|++++....... .+...   ......         .....+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            44567889999999999998888776     99998532211000 00000   000000         00133599999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ++..|.|.|.|.+.+..+.....+.|.+.
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~  117 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVV  117 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEe
Confidence            99999999999999988777666666553

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.15  E-value=1.9e-10  Score=60.21  Aligned_cols=79  Identities=19%  Similarity=0.250  Sum_probs=53.4

Q ss_pred             eeEEEcCCeEEEEEEec----ccCCCeeEEEeCCEEccccceeeEEEE-Eec-----CceEEEEEEEccCCCCCCEEEEE
Q psy9150           6 DYEYVLGHKIVFICMAK----GKPRPHITWFKDGVELYTHMYVNLHEW-HYG-----TDRIKSKIEIDPATQMDAGIYEC   75 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~----~~~~p~i~w~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~i~~~~~~~~g~y~c   75 (97)
                      .+.+..|+.+.|.|.+.    +.|.+.+.|++++..+........... ...     ......+|.|.+++..|.|.|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            57788999999999984    446788999999876531000000000 000     00013479999999999999999


Q ss_pred             EEEcCCCce
Q psy9150          76 YADNMYNVD   84 (97)
Q Consensus        76 ~~~~~~g~~   84 (97)
                      .+.+..|..
T Consensus        83 ~~~~~~g~~   91 (201)
T 1dr9_A           83 VVLKYEKDA   91 (201)
T ss_dssp             EEEECCTTS
T ss_pred             EEEcCCCCc
Confidence            999987654

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.15  E-value=2.7e-10  Score=56.09  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEE----cccc-----ceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDGVE----LYTH-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      ++..+.+.+|+.+.|.|.+.+. +.+.+.|++....    +...     .++..............+|.|.+++.+|+|.
T Consensus         9 ~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~   88 (127)
T 2jju_A            9 PEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGT   88 (127)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEE
T ss_pred             eCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEE
Confidence            4567889999999999999765 5678999986521    1110     0111100000001124579999999999999


Q ss_pred             EEEEEEcCC
Q psy9150          73 YECYADNMY   81 (97)
Q Consensus        73 y~c~~~~~~   81 (97)
                      |.|.+.+..
T Consensus        89 Y~C~~~~~~   97 (127)
T 2jju_A           89 YYCVKFRKG   97 (127)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEcCC
Confidence            999998753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.15  E-value=2.2e-09  Score=65.72  Aligned_cols=88  Identities=20%  Similarity=0.278  Sum_probs=57.6

Q ss_pred             eeEEEcCCeEEEEEEecc--cCCCeeEEEeCCEEccccceeeEEEEEe---cCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           6 DYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHY---GTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      .+.+..|+.+.|.|.+.+  .+.+.+.|++++..+.............   ........|.|..+...|.|.|.|.+.|.
T Consensus       233 ~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  312 (772)
T 3v2a_R          233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG  312 (772)
T ss_dssp             CEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECS
T ss_pred             ceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcC
Confidence            357889999999999987  4456799999887654322111100000   11223568999999999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy9150          81 YNVDTRTFKTDFS   93 (97)
Q Consensus        81 ~g~~~~~~~~~~~   93 (97)
                      .+.....+.|.+.
T Consensus       313 ~~~~~~~~~l~V~  325 (772)
T 3v2a_R          313 LMTKKNSTFVRVH  325 (772)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CcceeEEEEEEEe
Confidence            8877766666553

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.15  E-value=1.7e-09  Score=53.29  Aligned_cols=77  Identities=13%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEe--CCEE----ccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFK--DGVE----LYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ++..+.+.+|+.+.|.|...+.  +.+.+.|++  .+..    +....++....   .......+|.|.+++.+|+|.|.
T Consensus         6 ~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~---~~~~~~~sL~I~~v~~~DsG~Y~   82 (126)
T 3moq_A            6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETV---NKGSKSFSLRISDLRVEDSGTYK   82 (126)
T ss_dssp             ECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEE---ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEE---eCCCCEEEEEECcCChHhCEEEE
Confidence            4567889999999999999765  466799998  3322    11122222211   11122568999999999999999


Q ss_pred             EEEEcCCC
Q psy9150          75 CYADNMYN   82 (97)
Q Consensus        75 c~~~~~~g   82 (97)
                      |.+.+..+
T Consensus        83 C~~~~~~~   90 (126)
T 3moq_A           83 CQAFYVFF   90 (126)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEcCC
Confidence            99887554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.14  E-value=1.3e-10  Score=59.93  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=56.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEE-EecCc----eEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEW-HYGTD----RIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..+.+..|+.+.|.|.+.+ |.+.+.|++++..+........... .....    ....+|.|.+++..|.|.|.|.+.+
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            4577889999999999854 8889999998764321100000000 00000    0135799999999999999999998


Q ss_pred             CCCceeEEEEEEE
Q psy9150          80 MYNVDTRTFKTDF   92 (97)
Q Consensus        80 ~~g~~~~~~~~~~   92 (97)
                      ..|  ...+.|.|
T Consensus        82 ~~~--~~~~~L~V   92 (171)
T 1ccz_A           82 ITD--TMKFFLYV   92 (171)
T ss_dssp             CCS--CEEEEEEE
T ss_pred             CCC--cEEEEEEE
Confidence            877  45555554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.14  E-value=1.5e-09  Score=64.71  Aligned_cols=87  Identities=16%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCC---eeEEEeCCEEcc-----c---------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRP---HITWFKDGVELY-----T---------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      +.++.+.+|+.+.|.|.+.+.+.+   .+.|++++..+.     .         ..+..+..   ........|.|..++
T Consensus         7 P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN---FPENGTFVVNIAQLS   83 (585)
T ss_pred             cceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEe---cCCCCEEEEEECCCC
Confidence            456889999999999999887654   799999875321     0         01111110   001123579999999


Q ss_pred             CCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          67 QMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ..|.|.|.|.+.|..+.....+.|.+.
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~  110 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVS  110 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEe
Confidence            999999999999988877666666554

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.14  E-value=7.5e-10  Score=53.08  Aligned_cols=78  Identities=9%  Similarity=0.096  Sum_probs=51.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCC-----eeEEEeCCEE-cc--ccc---------ee--eEEEEEecCceEEEEEEEccCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP-----HITWFKDGVE-LY--THM---------YV--NLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p-----~i~w~~~~~~-~~--~~~---------~~--~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+..|+.+.|.|.+.+.|.+     .+.|++++.. +.  ...         .+  +..  ...   ...+|.|.+++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~---~~~sL~I~~v~   77 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS--FDS---DSWTLRLHNLQ   77 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEE--EET---TTTEEEECSCC
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEE--EEC---CCEEEEEcCCC
Confidence            5678899999999998765533     3999986531 10  000         00  000  000   02479999999


Q ss_pred             CCCCEEEEEEEEcCCCceeEEE
Q psy9150          67 QMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      .+|.|.|.|.+.+..+.....+
T Consensus        78 ~~D~G~Y~C~v~~~~~~~~~~~   99 (110)
T 1ncn_A           78 IKDKGLYQCIIHHKKPTGMIRI   99 (110)
T ss_dssp             GGGCEEEEEEEEEECSSSEEEE
T ss_pred             hHHCEEEEEEEEcCCCCceEEE
Confidence            9999999999998877655433

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.14  E-value=1.7e-10  Score=60.16  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             eeeEEEcCCeEEEEEEec--ccCCCeeEEEe--CCEEccc----------cceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAK--GKPRPHITWFK--DGVELYT----------HMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~--~~~~p~i~w~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ..+...+|+.+.|.|...  +.+.+.+.|++  ++..+..          ..+..+.    .    ..+|.|..++..|.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~----~----ngsL~I~~v~~~Ds   78 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF----K----NGTLKIKHLKTDDQ   78 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC----T----TSCEEECSCCGGGC
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC----C----CCCEEECCCChhhC
Confidence            467888999999999542  34567899999  8776521          1111110    1    33799999999999


Q ss_pred             EEEEEEEEcCCCcee--EEEEEEE
Q psy9150          71 GIYECYADNMYNVDT--RTFKTDF   92 (97)
Q Consensus        71 g~y~c~~~~~~g~~~--~~~~~~~   92 (97)
                      |.|.|.+.|..|...  ..+.|.|
T Consensus        79 G~Y~c~~~n~~g~~~~~~~~~L~V  102 (182)
T 1hnf_A           79 DIYKVSIYDTKGKNVLEKIFDLKI  102 (182)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCceeEEEEEEEEE
Confidence            999999999888753  3444544

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.14  E-value=8.9e-11  Score=61.95  Aligned_cols=74  Identities=14%  Similarity=0.269  Sum_probs=51.2

Q ss_pred             cCCeEEEEEEecc-cCCC-eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .|+.+.|.|.+.+ .|.+ .+.|+++|..+................  ...+.|.|..+..+|.|.|.|.+.|.....
T Consensus       126 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          126 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            4779999999987 5554 799999998876541110000000111  124589999999999999999999987764

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.14  E-value=9.5e-10  Score=58.78  Aligned_cols=74  Identities=11%  Similarity=0.184  Sum_probs=52.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ....            ...++...     ......+|.|.+++.+|
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D  105 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-----GSGTDFTLTISSLQPED  105 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE-----cCCCEEEEEECCCChhh
Confidence            34678899999999999999888999999832  1110            01122111     01124579999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.+..+
T Consensus       106 ~G~Y~C~~~~~~~  118 (237)
T 3sob_L          106 FATYYCQQSYTTP  118 (237)
T ss_dssp             CEEEEEEECSSSS
T ss_pred             CeEEEEeeccCCc
Confidence            9999999988665

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.14  E-value=1.3e-10  Score=55.60  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---cc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +. .        ..++...     ......+|.|.+++.+
T Consensus         7 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~   81 (107)
T 1i8k_A            7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS-----GTGTDFVFTIENTLSE   81 (107)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             CCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEE-----ccCCEEEEEECCCCHH
Confidence            345678899999999999988778889999842  21   11 0        1122211     0112447999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        82 DsG~Y~C~~~~~~   94 (107)
T 1i8k_A           82 DVGDYYCLQSFNV   94 (107)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             HCEEEEEEEeeCC
Confidence            9999999998753

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.14  E-value=8.5e-11  Score=66.56  Aligned_cols=70  Identities=7%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      .+.+|+.+.|.|.+.+.|.|.+.|++++..+..               ....|.|..+...|.|.|.|.+.|..+.....
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~  171 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK  171 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEECSSSCEEE---------------ESSEEEECSBCGGGCEECEEEEEETTEEEEEC
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc---------------cceEEEEeeCChhcCCEEEEEEecCCCeEEEE
Confidence            467899999999998899999999998754311               13479999999999999999999876665554


Q ss_pred             EEEEE
Q psy9150          88 FKTDF   92 (97)
Q Consensus        88 ~~~~~   92 (97)
                      +.+.+
T Consensus       172 ~~l~v  176 (363)
T 1wio_A          172 IDIVV  176 (363)
T ss_dssp             CEECE
T ss_pred             EEEEE
Confidence            44443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.13  E-value=1.9e-10  Score=61.69  Aligned_cols=76  Identities=20%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccC----CCeeEEEeC--CEEcc---c---------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP----RPHITWFKD--GVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ++..+.+.+|+.+.|.|.+.+.|    .+.+.|+++  +..+.   .         ..++...     ......+|.|.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~   81 (240)
T 1moe_A            7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT-----GSRTDFTLIIDP   81 (240)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESS
T ss_pred             eCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEE-----ecCCeEEEEEcC
Confidence            34567899999999999999887    788999984  22110   0         1111111     011134799999


Q ss_pred             CCCCCCEEEEEEEEcCCCc
Q psy9150          65 ATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~   83 (97)
                      ++..|.|.|.|.+.|..+.
T Consensus        82 v~~~D~G~Y~C~~~n~~~~  100 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPY  100 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSC
T ss_pred             CChhhCEEEEEEEccCCce
Confidence            9999999999999987653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.13  E-value=2.8e-10  Score=60.01  Aligned_cols=83  Identities=14%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCe---eEEEeCCEEcccc----------------ceeeEEEEE--ecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPH---ITWFKDGVELYTH----------------MYVNLHEWH--YGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~---i~w~~~~~~~~~~----------------~~~~~~~~~--~~~~~~~~~l~i   62 (97)
                      +.++.+..|+.+.|.|.+.+.+.+.   +.|++++..+...                .+.......  ........+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            3467889999999999998877664   7899965432110                000000000  001112346999


Q ss_pred             ccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          63 DPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      .+++.+|.|.|.|.+.+..+....
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~  111 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRR  111 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCccee
Confidence            999999999999999987765443

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.13  E-value=2e-10  Score=56.45  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=54.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCC----eeEEEeCC----------------EEcccc----ceeeEEEEEecCc-----
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRP----HITWFKDG----------------VELYTH----MYVNLHEWHYGTD-----   54 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p----~i~w~~~~----------------~~~~~~----~~~~~~~~~~~~~-----   54 (97)
                      +..+.+.+|+.+.|.|.+...+.+    .+.|++..                ..+...    .+..+.    ...     
T Consensus         9 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~g~   84 (128)
T 3r0n_A            9 LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV----SAKQSTGQ   84 (128)
T ss_dssp             CSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEES----SCBCCCST
T ss_pred             CCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEe----cccccccc
Confidence            446788899999999999776555    79999852                111110    111110    000     


Q ss_pred             -----eEEEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEEE
Q psy9150          55 -----RIKSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTD   91 (97)
Q Consensus        55 -----~~~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~~   91 (97)
                           ....+|.|.+++.+|.|.|.|.+.+ ..|.......|.
T Consensus        85 ~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~  127 (128)
T 3r0n_A           85 DTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR  127 (128)
T ss_dssp             TCCCBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccccCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEE
Confidence                 1134799999999999999998765 456666665554

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.13  E-value=4.5e-10  Score=66.28  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=56.4

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEE-EecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEW-HYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..|+.+.|.|.+.|.+++  .+.|+++|..+........... ........+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       125 ~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  204 (523)
T 2rcj_C          125 EELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  204 (523)
T ss_pred             cccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc
Confidence            34568899999999988765  8999999987754322110000 00011123579999999999999999999988865


Q ss_pred             eEEEE
Q psy9150          85 TRTFK   89 (97)
Q Consensus        85 ~~~~~   89 (97)
                      ...+.
T Consensus       205 ~~~~~  209 (523)
T 2rcj_C          205 EKTVA  209 (523)
T ss_pred             cccee
Confidence            54443

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.13  E-value=4.1e-10  Score=54.39  Aligned_cols=86  Identities=14%  Similarity=0.074  Sum_probs=53.0

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCce----EEEEEEEccCCCCCCEEE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDR----IKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y   73 (97)
                      ...+.+|+.+.|.|.......+.+.|++.......        ....... .....++    .+.+|.|.+++.+|.|.|
T Consensus         9 p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~-~~~~~gR~~~~~ngSL~I~nvt~~D~G~Y   87 (111)
T 2qsq_A            9 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATP-GPAYSGREIIYPNASLLIQNIIQNDAGFY   87 (111)
T ss_dssp             SSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEE-CTTCCSCEEECTTSCEEECSCCGGGCEEE
T ss_pred             cceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceec-CcccCCcEEEecCCcEEEccCcccCCeEE
Confidence            45688999999999854434456999986432210        0000000 0000001    134799999999999999


Q ss_pred             EEEEEcCCCc-eeEEEEEEE
Q psy9150          74 ECYADNMYNV-DTRTFKTDF   92 (97)
Q Consensus        74 ~c~~~~~~g~-~~~~~~~~~   92 (97)
                      +|.+.+..+. ......|.|
T Consensus        88 tc~v~~~~~~~~~~~~~L~V  107 (111)
T 2qsq_A           88 TLHVIKSDLVNEEATGQFRV  107 (111)
T ss_dssp             EEEEEETTSCCEEEEEEEEE
T ss_pred             EEEEEeCCCcEEEEEEEEEE
Confidence            9999988663 455555554

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.13  E-value=1.6e-10  Score=61.12  Aligned_cols=78  Identities=9%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             cCCeEEEEEEecc-cCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        11 ~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      .|+.+.|.|.+.+ .|.| .+.|+++|..+...................+.|.+......|.|.|+|.+.|..+.....+
T Consensus       135 ~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          135 KENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            4578999999988 4666 7999999998864211100000001111234577888877889999999999988766544

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.12  E-value=2.4e-10  Score=60.53  Aligned_cols=75  Identities=13%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             cCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          11 LGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        11 ~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .|+.+.|.|.+.+. |.| .+.|+++|..+................  ...+.|.|..+..+|.|.|.|.+.|......
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            37899999999884 444 799999998876431100000000111  2245788999889999999999999876543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.12  E-value=6.2e-11  Score=64.45  Aligned_cols=71  Identities=14%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+.+.+|+.+.|.|.+.+.+.+.+.|++  ++..+..            ..++...     ......+|.|..++.+|.|
T Consensus       148 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G  222 (257)
T 1f3r_B          148 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS-----GSGTDYTLTISSLQPEDVA  222 (257)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EEBTEEEEEECSCCGGGCS
T ss_pred             EEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEe-----cCCCEEEEEECCCChhhCE
Confidence            4557789999999999998888999999  5543210            1111111     0111347999999999999


Q ss_pred             EEEEEEEcCC
Q psy9150          72 IYECYADNMY   81 (97)
Q Consensus        72 ~y~c~~~~~~   81 (97)
                      .|.|.+.|..
T Consensus       223 ~Y~C~a~n~~  232 (257)
T 1f3r_B          223 TYFCYQYNNG  232 (257)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEEeCCC
Confidence            9999999864

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.12  E-value=1.2e-09  Score=54.03  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=57.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-CCeeEEEe--CCEE---cc-c---------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-RPHITWFK--DGVE---LY-T---------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~--~~~~---~~-~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+..+.+.+|+.+.|.|...+.. ...+.|++  .+..   +. .         ..++...   ........+|.|..++
T Consensus         7 ~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~---~~~~~~~~sL~I~~~~   83 (129)
T 3rrq_A            7 SPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVT---QLPNGRDFHMSVVRAR   83 (129)
T ss_dssp             ECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEE---ECTTSSEEEEEESSCC
T ss_pred             CCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEE---EcCCCCEEEEEECCCC
Confidence            34578899999999999997754 45799997  2211   11 0         0111111   0112235689999999


Q ss_pred             CCCCEEEEEEEEcCCCce----eEEEEEEEE
Q psy9150          67 QMDAGIYECYADNMYNVD----TRTFKTDFS   93 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~----~~~~~~~~~   93 (97)
                      .+|+|.|.|.+.+..+..    .....|.|+
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~  114 (129)
T 3rrq_A           84 RNDSGTYLCGAISLAPKLQIKESLRAELRVT  114 (129)
T ss_dssp             GGGCEEEEEEEEECGGGCEEEECCCEEEEEE
T ss_pred             hhHCEEEEEEEEecCCCceeeEeceEEEEEe
Confidence            999999999999876654    334455554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.12  E-value=1.3e-09  Score=57.52  Aligned_cols=75  Identities=11%  Similarity=0.100  Sum_probs=50.3

Q ss_pred             EEEcCCeEEEEEEecccCC---CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           8 EYVLGHKIVFICMAKGKPR---PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~---p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+.+|+.+.|.|.+.+.++   +.+.|++++..+......... ...........|.+.....+|.|.|+|.+.|..+.
T Consensus       102 ~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA-DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC-SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             EEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc-CcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            4678999999999987643   368999999876532100000 00000112445778888888899999999998875

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.12  E-value=1.1e-09  Score=59.56  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=53.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEccc-------------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELYT-------------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++.  +.....             ..++....   .......+|.|..++.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~   85 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEF---SKSDSSFHLRKASVHR   85 (256)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEE---ETTTTEEEEEESSCCG
T ss_pred             cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEE---cCCCCEEEEEECCCCc
Confidence            45678899999999999998889999999982  211100             01111100   0111245799999999


Q ss_pred             CCCEEEEEEEEcCCC
Q psy9150          68 MDAGIYECYADNMYN   82 (97)
Q Consensus        68 ~~~g~y~c~~~~~~g   82 (97)
                      +|.|.|.|.+.+..+
T Consensus        86 ~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           86 SDSAVYFCAVSAKGT  100 (256)
T ss_dssp             GGCSEEEEEEECTTC
T ss_pred             ccCEEEEEEEecCCC
Confidence            999999999998754

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.12  E-value=3.5e-10  Score=61.03  Aligned_cols=79  Identities=15%  Similarity=0.251  Sum_probs=46.9

Q ss_pred             EcCCeEEEEEEecc-cCCC-eeEEEeCCEEccccc------e-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150          10 VLGHKIVFICMAKG-KPRP-HITWFKDGVELYTHM------Y-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus        10 ~~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ..|..+.|.|.+.+ .|.| .+.|++++..+....      . ..............+.|.+......|.|.|+|.+.|.
T Consensus       131 ~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~  210 (248)
T 3pv7_A          131 MKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA  210 (248)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECT
T ss_pred             ccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECC
Confidence            34667789999988 7888 999999886443210      0 0010000011122457888888889999999999999


Q ss_pred             CCceeEEE
Q psy9150          81 YNVDTRTF   88 (97)
Q Consensus        81 ~g~~~~~~   88 (97)
                      .+......
T Consensus       211 ~~~~~~~~  218 (248)
T 3pv7_A          211 SLHTPLRS  218 (248)
T ss_dssp             TCSSCEEE
T ss_pred             CCCCCcEE
Confidence            88744433

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.12  E-value=1.4e-09  Score=57.16  Aligned_cols=66  Identities=14%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      .+.+|+.+.|.|.+.+ +.+.+.|+++|..+........    .........|.|..++  |.|.|.|.+.+.
T Consensus       118 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGP----KVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEE----EETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccc----ccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            5678999999999976 5688999999876543211100    0111224578899888  999999999865

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.11  E-value=2.5e-09  Score=57.54  Aligned_cols=72  Identities=15%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEE------------cccc----ceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVE------------LYTH----MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~------------~~~~----~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ++..+.+.+|+.+.|.| ..+.+.+.+.|++  .+..            ....    .++.+.    .......+|.|.+
T Consensus         8 ~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~   82 (245)
T 4ei6_B            8 IPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVE----RPDGSYFTLKIQP   82 (245)
T ss_dssp             ECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEE----CCTTSCEEEEECS
T ss_pred             CCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEE----eccCceEEEEECC
Confidence            34578899999999999 6677888999998  1111            1100    111111    1112245899999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|.|.|.|.+.+
T Consensus        83 v~~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           83 TALEDSAVYFCASSF   97 (245)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCHhHCEEEEEEEcc
Confidence            999999999999985

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.5e-11  Score=69.49  Aligned_cols=81  Identities=11%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCE-EEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~c~~~~~~g~   83 (97)
                      .++.+.+|+.+.+.|.+.+.|.|.+.|++++..+......       .......+|.|..+...|.| .|.|.+.|..|.
T Consensus       166 ~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~  238 (347)
T 2ifg_A          166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR  238 (347)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEE
T ss_pred             CceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-------ceecccceEEEeeCChHHCCCeEEEEEEcCCCC
Confidence            3456788999999999999999999999988654321100       11122568999999999999 999999999887


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.+.+
T Consensus       239 ~~~~~~l~V  247 (347)
T 2ifg_A          239 AEVSVQVNV  247 (347)
T ss_dssp             CCEEECCCC
T ss_pred             EEEEEEEEE
Confidence            766554443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.10  E-value=2.2e-09  Score=59.75  Aligned_cols=70  Identities=20%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.+|+.+.|.|.+. .+.+.+.|++++..+........    .........|.|..++..|.|.|.|.+.|..|.
T Consensus       130 v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          130 VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ----IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE----EETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee----ecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            67899999999995 46678999998876643221111    011223567999999999999999999998774

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.10  E-value=9.8e-10  Score=59.32  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=49.0

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcccc-----------------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYTH-----------------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+...                 .++.+..   .......+|.|..
T Consensus       140 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~  216 (250)
T 3esu_F          140 PELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTA---DKSSSTAYMQLSS  216 (250)
T ss_dssp             CEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE---EGGGTEEEEEECS
T ss_pred             ceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEe---cCCCCeEEEEECC
Confidence            45678899999999998866  788999986  3322110                 1111110   0111234799999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|.|.|.|.+.+
T Consensus       217 v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          217 LTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccCEEEEEEEec
Confidence            999999999999997

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=99.10  E-value=4e-10  Score=54.89  Aligned_cols=79  Identities=20%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEE----ccccc-----eeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDGVE----LYTHM-----YVNLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      ++..+.+.+|+.+.|.|.+.+. +.+.+.|++++..    +....     +...............+|.|.+++.+|.|.
T Consensus        13 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~   92 (120)
T 2yz1_A           13 PEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGT   92 (120)
T ss_dssp             CSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEE
T ss_pred             CCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEE
Confidence            4567889999999999999765 5678999996421    11000     000000000001113479999999999999


Q ss_pred             EEEEEEcCC
Q psy9150          73 YECYADNMY   81 (97)
Q Consensus        73 y~c~~~~~~   81 (97)
                      |.|.+.+..
T Consensus        93 Y~C~~~~~~  101 (120)
T 2yz1_A           93 YYCVKFQKG  101 (120)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEcCC
Confidence            999988754

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.10  E-value=3.9e-10  Score=61.12  Aligned_cols=78  Identities=17%  Similarity=0.337  Sum_probs=55.0

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC---Cc
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY---NV   83 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~---g~   83 (97)
                      ..+.+|+.+.|.|.+.+. .+.+.|+++|..+....  .       .......|.|..++..|.|.|.|.+.|..   ..
T Consensus       111 ~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~--~-------~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~  180 (242)
T 1p6f_A          111 PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQR--G-------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSF  180 (242)
T ss_dssp             SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEE--E-------ECSSEEEEEEEECCGGGCEEEEEEEEEETTEECC
T ss_pred             CccCCCCcEEEEEecCCC-CCEEEEEECCCccCccc--c-------CCCceEEEEeCCCccccCEEEEEEEECCCCcccC
Confidence            356789999999998764 56899999987654310  0       01124679999999999999999998763   22


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      .+..+.|.|..
T Consensus       181 ~S~~~~l~V~~  191 (242)
T 1p6f_A          181 PSEPVKLLVTG  191 (242)
T ss_dssp             CCCCEEEEEEC
T ss_pred             CCCCEEEEEec
Confidence            34455555543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.09  E-value=9.4e-11  Score=61.84  Aligned_cols=79  Identities=11%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             cCCeEEEEEEecccC--CCeeEEEeCCEEccccceee-EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          11 LGHKIVFICMAKGKP--RPHITWFKDGVELYTHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~--~p~i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      .|+.+.|.|.+.+.+  .+.+.|+++|..+....... ............+.|.|..+...|.|.|+|.+.|..+.....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          125 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  204 (211)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred             cCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence            488999999998863  47899999999876421111 000000111224578888888888999999999998877665


Q ss_pred             EE
Q psy9150          88 FK   89 (97)
Q Consensus        88 ~~   89 (97)
                      +.
T Consensus       205 ~~  206 (211)
T 3tv3_L          205 VA  206 (211)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.09  E-value=3.1e-09  Score=55.72  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=54.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCe---eEEEeCCEEccccceee------EE----------EEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPH---ITWFKDGVELYTHMYVN------LH----------EWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~---i~w~~~~~~~~~~~~~~------~~----------~~~~~~~~~~~~l~i~   63 (97)
                      .+..+.+..|+.+.|.|.+.+.|.+.   +.|++++..........      ..          ...........+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            45678899999999999998877664   89998664332111000      00          0000001113469999


Q ss_pred             cCCCCCCEEEEEEEEcCCCcee
Q psy9150          64 PATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +++..|.|.|.|.+.+..+...
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~  106 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSF  106 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEE
T ss_pred             eccHHHCCceeEEEEeccCcee
Confidence            9999999999999887666443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.09  E-value=5e-10  Score=59.07  Aligned_cols=75  Identities=13%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccC---CCeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP---RPHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      +..+.+.+|+.+.|.|.+.+.+   .+.+.|+++  +..+.            ...++....     ......|.|..++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~   81 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-----IGDKAALTITGAQ   81 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCC
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-----eCCEEEEEECCCC
Confidence            4567889999999999998877   478999984  22210            011121110     1113479999999


Q ss_pred             CCCCEEEEEEEEcCCCc
Q psy9150          67 QMDAGIYECYADNMYNV   83 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~   83 (97)
                      .+|.|.|.|.+.+..+.
T Consensus        82 ~~D~G~Y~C~~~~~~~~   98 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKL   98 (212)
T ss_dssp             GGGCEEEEEEEECSSCE
T ss_pred             ccCCEEEEEEEecCchh
Confidence            99999999999987653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.09  E-value=1.7e-09  Score=57.30  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=51.7

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+..                 ..++.+...   ......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~   84 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLE---TSATTAYLQIN   84 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEE---GGGTEEEEEEC
T ss_pred             CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEe---cCCCEEEEEEC
Confidence            456789999999999998765  678999985  332210                 111111100   01113589999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|.|.|.|.+.+..+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~  103 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIV  103 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTT
T ss_pred             CCCcccCEEEEEEEeccCc
Confidence            9999999999999998763

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.09  E-value=3.7e-09  Score=59.01  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=57.0

Q ss_pred             eeEEEcC---CeEEEEEE-ecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           6 DYEYVLG---HKIVFICM-AKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         6 ~~~~~~g---~~~~l~c~-~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+.+..|   +.+.|.|. ..+.|.|.+.|++++.......   ..............|.+..+...|.|.|.|.+.|..
T Consensus       141 ~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  217 (331)
T 3u83_A          141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ---EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHM  217 (331)
T ss_dssp             CEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEE---EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETT
T ss_pred             ceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccc---eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCC
Confidence            4556677   77999997 7889999999998532111100   000000111224578999999999999999999998


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.|.+
T Consensus       218 ~~~~~~~~l~V  228 (331)
T 3u83_A          218 DRFKESLTLNV  228 (331)
T ss_dssp             EEEEEEEECCE
T ss_pred             CcceeeEEEEE
Confidence            88777666554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.09  E-value=5.6e-10  Score=57.74  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=53.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc--------------ceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH--------------MYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...              .+....  .........+|.|..++..|
T Consensus         2 ~~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~L~i~~v~~~D   79 (184)
T 2ny1_B            2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSR--RSLWDQGNFPLIIKNLKIED   79 (184)
T ss_dssp             CCEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECC--GGGGGGTBCCEEECSCCGGG
T ss_pred             CCcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccc--cccccCCeEEEEEecCCHHH
Confidence            35678899999999999998899999999987521110              001000  00001113459999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.+..+
T Consensus        80 ~G~Y~C~~~~~~~   92 (184)
T 2ny1_B           80 SDTYICEVEDQKE   92 (184)
T ss_dssp             CEEEEEEETTEEE
T ss_pred             CEEEEEEEEcCCC
Confidence            9999999987654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.09  E-value=6e-10  Score=61.19  Aligned_cols=74  Identities=12%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCE-----Eccc---------cceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGV-----ELYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++.     .+..         ..++...     ......+|.|..++..|
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D   93 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-----GSGTDFTLTISSLQPED   93 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEe-----ccCCeEEEEEccCChhh
Confidence            456778899999999999998899999998431     1110         1112111     01113479999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.|..+
T Consensus        94 sG~Y~C~~~n~~~  106 (276)
T 3auv_A           94 FATYYCQQHYTTP  106 (276)
T ss_dssp             CEEEEEEECSSSS
T ss_pred             CEEEEEEEecCCc
Confidence            9999999998754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.08  E-value=9.7e-10  Score=59.47  Aligned_cols=75  Identities=13%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-----CCeeEEEeC--CEEcc----------c--cceeeEEEEEecCceEEEEEEEcc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-----RPHITWFKD--GVELY----------T--HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-----~p~i~w~~~--~~~~~----------~--~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +..+.+.+|+.+.|.|.+.+.+     .+.+.|+++  +..+.          .  ..++....     .....+|.|.+
T Consensus        45 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~  119 (254)
T 2c1o_A           45 PLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG-----SGTDFTLKISR  119 (254)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESS
T ss_pred             CceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec-----CCCEEEEEECc
Confidence            4567889999999999998887     388999973  32211          0  11221110     11134799999


Q ss_pred             CCCCCCEEEEEEEEcCCCc
Q psy9150          65 ATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~   83 (97)
                      ++..|.|.|.|.+.|..+.
T Consensus       120 v~~~D~G~Y~C~a~n~~~~  138 (254)
T 2c1o_A          120 VEAEDLGIYYCVQGSHFPP  138 (254)
T ss_dssp             CCGGGCSEEEEEECSSSSC
T ss_pred             CCcccCEEEEEEEEcCcce
Confidence            9999999999999987553

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.08  E-value=1e-09  Score=59.72  Aligned_cols=72  Identities=14%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC-----eeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP-----HITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p-----~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+.+|+.+.|.|.+.+.+.+     .+.|++  ++..+..            ..++...     ......+|.|..+
T Consensus       129 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v  203 (256)
T 1nqb_A          129 LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGS-----GSGTDFTLKISRV  203 (256)
T ss_dssp             SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSC
T ss_pred             cEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEE-----ccCCEEEEEECCC
Confidence            45678899999999999888765     899999  5543310            1111111     0111457999999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|.|.|.|.+.+..
T Consensus       204 ~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          204 EAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             CGGGCEEEEEEECSSS
T ss_pred             ChHHCEEEEEEEccCC
Confidence            9999999999998754

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.08  E-value=1.8e-10  Score=61.34  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             EEcCCeEEEEEEecccC---C-CeeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           9 YVLGHKIVFICMAKGKP---R-PHITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~---~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.+|+.+.|.|.+.+.+   . +.+.|++++..+.......  .......  .....|.|..++..|.|.|.|.+.|..+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~  100 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT--HREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDL  100 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEE--EEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTC
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccccc--ccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcC
Confidence            56799999999998873   3 7899999997765322110  0011111  1245799999999999999999999876


Q ss_pred             ce
Q psy9150          83 VD   84 (97)
Q Consensus        83 ~~   84 (97)
                      ..
T Consensus       101 ~~  102 (218)
T 2rgs_A          101 PS  102 (218)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.08  E-value=3.2e-09  Score=55.69  Aligned_cols=88  Identities=9%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEE-----EEEec--CceE----EEEEEEccCCCCCCEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLH-----EWHYG--TDRI----KSKIEIDPATQMDAGIY   73 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~-----~~~~~--~~~~----~~~l~i~~~~~~~~g~y   73 (97)
                      ....+.+|+.+.|.|...+.+.+.+.|++++............     .....  ..+.    ..+|.|..++..|.|.|
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y   86 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY   86 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEE
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEE
Confidence            3467889999999999888888999999865422211000000     00000  0000    23699999999999999


Q ss_pred             EEEEEcCC-CceeEEEEEEE
Q psy9150          74 ECYADNMY-NVDTRTFKTDF   92 (97)
Q Consensus        74 ~c~~~~~~-g~~~~~~~~~~   92 (97)
                      .|.+.+.. +.....+.|.+
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V  106 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHV  106 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEcccCceeEEEEEEEe
Confidence            99999985 44455555544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.08  E-value=7.5e-10  Score=60.08  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=55.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ..+.+.+|+.+.|.|.+.+.+.+.+.|++.  +....            ...++...     ......+|.|..++.+|.
T Consensus       146 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~  220 (256)
T 3umt_A          146 SSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGS-----RSGSDYSLTISSLESEDF  220 (256)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEE-----EETTEEEEEECSCCGGGC
T ss_pred             CeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEe-----cCCCEEEEEECCCChhHC
Confidence            346788999999999999988889999983  22111            01111111     011144699999999999


Q ss_pred             EEEEEEEEcCCCce-eEEEEEEE
Q psy9150          71 GIYECYADNMYNVD-TRTFKTDF   92 (97)
Q Consensus        71 g~y~c~~~~~~g~~-~~~~~~~~   92 (97)
                      |.|.|.+.+..... .....|.|
T Consensus       221 G~Y~C~~~~~~~~~fg~gt~L~V  243 (256)
T 3umt_A          221 VDYYCLQYASSPPTFGGGTKLEI  243 (256)
T ss_dssp             SEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEEEeeCCCcEECCCEEEEE
Confidence            99999998865432 33444444

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.07  E-value=1.4e-09  Score=61.38  Aligned_cols=85  Identities=18%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             eeeEEEcCCeEEEEEEeccc--CCCeeEEEeC--CEEcc-----------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGK--PRPHITWFKD--GVELY-----------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.  +.+.+.|+++  +..+.                 ...++.+..   .......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~   84 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTA---DTSASTAYVELS   84 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEE---ETTTTEEEEEEC
T ss_pred             CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEE---ecCCCEEEEEEC
Confidence            45788999999999999876  3678999985  32221                 011222111   001123579999


Q ss_pred             cCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          64 PATQMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +++.+|.|.|.|.+.|..+.......|.+
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V  113 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTV  113 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEE
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEE
Confidence            99999999999999986544333333433

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.07  E-value=7.3e-10  Score=59.76  Aligned_cols=75  Identities=15%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---cc---------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LY---------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.+.+.+.+.+.|+++.  ..   +.         ...++...     ......+|.|..++.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            7 SPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGS-----GSGTDFTLSINSVETE   81 (242)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEe-----cCCCEEEEEECCCChH
Confidence            345678999999999999999888999999842  11   10         01112111     0111457999999999


Q ss_pred             CCEEEEEEEEcCCC
Q psy9150          69 DAGIYECYADNMYN   82 (97)
Q Consensus        69 ~~g~y~c~~~~~~g   82 (97)
                      |.|.|.|.+.|..+
T Consensus        82 D~G~Y~C~~~n~~~   95 (242)
T 2znx_A           82 DFGMYFCQQSNSXP   95 (242)
T ss_dssp             GCEEEEEEECSSSS
T ss_pred             HCEEEEEeEecCCc
Confidence            99999999998754

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.07  E-value=4.4e-09  Score=50.81  Aligned_cols=75  Identities=13%  Similarity=0.214  Sum_probs=51.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE----ccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE----LYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ++..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..    +....++....   .......+|.|.+++.+|+|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~   82 (113)
T 1sq2_N            6 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETV---NSGSKSFSLRINDLTVEDGGTYR   82 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEE---ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEE---eCCCCEEEEEECCCChhhCEEEE
Confidence            45677899999999999997655  567999984  221    11112222211   11122467999999999999999


Q ss_pred             EEEEcC
Q psy9150          75 CYADNM   80 (97)
Q Consensus        75 c~~~~~   80 (97)
                      |.+.+.
T Consensus        83 C~~~~~   88 (113)
T 1sq2_N           83 CGLGVA   88 (113)
T ss_dssp             EEECBT
T ss_pred             EEEEeC
Confidence            999873

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.07  E-value=1.4e-09  Score=59.19  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             eEEEcCCeEEEEEEecc-cCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEc---cCCCCCCEE--EEEEEE
Q psy9150           7 YEYVLGHKIVFICMAKG-KPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID---PATQMDAGI--YECYAD   78 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~-~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g~--y~c~~~   78 (97)
                      ..+.+|+.+.|.|.+.+ .|.|  .+.|++++..+....  ..     ...    .+.+.   .++..|.|.  |.|.+.
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~--~~-----~~~----~~~~~~~~~~~~~d~g~g~Y~C~a~   81 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV--TY-----GND----SFSAKASVSVTAEDEGTQRLTCAVI   81 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEE--EE-----CSS----EEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceE--ee-----CCC----eEEEEeecccccccCCcceEEEEEe
Confidence            35788999999999988 7777  899999998875411  10     111    22222   336677774  999999


Q ss_pred             cCCCceeEEEEEEEE
Q psy9150          79 NMYNVDTRTFKTDFS   93 (97)
Q Consensus        79 ~~~g~~~~~~~~~~~   93 (97)
                      |..|.......|.+.
T Consensus        82 n~~~~~~~~~~l~V~   96 (265)
T 2oz4_A           82 LGNQSQETLQTVTIY   96 (265)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             cCCCCcEEEEEEEEe
Confidence            999887777766664

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.07  E-value=3.2e-10  Score=60.29  Aligned_cols=75  Identities=15%  Similarity=0.236  Sum_probs=51.9

Q ss_pred             EcCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          10 VLGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      ..|+.+.|.|.+.|. |.| .+.|++++..+.... ..... ........+.|.|..+...| |.|.|.+.|..|.....
T Consensus       140 ~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~-~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~  216 (222)
T 1q9r_B          140 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT-FPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  216 (222)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-EEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCCcEEEEEEEccEECCCCEEEEecCCeEcceEe-ccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEE
Confidence            368899999999885 888 999999887653211 11100 00111224578898888888 99999999998875443

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.07  E-value=4.9e-09  Score=58.24  Aligned_cols=69  Identities=10%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             ceeeEEEcCCeEEEEEEecc-------cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKG-------KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~-------~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +.+..+..|+.+.|.|.+.+       .|.|.+.|+++|..+.... ....    ...  .+.|.|..+... .|.|.|.
T Consensus        11 P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~-~~~~----~~~--~~~L~i~~~~~~-~g~Y~C~   82 (303)
T 1i1r_A           11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTII----NRT--ASSVTFTDIASL-NIQLTCN   82 (303)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGG-CEEE----ETT--EEEEEECSCCCS-EEEEEEE
T ss_pred             cCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhh-eeee----CCc--EEEEEEcCcCCC-ceEEEEe
Confidence            45677899999999999986       4778999999999886432 2211    111  357999999887 4999999


Q ss_pred             EEcC
Q psy9150          77 ADNM   80 (97)
Q Consensus        77 ~~~~   80 (97)
                      +.+.
T Consensus        83 a~~~   86 (303)
T 1i1r_A           83 ILTF   86 (303)
T ss_dssp             EEET
T ss_pred             cccC
Confidence            9874

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.07  E-value=1.3e-09  Score=59.00  Aligned_cols=74  Identities=12%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-----CCeeEEEeCC--EEc---c---------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-----RPHITWFKDG--VEL---Y---------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-----~p~i~w~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +..+.+.+|+.+.|.|.+.+.+     .+.+.|++++  ...   .         ...++...     ......+|.|.+
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~  115 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGS-----GSGTDFTLRISR  115 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESS
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEE-----ccCCEEEEEECC
Confidence            4567789999999999998877     6889999843  111   0         01111111     011134799999


Q ss_pred             CCCCCCEEEEEEEEcCCC
Q psy9150          65 ATQMDAGIYECYADNMYN   82 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.+|.|.|.|.+.+..+
T Consensus       116 v~~~D~G~Y~C~~~~~~~  133 (252)
T 3bkj_L          116 VEAEDLGVYYCFQASLVP  133 (252)
T ss_dssp             CCGGGCEEEEEEECSBSS
T ss_pred             CCcccCEEEEEEEEcCCc
Confidence            999999999999988755

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.06  E-value=7.2e-10  Score=53.17  Aligned_cols=87  Identities=13%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeC-CEEccc---c-ceeeEE-----EEEecCceEEEEEEEccCCCCCCE
Q psy9150           3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKD-GVELYT---H-MYVNLH-----EWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~-~~~~~~---~-~~~~~~-----~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      +...+.+.+|+.+.|.|.. .+.+.+.+.|++. +..+..   . ......     .....  ....+|.|.+++.+|+|
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG   86 (110)
T 2ptt_A            9 SIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE--ENNGALHISNVRKEDKG   86 (110)
T ss_dssp             CCCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC--TTTCCEEESSCCGGGCE
T ss_pred             CCCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe--CCCccEEECCCCcccCe
Confidence            3456789999999999998 6777789999983 222110   0 000000     00000  01347999999999999


Q ss_pred             EEEEEEEcCCCceeEEEEEEE
Q psy9150          72 IYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        72 ~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      .|.|.+.+.. .....+.|.|
T Consensus        87 ~Y~C~v~~~~-~~~~~~~L~V  106 (110)
T 2ptt_A           87 TYYMRVLRET-ENELKITLEV  106 (110)
T ss_dssp             EEEEEEESSS-BCCEEEEEEE
T ss_pred             EEEEEEEcCC-CcEEEEEEEE
Confidence            9999998765 2333444443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.06  E-value=5.6e-09  Score=56.96  Aligned_cols=73  Identities=12%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------c----ceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------H----MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~----~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ++..+.+.+|+.+.|.|.+. .+.+.+.|++  .+.....            .    .++.+.    .......+|.|.+
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~  106 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAV----RPEGSVSTLKIQR  106 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEE----CTTSSSEEEEECS
T ss_pred             CCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEE----ecCCCEEEEEECC
Confidence            34567899999999999986 5778899998  2221110            0    111111    1112245799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|.|.|.|.+.+.
T Consensus       107 v~~~D~G~Y~C~~~~~  122 (268)
T 3pl6_D          107 TERGDSAVYLCATSAL  122 (268)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             CCcccCEEEEEEEecC
Confidence            9999999999999974

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.06  E-value=3.2e-10  Score=67.69  Aligned_cols=82  Identities=15%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             ceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEcccc------------ceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTH------------MYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ...+.+..|+.+.|.|.+ .+.|.+.+.|++++..+...            .+...     ..   ..+|.|.+++..|.
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~-----~~---~~~L~i~~v~~~D~  444 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV-----LP---NGSLFLPAVGIQDE  444 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE-----CT---TSCEEESSCCGGGC
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE-----cC---CceEEEeccccccC
Confidence            456788999999999999 78899999999976422111            01111     00   23699999999999


Q ss_pred             EEEEEEEEcCCCce-eEEEEEEEE
Q psy9150          71 GIYECYADNMYNVD-TRTFKTDFS   93 (97)
Q Consensus        71 g~y~c~~~~~~g~~-~~~~~~~~~   93 (97)
                      |.|+|.+.|..+.. ...+.|.|.
T Consensus       445 G~Y~C~~~n~~~~~~~~~~~l~V~  468 (581)
T 3o3u_N          445 GIFRCQAMNRNGKETKSNYRVRVY  468 (581)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCceeEEEEEEEEE
Confidence            99999999998876 666666654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.06  E-value=5.5e-10  Score=58.88  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             cCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEE
Q psy9150          11 LGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK   89 (97)
Q Consensus        11 ~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~   89 (97)
                      .+....+.|.. .+.|++.+.|++++............  ........+.|.|..+...|.|.|+|.+.|..+.......
T Consensus       135 ~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~  212 (225)
T 4fmk_A          135 PQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGI--QAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLP  212 (225)
T ss_dssp             SSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECS--STTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEE
T ss_pred             ceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEe--cCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEE
Confidence            34555565655 56788889999876544321111100  0011112457999999999999999999999888766655


Q ss_pred             EEEEE
Q psy9150          90 TDFSI   94 (97)
Q Consensus        90 ~~~~~   94 (97)
                      +.+.+
T Consensus       213 v~l~V  217 (225)
T 4fmk_A          213 VTLSV  217 (225)
T ss_dssp             EECCB
T ss_pred             EEEEE
Confidence            55544

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.06  E-value=7.9e-10  Score=60.59  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCe-eEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE-cCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD-NMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~-~~~   81 (97)
                      ....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.........    .    ...|.|..+...|.|.|.|.+. +..
T Consensus        97 ~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~v~~~d~G~Y~C~a~~~~~  168 (289)
T 3ejj_X           97 QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS----P----WRGFIIRKAKVLDSNTYVCKTMVNGR  168 (289)
T ss_dssp             SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE----T----TTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC----C----CCCEEEeecccccCEEEEEEEEeCCC
Confidence            466788999999999998877665 99986 66666544333221    1    2368999999999999999998 444


Q ss_pred             CceeEEEEEEEE
Q psy9150          82 NVDTRTFKTDFS   93 (97)
Q Consensus        82 g~~~~~~~~~~~   93 (97)
                      +.....+.|.+.
T Consensus       169 ~~~~~~~~l~V~  180 (289)
T 3ejj_X          169 ESTSTGIWLKVN  180 (289)
T ss_dssp             EEECCCEEEEEE
T ss_pred             ccccccEEEEEE
Confidence            444555555543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.06  E-value=1.3e-11  Score=65.12  Aligned_cols=75  Identities=12%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             cCCeEEEEEEeccc-CC-CeeEEEeCCEEccccceeeEEEEEecC-ceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          11 LGHKIVFICMAKGK-PR-PHITWFKDGVELYTHMYVNLHEWHYGT-DRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        11 ~g~~~~l~c~~~~~-~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      .|+.+.|.|.+.+. |+ +.+.|+++|..+.......... .... ....+.|.|..+..+|.|.|+|.+.|..+....
T Consensus       127 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          127 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPS-KQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCB-CSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             cCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCce-ecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            57889999999887 44 7899999998876432110000 0000 112356888888899999999999998876443

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.06  E-value=5.1e-10  Score=64.91  Aligned_cols=75  Identities=20%  Similarity=0.277  Sum_probs=53.7

Q ss_pred             EcCCeEEEEEEecccC----CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          10 VLGHKIVFICMAKGKP----RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~----~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ..|+.+.|.|.+.|.+    .+.+.|++++..+...................+.|.|..+...|.|.|.|.+.|..+..
T Consensus       253 ~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          253 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             ecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            5689999999999874    35899999998875432111111000111235679999999999999999999998865

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.05  E-value=2.2e-10  Score=63.66  Aligned_cols=89  Identities=12%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCC-----eeEEEeCCEEccc-------------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRP-----HITWFKDGVELYT-------------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p-----~i~w~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.++.+..|+.+.|.|.+.+.+.+     .+.|++++.....             ..+...............+|.|..
T Consensus         6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            3456778899999999999876655     3899997753211             111111000000111234699999


Q ss_pred             CCCCCCEEEEEEEEc-CCCceeEEEEEE
Q psy9150          65 ATQMDAGIYECYADN-MYNVDTRTFKTD   91 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~-~~g~~~~~~~~~   91 (97)
                      ++.+|.|.|.|.+.+ ..+.....+.|.
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~  113 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLR  113 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEEC
T ss_pred             CChhhCEEEEEEEeeccCcceeeeeeee
Confidence            999999999998754 445555555443

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.05  E-value=1.1e-09  Score=52.72  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--E---Eccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--V---ELYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  .   .+..         ..++...     ......+|.|.+++.+
T Consensus        10 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~v~~~   84 (111)
T 1i3g_L           10 SHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGS-----GSGTDFTLTISNVQSE   84 (111)
T ss_dssp             SCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             eCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEE-----cCCCEEEEEECCCCHH
Confidence            445678899999999999988777889999842  1   1110         1111111     0111457999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |+|.|.|.+.+.
T Consensus        85 DsG~Y~C~~~~~   96 (111)
T 1i3g_L           85 DLADYFCQQYSS   96 (111)
T ss_dssp             GCSEEEEEECSS
T ss_pred             HCEEEEEEEecC
Confidence            999999999875

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.05  E-value=3.1e-09  Score=57.75  Aligned_cols=75  Identities=13%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc----------------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT----------------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+.+|+.+.|.|.+.+.|  .+.+.|+++  +..+..                ..++.+..   .......+|.|..
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~   84 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISR---DTSKNQVFLKMNS   84 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEE---ETTTTEEEEEEES
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEE---ECCCCEEEEEECC
Confidence            345788999999999998875  688999984  221100                11121110   0011245799999


Q ss_pred             CCCCCCEEEEEEEEcCCC
Q psy9150          65 ATQMDAGIYECYADNMYN   82 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.+|.|.|.|.+.|..|
T Consensus        85 v~~~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           85 LQTDDTGTYYCTRDLYGG  102 (257)
T ss_dssp             CCTTCCEEEEEEEESSSS
T ss_pred             CCcccCEEEEEEEccccc
Confidence            999999999999998854

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.05  E-value=2e-09  Score=52.93  Aligned_cols=85  Identities=20%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccC----CCeeEEEeC--CEE---ccc---------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP----RPHITWFKD--GVE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ++..+.+.+|+.+.|.|.+.+.+    .+.+.|++.  +..   +..         ..++...     ......+|.|.+
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~sL~I~~   81 (126)
T 4ffy_L            7 SPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGS-----GSETDFTLTIDS   81 (126)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESS
T ss_pred             CCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEe-----cCCCEEEEEECC
Confidence            45578899999999999998766    567999983  211   110         1112111     011245799999


Q ss_pred             CCCCCCEEEEEEEEcCCCc-eeEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNV-DTRTFKTDF   92 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~-~~~~~~~~~   92 (97)
                      ++.+|.|.|.|.+.+.... ......|.|
T Consensus        82 v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V  110 (126)
T 4ffy_L           82 VETDDAATYYCQQNNEDPYTFGGGTKLEI  110 (126)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCcEECCCEEEEE
Confidence            9999999999999875432 223344444

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.05  E-value=1.5e-09  Score=59.82  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+.+.+|+.+.|.|.+.+.+ +.+.|++  ++..+..            ..++...     ......+|.|..++.+|.|
T Consensus       171 ~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~DsG  244 (282)
T 1qok_A          171 IMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGS-----GSGTSYSLTISRMEAEDAA  244 (282)
T ss_dssp             EEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCE
T ss_pred             EEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEe-----cCCCEEEEEEccCChhHCE
Confidence            55688999999999999988 8999999  5543310            1111111     0111457999999999999


Q ss_pred             EEEEEEEcCC
Q psy9150          72 IYECYADNMY   81 (97)
Q Consensus        72 ~y~c~~~~~~   81 (97)
                      .|.|.+.+..
T Consensus       245 ~Y~C~a~~~~  254 (282)
T 1qok_A          245 TYYCQQRSSY  254 (282)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEeeCC
Confidence            9999998754

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.05  E-value=4.7e-10  Score=59.98  Aligned_cols=76  Identities=12%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             cCCeEEEEEEeccc-C-CCeeEEEeCCEEccccceeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          11 LGHKIVFICMAKGK-P-RPHITWFKDGVELYTHMYVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        11 ~g~~~~l~c~~~~~-~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      .|+.+.|.|.+.+. | .+.+.|++++..+...............  ....+.|.+.....+|.|.|+|.+.|.......
T Consensus       149 ~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  228 (237)
T 3sob_L          149 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  228 (237)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             cCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence            46789999999874 4 4799999999887642100000000011  112456888888889999999999998865443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.05  E-value=2.8e-10  Score=61.57  Aligned_cols=74  Identities=12%  Similarity=0.185  Sum_probs=50.0

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .|..+.|.|.+.+.+++  .+.|+++|..+...............  ....+.|.|..+..+|.|.|.|.+.|.....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            36789999999885443  59999999877654100000000001  1125679999999999999999999987654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.05  E-value=1.7e-09  Score=58.33  Aligned_cols=75  Identities=15%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-----CCeeEEEeC--CEEc---cc---------cceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-----RPHITWFKD--GVEL---YT---------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-----~p~i~w~~~--~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ++..+.+.+|+.+.|.|.+.+.+     .+.+.|+++  +...   ..         ..++...     ......+|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~   81 (247)
T 1svz_A            7 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGS-----GSGTDFTLKIS   81 (247)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEES
T ss_pred             cCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEec-----cCCCEEEEEEC
Confidence            34577899999999999998877     688999983  2211   00         1112111     01113479999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|.|.|.|.+.|..+
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~  100 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFP  100 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSS
T ss_pred             CCCHHHCEEEEEEEccCCc
Confidence            9999999999999988754

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.05  E-value=1e-09  Score=58.83  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=50.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc---------------ccceeeEEEEEecCceEEEEEEEccC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY---------------THMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ++..+.+.+|+.+.|.|. .+.+.+.+.|+++  +....               ...++.+.    .......+|.|..+
T Consensus         6 ~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            6 SPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS----RPSQENFSLILELA   80 (238)
T ss_dssp             ECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEE----CCSSSBCEEEESSC
T ss_pred             CccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEE----ccCCceEEEEEecC
Confidence            456788999999999999 6788899999984  21110               01111111    01112347999999


Q ss_pred             CCCCCEEEEEEEEcCCC
Q psy9150          66 TQMDAGIYECYADNMYN   82 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~g   82 (97)
                      +.+|.|.|.|.+.+..|
T Consensus        81 ~~~DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQ   97 (238)
T ss_dssp             CGGGCEEEEEEEEC---
T ss_pred             CcccCeeEEEEEEeCCC
Confidence            99999999999998765

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.04  E-value=2e-09  Score=52.42  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             ceeeEEEcCCeEEEEEEeccc----CCCeeEEEeCCE----E--cc-c-------------cceeeEEEEEecCceEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK----PRPHITWFKDGV----E--LY-T-------------HMYVNLHEWHYGTDRIKSK   59 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~----~~p~i~w~~~~~----~--~~-~-------------~~~~~~~~~~~~~~~~~~~   59 (97)
                      +..+.+..|+.+.|.|.+...    +.+.+.|++.+.    .  +. .             ..+..+.   ........+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~s   82 (124)
T 1neu_A            6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV---GDPSWKDGS   82 (124)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEEC---CBGGGTBCC
T ss_pred             CCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEe---cCCcCCeEE
Confidence            456789999999999998532    467799997431    0  10 0             0001000   000011357


Q ss_pred             EEEccCCCCCCEEEEEEEEcCCCc--eeEEEEEEEE
Q psy9150          60 IEIDPATQMDAGIYECYADNMYNV--DTRTFKTDFS   93 (97)
Q Consensus        60 l~i~~~~~~~~g~y~c~~~~~~g~--~~~~~~~~~~   93 (97)
                      |.|.+++.+|.|.|.|.+.+..+.  ....+.|.|.
T Consensus        83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~  118 (124)
T 1neu_A           83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEe
Confidence            999999999999999999987765  3445555553

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.03  E-value=2.7e-10  Score=60.14  Aligned_cols=75  Identities=15%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             EcCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          10 VLGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      ..|+.+.|.|.+.+. |.| .+.|++++..+..........  .......+.|.|.....++ |.|+|.+.|..|.....
T Consensus       131 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          131 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEE--TTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccC--CCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            468899999999887 778 999999886542111111100  0111124568888888766 99999999998876543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.03  E-value=5.6e-09  Score=55.71  Aligned_cols=78  Identities=9%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             EcCCeEEEEEEeccc-CCC-eeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCC--CCCEEEEEEEEcCCCce
Q psy9150          10 VLGHKIVFICMAKGK-PRP-HITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ--MDAGIYECYADNMYNVD   84 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~p-~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~~~g~y~c~~~~~~g~~   84 (97)
                      ..|+.+.|.|.+.+. |.| .+.|++ +|..+.......... ........+.|.|.....  .|.|.|.|.+.|..+..
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEE-ETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccc-cCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            368899999999887 666 899999 887765310000000 001111245677877765  77899999999999876


Q ss_pred             eEEE
Q psy9150          85 TRTF   88 (97)
Q Consensus        85 ~~~~   88 (97)
                      ....
T Consensus       218 ~~~~  221 (223)
T 1dee_B          218 EKDV  221 (223)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            5543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.03  E-value=1.7e-09  Score=58.65  Aligned_cols=73  Identities=14%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCC-CeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR-PHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ..+.+.+|+.+.|.|.+.+.+. +.+.|++.  +....            ...++...     ......+|.|..++.+|
T Consensus       157 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D  231 (256)
T 3juy_B          157 GTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS-----GSGTDFTLTITRVEPED  231 (256)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             CeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE-----ccCCEEEEEECCCCHhH
Confidence            4567889999999999988776 89999982  22211            01111111     01114469999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.+...
T Consensus       232 sG~Y~C~~~~~~~  244 (256)
T 3juy_B          232 FALYYCQVYGASS  244 (256)
T ss_dssp             CSEEEEEECCSSC
T ss_pred             CEEEEEEEeeCCC
Confidence            9999999988544

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.03  E-value=3.3e-10  Score=59.83  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             EEcCCeEEEEEEecccC----CCeeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           9 YVLGHKIVFICMAKGKP----RPHITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~----~p~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.+|+.+.|.|.+.+.+    .+.+.|++++..+...... . .......  .....|.|..++..|.|.|.|.+.|..+
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~   92 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK-P-REEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAF   92 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE-C-CCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC-C-CcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCC
Confidence            56899999999998874    2489999998766432100 0 0000111  1245789999999999999999999887


Q ss_pred             ce
Q psy9150          83 VD   84 (97)
Q Consensus        83 ~~   84 (97)
                      ..
T Consensus        93 ~~   94 (207)
T 2vol_A           93 PA   94 (207)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.03  E-value=5.9e-10  Score=58.81  Aligned_cols=71  Identities=14%  Similarity=0.295  Sum_probs=51.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|+++  +..+.            ...++....     ......|.|.+++.+|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D   80 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-----SGTTATLTISGAQPED   80 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGG
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-----eCCEEEEEECcCCccc
Confidence            4567899999999999998888888999983  32221            011222110     1113479999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      .|.|.|.+.|
T Consensus        81 ~G~Y~C~~~n   90 (212)
T 1nfd_E           81 EAAYYCLSSY   90 (212)
T ss_dssp             CSEEEEEEEE
T ss_pred             CEEEEEEEEc
Confidence            9999999996

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.03  E-value=1.8e-10  Score=61.55  Aligned_cols=78  Identities=13%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE-EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      .|+.+.|.|.+.+.+++  .+.|+++|..+........ ...........+.|.|..+..+|.|.|+|.+.|..+...+.
T Consensus       149 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          149 QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             TTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             cCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence            47789999999886543  8999999998764321100 00000001124578888888999999999999998876554


Q ss_pred             E
Q psy9150          88 F   88 (97)
Q Consensus        88 ~   88 (97)
                      +
T Consensus       229 ~  229 (234)
T 2j6e_L          229 V  229 (234)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.03  E-value=4.7e-10  Score=59.49  Aligned_cols=76  Identities=13%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             EcCCeEEEEEEecc-cCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          10 VLGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        10 ~~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      ..|+.+.|.|.+.+ .|.| .+.|++++..+......... . .......+.|.|..... |.|.|+|.+.|..+.....
T Consensus       137 ~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~-~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~  213 (219)
T 1c1e_H          137 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL-Q-SDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVD  213 (219)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE-S-SSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEE
T ss_pred             ccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcc-c-CCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEE
Confidence            46889999999988 8888 99999988764311100000 0 01111245678854444 5599999999988765443


Q ss_pred             E
Q psy9150          88 F   88 (97)
Q Consensus        88 ~   88 (97)
                      .
T Consensus       214 ~  214 (219)
T 1c1e_H          214 K  214 (219)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.03  E-value=3.6e-09  Score=56.80  Aligned_cols=81  Identities=9%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             cC-CeEEEEEEeccc-CCC-eeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCC--CCCEEEEEEEEcCCCce
Q psy9150          11 LG-HKIVFICMAKGK-PRP-HITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ--MDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g-~~~~l~c~~~~~-~~p-~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~~~g~y~c~~~~~~g~~   84 (97)
                      .| +.+.|.|.+.+. |.| .+.|++ +|..+.......... ........+.|.|.....  .|.|.|.|.+.|..+..
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~  217 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK  217 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEE-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccc-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCc
Confidence            56 889999999886 666 899999 887765410000000 001111245788888776  77899999999999886


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      .....+.+
T Consensus       218 ~~~~~i~~  225 (232)
T 1dn0_B          218 EKNVPLPV  225 (232)
T ss_dssp             EEEEECCC
T ss_pred             ceeEecCC
Confidence            65554443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.02  E-value=2.8e-09  Score=57.82  Aligned_cols=74  Identities=16%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             ceeeEEEcCCeEEEEEEecc--cCCCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKG--KPRPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      ...+.+.+|+.+.|.|.+.+  .+.+.+.|++.  +.....                 ..++.+..   .......+|.|
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I   89 (256)
T 3juy_B           13 SGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTA---DTSANTAYMEL   89 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEE
T ss_pred             cCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEE---ecCCCEEEEEE
Confidence            45788999999999999977  36778999972  211110                 01111110   01112346999


Q ss_pred             ccCCCCCCEEEEEEEEcC
Q psy9150          63 DPATQMDAGIYECYADNM   80 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~   80 (97)
                      ..++.+|.|.|.|.+.+.
T Consensus        90 ~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           90 RSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             CSCCGGGCEEEEEEECCC
T ss_pred             CCCCcccCEEEEEeEEec
Confidence            999999999999999986

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.02  E-value=1.5e-09  Score=58.82  Aligned_cols=72  Identities=14%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+..                 ..++.+..   .......+|.|..+
T Consensus       144 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v  220 (256)
T 3ux9_B          144 GLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISR---DNSKNTLYLQMNSL  220 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             eEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEe---cCCCCEEEEEECCC
Confidence            3477899999999998766  788999985  322110                 01222111   01112446999999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|.|.|.|.+.|..
T Consensus       221 ~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          221 RAEDTAVYYCARYIDF  236 (256)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             ChhhCEEEEEEEEcCC
Confidence            9999999999999863

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.02  E-value=9.9e-10  Score=60.84  Aligned_cols=75  Identities=21%  Similarity=0.243  Sum_probs=53.2

Q ss_pred             EcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          10 VLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        10 ~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      ..++.+.+.|.. .+.|.|.+.|++++..+.......    ........+.|.+..+...|.|.|+|.+.|..+......
T Consensus       127 ~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~----~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  202 (308)
T 4fom_A          127 GGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF----PNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRY  202 (308)
T ss_dssp             TCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC----TTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred             cCCceEEEEEEecCCcCCceEEEEECCccccccccee----eeecccccccceEEeeeecCCccEEEEEEccCCCCceEE
Confidence            356788999975 688999999999887764322110    001112245789999999999999999999887654433

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.01  E-value=4.3e-10  Score=54.11  Aligned_cols=73  Identities=22%  Similarity=0.351  Sum_probs=50.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccC----CCeeEEEeC--CEE---ccc---------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP----RPHITWFKD--GVE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ++..+.+.+|+.+.|.|.+.+.+    .+.+.|++.  +..   +..         ..++...     ......+|.|.+
T Consensus         7 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~   81 (111)
T 1j05_L            7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT-----GSRTDFTLIIDP   81 (111)
T ss_dssp             ECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESS
T ss_pred             eCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEE-----ccCCEEEEEECC
Confidence            34567889999999999998766    467999984  221   110         1112111     011135799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|+|.|.|.+.+.
T Consensus        82 v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           82 VEADDVATYYCQQTNE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCcccCEEEEEEEecC
Confidence            9999999999999875

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.01  E-value=5.2e-09  Score=56.21  Aligned_cols=72  Identities=17%  Similarity=0.328  Sum_probs=49.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEE------------ccc---cceeeEEEEEecCceEEEEEEEccC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVE------------LYT---HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~------------~~~---~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ++..+.+.+|+.+.|.|.+.+ +.+.+.|++.  +..            ...   ..++.+..    ......+|.|.++
T Consensus         8 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v   82 (240)
T 3q5y_A            8 SPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ----FDDYHSEMNMSAL   82 (240)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEE----CTTSCEEEEECSC
T ss_pred             CcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEe----CCCCEEEEEECcC
Confidence            345788999999999999876 7889999982  111            000   01111110    1112457999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.|.|.|.+.+
T Consensus        83 ~~~D~G~Y~C~~~~   96 (240)
T 3q5y_A           83 ELEDSAMYFCASSL   96 (240)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ChhHCEEEEEEEcc
Confidence            99999999999973

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.01  E-value=4e-09  Score=57.17  Aligned_cols=68  Identities=13%  Similarity=-0.001  Sum_probs=49.6

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++..+......      .........|.|..++..|.|.|.|.+.+..+
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   84 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   84 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS------SCTTCCEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc------ccCCcceeEEEecCCCcccCeEEEEEEecCCc
Confidence            6788999999999865 45689999999765421000      00111245799999999999999999987644

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.01  E-value=5.2e-10  Score=62.30  Aligned_cols=64  Identities=14%  Similarity=0.232  Sum_probs=49.0

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ..+.+|+.+.|.|.+.+. .+.+.|++++..+......         ......|.|..++..|.|.|.|.+.+.
T Consensus        33 ~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~---------~~~~~~L~I~~v~~~D~G~Y~C~a~~~   96 (316)
T 3vh8_G           33 AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG---------RIFQESFNMSPVTTAHAGNYTCRGSHP   96 (316)
T ss_dssp             SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH---------CCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred             CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC---------CcceEEEEECCCCcccCeEEEEEEEcC
Confidence            457799999999999887 6889999998765432110         011347899999999999999998764

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.01  E-value=1.2e-09  Score=57.64  Aligned_cols=71  Identities=11%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .|+.+.|.|.+.|.+++  .+.|+++|..+..........  ....  ...+.|.+......+.|.|+|.+.|....
T Consensus       123 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~--~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM--DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE--CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             cCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE--CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            37899999999885443  799999999875322111110  1111  22445666666566789999999998764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.01  E-value=2.2e-09  Score=57.87  Aligned_cols=73  Identities=15%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc-----------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY-----------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.|  .+.+.|+++  +....                 ...++.+..   .......+|.|.
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~   86 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISR---DNSKNTLYLQMN   86 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE---ETTTTEEEEEEC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEE---eCCCCEEEEEEC
Confidence            357788999999999998876  578999983  21110                 011222211   011124579999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      +++.+|.|.|.|.+.|.
T Consensus        87 ~v~~~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           87 SLRAEDTAVYYCARDRS  103 (247)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCHHHCEEEEEeeecc
Confidence            99999999999999987

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.01  E-value=3.3e-09  Score=51.25  Aligned_cols=90  Identities=16%  Similarity=0.230  Sum_probs=53.3

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEeCC-------EEc-cccc-eeeEE---EEEec--CceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFKDG-------VEL-YTHM-YVNLH---EWHYG--TDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~~-------~~~-~~~~-~~~~~---~~~~~--~~~~~~~l~i~~~~   66 (97)
                      .+..+.+.+|+.+.|.|.....  ....+.|++..       ..+ .... .....   .....  ......+|.|.+++
T Consensus         3 sp~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   82 (115)
T 2or7_A            3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTV   82 (115)
T ss_dssp             ---CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCC
T ss_pred             CccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCC
Confidence            4567889999999999998643  34679999864       111 1000 00000   00000  11123479999999


Q ss_pred             CCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150          67 QMDAGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      .+|+|.|.|.+..........+.|.|
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V  108 (115)
T 2or7_A           83 VGDGGPYCCVVEIPGAFHFVDYMLEV  108 (115)
T ss_dssp             GGGCEEEEEEECCTTSCEEEEEEEEE
T ss_pred             HHHCEEEEEEEECCCceeEEEEEEEE
Confidence            99999999999876544444444443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.01  E-value=9e-10  Score=58.10  Aligned_cols=75  Identities=12%  Similarity=0.224  Sum_probs=49.3

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .|..+.|.|.+.+.+++  .+.|+++|..+...............  ....+.|.+......|.|.|+|.+.|......
T Consensus       126 ~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~  204 (213)
T 3r06_A          126 GTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA  204 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred             CCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence            46789999999886643  79999999887643100000000011  11244677888888889999999999875543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.01  E-value=1e-09  Score=59.51  Aligned_cols=74  Identities=18%  Similarity=0.287  Sum_probs=51.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC----eeEEEeC--CEEcc---c---------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP----HITWFKD--GVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p----~i~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+.+|+.+.|.|.+.+.+.+    .+.|+++  +....   .         ..++...     ......+|.|..++
T Consensus       141 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~  215 (253)
T 3uzq_A          141 ASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGS-----GSRTDFTLTINPVE  215 (253)
T ss_dssp             SEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCC
T ss_pred             CeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEe-----CCCCEEEEEECCCC
Confidence            35678899999999999988876    8999983  22211   0         0111110     01114479999999


Q ss_pred             CCCCEEEEEEEEcCCCc
Q psy9150          67 QMDAGIYECYADNMYNV   83 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~   83 (97)
                      .+|.|.|.|.+.|..+.
T Consensus       216 ~~DsG~Y~C~~~n~~~~  232 (253)
T 3uzq_A          216 ADDVATYFCQRSNEVPW  232 (253)
T ss_dssp             GGGCEEEEEEECSSSSC
T ss_pred             HHHCEEEEEEEccCCCc
Confidence            99999999999986543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.00  E-value=8.2e-09  Score=56.18  Aligned_cols=76  Identities=18%  Similarity=0.273  Sum_probs=52.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc-----------------ccceeeEEEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY-----------------THMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+..   .......+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I   83 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTV---DKPSSTAYMQL   83 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEE---ETTTTEEEEEE
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEE---ecCCCEEEEEE
Confidence            3567889999999999998875  678999983  22210                 011222111   00112457999


Q ss_pred             ccCCCCCCEEEEEEEEcCCC
Q psy9150          63 DPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..++.+|.|.|.|.+.+..|
T Consensus        84 ~~v~~~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           84 SSLTSEDSAVYYCARYDYYG  103 (256)
T ss_dssp             CSCCGGGCEEEEEEECCTTS
T ss_pred             CcCChhhCEEEEEEEeeccC
Confidence            99999999999999999865

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.00  E-value=1.9e-09  Score=60.17  Aligned_cols=74  Identities=16%  Similarity=0.062  Sum_probs=53.2

Q ss_pred             ceeeEEEcCCeEEEEEEeccc-----CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK-----PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~-----~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      +.+..+..|+.+.|.|.+.+.     +.+.+.|.+++..+.... ...    .......+.|.|.++...|.|.|.|.+.
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~-~~~----~~~~~~~~~L~i~~~~~~d~g~y~c~~~   81 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGR-QQR----LSDGTQESIITLPHLNHTQAFLSCSLNW   81 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCE-ECC----CSSSCCCEEEEESCCCSSEEEEEEEEES
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccc-eEE----EecCeEEEEEEEeccCCCccceEEeeec
Confidence            346678899999999999886     578899999998775321 110    0111112579999999999999999876


Q ss_pred             cCCC
Q psy9150          79 NMYN   82 (97)
Q Consensus        79 ~~~g   82 (97)
                      +..+
T Consensus        82 ~~~~   85 (313)
T 2d9q_B           82 GNSL   85 (313)
T ss_dssp             SSSE
T ss_pred             CCCc
Confidence            5433

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.00  E-value=4.8e-09  Score=50.27  Aligned_cols=74  Identities=11%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             ceeeEEEcCCeEEEEEE-ecccC-CCeeEEEeCCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICM-AKGKP-RPHITWFKDGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~-~~~~~-~p~i~w~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|. ..+.+ .+.+.|++......    .        ..++....   .......+|.|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~v~~~D   83 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSI---DRSSNSASLTISGLKTED   83 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEE---ETTTTEEEEEECSCCGGG
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEe---ccCCCEEEEEECCCChhh
Confidence            35778999999999999 76654 47899998652110    0        11222110   012224579999999999


Q ss_pred             CEEEEEEEEcC
Q psy9150          70 AGIYECYADNM   80 (97)
Q Consensus        70 ~g~y~c~~~~~   80 (97)
                      +|.|.|.+.+.
T Consensus        84 sG~Y~C~~~~~   94 (109)
T 1pew_A           84 EADYYCQSYDA   94 (109)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEEeC
Confidence            99999998874

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.00  E-value=2.4e-09  Score=56.63  Aligned_cols=74  Identities=11%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             ceeeEEEcCCeEEEEEEe-cccC-CCeeEEEeCC--EEcc------------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           4 HFDYEYVLGHKIVFICMA-KGKP-RPHITWFKDG--VELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~-~~~~-~p~i~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +..+.+.+|+.+.|.|.+ .+.+ .+.+.|++++  ..+.            ...++....     .....+|.|..++.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~   81 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-----SGTSATLGITGLQT   81 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCG
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-----cCCEEEEEECCCCc
Confidence            356889999999999995 4443 5789999843  2110            011221110     11144799999999


Q ss_pred             CCCEEEEEEEEcCCC
Q psy9150          68 MDAGIYECYADNMYN   82 (97)
Q Consensus        68 ~~~g~y~c~~~~~~g   82 (97)
                      .|.|.|.|.+.|..+
T Consensus        82 ~D~G~Y~C~~~~~~~   96 (216)
T 2xzc_L           82 GDEADYYCGTWDSSL   96 (216)
T ss_dssp             GGCEEEEEEEECTTS
T ss_pred             ccCEEEEEEEEeCCC
Confidence            999999999999876

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.00  E-value=5.8e-09  Score=56.52  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=51.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEccc-----------------cceeeEEEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELYT-----------------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|++  .+..+..                 ..++....   .......+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I   84 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITA---DTSSNTAYLHL   84 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEE
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEe---ecCCCeEEEEe
Confidence            3567888999999999998744  77899998  2211110                 01111110   01111346999


Q ss_pred             ccCCCCCCEEEEEEEEcCCCc
Q psy9150          63 DPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+|.|.|.|.+.+..+.
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~  105 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFA  105 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCC
T ss_pred             CCCCcccCEEEEEEEeeCCcc
Confidence            999999999999999985544

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.00  E-value=4.9e-10  Score=60.60  Aligned_cols=76  Identities=17%  Similarity=0.176  Sum_probs=51.8

Q ss_pred             EEcCCeEEEEEEeccc---CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGK---PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~---~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +.+|+.+.|.|.+.+.   |.+ .+.|++++..+.....................|.|..++.+|.|.|.|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            4579999999999887   666 899999876554221100000000111234579999999999999999999987753

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.00  E-value=3.4e-09  Score=55.90  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc----------------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY----------------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +....                ...++.+...   ......+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~   84 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD---TSKNQYYLDLNS   84 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEec---CCCCEEEEEECC
Confidence            456788999999999998765  478999984  22211                0112221110   011134899999


Q ss_pred             CCCCCCEEEEEEEEcCC
Q psy9150          65 ATQMDAGIYECYADNMY   81 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~   81 (97)
                      ++.+|.|.|.|.+.+..
T Consensus        85 v~~~D~G~Y~C~~~~~~  101 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD  101 (210)
T ss_dssp             CCGGGCEEEEEEETTSS
T ss_pred             CCcccCEEEEEEEecCc
Confidence            99999999999998853

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.99  E-value=3.1e-09  Score=58.44  Aligned_cols=73  Identities=14%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEcc-----------------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELY-----------------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|+++.  ....                 ...++.+..    ......+|.|.+
T Consensus        31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~----~~~~~~sL~I~~  106 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINH----ASLTLSTLTVTS  106 (279)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEE----CSSSEEEEEESS
T ss_pred             CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEe----CCCCEEEEEEcc
Confidence            45678999999999999988888899999843  1110                 011122110    012245899999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|.|.|.|.+.+.
T Consensus       107 v~~~D~G~Y~C~~~~~  122 (279)
T 2wbj_D          107 AHPEDSSFYICSARDL  122 (279)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCccCCEEEEEEEccc
Confidence            9999999999999984

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.99  E-value=1.2e-08  Score=54.51  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc-----------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY-----------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..+.                 ...++.+...   ......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~   84 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRD---DLEDFVYLQMH   84 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEE---TTTTEEEEEEC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEec---CCCCEEEEEEC
Confidence            356789999999999998766  678999983  22110                 0112221110   01124579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|.|.|.|.+.+..|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           85 KMRVEDTAIYYCARKGSDR  103 (225)
T ss_dssp             SCCGGGCEEEEEEEECCSS
T ss_pred             CCChhhCEEEEEEEecCCC
Confidence            9999999999999998764

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.99  E-value=3.3e-09  Score=56.36  Aligned_cols=75  Identities=13%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc------c-------------cceeeEEEEEecCceEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY------T-------------HMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~------~-------------~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +....      .             ..++.+...   ......+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~   84 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRD---NSQSILYLQ   84 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEE---TTTTEEEEE
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEE---CCCCeEEEE
Confidence            356788999999999998765  678999983  22110      0             011221110   011145799


Q ss_pred             EccCCCCCCEEEEEEEEcCCC
Q psy9150          62 IDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      |..++..|.|.|.|.+.+..+
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~  105 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGY  105 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSS
T ss_pred             ECcCCcccCeEEEEEEeccCC
Confidence            999999999999999998654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.99  E-value=8.8e-09  Score=56.35  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ..+.+|+.+.|.|.+.+ +.+.+.|++++..+.......    ..........|.|..++..|.|.|.|.+.+.
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~   84 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIG----EHHDGVSKANFSIGPMMQDLAGTYRCYGSVT   84 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEEC----BCCTTCEEEEEEECSCCTTTCEEEEEEEECS
T ss_pred             CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeee----eccCCCceEEEEeecCCcccCEEEEEeEecc
Confidence            56789999999999965 567899999886442111000    0011123567999999999999999999764

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.98  E-value=2.6e-09  Score=58.40  Aligned_cols=75  Identities=13%  Similarity=0.280  Sum_probs=52.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccC------CCeeEEEeC--CEEcc---c---------cceeeEEEEEecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP------RPHITWFKD--GVELY---T---------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~------~p~i~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      .+..+.+.+|+.+.|.|.+.+.+      .+.+.|++.  +..+.   .         ..++....     .....+|.|
T Consensus        11 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I   85 (264)
T 2gjj_A           11 TPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG-----SGTDFTLTI   85 (264)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEE
T ss_pred             cCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec-----CCCEEEEEE
Confidence            34567899999999999998877      678999983  32111   0         11222110     111357999


Q ss_pred             ccCCCCCCEEEEEEEEcCCC
Q psy9150          63 DPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..++.+|.|.|.|.+.+..+
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~  105 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYP  105 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSS
T ss_pred             CCCCHHHCEEEEEEEecCCc
Confidence            99999999999999988754

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.98  E-value=3.6e-09  Score=55.76  Aligned_cols=77  Identities=18%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-------CCCeeEEEeCCEEccc-----------------cceeeEEEEEecCceEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-------PRPHITWFKDGVELYT-----------------HMYVNLHEWHYGTDRIKS   58 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-------~~p~i~w~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~   58 (97)
                      .+..+.+.+|+.+.|.|.+.+.       +.+.+.|++++.....                 ..++...   ........
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~   82 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLL---GDVQKKNC   82 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEEC---SCGGGTBC
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEe---ccCCCCeE
Confidence            3557889999999999998653       5678999997642110                 0111110   00011134


Q ss_pred             EEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          59 KIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        59 ~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +|.|.+++..|.|.|.|.+.+..+
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~  106 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRD  106 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EEEEccCCHhhCceEEEEEEcCCC
Confidence            799999999999999999998763

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.98  E-value=2.7e-10  Score=60.92  Aligned_cols=74  Identities=11%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEc---c-------c--cceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VEL---Y-------T--HMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|+++.  ...   .       .  ..++..     .......+|.|.+++.+|
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v~~~D  104 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS-----SGYGTDFVFTIENMLSED  104 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCC-----CEEEEEEEEC-----CCC
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEe-----eccCCEEEEEECCCCHHH
Confidence            34567889999999999988888889999842  211   0       0  011111     011124479999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.+..+
T Consensus       105 ~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          105 VADYYCLQSDNLP  117 (233)
T ss_dssp             CSEEEEEECSSSS
T ss_pred             CEEEEEEEecCCc
Confidence            9999999988654

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.98  E-value=4.8e-09  Score=52.23  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeC---CEEcc----ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKD---GVELY----THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +..+.+.+|+.+.|.|...+. ...+.|++.   |....    ...++...     .......|.|..++.+|+|.|.|.
T Consensus        25 p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg~Y~C~   98 (134)
T 3kg5_A           25 PRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEES-----QNESLATLTIQGIRFEDNGIYFCQ   98 (134)
T ss_dssp             CSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEE-----ECSSEEEEEECSCCTTTCEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEE-----ccCCEEEEEECCCCcCcCEEEEEE
Confidence            456789999999999999765 577999986   32221    11223221     112256899999999999999999


Q ss_pred             EEcC
Q psy9150          77 ADNM   80 (97)
Q Consensus        77 ~~~~   80 (97)
                      +.+.
T Consensus        99 ~~~~  102 (134)
T 3kg5_A           99 QKCN  102 (134)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            9876

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.98  E-value=5.9e-09  Score=52.45  Aligned_cols=74  Identities=15%  Similarity=0.255  Sum_probs=51.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CE---Ecc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GV---ELY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+...+...+.|++.  +.   .+. .        ..++...     ......+|.|.+++.+
T Consensus         6 ~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~-----~~~~~~sL~I~~l~~~   80 (143)
T 3u6r_L            6 SPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGS-----GSGTDFTLTISNLEPE   80 (143)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEECSCCGG
T ss_pred             CCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEE-----ccCCEEEEEEccCccc
Confidence            45568889999999999998766778999983  22   111 0        1112111     1112457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        81 DsG~Y~C~~~~~~   93 (143)
T 3u6r_L           81 DFAVYYCQQRSDW   93 (143)
T ss_dssp             GCEEEEEEECSSB
T ss_pred             CCEEEEEEEecCC
Confidence            9999999987653

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.98  E-value=6.5e-10  Score=59.04  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             EcCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          10 VLGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      ..|+.+.|.|.+.+. |.| .+.|++++............. . ......+.|.|.....++ |.|.|.+.|..|...+.
T Consensus       138 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~-~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          138 TSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQ-S-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             SCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEE-T-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCccc-C-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            468899999999887 888 999999775311000000000 0 111124578888887766 99999999999987766


Q ss_pred             EEE
Q psy9150          88 FKT   90 (97)
Q Consensus        88 ~~~   90 (97)
                      +.+
T Consensus       215 ~~~  217 (220)
T 1pz5_B          215 KEI  217 (220)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.98  E-value=5.4e-09  Score=56.64  Aligned_cols=73  Identities=10%  Similarity=0.161  Sum_probs=51.2

Q ss_pred             eeeEEEcCCeEEEEEEeccc--CCCeeEEEeCC--EEcc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGK--PRPHITWFKDG--VELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ....            ...++...     ......+|.|..++.+
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~   84 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGS-----KSGTSASLAITGLQSE   84 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEE-----EETTEEEEEECSCCGG
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEE-----ccCCEEEEEECCCChh
Confidence            35788999999999999876  78889999832  1110            01122111     0111347999999999


Q ss_pred             CCEEEEEEEEcCCC
Q psy9150          69 DAGIYECYADNMYN   82 (97)
Q Consensus        69 ~~g~y~c~~~~~~g   82 (97)
                      |.|.|.|.+.+..+
T Consensus        85 DsG~Y~C~~~~~~~   98 (256)
T 3ux9_B           85 DEADYYCQVRDNNE   98 (256)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             hCEEEEEEEEECCC
Confidence            99999999998654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.97  E-value=9.7e-10  Score=58.07  Aligned_cols=55  Identities=25%  Similarity=0.446  Sum_probs=43.7

Q ss_pred             EcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150          10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..|+.+.|.|.+   |.+.+.|+++|..+.....            ...+|.|..+...|.|.|.|.+.+
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~------------~~~~L~i~~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFLTE------------DKKKWNLGSNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEEES------------SCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCCCC------------CCCeEEeCCCCcCCCEEEEEEecC
Confidence            579999999998   7889999999987753100            134688999999999999999654

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.97  E-value=3.2e-09  Score=53.63  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=51.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--E---Eccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--V---ELYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++..  .   .+..         ..++...     ......+|.|..++.+
T Consensus        22 ~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~-----~~~~~~sL~I~~v~~~   96 (146)
T 2yc1_B           22 SPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGS-----GSGTDFTLTISSLEPE   96 (146)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             eCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEe-----cCCCEEEEEECCCCHH
Confidence            345678999999999999987777889999832  1   1110         0112111     0111457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        97 DsG~Y~C~~~~~~  109 (146)
T 2yc1_B           97 DFAIYYCQQYRYS  109 (146)
T ss_dssp             GCSEEEEEECSSS
T ss_pred             HCEEEEEEEecCC
Confidence            9999999998753

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.97  E-value=1.3e-09  Score=52.68  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC------CeeEEEeCC--E---Ecc-c--------cceeeEEEEEecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR------PHITWFKDG--V---ELY-T--------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~------p~i~w~~~~--~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.      +.+.|++..  .   .+. .        ..++...     ......+|.|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I   81 (114)
T 1eeq_A            7 SPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGS-----GSGTDFTLTI   81 (114)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEE
T ss_pred             cCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEe-----ecCCEEEEEE
Confidence            355788999999999999987663      679999842  1   111 0        1112111     0111447999


Q ss_pred             ccCCCCCCEEEEEEEEcC
Q psy9150          63 DPATQMDAGIYECYADNM   80 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~   80 (97)
                      .+++.+|+|.|.|.+.+.
T Consensus        82 ~~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           82 SSLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             SSCCGGGCEEEEEEECSS
T ss_pred             CCCCcccCEEEEEEEeeC
Confidence            999999999999999875

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.97  E-value=9.4e-09  Score=54.55  Aligned_cols=75  Identities=13%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeCC--EE---ccc----------------cceeeEEEEEecCceEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKDG--VE---LYT----------------HMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~--~~---~~~----------------~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++++  ..   +..                ..++.+..   .......+|.
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~   84 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISR---DDSKSSVYLQ   84 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEE---EGGGTEEEEE
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEE---eCCCCeEEEE
Confidence            456889999999999998765  6889999842  21   100                01121110   0011234899


Q ss_pred             EccCCCCCCEEEEEEEEcCCC
Q psy9150          62 IDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      |.+++..|.|.|.|.+.+..+
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~  105 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVG  105 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTS
T ss_pred             EccCCHHHCEEEEEEEecCCc
Confidence            999999999999999998753

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.97  E-value=2.4e-09  Score=51.61  Aligned_cols=77  Identities=10%  Similarity=0.136  Sum_probs=49.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CE---Ecc-c-cceeeE------EEEEecCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GV---ELY-T-HMYVNL------HEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~---~~~-~-~~~~~~------~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      .+..+.+.+|+.+.|.|...+.+.+.+.|++.  +.   .+. . ......      ..+........ +|.|..++.+|
T Consensus         7 ~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~~~D   85 (112)
T 1fo0_B            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVANMSQ   85 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEESCCS
T ss_pred             CCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCCHhH
Confidence            34567888999999999997666788999983  22   111 0 000000      00111111112 79999999999


Q ss_pred             CEEEEEEEEcC
Q psy9150          70 AGIYECYADNM   80 (97)
Q Consensus        70 ~g~y~c~~~~~   80 (97)
                      +|.|.|.+.+.
T Consensus        86 sg~Y~C~~~~~   96 (112)
T 1fo0_B           86 GRTLYCTCSAD   96 (112)
T ss_dssp             CEEEEEEEESS
T ss_pred             CEEEEEEEEcC
Confidence            99999998864

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.97  E-value=3.1e-09  Score=59.45  Aligned_cols=75  Identities=16%  Similarity=0.312  Sum_probs=50.1

Q ss_pred             CeEEEEEEeccc-C-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          13 HKIVFICMAKGK-P-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        13 ~~~~l~c~~~~~-~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      +.+.|.|.+.+. | .+.+.|+++|..+...................+.|.+......|.|.|.|.+.|..+.....
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  101 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDS  101 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCccee
Confidence            589999999886 3 46899999999886543211111011111224467777777778999999999987765443

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.96  E-value=1e-08  Score=50.14  Aligned_cols=74  Identities=14%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE----ccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE----LYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      .+..+.+.+|+.+.|.|.+.+..  .+.+.|++.  +..    +....++....   .......+|.|.+++.+|+|.|.
T Consensus         6 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~   82 (121)
T 2i24_N            6 TPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETV---NRGSKSFSLRINDLTVKDSGTYR   82 (121)
T ss_dssp             ECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEE---ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEe---cCCCCEEEEEECCCChhhCEEEE
Confidence            35678899999999999997653  457999983  221    11112222211   11122568999999999999999


Q ss_pred             EEEEc
Q psy9150          75 CYADN   79 (97)
Q Consensus        75 c~~~~   79 (97)
                      |.+..
T Consensus        83 C~~~~   87 (121)
T 2i24_N           83 CKPES   87 (121)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99874

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.96  E-value=1.7e-08  Score=55.63  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeCC--EEcc-----------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKDG--VELY-----------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++++  ..+.                 ...++....   .......+|.|.
T Consensus        34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~  110 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTT---DTSSNTAYLQLS  110 (282)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEE---ETTTTEEEEEEC
T ss_pred             CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEE---ecCCCeEEEEEC
Confidence            467788999999999998764  5789999843  1110                 001111110   001123579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      +++.+|.|.|.|.+.|..|
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTG  129 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSS
T ss_pred             cCChhhCEEEEEEeccCCC
Confidence            9999999999999999865

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.96  E-value=5.9e-09  Score=56.56  Aligned_cols=73  Identities=10%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             eeeEEEcCCeEEEEEEeccc--CCCeeEEEeCC--EE--cc--------------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           5 FDYEYVLGHKIVFICMAKGK--PRPHITWFKDG--VE--LY--------------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ..  +.              ...++.+..   .......+|.|..
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~   92 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITR---DTSKNQVYLQLKS   92 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEE---EGGGTEEEEEECS
T ss_pred             CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEE---ecCCceEEEEECC
Confidence            35568899999999999874  47889999821  11  10              001111110   0111244799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|.|.|.|.+.+.
T Consensus        93 v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDS  108 (257)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             CChhhCEEEEEEEecC
Confidence            9999999999999986

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.96  E-value=9.7e-09  Score=49.74  Aligned_cols=74  Identities=14%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeC--CEE---cc-c---------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKD--GVE---LY-T---------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~--~~~---~~-~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+..+.+.+|+.+.|.|...+. +.+.+.|++.  +..   +. .         ..++....   .......+|.|.+++
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~~~   82 (116)
T 1fo0_A            6 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF---QKPKSSIGLIITATQ   82 (116)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEE---EGGGTEEEEEECSCC
T ss_pred             CCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEE---eCCCCEEEEEECCCC
Confidence            4567889999999999999776 5568999973  221   10 0         01111110   112224579999999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|+|.|.|.+.+
T Consensus        83 ~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           83 IEDSAVYFCAMRG   95 (116)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             hhhCEEEEEEEEc
Confidence            9999999999987

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.96  E-value=9.5e-09  Score=55.76  Aligned_cols=73  Identities=19%  Similarity=0.238  Sum_probs=49.0

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..+..                 ..++....   .......+|.|.
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~   86 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTV---DKSSSTAYLELR   86 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEE---EGGGTEEEEEEC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEE---ecCCCEEEEEEC
Confidence            346688999999999998765  678999972  211100                 01111110   011124469999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      .++.+|.|.|.|.+.+.
T Consensus        87 ~v~~~DsG~Y~C~~~~~  103 (256)
T 3umt_A           87 SLTSEDSAVYYCARDDR  103 (256)
T ss_dssp             SCCGGGCEEEEEEECCS
T ss_pred             CCCcccCEEEEEEEccC
Confidence            99999999999999887

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.95  E-value=4.7e-09  Score=56.94  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC-eeEEEeC--CEEccc------------cceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP-HITWFKD--GVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ..+.+.+|+.+.|.|.+.+.+.+ .+.|++.  +.....            ..++...     ......+|.|..++.+|
T Consensus       149 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D  223 (257)
T 3gkz_A          149 AIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGS-----GSGTSYSLTISSMEAED  223 (257)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             ceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEe-----cCCCEEEEEECCCChHH
Confidence            45678899999999999988877 8999983  322110            0111110     01113469999999999


Q ss_pred             CEEEEEEEEcCC
Q psy9150          70 AGIYECYADNMY   81 (97)
Q Consensus        70 ~g~y~c~~~~~~   81 (97)
                      .|.|.|.+.+..
T Consensus       224 ~G~Y~C~~~~~~  235 (257)
T 3gkz_A          224 AASYFCHQWSSF  235 (257)
T ss_dssp             CEEEEEEECSSS
T ss_pred             CEEEEEEEccCC
Confidence            999999998754

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.95  E-value=1.8e-09  Score=56.09  Aligned_cols=61  Identities=10%  Similarity=0.139  Sum_probs=44.9

Q ss_pred             cCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150          11 LGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF   88 (97)
Q Consensus        11 ~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~   88 (97)
                      .+..+.|.|.+ .+ |.|.+.|++++..+....              ..++.+..  ..|.|.|+|.+.|..+......
T Consensus       114 ~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~--------------~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          114 ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLR--------------QKTMSYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             EGGGTEEEEECSSC-TTCEEEEEETTEEEEEES--------------SSEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             cCCCEEEEEEeCCC-CCCEEEEEECCeECcCCC--------------CCEEEEEE--hhcCccEEEEEecCcCccccce
Confidence            34568899999 66 999999999998765110              12444433  6789999999999998876554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.95  E-value=2.3e-09  Score=55.22  Aligned_cols=60  Identities=8%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      ..|.|.+.+.|.|.+.|++++..+......              .+.+.  ...|.|.|+|.+.|..+.......+
T Consensus       108 ~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~--------------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          108 ATLTCEVLEGTDVELKLYQGKEHLRSLRQK--------------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             TEEEEECSSCSSCEEEEEETTEEEEEESSS--------------EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cEEEEEeCCCCCcEEEEEECCEECcCCcce--------------EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            368999998899999999999877532211              22222  2677899999999999987765543

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.50  E-value=7.3e-11  Score=56.79  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=51.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEcc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ....            ...++.+..   .......+|.|.+++.+
T Consensus         5 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~v~~~   81 (110)
T 1u3h_A            5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF---NKREKKLSLHIADSQPG   81 (110)
Confidence            456788999999999999987777889999853  2111            011111100   00112347999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |.|.|.|.+.+.
T Consensus        82 DsG~Y~C~~~~~   93 (110)
T 1u3h_A           82 DSATYFCAASAN   93 (110)
Confidence            999999998864

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.95  E-value=1.6e-09  Score=59.56  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=57.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCC-CeeEEE-eCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCE-EEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR-PHITWF-KDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~-p~i~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~c~~~~~~   81 (97)
                      ..+.+.+|+.+.|.|.+.+ |. +.+.|+ +++..+.........    .    ...|.|..+...|.| .|.|.+.|..
T Consensus        99 ~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~----~----~~~L~i~~v~~~d~G~~Y~C~a~n~~  169 (290)
T 2o26_X           99 LPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPN----P----KAGITIKNVKRAYHRLCVRCAAQRDG  169 (290)
T ss_dssp             CCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEE----T----TTEEEEESCCGGGTTCEEEEEEEETT
T ss_pred             cceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeC----C----CCCEEEecccHHHCCCEEEEEEEECC
Confidence            4566778999999999986 77 899995 578776544333221    1    136899999999999 9999999985


Q ss_pred             Ccee-EEEEEEE
Q psy9150          82 NVDT-RTFKTDF   92 (97)
Q Consensus        82 g~~~-~~~~~~~   92 (97)
                      +... ..+.+.+
T Consensus       170 ~~~~s~~~~l~V  181 (290)
T 2o26_X          170 TWLHSDKFTLKV  181 (290)
T ss_dssp             EEEECCCEEEEE
T ss_pred             ceEEeEEEEEEE
Confidence            5532 2444444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.95  E-value=4.9e-09  Score=60.55  Aligned_cols=74  Identities=14%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|.|  .+.+.|+++  +..+..                 ..++....   ........|.|..
T Consensus       227 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~  303 (438)
T 1qgc_4          227 GGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISR---DNAKNTLYLQMSS  303 (438)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEE---ETTTTEEEEEECS
T ss_pred             ceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEe---ecCCCeEEEEECC
Confidence            45678899999999999887  678999985  433210                 11221111   0111144799999


Q ss_pred             CCCCCCEEEEEEEEcCCC
Q psy9150          65 ATQMDAGIYECYADNMYN   82 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.+|.|.|.|.+.|..+
T Consensus       304 v~~~D~G~Y~C~a~n~~~  321 (438)
T 1qgc_4          304 LRSADTAMYYCVRREDGG  321 (438)
T ss_dssp             CCGGGCCEEEEEECCSSS
T ss_pred             CChhhCEEEEEEEEccCC
Confidence            999999999999998443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.95  E-value=2.7e-09  Score=56.80  Aligned_cols=75  Identities=13%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             EcCCeEEEEEEeccc-CC--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          10 VLGHKIVFICMAKGK-PR--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..|+.+.|.|.+.+. |.  +.+.|++++..+.... ..............+.|.|......|.|.|+|.+.|..+...
T Consensus       135 ~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          135 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN-FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE-CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEe-cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            367889999999887 65  6899999886542100 000000001111244688888888899999999999998765

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.95  E-value=5.4e-09  Score=50.39  Aligned_cols=74  Identities=15%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-----CCeeEEEeC--CEE---ccc---------cceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-----RPHITWFKD--GVE---LYT---------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-----~p~i~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      .+..+.+.+|+.+.|.|.+.+.+     .+.+.|++.  +..   +..         ..++...     ......+|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~   81 (113)
T 1dlf_L            7 TPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGS-----GSGTDFTLKIS   81 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEEC
T ss_pred             eCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEE-----ccCCEEEEEEC
Confidence            34568899999999999997765     477999973  221   110         1111111     01124479999


Q ss_pred             cCCCCCCEEEEEEEEcCC
Q psy9150          64 PATQMDAGIYECYADNMY   81 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~   81 (97)
                      +++.+|+|.|.|.+.+..
T Consensus        82 ~v~~~DsG~Y~C~~~~~~   99 (113)
T 1dlf_L           82 RVEAEDLGVYFCSQSTHV   99 (113)
T ss_dssp             SCCGGGCEEEEEEECSSS
T ss_pred             CCChHHCEEEEEEEecCC
Confidence            999999999999998753

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.95  E-value=2.2e-09  Score=55.92  Aligned_cols=62  Identities=16%  Similarity=0.252  Sum_probs=45.7

Q ss_pred             CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          13 HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      ..+.|.|.+.+.|.|.+.|++++..+ ...              ...+.+.. ...|.|.|+|.+.|..+.......+
T Consensus       116 ~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~--------------~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          116 INTTLTCEVMNGTDPELNLYQDGKHL-KLS--------------QRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             TTTEEEEECSSCSSCEEEEEESSCEE-EEE--------------SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CcEEEEeEccCCCCCEEEEEECCEEC-CCC--------------CcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            35789999998889999999999877 111              01222222 4678999999999999988766544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.94  E-value=2.7e-09  Score=57.05  Aligned_cols=77  Identities=16%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             EEcCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           9 YVLGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +..|+.+.|.|.+.+. |.| .+.|++++..+......... . .......+.|.|.....++ |.|+|.+.|..+....
T Consensus       142 ~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~-~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~  218 (228)
T 3bae_H          142 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-Q-SDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV  218 (228)
T ss_dssp             --CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEE-E-TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             ccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCcee-C-CCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence            3578999999999886 777 89999987653211111110 0 0111124568888887766 9999999999887654


Q ss_pred             EE
Q psy9150          87 TF   88 (97)
Q Consensus        87 ~~   88 (97)
                      ..
T Consensus       219 ~~  220 (228)
T 3bae_H          219 DK  220 (228)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.94  E-value=7.3e-09  Score=51.17  Aligned_cols=89  Identities=16%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             ceeeEEEcCCeEEEEEEec-------ccCCCeeEEEeCCEE------cccc-----------ceeeEEEEEecCceEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAK-------GKPRPHITWFKDGVE------LYTH-----------MYVNLHEWHYGTDRIKSK   59 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~-------~~~~p~i~w~~~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~   59 (97)
                      +..+.+.+|+.+.|.|...       ....+.+.|++....      +...           .++.+.   ........+
T Consensus        13 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~---~~~~~~~~s   89 (132)
T 1nko_A           13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLL---GDPQTKNCT   89 (132)
T ss_dssp             CSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEEC---SCGGGTBCC
T ss_pred             CCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEe---CCCCCCceE
Confidence            3567899999999999986       334578999985431      1110           111110   000112347


Q ss_pred             EEEccCCCCCCEEEEEEEEcCCCc--e-eEEEEEEEEEe
Q psy9150          60 IEIDPATQMDAGIYECYADNMYNV--D-TRTFKTDFSIT   95 (97)
Q Consensus        60 l~i~~~~~~~~g~y~c~~~~~~g~--~-~~~~~~~~~~~   95 (97)
                      |.|.+++.+|+|.|.|.+.+....  . ...+.|.|..+
T Consensus        90 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~  128 (132)
T 1nko_A           90 LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTAL  128 (132)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEECC
T ss_pred             EEEcccCcccCeeEEEEEEcCCCcccccCCceEEEeccc
Confidence            999999999999999998875411  1 23455555543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.94  E-value=1.4e-08  Score=55.70  Aligned_cols=72  Identities=15%  Similarity=0.234  Sum_probs=49.3

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeCC--EEcc-----------------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKDG--VELY-----------------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.+.+|+.+.|.|.+.+.+  .+.+.|++++  ....                 ...++....   ........|.|..
T Consensus       143 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~  219 (276)
T 3auv_A          143 GGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISA---DTSKNTAYLQMNS  219 (276)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEE---EGGGTEEEEEECS
T ss_pred             ceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEe---cCCCcEEEEEECC
Confidence            45677899999999998876  5889999852  2110                 011222110   0011234799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|.|.|.|.+.|.
T Consensus       220 v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          220 LRAEDTAVYYCARFVF  235 (276)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             CChhHCEEEEEEEEcC
Confidence            9999999999999997

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.94  E-value=2.9e-09  Score=59.55  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE--EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL--HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      |+.+.|.|.+.|.+++  .+.|+++|..+........  ...........+.|.|..+...|.|.|.|.+.|....
T Consensus       234 g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            8899999999885443  7999999998764321110  0000001123557899988888999999999998876

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.94  E-value=2.5e-08  Score=54.47  Aligned_cols=72  Identities=15%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc----cc------------eeeEEEEEecCceEEEEEEEccC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT----HM------------YVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~----~~------------~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      +..+.+.+|+.+.|.|.+.+ +.+.+.|++  .+.....    ..            ++...    .......+|.|.++
T Consensus        34 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v  108 (270)
T 3qib_D           34 PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAE----CPSNSPCSLEIQSS  108 (270)
T ss_dssp             CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEE----CCTTSCEEEEESSC
T ss_pred             CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEE----eCCCcEEEEEECCC
Confidence            45678999999999999865 778899998  2211100    00            11110    11122458999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy9150          66 TQMDAGIYECYADNM   80 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~   80 (97)
                      +.+|.|.|.|.+.+.
T Consensus       109 ~~~D~G~Y~C~~~~~  123 (270)
T 3qib_D          109 EAGDSALYLCASSLN  123 (270)
T ss_dssp             CGGGCEEEEEEEESC
T ss_pred             CHhHCeEEEEEEecC
Confidence            999999999999864

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.94  E-value=1.1e-08  Score=49.18  Aligned_cols=73  Identities=11%  Similarity=0.224  Sum_probs=49.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---ccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +..         ..++..   .........+|.|.+++.+
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~---~~~~~~~~~~L~I~~~~~~   82 (112)
T 2z35_A            6 TGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEA---TYNKEATSFHLQKASVQES   82 (112)
T ss_dssp             SCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEE---ECBTTTTBCCEEESSCCST
T ss_pred             CCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEE---EEcCCCCEEEEEECCCChh
Confidence            456788999999999999977677889999832  11   110         001111   0011112346999999999


Q ss_pred             CCEEEEEEEE
Q psy9150          69 DAGIYECYAD   78 (97)
Q Consensus        69 ~~g~y~c~~~   78 (97)
                      |+|.|.|.+.
T Consensus        83 DsG~Y~C~~~   92 (112)
T 2z35_A           83 DSAVYYCALS   92 (112)
T ss_dssp             TCSEEEEEEE
T ss_pred             hCEEEEEEEE
Confidence            9999999987

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.93  E-value=6e-09  Score=60.17  Aligned_cols=74  Identities=14%  Similarity=0.269  Sum_probs=51.9

Q ss_pred             cCCeEEEEEEecc-cCCC-eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .|..+.|.|.+.+ .|.| .+.|+++|..+................  .....|.|..+..+|.|.|.|.+.|..+..
T Consensus       130 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          130 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             cCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence            3778999999977 5667 899999998876541111100000111  124579999999999999999999988774

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.93  E-value=1.1e-08  Score=54.36  Aligned_cols=76  Identities=14%  Similarity=0.305  Sum_probs=49.7

Q ss_pred             EcCCeEEEEEEecc-cCC-C-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          10 VLGHKIVFICMAKG-KPR-P-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        10 ~~g~~~~l~c~~~~-~~~-p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..|+.+.|.|.+.+ .|. + .+.|++++..+...................+.|.|......|.|.|+|.+.+..+...
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            36889999999988 565 3 7999998866532110000000001111245688998888899999999999886543

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.92  E-value=1e-07  Score=46.60  Aligned_cols=89  Identities=11%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEeCC--E---E-ccc--------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFKDG--V---E-LYT--------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~~--~---~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ++..+.+.+|+.+.|.|.....  ....+.|++..  .   . +..        ..++.+..   .......+|.|..++
T Consensus        16 ~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~l~   92 (122)
T 1hkf_A           16 KAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD---DPDAGFFTVTMTDLR   92 (122)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             CCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEE---cCcCCEEEEEEeCCC
Confidence            4567889999999999998653  23579999842  1   1 110        01111110   112224579999999


Q ss_pred             CCCCEEEEEEEEcCCC-ceeEEEEEEEEE
Q psy9150          67 QMDAGIYECYADNMYN-VDTRTFKTDFSI   94 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g-~~~~~~~~~~~~   94 (97)
                      .+|+|.|.|.+..... .......|.+.+
T Consensus        93 ~~Dsg~Y~C~v~~~~~~~~~~~~~l~L~V  121 (122)
T 1hkf_A           93 EEDSGHYWCRIYRPSDNSVSKSVRFYLVV  121 (122)
T ss_dssp             GGGCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             HHHCEEEEEEEEcCCCCcccccEEEEEEe
Confidence            9999999999887643 344455555443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.92  E-value=1.1e-09  Score=60.05  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCC--CeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR--PHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~--p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+........     ..   ...|.|..+...|.|.|.|.+.|..
T Consensus        97 ~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~-----~~---~~~L~i~~~~~~d~G~Y~C~a~n~~  167 (292)
T 4dkd_C           97 QEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSF-----SP---WHGFTIHRAKFIQSQDYQCSALMGG  167 (292)
T ss_dssp             SEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEEC-----CS---SSCCEETTCCGGGCSEEEEEECSTT
T ss_pred             CeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccc-----cC---CceEEECCCCHHHCeEEEEEEEeCC
Confidence            3567889999999999987 44  78999986 444433322211     11   1248999999999999999999887


Q ss_pred             Ccee-EEEEEEEE
Q psy9150          82 NVDT-RTFKTDFS   93 (97)
Q Consensus        82 g~~~-~~~~~~~~   93 (97)
                      +... ..+.|.+.
T Consensus       168 ~~~~s~~~~l~V~  180 (292)
T 4dkd_C          168 RKVMSISIRLKVQ  180 (292)
T ss_dssp             SCEECCCEEEEEE
T ss_pred             CceeEEEEEEEEe
Confidence            7543 35555543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.92  E-value=1.4e-09  Score=57.91  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             cCCeEEEEEEecc-cCCC-eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .|+.+.|.|.+.| .|.+ .+.|+++|..+..........  ....  ...+.|.+......|.|.|+|.+.|.....
T Consensus       131 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~--~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          131 SRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVL--DSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE--CTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             cCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEE--CCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            4789999999998 5655 899999998764321111100  1111  223445565544456899999999987653

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.92  E-value=2e-09  Score=56.78  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             EcCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          10 VLGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..|+.+.|.|.+.|.++    +.+.|++++..+.........  .....  .....+.+......|.|.|.|.+.|..+.
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~--~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~   93 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE--EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCE--ECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCce--eccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCC
Confidence            57999999999988753    389999999776532110000  01111  11223333333333489999999998776


Q ss_pred             e
Q psy9150          84 D   84 (97)
Q Consensus        84 ~   84 (97)
                      .
T Consensus        94 ~   94 (207)
T 1l6x_A           94 A   94 (207)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.92  E-value=1.2e-09  Score=59.23  Aligned_cols=74  Identities=12%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             cCCeEEEEEEecccC-CC-eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGKP-RP-HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~-~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .|+.+.|.|.+.+.+ .+ .+.|+++|..+................  ...+.|.|..+..+|.|.|.|.+.|.....
T Consensus       164 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          164 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            477899999998854 43 699999998875431000000000111  124578899888889999999999987654

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.92  E-value=9.9e-10  Score=52.87  Aligned_cols=73  Identities=15%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             CceeeEEEcCCeEEEEEEec-ccCCCeeEEEeC--CE---Ecc---c------------cceeeEEEEEecCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAK-GKPRPHITWFKD--GV---ELY---T------------HMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~--~~---~~~---~------------~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      .+..+.+.+|+.+.|.|.+. +.+.+.+.|++.  +.   .+.   .            ..++...     ......+|.
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~-----~~~~~~~L~   79 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMT-----VNDQKFDLN   79 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEE-----ESSSBEEEE
T ss_pred             CCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEE-----EcCCeEEEE
Confidence            45678899999999999997 766778999983  22   111   0            1111111     111245799


Q ss_pred             EccCCCCCCEEEEEEEEcC
Q psy9150          62 IDPATQMDAGIYECYADNM   80 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~   80 (97)
                      |.+++.+|+|.|.|.+.+.
T Consensus        80 I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           80 IIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             ECCCChhHCEEEEEEEccC
Confidence            9999999999999998875

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.92  E-value=7e-08  Score=46.62  Aligned_cols=75  Identities=16%  Similarity=0.303  Sum_probs=50.1

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCC--EE---ccc------------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDG--VE---LYT------------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+..+.+.+|+.+.|.|.+... +.+.+.|++..  ..   +..            ..++....   .......+|.|.+
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~   82 (116)
T 1tvd_A            6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKH---ILTQKAFHLVISP   82 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEE---EGGGTEEEEEESS
T ss_pred             CCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEE---ecCCCEEEEEEcc
Confidence            4567889999999999998654 45679999732  11   110            11121110   0112245799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|+|.|.|.+.+.
T Consensus        83 ~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           83 VRTEDSATYYCAFTLP   98 (116)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             CChHHCEEEEEEEeCC
Confidence            9999999999999874

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.91  E-value=1.3e-08  Score=54.45  Aligned_cols=75  Identities=16%  Similarity=0.248  Sum_probs=51.2

Q ss_pred             eeeEEEcCCeEEEEEEecccCC----CeeEEEeC--CEEcc---c-------------cceeeEEEEEecCceEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR----PHITWFKD--GVELY---T-------------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~----p~i~w~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      ..+.+.+|+.+.|.|.+.+.+.    +.+.|++.  +..+.   .             ..++.+...   ......+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I   84 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKD---TSRDMVFMKI   84 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEE---TTTTEEEEEE
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEc---CCCCeEEEEE
Confidence            4567889999999999988764    88999973  22110   0             112221110   0112358999


Q ss_pred             ccCCCCCCEEEEEEEEcCCC
Q psy9150          63 DPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+++.+|.|.|.|.+.+..|
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYG  104 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEEST
T ss_pred             cCCCcccCEEEEEEEecCCC
Confidence            99999999999999988654

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.91  E-value=8.9e-08  Score=46.42  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-CCeeEEEeC--CE--E-cc-c---------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-RPHITWFKD--GV--E-LY-T---------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~--~~--~-~~-~---------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+..+.+.+|+.+.|.|...... ...+.|++.  +.  . +. .         ..++...   .........|.|..++
T Consensus         5 ~p~~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~---~~~~~~~~~L~I~~~~   81 (117)
T 3bp6_A            5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII---QLPNRHDFHMNILDTR   81 (117)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEE---ECTTSSEEEEEESSCC
T ss_pred             cCCcEEEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEE---EcCCCCEEEEEECcCC
Confidence            35567899999999999997643 467999983  22  1 10 0         0111111   0112234579999999


Q ss_pred             CCCCEEEEEEEEcCCC
Q psy9150          67 QMDAGIYECYADNMYN   82 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g   82 (97)
                      .+|+|.|.|.+.+...
T Consensus        82 ~~Dsg~Y~C~~~~~~~   97 (117)
T 3bp6_A           82 RNDSGIYLCGAISLHP   97 (117)
T ss_dssp             GGGCEEEEEEEEECSS
T ss_pred             HHHCEEEEEEEEecCC
Confidence            9999999999887543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.91  E-value=4.6e-09  Score=58.17  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC------eeEEEeC--CEEcc---c---------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP------HITWFKD--GVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p------~i~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+.+|+.+.|.|.+.+.+.+      .+.|+++  +....   .         ..++...     ......+|.|..
T Consensus       167 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~  241 (291)
T 2gki_A          167 SSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS-----GSGTDFTLTISS  241 (291)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESS
T ss_pred             CEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEE-----ecCCEEEEEECC
Confidence            35678899999999999887765      8999985  22111   0         1111111     011135799999


Q ss_pred             CCCCCCEEEEEEEEcCC
Q psy9150          65 ATQMDAGIYECYADNMY   81 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~   81 (97)
                      ++.+|.|.|.|.+.+..
T Consensus       242 v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          242 VQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CCGGGCEEEEEEEEETT
T ss_pred             CCHHHCEEEEEEEccCC
Confidence            99999999999998854

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.90  E-value=1.6e-08  Score=54.80  Aligned_cols=79  Identities=11%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc---c-cc-eeeEE------EEEecCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY---T-HM-YVNLH------EWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~---~-~~-~~~~~------~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ++..+.+.+|+.+.|.|.+.+.+.+.+.|++  .+....   . .. .....      .+......... |.|.+++.+|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~D   85 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQ   85 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSS
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhh
Confidence            3457889999999999999888889999997  221110   0 00 00000      00001111111 8999999999


Q ss_pred             CEEEEEEEEcCCC
Q psy9150          70 AGIYECYADNMYN   82 (97)
Q Consensus        70 ~g~y~c~~~~~~g   82 (97)
                      .|.|.|.+.+..+
T Consensus        86 sG~Y~C~~~~~~~   98 (253)
T 3to4_D           86 GRTLYCTSSADHW   98 (253)
T ss_dssp             CEEEEEEEECSCC
T ss_pred             CeEEEEEEecCCC
Confidence            9999999986543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.90  E-value=3e-08  Score=52.77  Aligned_cols=75  Identities=13%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---cc--------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LY--------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~--------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..   +.              ...++.+..   .......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~   84 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR---DNAKNSLYLQMS   84 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE---CSSSCEEEEEEC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEe---eCCCCEEEEEEC
Confidence            457889999999999998765  578999983  211   10              011222210   011224589999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|.|.|.|.+.+..+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           85 KVRSEDTALYYCARLHYYG  103 (220)
T ss_dssp             SCCGGGCEEEEEEEEETTT
T ss_pred             CCChhhCEEEEEEEecccc
Confidence            9999999999999988654

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.90  E-value=3.1e-08  Score=48.29  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=47.9

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---cc-c-------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LY-T-------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~-~-------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|...+.+  ...+.|++.  +..   +. .             ..++....   ........|.|.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~   84 (121)
T 1j05_H            8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLT   84 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEE---EGGGTEEEEEEC
T ss_pred             CCEEEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEE---cCCCCEEEEEEC
Confidence            356788999999999986533  467999973  221   10 0             01111110   011224579999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      +++.+|+|.|.|.+.+.
T Consensus        85 ~~~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           85 SLTSEDTAVYYCAPFGY  101 (121)
T ss_dssp             SCCGGGCEEEEEEEEBT
T ss_pred             CCCHHHCEEEEEEEEcC
Confidence            99999999999998875

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.90  E-value=8.9e-09  Score=53.46  Aligned_cols=88  Identities=10%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             ceeeEEEcCCeEEEEEEecc-cCCCeeEEEeC-CEEcccc-ceeeEEEEEecC--c-----eEEEEEEEccCCCCCCEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKG-KPRPHITWFKD-GVELYTH-MYVNLHEWHYGT--D-----RIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~-~~~~~~~-~~~~~~~~~~~~--~-----~~~~~l~i~~~~~~~~g~y   73 (97)
                      ...+.+.+|+.+.|.|...+ .+.+.+.|++. +..+..- ....... ....  .     ....+|.|.+++..|.|.|
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~-~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTV-FESVFKDRVDLDKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEE-CSSTTTTTEEECTTTCCEEECSCCGGGCEEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeE-cchhcCCeEEEeCCCccEEEcCCCHHHCeEE
Confidence            45778999999999999854 34678999984 3322110 0000000 0000  0     1134699999999999999


Q ss_pred             EEEEEcCCCceeEEEEEEEE
Q psy9150          74 ECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        74 ~c~~~~~~g~~~~~~~~~~~   93 (97)
                      .|.+.+.. .....+.|.|.
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~  103 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVY  103 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEE
T ss_pred             EEEEEcCC-eEEEEEEEEEE
Confidence            99988766 45555555553

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.90  E-value=1.2e-08  Score=49.73  Aligned_cols=71  Identities=15%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             eeEEEcCCeEEEEEEecccC---CCeeEEEeC--CEE---ccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKP---RPHITWFKD--GVE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+.+.+|+.+.|.|...+.+   .+.+.|++.  +..   +..         ..++...     ......+|.|.+++.+
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~~~~~   83 (120)
T 1oaq_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGS-----LIGNKAALTITGAQTE   83 (120)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEE-----EETTEEEEEEESCCGG
T ss_pred             cEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEe-----cCCCeEEEEECCCChh
Confidence            38899999999999997765   567999983  221   110         1122211     0111457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        84 DsG~Y~C~~~~~~   96 (120)
T 1oaq_L           84 DEAIYFCALWYSN   96 (120)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             hCeEEEEEEccCC
Confidence            9999999988754

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.89  E-value=2.7e-09  Score=56.30  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             CCeEEEEEEecccCC--CeeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPR--PHITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.|.|.+.|.++  +.+.|+++|..+..........  ....  ...+.|.+......|.|.|+|.+.|....
T Consensus       124 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~--~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          124 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVL--DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE--CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceE--CCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            567999999988643  3899999998775321111110  0111  22344566655556789999999998754

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.89  E-value=6.6e-10  Score=59.39  Aligned_cols=72  Identities=13%  Similarity=0.179  Sum_probs=43.2

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEe-cCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHY-GTD--RIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .|+.+.|.|.+.+.+++  .+.|+++|..+........ .... ...  ...+.|.|.....+|.|.|.|.+.|....
T Consensus       148 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          148 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW-TDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEE-CCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             cCCceEEEEEEccccCCceEEEEEECCeeCCCCceEec-CCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            48899999999886544  6999999987654310000 0000 111  12457888888888999999999987654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.89  E-value=2.4e-08  Score=54.26  Aligned_cols=74  Identities=14%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEccc---------------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELYT---------------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      ..+.+.+|+.+.|.|.+.+. .+.+.|++..  .....               ..++...    .......+|.|..++.
T Consensus       145 ~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~  219 (256)
T 3tf7_C          145 RNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT----RTTQEDFFLTLESASP  219 (256)
T ss_dssp             SEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE----CCSSSBCEEEESSCCG
T ss_pred             CEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE----eCCCCeEEEEECCCCH
Confidence            45567799999999999876 7889999832  11100               0001000    0011234799999999


Q ss_pred             CCCEEEEEEEEcCCCc
Q psy9150          68 MDAGIYECYADNMYNV   83 (97)
Q Consensus        68 ~~~g~y~c~~~~~~g~   83 (97)
                      +|.|.|.|.+.|..|.
T Consensus       220 ~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          220 SQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             GGCEEEEEEEEEETTE
T ss_pred             HHCEEEEEEecCCCCc
Confidence            9999999999987664

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.88  E-value=3.1e-08  Score=54.22  Aligned_cols=74  Identities=20%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+..                 ..++.+...   ......+|.|.
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~   90 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVD---KSSSTVYIQLS   90 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEec---CCCCEEEEEEc
Confidence            467889999999999998766  678999984  221100                 011211100   01124579999


Q ss_pred             cCCCCCCEEEEEEEEcCC
Q psy9150          64 PATQMDAGIYECYADNMY   81 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~   81 (97)
                      .++.+|.|.|.|.+.+..
T Consensus        91 ~v~~~DsG~Y~C~~~~~~  108 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYV  108 (261)
T ss_dssp             SCCGGGCEEEEEEEECTT
T ss_pred             CCCcccCeEEEEEEecCC
Confidence            999999999999999864

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.88  E-value=2.8e-08  Score=52.76  Aligned_cols=74  Identities=14%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             eeeEEEcCCeEEEEEEeccc--CCCeeEEEeC--CEEcc-------------------ccceeeEEEEEecCceEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGK--PRPHITWFKD--GVELY-------------------THMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      ..+.+.+|+.+.|.|.+.+.  +.+.+.|++.  +....                   ...++.+..   .......+|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~   84 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISR---DDSKNTAFLQ   84 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEE---EGGGTEEEEE
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEe---cCCCCEEEEE
Confidence            35678899999999999764  3678999972  21110                   001222111   0111244799


Q ss_pred             EccCCCCCCEEEEEEEEcCC
Q psy9150          62 IDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~~   81 (97)
                      |..++.+|.|.|.|.+.+..
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~  104 (221)
T 3m8o_H           85 MNSLKSDDTAMYYCVIRGDV  104 (221)
T ss_dssp             ECSCCGGGCEEEEEEEESCT
T ss_pred             ECCCCHHHCEEEEEEEECCC
Confidence            99999999999999998863

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.88  E-value=5.5e-09  Score=56.26  Aligned_cols=72  Identities=13%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEE------ecCceEEEEEEEccCCCCC-CEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWH------YGTDRIKSKIEIDPATQMD-AGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~~~g   82 (97)
                      |+.+.|.|.+.+.+++  .+.|+++|..+............      .......+.|.+......| .|.|+|.+.|...
T Consensus       140 g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          140 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCC
Confidence            7899999999887765  79999999888653221100000      0011123457888877777 8999999998765


Q ss_pred             c
Q psy9150          83 V   83 (97)
Q Consensus        83 ~   83 (97)
                      .
T Consensus       220 ~  220 (246)
T 4dzb_B          220 S  220 (246)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.88  E-value=1.8e-08  Score=54.07  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=47.6

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc-----------------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY-----------------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.+.|  .+.+.|+++  +....                 ...++....   .......+|.|..
T Consensus       128 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~  204 (240)
T 1moe_A          128 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLTS  204 (240)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECS
T ss_pred             ceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEE---cccCCEEEEEECc
Confidence            45677899999999998876  358999984  22211                 001111110   0111235799999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|.|.|.|.+.+
T Consensus       205 v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          205 LTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCHHHCEEEEEEEEe
Confidence            999999999999984

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.87  E-value=6.3e-09  Score=56.92  Aligned_cols=66  Identities=14%  Similarity=0.318  Sum_probs=45.9

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      .+.+|+.+.|.|.+.+. .+.+.|+++|..+........    .........|.|..++  |.|.|.|.+.+.
T Consensus       117 ~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~----~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~  182 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP----KVNGTFQADFPLGPAT--HGGTYRCFGSFR  182 (257)
T ss_dssp             TCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC----CSSSCCBEEEEEEECC--SCEEEEEEEECS
T ss_pred             ccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc----ccCCceeEEEEecccc--cCEEEEEEEEcC
Confidence            35689999999999775 478999999876543211000    0111124578888888  999999999865

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.87  E-value=6.1e-09  Score=56.92  Aligned_cols=74  Identities=15%  Similarity=0.278  Sum_probs=51.1

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-----CCeeEEEeC--CEE---cc---------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-----RPHITWFKD--GVE---LY---------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-----~p~i~w~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +..+.+.+|+.+.|.|.+.+.+     .+.+.|++.  +..   +.         ...++...     ......+|.|..
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~   96 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGS-----GSGTDFTLKINR   96 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESS
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEE-----cCCCEEEEEECC
Confidence            3456788999999999998876     478999984  221   10         01122211     011134799999


Q ss_pred             CCCCCCEEEEEEEEcCCC
Q psy9150          65 ATQMDAGIYECYADNMYN   82 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.+|.|.|.|.+.+..+
T Consensus        97 v~~~DsG~Y~C~~~~~~~  114 (268)
T 1x9q_A           97 VEAEDLGVYFCSQSTHVP  114 (268)
T ss_dssp             CCGGGCEEEEEEECSSSS
T ss_pred             CChhHCEEEEEEEecCCC
Confidence            999999999999988754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.87  E-value=3.8e-09  Score=56.54  Aligned_cols=75  Identities=16%  Similarity=0.304  Sum_probs=46.3

Q ss_pred             EEcCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           9 YVLGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +..|+.+.|.|.+.+. |.| .+.|++++..+..........  .......+.|.|.....++ |.|+|.+.|..+....
T Consensus       133 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~--~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  209 (227)
T 1mju_H          133 DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQ--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKV  209 (227)
T ss_dssp             -----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEE--TTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             ccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceec--CCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcce
Confidence            3468899999999886 666 899999886542110000000  0111124578898888877 9999999997765443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.87  E-value=3.7e-08  Score=52.52  Aligned_cols=74  Identities=14%  Similarity=0.269  Sum_probs=50.1

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---cc--------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LY--------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~--------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..   +.              ...++.+..   .......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~   84 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISR---DNSKNTLYLQMN   84 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEE---ETTTTEEEEEEC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEe---cCCCCEEEEEEC
Confidence            467889999999999998765  478999983  211   10              001121110   001114579999


Q ss_pred             cCCCCCCEEEEEEEEcCC
Q psy9150          64 PATQMDAGIYECYADNMY   81 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~   81 (97)
                      .++.+|.|.|.|.+.+..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~  102 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFY  102 (223)
T ss_dssp             SCCGGGCEEEEEEEESSS
T ss_pred             CCCHHHCEEEEEEEeccc
Confidence            999999999999998865

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.86  E-value=5.8e-09  Score=55.70  Aligned_cols=73  Identities=11%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCC-C-eeEEEeC--CEEc---c---------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR-P-HITWFKD--GVEL---Y---------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~-p-~i~w~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ..+.+.+|+.+.|.|.+.+.+. + .+.|+++  +...   .         ...++....     .....+|.|.+++.+
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~  101 (234)
T 2j6e_L           27 PSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-----SGTSASLAISGLRSE  101 (234)
T ss_dssp             SCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-----ETTEEEEEEESCCST
T ss_pred             CcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-----cCCeEEEEECCCCHH
Confidence            4566889999999999987543 4 6999985  2211   0         011111110     111347999999999


Q ss_pred             CCEEEEEEEEcCCC
Q psy9150          69 DAGIYECYADNMYN   82 (97)
Q Consensus        69 ~~g~y~c~~~~~~g   82 (97)
                      |.|.|.|.+.+..+
T Consensus       102 D~G~Y~C~~~~~~~  115 (234)
T 2j6e_L          102 DEADYYCATWDDSL  115 (234)
T ss_dssp             TCSEEEEEEEETTT
T ss_pred             HCEEEEEEEEcCCc
Confidence            99999999998876

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.86  E-value=1.4e-08  Score=56.99  Aligned_cols=77  Identities=13%  Similarity=0.211  Sum_probs=52.8

Q ss_pred             eeeEEEcCCeEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..+.+..|..+.|.|.+.+.+ .+.+.|++++..+..... ...       .....|.|..+...|.|.|.|..   .|.
T Consensus        14 ~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~-------~~~~~L~i~~v~~~d~G~Y~C~~---~g~   82 (325)
T 1n26_A           14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-RWA-------GMGRRLLLRSVQLHDSGNYSCYR---AGR   82 (325)
T ss_dssp             TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCE-EEE-------EESSEEEECSCCGGGCEEEEEES---SSS
T ss_pred             CcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcccc-ccc-------cccceEEecccchhhCeEeEEEe---CCE
Confidence            344457899999999987654 788999997765422111 110       01347999999999999999982   565


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ......|.+
T Consensus        83 ~~~~~~L~V   91 (325)
T 1n26_A           83 PAGTVHLLV   91 (325)
T ss_dssp             CSCEEEEEE
T ss_pred             EeeeEEEEe
Confidence            555555544

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.86  E-value=3.8e-08  Score=53.09  Aligned_cols=75  Identities=13%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEeC--CEEc---c--------------ccceeeEEEEEecCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFKD--GVEL---Y--------------THMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~~~---~--------------~~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      .+..+.+.+|+.+.|.|.+.+.  +.+.+.|++.  +...   .              ...++.+..   .......+|.
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~   83 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDR---IPETSTSTLT   83 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEE---ETTTTEEEEE
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEe---cCCCcEEEEE
Confidence            4567889999999999999775  5678999983  2211   0              011222111   0111245799


Q ss_pred             EccCCCCCCEEEEEEEEcC
Q psy9150          62 IDPATQMDAGIYECYADNM   80 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~   80 (97)
                      |.+++.+|.|.|.|.+.+.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEA  102 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEE
T ss_pred             ECCCCcccCEEEEEeeecC
Confidence            9999999999999999875

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.86  E-value=2.7e-08  Score=52.77  Aligned_cols=74  Identities=15%  Similarity=0.331  Sum_probs=50.1

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc----------------ccceeeEEEEEecCceEEEEEEEcc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY----------------THMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +....                ...++.+..   .......+|.|..
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~   84 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINR---DTSKSQVFLKMNS   84 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEE---ETTTTEEEEEESS
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEe---eCCCceEEEEECC
Confidence            456788999999999998764  578999984  22110                011222111   0111245899999


Q ss_pred             CCCCCCEEEEEEEEcCC
Q psy9150          65 ATQMDAGIYECYADNMY   81 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~   81 (97)
                      ++.+|.|.|.|.+.+..
T Consensus        85 v~~~D~G~Y~C~~~~~~  101 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGW  101 (215)
T ss_dssp             CCGGGCEEEEEEECCSS
T ss_pred             CCcccCEEEEEEEecCC
Confidence            99999999999998864

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.86  E-value=1.2e-07  Score=46.31  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeCC--EE---cc---c-----------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKDG--VE---LY---T-----------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~--~~---~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|...+..  ...+.|++..  ..   +.   .           ..++....   ........|.|.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~   84 (123)
T 2wzp_D            8 GGGLVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSR---DSGKNTVYLQMN   84 (123)
T ss_dssp             ECEEEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEE---ETTEEEEEEEEC
T ss_pred             CCEEEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEE---eCCCCEEEEEEC
Confidence            457889999999999997532  4679999842  11   10   0           01121110   112234589999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      +++.+|+|.|.|.+.+.
T Consensus        85 ~~~~~Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           85 SLKPEDTAIYYCAARSG  101 (123)
T ss_dssp             SCCGGGCEEEEEEEEES
T ss_pred             CCCHHHCEEEEEEEecC
Confidence            99999999999998875

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.85  E-value=1.1e-07  Score=51.16  Aligned_cols=74  Identities=15%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEcc---c------------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELY---T------------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~---~------------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      .+..+.+.+|+.+.|.|.+. .+.+.+.|++..  ....   .            ..++.+.    .......+|.|..+
T Consensus         5 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~----~~~~~~~~L~I~~v   79 (238)
T 1bec_A            5 SPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS----RPSQEQFSLILELA   79 (238)
T ss_dssp             ECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEE----CCSSSEEEEEESSC
T ss_pred             CCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEE----ecCCCEEEEEEecC
Confidence            45678899999999999985 467889999842  1110   0            0111110    00122458999999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|.|.|.|.+.+..
T Consensus        80 ~~~D~G~Y~C~~~~~~   95 (238)
T 1bec_A           80 TPSQTSVYFCASGGGR   95 (238)
T ss_dssp             CGGGCEEEEEEEESCT
T ss_pred             CcccCEEEEEEEecCC
Confidence            9999999999999874

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.85  E-value=3.2e-09  Score=57.01  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             EEcCCeEEEEEEeccc-CC-C-eeEEEeCCEEc-cccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGK-PR-P-HITWFKDGVEL-YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~-~~-p-~i~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +..|+.+.|.|.+.+. |. | .+.|+++|..+ ........ ............|.|..+..+|.|.|.|.+.+..+..
T Consensus        25 v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~-~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  103 (231)
T 2w59_A           25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQ-EHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL  103 (231)
T ss_dssp             HHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEE-ECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             cccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccce-ECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC
Confidence            3578999999999885 53 5 89999988766 22111100 0000011124578999988899999999999987653

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.85  E-value=1.8e-07  Score=46.49  Aligned_cols=75  Identities=16%  Similarity=0.172  Sum_probs=49.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-CCeeEEEeC--CEEcc---c----------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-RPHITWFKD--GVELY---T----------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~--~~~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +..+.+.+|+.+.|.|...... ...+.|++.  +....   .          ..++...   .........|.|..++.
T Consensus        16 p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~---~~~~~~~~~L~I~~~~~   92 (134)
T 3bik_B           16 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII---QLPNRHDFHMNILDTRR   92 (134)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEE---ECTTSSEEEEEECSCCG
T ss_pred             CCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEE---ecCCCCEEEEEECCCCh
Confidence            4567899999999999997643 467999983  32110   0          0111111   01122245799999999


Q ss_pred             CCCEEEEEEEEcCC
Q psy9150          68 MDAGIYECYADNMY   81 (97)
Q Consensus        68 ~~~g~y~c~~~~~~   81 (97)
                      +|+|.|.|.+.+..
T Consensus        93 ~Dsg~Y~C~~~~~~  106 (134)
T 3bik_B           93 NDSGIYLCGAISLH  106 (134)
T ss_dssp             GGCEEEEEEEEECS
T ss_pred             HHCEEEEEEEEeCC
Confidence            99999999988654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.85  E-value=6.5e-08  Score=51.86  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEeC--CEE---cc-------------ccceeeEEEEEecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFKD--GVE---LY-------------THMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      .+..+.+.+|+.+.|.|.+.+.  +.+.+.|++.  +..   +.             ...++.+..   .......+|.|
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I   83 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASK---NPSASTSILTI   83 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEE---CCTTTEEEEEE
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEE---cCCCCEEEEEE
Confidence            4567889999999999999764  5678999973  211   10             011111110   11112457999


Q ss_pred             ccCCCCCCEEEEEEEEcC
Q psy9150          63 DPATQMDAGIYECYADNM   80 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~   80 (97)
                      ..++.+|.|.|.|.+.+.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEG  101 (230)
T ss_dssp             CSCCGGGCSEEEEEECCT
T ss_pred             CcCChhhCEEEEEEEECC
Confidence            999999999999999874

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.85  E-value=3e-08  Score=53.47  Aligned_cols=71  Identities=13%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc----------------ccceeeEEEEEecCceEEEEEEEccCC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY----------------THMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+.                ...++....   .......+|.|..++
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~  208 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITR---DTSKNQYYLDLNSVT  208 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEE---ETTTTEEEEEECSCC
T ss_pred             ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEe---cCCCCEEEEEECCCC
Confidence            4577899999999998765  478999983  22210                011121110   011123579999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy9150          67 QMDAGIYECYADNM   80 (97)
Q Consensus        67 ~~~~g~y~c~~~~~   80 (97)
                      .+|.|.|.|.+.|.
T Consensus       209 ~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          209 TEDTATYYCANXDG  222 (242)
T ss_dssp             GGGCEEEEEEETTS
T ss_pred             cCcCEEEEEeccCC
Confidence            99999999999874

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.84  E-value=6.5e-08  Score=52.89  Aligned_cols=75  Identities=13%  Similarity=0.198  Sum_probs=50.5

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc-----------------ccceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY-----------------THMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..+.                 ...++.+...   ......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~   84 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD---NSKNTLYLQMS   84 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEE---TTTTEEEEEEE
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEec---CCCCEEEEEEC
Confidence            356788999999999998765  578999983  21110                 0011111100   01124579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|.|.|.|.+.+..|
T Consensus        85 ~v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           85 SLRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             SCCGGGCEEEEEEEECCSS
T ss_pred             CCChhhCEEEEEEEecCCC
Confidence            9999999999999998764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.83  E-value=5.5e-08  Score=52.02  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccC--CCeeEEEeCC--EEccc-----------------cceeeEEEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFKDG--VELYT-----------------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|+++.  ..+..                 ..++.+...   ......+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I   83 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVD---TSSSTAYMQL   83 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEE
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEe---CCCCeEEEEE
Confidence            3467889999999999998766  6789999842  21100                 011111100   0112457999


Q ss_pred             ccCCCCCCEEEEEEEEcCC
Q psy9150          63 DPATQMDAGIYECYADNMY   81 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+++.+|.|.|.|.+.+..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~  102 (227)
T 1mju_H           84 SSLTSDDSAVYYCANKLGW  102 (227)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCCcccCEEEEEEECCCC
Confidence            9999999999999998753

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.83  E-value=7.3e-09  Score=50.46  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccC----CCeeEEEeCC----EEccc-----cceeeEEEEEecC---ceEEEEEEEccCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP----RPHITWFKDG----VELYT-----HMYVNLHEWHYGT---DRIKSKIEIDPATQ   67 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~~----~~~~~-----~~~~~~~~~~~~~---~~~~~~l~i~~~~~   67 (97)
                      +..+.+.+|+.+.|.|.+...+    .+.+.|++..    ..+..     ..++...   ...   .....+|.|.+++.
T Consensus        14 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~---~~~~~~~~~~~sL~I~~v~~   90 (120)
T 3noi_A           14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPL---ASSRFLHDHQAELHIRDVRG   90 (120)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECC---CHHHHHTTCBCCEEESSCCG
T ss_pred             CCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEee---cccccccCCcEEEEEecCCh
Confidence            3467899999999999997655    4579999854    33221     1111110   000   11245799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|+|.|.|.+...
T Consensus        91 ~DsG~Y~C~v~~~  103 (120)
T 3noi_A           91 HDASIYVCRVEVL  103 (120)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             hhCEEEEEEEEEC
Confidence            9999999998743

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.83  E-value=2.4e-09  Score=65.26  Aligned_cols=69  Identities=14%  Similarity=0.155  Sum_probs=53.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+.+..|+.+.|.|.+.+ |.|.+.|++++..+.........    .   ....|.|..++..|.|.|.|.+.+..
T Consensus       541 ~~v~v~~g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~~~~~~~----~---~~~~LlI~~v~~~DsG~Y~C~A~e~~  609 (663)
T 1olz_A          541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGL----M---GRKNLLIFNLSEGDSGVYQCLSEERV  609 (663)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCC----T---TTTCEEECSCCGGGCEEEEEEEEEEC
T ss_pred             eEEEEecCCcEEEEccCCC-CCCcEEEEECCeeccccCcceEE----e---cCCeEEEEecCcccCeEEEEEEEECc
Confidence            5678889999999999988 99999999998765432211100    0   13468899999999999999999885

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.82  E-value=2.1e-07  Score=44.23  Aligned_cols=76  Identities=16%  Similarity=0.290  Sum_probs=51.0

Q ss_pred             eEEEcCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+..|+++.|.| ... ..    ..+.|++++..... .       ..........|.|..++..|.|.|.|...+..+
T Consensus        18 ~~v~~G~~VTL~C-~~~-~~~~~~~~f~l~k~g~~~~~-~-------~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~~~~~   87 (102)
T 4esk_A           18 LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFME-K-------STEPYKTEDEFEIGPVNETITGHYSCIYSKGIT   87 (102)
T ss_dssp             EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEE-E-------ECCSSCSEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CcccCCCcEEEEE-CCC-cCCCcccEEEEEECCccccc-c-------ccCCCCcceEEEeCcCCcccCeeEEEEEeCCCc
Confidence            4677899999999 633 33    56889998865431 0       001112256799999999999999999887665


Q ss_pred             c--eeEEEEEEE
Q psy9150          83 V--DTRTFKTDF   92 (97)
Q Consensus        83 ~--~~~~~~~~~   92 (97)
                      .  .+..+.|.|
T Consensus        88 ~S~~Sdpl~L~V   99 (102)
T 4esk_A           88 WSERSKTLELKV   99 (102)
T ss_dssp             EEEECCCEEEEE
T ss_pred             cccCcCCEEEEE
Confidence            3  234444444

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.82  E-value=1.3e-07  Score=50.05  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EE---cc-------ccceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VE---LY-------THMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      .+..+.+.+|+.+.|.|.+.+.+ +.+.|++..  ..   +.       ...++.+..  ........+|.|.+++.+|.
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            7 SPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF--DSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEE--CTTTCSEEEEEECSCCGGGC
T ss_pred             CCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEe--ccCCCCEEEEEECCCCHHHC
Confidence            45678899999999999997654 589999832  21   10       011111110  00112245799999999999


Q ss_pred             EEEEEEEEcCC
Q psy9150          71 GIYECYADNMY   81 (97)
Q Consensus        71 g~y~c~~~~~~   81 (97)
                      |.|.|.+.+..
T Consensus        84 G~Y~C~~~~~~   94 (207)
T 1ypz_E           84 GTYFCAADTWH   94 (207)
T ss_dssp             EEEEEEEECBC
T ss_pred             EEEEEEEecCC
Confidence            99999998763

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.82  E-value=4.4e-08  Score=56.13  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             EEcCCeEEEEEEeccc-CCC---eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           9 YVLGHKIVFICMAKGK-PRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~-~~p---~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.+|+.+.|.|.+.+. |.|   .|.|++++..+.....................|.|..++.+|.|.|.|.+.+..+.
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence            6778999999999887 323   59999988655321110000000011123457899999999999999999988764

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.82  E-value=3.2e-09  Score=56.67  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=48.3

Q ss_pred             EcCCeEEEEEEeccc-CCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          10 VLGHKIVFICMAKGK-PRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~-~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ..|+.+.|.|.+.+. |.| .+.|++++..+.... ..............+.|.|......| |.|+|.+.|..+...
T Consensus       141 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          141 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             CCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEE-CCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEe-cCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            468899999999886 666 899999886532110 00000000011224578888888778 999999999776543

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.81  E-value=1.8e-07  Score=45.58  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             eEEEcCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+..|+++.|.| ... ..    -.+.|+++|..+...        ..........|.|..++..|.|.|.|...+..+
T Consensus        18 ~vV~~G~~VTL~C-~~~-~~~~~~~~f~L~k~g~~~~~~--------~~~~~~~~a~f~i~~vt~~daG~Y~C~y~~~~~   87 (118)
T 4ety_A           18 LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFMEK--------STEPYKTEDEFEIGPVNETITGHYSCIYSKGIT   87 (118)
T ss_dssp             EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEEE--------ECCSSSSEEEEEECSCCGGGCEEEEEEEEC---
T ss_pred             CcccCCCcEEEEE-CCC-CCCcccCEEEEEECCcCcccc--------ccCCCCcceEEEeCccCccCCeEEEEEeeCCCc
Confidence            4677899999999 633 33    468899998754310        001112256799999999999999999877654


Q ss_pred             c--eeEEEEEEEE
Q psy9150          83 V--DTRTFKTDFS   93 (97)
Q Consensus        83 ~--~~~~~~~~~~   93 (97)
                      .  .+..+.|.|+
T Consensus        88 wS~~Sdpl~L~Vt  100 (118)
T 4ety_A           88 WSERSKTLELKVI  100 (118)
T ss_dssp             -CEECCCEEEEEE
T ss_pred             cccccCCEEEEEE
Confidence            2  2445545443

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.81  E-value=6.9e-08  Score=47.33  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---ccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ..+.+.+|+.+.|.|...+.+  ...+.|++.  +..   +..         ..++...     ......+|.|.+++.+
T Consensus         8 ~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~-----~~~~~~sL~I~~l~~~   82 (123)
T 3t0v_A            8 PSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGS-----KSGTSASLAISGLRSE   82 (123)
T ss_dssp             CCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEECSCCGG
T ss_pred             CeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEE-----ccCCEEEEEECCCCHH
Confidence            467899999999999997654  467999982  221   110         0111111     0112558999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|.+.+..
T Consensus        83 DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           83 DEADYYCLSWDDS   95 (123)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999988654

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.81  E-value=1.5e-07  Score=45.43  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=47.8

Q ss_pred             eeEEEcCCeEEEEEEeccc---CCCeeEEEeCC--E---Eccc-------------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGK---PRPHITWFKDG--V---ELYT-------------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~--~---~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.+.+|+.+.|.|.....   +...+.|++..  .   .+..             ..++....   .......+|.|.+
T Consensus         7 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~   83 (116)
T 3bj9_1            7 AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSK---DVARNRGYLSISE   83 (116)
T ss_dssp             EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEE---EGGGTEEEEEECS
T ss_pred             cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEe---cCCCceEEEEECC
Confidence            5889999999999998653   45679999732  1   1110             01111110   0011134799999


Q ss_pred             CCCCCCEEEEEEEEcCC
Q psy9150          65 ATQMDAGIYECYADNMY   81 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~   81 (97)
                      ++.+|+|.|.|.+.+..
T Consensus        84 ~~~~DsG~Y~C~~~~~~  100 (116)
T 3bj9_1           84 LQPEDEAMYYCAMGARS  100 (116)
T ss_dssp             CCGGGCEEEEEEECCSS
T ss_pred             CChhHCEEEEEEEeCCC
Confidence            99999999999988653

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.81  E-value=2.7e-08  Score=59.00  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             EEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceee-EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           9 YVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +..|+.+.|.|.+.+.+++  .+.|+++|..+....... ............+.|.|......|.|.|.|.+.|..+..
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            3468999999999887544  799999998765211100 000000111235678999888899999999999987654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.81  E-value=2.2e-08  Score=54.40  Aligned_cols=77  Identities=14%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             EEcCCeEEEEEEecc-cCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150           9 YVLGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +..|+.+.|.|.+.+ .|.+ .+.|++++.............  .......+.|.+......| |.|+|.+.|..+....
T Consensus       136 ~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~--~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~  212 (253)
T 3liz_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  212 (253)
T ss_dssp             ---CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEE--TTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEE
T ss_pred             cCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCcccc--CCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcce
Confidence            446889999999988 5656 799999886432110000000  0111124578899998888 9999999998876544


Q ss_pred             EE
Q psy9150          87 TF   88 (97)
Q Consensus        87 ~~   88 (97)
                      ..
T Consensus       213 ~~  214 (253)
T 3liz_H          213 DK  214 (253)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.81  E-value=1.3e-08  Score=50.04  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             eeeEEEcCCeEEEEEEeccc---CCCeeEEEeC--CE---Eccc---c----------ceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGK---PRPHITWFKD--GV---ELYT---H----------MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~--~~---~~~~---~----------~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|...+.   ....+.|++.  +.   .+..   .          .++.+..   .......+|.|.
T Consensus         8 ~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~---~~~~~~~sL~I~   84 (126)
T 2h32_A            8 PAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSK---DVARNRGYLSIS   84 (126)
T ss_dssp             SEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEE---EGGGTEEEEEEC
T ss_pred             CCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEE---eCCCCeEEEEEC
Confidence            36789999999999999764   2467999973  21   1110   0          0111110   011224579999


Q ss_pred             cCCCCCCEEEEEEEEcCCCcee
Q psy9150          64 PATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      .++.+|+|.|.|.+.+..+...
T Consensus        85 ~~~~~DsG~Y~C~~~~~~~~~~  106 (126)
T 2h32_A           85 ELQPEDEAMYYCAMGARSSEKE  106 (126)
T ss_dssp             SCCGGGCEEEEEEEECSCCCCC
T ss_pred             CCChhHCEEEEEEEEcCCCCcc
Confidence            9999999999999987766543

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.81  E-value=9.2e-08  Score=46.48  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---cc---c-----------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LY---T-----------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+..  ...+.|++.  +..   +.   .           ..++....   .......+|.|.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~   84 (120)
T 3b9v_A            8 GGGLVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISA---DTSKNTAYLQMN   84 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEE---EGGGTEEEEEEC
T ss_pred             CCEEEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEE---cCCCCEEEEEEC
Confidence            357888999999999986532  567999983  221   10   0           01121111   011224579999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      +++.+|+|.|.|.+.+.
T Consensus        85 ~~~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           85 SLRAEDTAVYYCARWGG  101 (120)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             CCCHHHCEEEEEEEEcC
Confidence            99999999999998865

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.80  E-value=8.1e-08  Score=46.81  Aligned_cols=72  Identities=15%  Similarity=0.346  Sum_probs=47.8

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeC--CE---Ecc---c----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKD--GV---ELY---T----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~---~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      .+.+.+|+.+.|.|...+.+  ...+.|++.  +.   .+.   .          ..++....   ........|.|.++
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~~   85 (121)
T 1kxv_C            9 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQ---GNAKNTAYLQMDSL   85 (121)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEE---CSSTTEEEEEECSC
T ss_pred             CEEEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEE---ECCCCEEEEEECCC
Confidence            57888999999999987543  467999973  21   111   0          01111110   11122457999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy9150          66 TQMDAGIYECYADNM   80 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~   80 (97)
                      +.+|+|.|.|.+.+.
T Consensus        86 ~~~Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           86 KPDDTAMYYCKPSLR  100 (121)
T ss_dssp             CGGGCEEEEEEEEES
T ss_pred             CHHHCEEEEEEEEec
Confidence            999999999998875

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.80  E-value=4e-08  Score=47.41  Aligned_cols=77  Identities=19%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---c-ccc-----------ceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---L-YTH-----------MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~-~~~-----------~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      .+..+.+.+|+.+.|.|...+..  ...+.|++.  +..   + ...           .++...   ........+|.|.
T Consensus         5 ~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L~I~   81 (114)
T 1u9k_A            5 EEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLK---HDPSEAMLQVQMT   81 (114)
T ss_dssp             CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEE---EEGGGTEEEEEEC
T ss_pred             CCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEE---ecCcCCEEEEEEC
Confidence            46678899999999999986543  457999984  221   1 000           011110   0011224579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|+|.|.|.+.+..+
T Consensus        82 ~~~~~Dsg~Y~C~~~~~~~  100 (114)
T 1u9k_A           82 DLQVTDSGLYRCVIYHPPN  100 (114)
T ss_dssp             SCCGGGCEEEEEEEECTTS
T ss_pred             CCChHHCEEEEEEEecCCC
Confidence            9999999999999988664

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.80  E-value=1.4e-07  Score=46.10  Aligned_cols=72  Identities=18%  Similarity=0.324  Sum_probs=47.6

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---cc---c-----------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LY---T-----------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.+.+|+.+.|.|.+.+..  ...+.|++.  +..   +.   .           ..++...   .........|.|.+
T Consensus        11 ~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L~I~~   87 (123)
T 2p45_B           11 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTIS---RDKGKNTVYLQMDS   87 (123)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEE---CCTTSSEEEEEESS
T ss_pred             CEEEeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEE---EeCCCCEEEEEECC
Confidence            57889999999999986532  567999973  221   10   0           0111111   01112345799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|.|.|.|.+.+.
T Consensus        88 ~~~~Dsg~Y~C~~~~~  103 (123)
T 2p45_B           88 LKPEDTATYYCAAGGY  103 (123)
T ss_dssp             CCGGGCEEEEEEESSC
T ss_pred             CCHHHCEEEEEEEEec
Confidence            9999999999998764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.80  E-value=3.5e-08  Score=53.21  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEeCC--EEcc------c-----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFKDG--VELY------T-----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.+.+  .+.+.|+++.  ....      .           ..++....   .......+|.|..+
T Consensus       137 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v  213 (247)
T 1svz_A          137 ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSL---DTSTSTAFLQINNL  213 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEE---EGGGTEEEEEECSC
T ss_pred             eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEE---ecCCCEEEEEECCC
Confidence            3578899999999998864  5689999842  2110      0           11111110   01112458999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy9150          66 TQMDAGIYECYADNM   80 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~   80 (97)
                      +.+|.|.|.|.+.|.
T Consensus       214 ~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          214 KNEDTATYFCVRDRH  228 (247)
T ss_dssp             CGGGCEEEEEEEEEG
T ss_pred             ChhHCEEEEEEEecc
Confidence            999999999999985

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.80  E-value=3.2e-08  Score=49.28  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=48.4

Q ss_pred             eeEEEcCCeEEEEEEecccC---CCeeEEEeCC--EE---ccc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKP---RPHITWFKDG--VE---LYT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+.+.+|+.+.|.|.+...+   .+.+.|++..  ..   +..         ..++...     ......+|.|.+++.+
T Consensus        14 ~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~-----~~~~~~sL~I~~v~~~   88 (135)
T 1p4b_L           14 ALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGS-----LIGDKAALTITGAQTE   88 (135)
T ss_dssp             EEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEEESCCGG
T ss_pred             cEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEE-----cCCCEEEEEECCCChh
Confidence            38899999999999997654   5679999732  11   110         1112111     0111457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |.|.|.|.+.+..
T Consensus        89 DsG~Y~C~~~~~~  101 (135)
T 1p4b_L           89 DEAIYFCALWYSN  101 (135)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEEecCC
Confidence            9999999988653

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.79  E-value=7.4e-07  Score=43.67  Aligned_cols=85  Identities=13%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             eeeEEEcCCeEEEEEEecccC-CCeeEEEeCCE-----Ec-ccc--------ceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP-RPHITWFKDGV-----EL-YTH--------MYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~~-----~~-~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ..+.+.+|+.+.|.|...... ...+.|++...     .+ ...        .++.+.   ........+|.|.+++.+|
T Consensus        10 ~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~---~~~~~~~~sL~I~~l~~~D   86 (124)
T 2nms_A           10 TTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIK---DNQKNRTFTVTMEDLMKTD   86 (124)
T ss_dssp             SEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEE---EETTTTEEEEEECSCCGGG
T ss_pred             cEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEE---EcCcCCEEEEEEeCCCHHH
Confidence            567889999999999986543 23589998431     11 110        011110   0111224579999999999


Q ss_pred             CEEEEEEEEcCCCceeEEEEEEE
Q psy9150          70 AGIYECYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        70 ~g~y~c~~~~~~g~~~~~~~~~~   92 (97)
                      +|.|.|.+..........+.|.|
T Consensus        87 sg~Y~C~~~~~~~~~~~~v~L~V  109 (124)
T 2nms_A           87 ADTYWCGIEKTGNDLGVTVQVTI  109 (124)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCCccEEEEEEE
Confidence            99999998866443344444444

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.79  E-value=1.7e-07  Score=55.03  Aligned_cols=77  Identities=17%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             CceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +.....                 ..++.+..   .......+|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~   83 (475)
T 1iga_A            7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR---DTSATTAYMG   83 (475)
T ss_pred             cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEE---cCCCCeEEEE
Confidence            45678899999999999998754  567999984  221100                 01111110   0011245799


Q ss_pred             EccCCCCCCEEEEEEEEcCCC
Q psy9150          62 IDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      |.+++.+|.|.|.|.+.+..|
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~  104 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGG  104 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCC
Confidence            999999999999999998765

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.78  E-value=2.6e-10  Score=60.46  Aligned_cols=74  Identities=11%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCC-----CeeEEEeCCEEccc-------------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPR-----PHITWFKDGVELYT-------------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~-----p~i~w~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+.+|+.+.|.|.+.+.+.     +.+.|++++.....             ..+..+.  .........+|.|.+++
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~sL~I~~v~   80 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALF--PDLLVQGNASLRLQRVR   80 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECC--TTTGGGTBCCEEECSCC
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEe--cccccCCeEEEEECCcc
Confidence            4566789999999999987654     67999986533210             0000000  00000013569999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy9150          67 QMDAGIYECYADNM   80 (97)
Q Consensus        67 ~~~~g~y~c~~~~~   80 (97)
                      ..|.|.|.|.+.+.
T Consensus        81 ~~D~G~Y~C~~~~~   94 (222)
T 4i0k_A           81 VTDEGSYTCFVSIQ   94 (222)
T ss_dssp             GGGCSCEEEEEEEC
T ss_pred             cccCEEEEEEEEeC
Confidence            99999999999875

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.77  E-value=1.1e-08  Score=55.38  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=45.1

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .|..+.|.|.+.|.+++  .+.|+++|..+..........  ..+.  ...+.|.+......+.|.|+|.+.|....
T Consensus       137 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~--~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          137 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTM--DTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEE--CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceE--CCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            36789999999885443  799999999875322111110  1111  22344555554445689999999998754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.77  E-value=2.2e-08  Score=55.14  Aligned_cols=74  Identities=12%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             ceeeEEEcCCeEEEEEEeccc--CCCeeEEEeCC--EEccc-----------------cceeeEEEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK--PRPHITWFKDG--VELYT-----------------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  .....                 ..++.+..   .......+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I   83 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITA---DQSTRTAYMDL   83 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEE---ETTTTEEEEEE
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEE---eCCCCEEEEEE
Confidence            456788999999999999775  56789999732  11110                 01111110   01112357999


Q ss_pred             ccCCCCCCEEEEEEEEcC
Q psy9150          63 DPATQMDAGIYECYADNM   80 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~   80 (97)
                      ..++.+|.|.|.|.+.+.
T Consensus        84 ~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           84 RSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             CSCCSTTCEECCEEECSS
T ss_pred             CCCChhhCEEEEEEEecC
Confidence            999999999999999886

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.77  E-value=4.6e-08  Score=53.49  Aligned_cols=71  Identities=18%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEeC--CEE---cc---c-----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFKD--GVE---LY---T-----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~~--~~~---~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.+.+.  +.+.|+++  +..   +.   .           ..++.+..   .......+|.|..+
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v  224 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTV---DTSSSTAFMQLNSL  224 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEE---cCCCCEEEEEECcC
Confidence            35778999999999987764  78999985  221   10   0           01111110   01112458999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy9150          66 TQMDAGIYECYADNM   80 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~   80 (97)
                      +.+|.|.|.|.+.|.
T Consensus       225 ~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          225 TSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             CcccCEEEEEEEecC
Confidence            999999999999985

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.77  E-value=1e-07  Score=46.07  Aligned_cols=77  Identities=16%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             ceeeEEEcCCeEEEEEEecc--cCCCeeEEEeCC-EE---cc----ccce-eeE-----EEEEecCceEEEEEEEccCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKG--KPRPHITWFKDG-VE---LY----THMY-VNL-----HEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~~-~~---~~----~~~~-~~~-----~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +..+.+.+|+.+.|.|....  .....+.|++.. ..   ..    .... ...     ............+|.|.+++.
T Consensus         3 ~~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   82 (116)
T 3bia_X            3 EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNR   82 (116)
T ss_dssp             CEEEEEETTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCG
T ss_pred             ccEEEEeeCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCCh
Confidence            46788999999999999862  233469999854 21   11    0000 000     000001112244799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~Y~C~v~~~   95 (116)
T 3bia_X           83 GDSGVYCCRIEVP   95 (116)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             hHCEEEEEEEEcC
Confidence            9999999998754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.77  E-value=3.6e-08  Score=57.81  Aligned_cols=75  Identities=13%  Similarity=0.111  Sum_probs=49.0

Q ss_pred             EEcCCeEEEEEEecccCC---CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           9 YVLGHKIVFICMAKGKPR---PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~---p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +.+|+.+.|.|.+.|.++   +.+.|  ++..+...................+.|.|..+...|.|.|.|.+.|..+...
T Consensus       259 ~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~  336 (475)
T 1iga_A          259 LLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP  336 (475)
T ss_pred             hccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc
Confidence            467999999999988654   58999  4433322110000000000112355799999999999999999999988753

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.76  E-value=1.5e-07  Score=45.91  Aligned_cols=71  Identities=15%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CE---Ecc---c-----------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GV---ELY---T-----------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~---~~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|...+.+  ...+.|++.  +.   .+.   .           ..++....   .......+|.|.
T Consensus        10 ~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~   86 (121)
T 2xt1_B           10 GGGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITR---DDDKNILYLQMN   86 (121)
T ss_dssp             CCEEEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE---ETTTTEEEEEEC
T ss_pred             CCEEEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEE---eCCCCEEEEEEC
Confidence            357889999999999997543  567999983  22   110   0           01111111   011124579999


Q ss_pred             cCCCCCCEEEEEEEE
Q psy9150          64 PATQMDAGIYECYAD   78 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~   78 (97)
                      +++.+|+|.|.|.+.
T Consensus        87 ~v~~~DsG~Y~C~~~  101 (121)
T 2xt1_B           87 DLKPEDTAMYYCKAS  101 (121)
T ss_dssp             SCCGGGCEEEEEEET
T ss_pred             CCCHHHCEEEEEEEE
Confidence            999999999999986

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.76  E-value=6.1e-08  Score=56.51  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=51.3

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEccc-----------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELYT-----------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +.....                 ..++.+...   ......+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~   84 (457)
T 1hzh_H            8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTAD---TSANTAYMELR   84 (457)
T ss_dssp             CCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEEEC
T ss_pred             CceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEe---CCCCEEEEEEC
Confidence            457789999999999998765  678999983  321100                 111211100   01123579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      +++.+|.|.|.|.+.|..|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~  103 (457)
T 1hzh_H           85 SLRSADTAVYYCARVGPYS  103 (457)
T ss_dssp             SCCGGGCEEEEEEECCCCC
T ss_pred             CCCcccCEEEEEEEecCCc
Confidence            9999999999999998765

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=98.76  E-value=1.9e-07  Score=44.11  Aligned_cols=67  Identities=18%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCce---EEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDR---IKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .|....|.|.+.|+.++  .+.|+++|..+.. .....  .....+.   ..+.|.   +..++.+.|.|.+.+....
T Consensus        17 ~~~~~~L~C~~~gfyP~~i~v~W~k~g~~~~~-~~~~~--~~~~~dgty~~~s~l~---v~~~~~~~ytC~V~H~~l~   88 (99)
T 1lk2_B           17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPK-VEMSD--MSFSKDWSFYILAHTE---FTPTETDTYACRVKHDSMA   88 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTT-CEEEE--EEECTTCCEEEEEEEE---ECCCSSCCEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEECCEECCC-ceeCC--eEECCCCcEEEEEEEE---EeCCCCCEEEEEEEcCCCC
Confidence            35578999999997665  6999999988752 21111  1112221   122333   3456678899999987543

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.76  E-value=8e-08  Score=51.17  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEE---ccc--c-------ceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVE---LYT--H-------MYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~---~~~--~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +..+.+.+|+.+.|.|.+.+...+.+.|++.  +..   +..  .       .++....   ........|.|..++.+|
T Consensus        10 p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~---~~~~~~~sL~I~~~~~~D   86 (210)
T 2eys_A           10 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL---DADTKQSSLHITASQLSD   86 (210)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE---ETTTTEEEEEESSCCGGG
T ss_pred             CCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEE---cCCCCEEEEEEccCCccc
Confidence            4567899999999999998776778999983  221   111  1       1111100   011124589999999999


Q ss_pred             CEEEEEEEEcC
Q psy9150          70 AGIYECYADNM   80 (97)
Q Consensus        70 ~g~y~c~~~~~   80 (97)
                      .|.|.|.+.+.
T Consensus        87 sg~Y~C~~~~~   97 (210)
T 2eys_A           87 SASYICVVSDR   97 (210)
T ss_dssp             CEEEEEEEESC
T ss_pred             CceEEEEEEcc
Confidence            99999998873

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.76  E-value=1.7e-07  Score=44.69  Aligned_cols=81  Identities=15%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC--ce
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN--VD   84 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g--~~   84 (97)
                      .+..|+++.|.|.... ....+.|+++|....... .....    ........|.|..++..|.|.|.|...+..+  ..
T Consensus        19 vv~~G~~VtL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~----~~~~~~~~f~i~~vt~~~aG~Y~C~~~~~~~~S~~   93 (106)
T 3kgr_A           19 VIPLGSHVTFVCRGPV-GVQTFRLERESRSTYNDTEDVSQA----SPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQ   93 (106)
T ss_dssp             EEETTCCEEEEEEECT-TCCEEEEEEGGGTEEEEECCCEEE----ETTEEEEEEEESSCCGGGCEEEEEEEEETTEECCC
T ss_pred             ccCCCCeEEEEEEccC-CCcEEEEEECCCcccccccccccc----CCCCcceEEEecCCCcCCCceEEEEeeCCCcccCC
Confidence            5778999999999854 345688999875442100 00000    0112246799999999999999999887543  23


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      +..+.|.|+
T Consensus        94 Sdpl~L~Vt  102 (106)
T 3kgr_A           94 SDYLELLVK  102 (106)
T ss_dssp             CCCEEEEEE
T ss_pred             CCCEEEEEe
Confidence            445555554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.76  E-value=3.4e-08  Score=53.04  Aligned_cols=71  Identities=14%  Similarity=0.330  Sum_probs=47.3

Q ss_pred             CCeEEEEEEecc-cCCC-eeEEEeCCEEccccceee--EEEEEecCceEEEEEEEccCCCCC-CEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVN--LHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~-~~~p-~i~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~~~g   82 (97)
                      |+.+.|.|.+.+ .|.+ .+.|+++|..+.......  ............+.|.+......| .|.|+|.+.|...
T Consensus       137 g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          137 KQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            688999999988 4555 688999999886432211  000000111224468888888777 7799999998764

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.75  E-value=2.6e-07  Score=45.34  Aligned_cols=74  Identities=16%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEE---ccc------------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVE---LYT------------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~---~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ++..+.+.+|+.+.|.|.........+.|++.  +..   +..            ..++....    ......+|.|.++
T Consensus        11 ~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~----~~~~~~sL~I~~~   86 (125)
T 3r8b_B           11 SPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASR----PSQENFSLILELA   86 (125)
T ss_dssp             ECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEE----EETTEEEEEETTC
T ss_pred             cCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEe----cCCCEEEEEECCC
Confidence            45567889999999999997655558999972  221   100            01111110    0112567999999


Q ss_pred             CCCCCEEEEEEEEcC
Q psy9150          66 TQMDAGIYECYADNM   80 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~   80 (97)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           87 TPSQTSVYFCASGGG  101 (125)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChhhCEEEEEEEcCC
Confidence            999999999998753

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.75  E-value=5.9e-08  Score=53.03  Aligned_cols=72  Identities=14%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             eeEEEcCCeEEEEEEecccCC--CeeEEEeC--CEEcc-------------------ccceeeEEEEEecCceEEEEEEE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPR--PHITWFKD--GVELY-------------------THMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~--p~i~w~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      ...+.+|+.+.|.|.+.+.+.  +.+.|+++  +..+.                   ...++....   .......+|.|
T Consensus       160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I  236 (268)
T 1x9q_A          160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISR---DDSKSSVYLQM  236 (268)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEE---EGGGTEEEEEE
T ss_pred             ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEE---eCCCCEEEEEE
Confidence            456788999999999987653  78999984  22210                   011111110   00111357999


Q ss_pred             ccCCCCCCEEEEEEEEcC
Q psy9150          63 DPATQMDAGIYECYADNM   80 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~   80 (97)
                      ..++.+|.|.|.|.+.+.
T Consensus       237 ~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          237 NNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEccC
Confidence            999999999999999874

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.75  E-value=1.1e-07  Score=45.93  Aligned_cols=73  Identities=14%  Similarity=0.234  Sum_probs=49.1

Q ss_pred             ceeeEEEcCCeEEEEEEeccc-CCCeeEEEeC--CE---Ecc---c----------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK-PRPHITWFKD--GV---ELY---T----------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~--~~---~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +..+.+.+|+.+.|.|...+. +.+.+.|++.  +.   .+.   .          ..++...     ......+|.|.+
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~-----~~~~~~~L~I~~   82 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGS-----SSGADRYLSISN   82 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEE-----EETTEEEEEESS
T ss_pred             CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEE-----ccCCEEEEEECC
Confidence            346778899999999999765 5678999972  21   111   0          0111111     011135799999


Q ss_pred             CCCCCCEEEEEEEEcCC
Q psy9150          65 ATQMDAGIYECYADNMY   81 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~   81 (97)
                      ++.+|+|.|.|.+.+..
T Consensus        83 ~~~~Dsg~Y~C~~~~~~   99 (115)
T 2otu_A           83 IQPEDEAIYICGVGDTI   99 (115)
T ss_dssp             CCGGGCEEEEEEEEECC
T ss_pred             CChhHCEEEEEEEecCC
Confidence            99999999999988654

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.75  E-value=8.5e-08  Score=46.26  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeCCE-----E---cc---c-----------cceeeEEEEEecCceEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKDGV-----E---LY---T-----------HMYVNLHEWHYGTDRIKSK   59 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~-----~---~~---~-----------~~~~~~~~~~~~~~~~~~~   59 (97)
                      .+..+.+.+|+.+.|.|...+. ....+.|++...     .   +.   .           ..++.+..   .......+
T Consensus         4 ~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~   80 (115)
T 2atp_B            4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILE---SSDSRRPF   80 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEE---STTSSSCE
T ss_pred             CCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEE---eCCCCEEE
Confidence            4567789999999999999764 466799998331     1   10   0           01121110   00112347


Q ss_pred             EEEccCCCCCCEEEEEEEEcC
Q psy9150          60 IEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus        60 l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      |.|.+++.+|+|.|.|.+...
T Consensus        81 L~I~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           81 LSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEECS
T ss_pred             EEECCCCHHHCEEEEEeEccC
Confidence            999999999999999998753

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.75  E-value=1.4e-07  Score=45.84  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---ccc--------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LYT--------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~~--------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+.+|+.+.|.|...+..  ...+.|++.  +..   +..              ..++....   .......+|.|.
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~   84 (120)
T 1mfa_H            8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTA---VTSTTTAYMELS   84 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEEC
T ss_pred             CCEEEeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEE---eCCCCEEEEEEC
Confidence            356788999999999986532  467999972  221   100              01111110   011224579999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      +++.+|+|.|.|.+.+.
T Consensus        85 ~~~~~Dsg~Y~C~~~~~  101 (120)
T 1mfa_H           85 SLTSEDSAVYYCTRGGH  101 (120)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCCHHHCEEEEEEEecC
Confidence            99999999999998865

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.74  E-value=4.4e-07  Score=44.04  Aligned_cols=87  Identities=17%  Similarity=0.266  Sum_probs=53.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccC---CCeeEEEeCCE--E---cc-c--------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP---RPHITWFKDGV--E---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~~~--~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      +..+.+.+|+.+.|.|......   ...+.|++...  .   +. .        ..++....   .......+|.|.+++
T Consensus         7 p~~v~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~l~   83 (117)
T 1xed_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN---FPENGTFVVNIAQLS   83 (117)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             CCeEEEecCCCEEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEe---cCCCCEEEEEECCCC
Confidence            4568899999999999986531   35699998432  1   11 0        11222211   112224579999999


Q ss_pred             CCCCEEEEEEEEcCCCceeEEEEEEEEEe
Q psy9150          67 QMDAGIYECYADNMYNVDTRTFKTDFSIT   95 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~~~~~~~~~~~~   95 (97)
                      .+|+|.|.|.+... + ..-.+...+.++
T Consensus        84 ~~DsG~Y~C~v~~~-~-~~l~f~~~~~~~  110 (117)
T 1xed_A           84 QDDSGRYKCGLGIN-S-RGLSFDVSLEVL  110 (117)
T ss_dssp             GGGCEEEEEEESCG-G-GCCEEEEEEEEE
T ss_pred             hHHCEEEEEEEEeC-C-CCeeEEEEEEEe
Confidence            99999999988653 2 233444445544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	8e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	8e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	9e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	6e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-06
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	9e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-04
d1l6xa2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	1e-04
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	1e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	7e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-04
d1i1ca2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	9e-04
d1k5nb_	100	b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapi	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d1o0va1	104	b.1.1.2 (A:228-330) Immunoglobulin heavy chain eps	0.001
d1igtb4	102	b.1.1.2 (B:363-474) Immunoglobulin heavy chain gam	0.001
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.001
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	0.002
d1mjul2	107	b.1.1.2 (L:108-214) Immunoglobulin light chain kap	0.002
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.002
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.002
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.003
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-12
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           + + F C A G P P + W K+G E      +  ++           + ++     D G
Sbjct: 20 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKG 75

Query: 72 IYECYADNMYNVDTRTFK 89
           Y C  +N Y     T+ 
Sbjct: 76 NYTCVVENEYGSINHTYH 93

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-11
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 10  VLGHKIVFICMAKGKPRPHITWFKDGVEL--------YTHMYVNLHEWHYGTDRIKSKIE 61
           V+G  + F+C      +PHI W K   +           ++ V        TD+    + 
Sbjct: 18  VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 77

Query: 62  IDPATQMDAGIYECYADNMYNVDTRTFK 89
           I   T  DAG Y C A N   +   +  
Sbjct: 78  IRNVTFEDAGEYTCLAGNSIGISFHSAW 105

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 8e-11
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D +   G  +       G      TW K   ++    ++ +     G+     K+ I  A
Sbjct: 9  DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS-----KLTILAA 63

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
           Q   G Y    +N          
Sbjct: 64 RQEHCGCYTLLVENKLGSRQAQVN 87

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 8e-10
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          LG  +  +C A G P P ++W KDG  +         +  +      S++ I    + D 
Sbjct: 19 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVDKNDE 75

Query: 71 GIYECYADNMYNVDTRTFK 89
            Y C A+N       +  
Sbjct: 76 AEYVCIAENKAGEQDASIH 94

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 9e-10
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 7  YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL--YTHMYVNLHEWHYGTDRIKSKIEIDP 64
          +  V  H         G+P P + W  +G  L   + ++    E           + ++ 
Sbjct: 10 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 69

Query: 65 ATQMDAGIYECYADNMYNVDTRTFK 89
           T ++ G Y   A N +   + +  
Sbjct: 70 PTHVNNGNYTLLAANPFGQASASIM 94

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 4e-09
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 2  HSHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIK 57
                   +G++ V  C    G P    +WFKDG+ + T             +  D   
Sbjct: 7  TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 66

Query: 58 SKIEIDPATQMDAGIYECYADNMYNVDTRT 87
            +  DP T  D+G Y C A N Y    R+
Sbjct: 67 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 96

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 6e-09
 Identities = 19/82 (23%), Positives = 28/82 (34%)

Query: 8  EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
               H        KG P+P + WF +G  L    Y+               +++D  T 
Sbjct: 12 SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71

Query: 68 MDAGIYECYADNMYNVDTRTFK 89
          M+ G Y   A N Y  D +   
Sbjct: 72 MNNGDYTLIAKNEYGKDEKQIS 93

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-08
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  +   C  +G   P I W KDG  +     + +             + +    + DAG
Sbjct: 11 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI---GFLSLKSVERSDAG 67

Query: 72 IYECYADNMYNVDT 85
           Y C  ++    + 
Sbjct: 68 RYWCQVEDGGETEI 81

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 45.9 bits (108), Expect = 1e-08
 Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 10/78 (12%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G  +   C   G P P++ W  +   L                     + I      D G
Sbjct: 18 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG----------LVIKGVKNGDKG 67

Query: 72 IYECYADNMYNVDTRTFK 89
           Y C A N +        
Sbjct: 68 YYGCRATNEHGDKYFETL 85

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-08
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 4  HFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYG--TDRIKSKI 60
          +      +G++ V  C  + G P    TWFKDG+ + T+        +     +    ++
Sbjct: 9  NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 68

Query: 61 EIDPATQMDAGIYECYADNMYNVDTRT 87
            DP +  D G Y C A N Y     +
Sbjct: 69 VFDPLSASDTGEYSCEARNGYGTPMTS 95

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.7 bits (102), Expect = 8e-08
 Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D   + G  +   C A G P P I W                         +  + I   
Sbjct: 14 DTYALTGQMVTLECFAFGNPVPQIKW-----------RKLDGSQTSKWLSSEPLLHIQNV 62

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
             D G YEC A+N+   DT   +
Sbjct: 63 DFEDEGTYECEAENIKGRDTYQGR 86

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
          G    F C   G+P P +TW +        +          T + KS  EI      D G
Sbjct: 14 GESARFSCDTDGEPVPTVTWLR-----KGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 68

Query: 72 IYECYADNMYNVDTRTFK 89
           Y    +N        F 
Sbjct: 69 NYSVVVENSEGKQEAEFT 86

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
                G    F     GKP P   W+K+GV++          + Y  +    ++ I   
Sbjct: 13 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD----RIYWYWPEDNVCELVIRDV 68

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
          T  D+      A N+    +    
Sbjct: 69 TGEDSASIMVKAINIAGETSSHAF 92

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (97), Expect = 6e-07
 Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 5/84 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            E   G    F C       P +TW KD  EL   +                 + I+  
Sbjct: 10 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN-----DYGLTINRV 64

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
             D G Y   A N Y        
Sbjct: 65 KGDDKGEYTVRAKNSYGTKEEIVF 88

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-06
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 8  EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
          E  L  +     + +G P P + W  +G  L     +++  +  G    +  +  +  T 
Sbjct: 13 EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS-EGCLLFNKPTH 71

Query: 68 MDAGIYECYADNMYNVDTRTFK 89
           + G Y   A N      +T  
Sbjct: 72 YNNGNYTLIAKNPLGTANQTIN 93

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 1e-06
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            E+  G   V +C       P I W   G ++     V          +I+        
Sbjct: 10 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG------I 63

Query: 66 TQMDAGIYECYADNMYNVDTRT 87
           + D G Y C    +   +   
Sbjct: 64 KKTDEGTYRCEGRILARGEINF 85

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.6 bits (94), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D E  +G  + + C+A GKPRP + W +DG  L +   + +                   
Sbjct: 10 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL---------RFSKL 60

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
             D+G+Y+C A+N +     + +
Sbjct: 61 VLEDSGMYQCVAENKHGTVYASAE 84

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-06
 Identities = 6/71 (8%), Positives = 12/71 (16%), Gaps = 6/71 (8%)

Query: 12 GHKIVFICMAKG---KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
          G      C            +  F+    L+   +                       + 
Sbjct: 17 GKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATAT---FNSTADRED 73

Query: 69 DAGIYECYADN 79
              + C A  
Sbjct: 74 GHRNFSCLAVL 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D     G ++   C    +   ++ WFK+G E+          +    +  K  + I+ A
Sbjct: 9  DTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPK---SRYRIRVEGKKHILIIEGA 64

Query: 66 TQMDAGIYECYADN 79
          T+ DA  Y      
Sbjct: 65 TKADAAEYSVMTTG 78

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-06
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 24/102 (23%)

Query: 12  GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYG------------------- 52
           G+K+       G P P + W K   +          +                       
Sbjct: 24  GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 83

Query: 53  -----TDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
                T + +S   ++ A + D G+Y     N    D     
Sbjct: 84  RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLT 125

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 39.9 bits (92), Expect = 4e-06
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D E V G    F C  +G P P + WFKD   +    +  +     G       + I   
Sbjct: 17 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG----NCSLTISEV 72

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
             D   Y C A N     T T +
Sbjct: 73 CGDDDAKYTCKAVNSLGEATCTAE 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.5 bits (91), Expect = 4e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          D     G   +  CM    P  +  +FK+G ++  +    +   +  +     ++     
Sbjct: 12 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLFKTT 68

Query: 66 TQMDAGIYECYADN 79
             D G+Y C  DN
Sbjct: 69 LPEDEGVYTCEVDN 82

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.7 bits (89), Expect = 7e-06
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
            K+   C A+  P     W  +G EL                     +  +P    DAG
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL------VISNPVKAKDAG 75

Query: 72 IYECYADNMY 81
           Y+C A N  
Sbjct: 76 SYQCVATNAR 85

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 2/83 (2%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          + E   G    F C A G+       +  G+                + R  +   +   
Sbjct: 10 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGI--DVRDAPLKEIKVTSSRRFIASFNVVNT 67

Query: 66 TQMDAGIYECYADNMYNVDTRTF 88
          T+ DAG Y C       V    +
Sbjct: 68 TKRDAGKYRCMIRTEGGVGISNY 90

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 12 GHKIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          G      C  K    RPH+TW K        +      W    +     +  +P    D 
Sbjct: 18 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 77

Query: 71 GIYECYADN 79
          G Y C A+ 
Sbjct: 78 GSYRCSANF 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 5e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 7  YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
          Y+   GHKI             + W K+G E+         ++ + +   K  + I   +
Sbjct: 16 YQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG----SKYIFESIGAKRTLTISQCS 70

Query: 67 QMDAGIYECYADN 79
            D   Y+C    
Sbjct: 71 LADDAAYQCVVGG 83

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 9e-05
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 8   EYVLGHKIVFICMAKGKPRPHITWFKDGVE-------LYTHMYVNLHEWHYGTDRIKSKI 60
           E  LG +I  IC   G+      W  +G         L    Y   +  +     + + +
Sbjct: 13  EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 72

Query: 61  EIDPATQMDAGI-YECYADNMYNVDTRTFK 89
            I           + C+A N + +D    +
Sbjct: 73  NISEIESRFYKHPFTCFAKNTHGIDAAYIQ 102

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 1e-04
 Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 9/71 (12%)

Query: 10 VLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
          + G  +   C     +    + W        +H                  + +      
Sbjct: 19 LPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR--------LLLRSVQLH 70

Query: 69 DAGIYECYADN 79
          D+G Y CY   
Sbjct: 71 DSGNYSCYRAG 81

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 10 VLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
          +  +++   C+ KG       + W  +G     +          G+  + SK+ +D +  
Sbjct: 17 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW 76

Query: 68 MDAGIYEC 75
              ++ C
Sbjct: 77 QQGNVFSC 84

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 1e-04
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 11 LGHKIVFICMAKGK--PRPHITWFKDGVELYTHMYVNLH--EWHYGTDRIKSKIEIDPAT 66
             K    C+ +        + W  + V+L    +      +       + S++E+  A 
Sbjct: 18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE 77

Query: 67 QMDAGIYEC 75
                + C
Sbjct: 78 WEQKDEFIC 86

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (80), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
          G  + FIC AK   P   + W +          ++ +            + I      DA
Sbjct: 17 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN----------GILTIRNVQPSDA 66

Query: 71 GIYECYADNMYNVDTRTFK 89
          G Y C   NM+ +D  T  
Sbjct: 67 GTYVCTGSNMFAMDQGTAT 85

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 3e-04
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-----SKIEIDP 64
          V+   + F   +   P   + W K   ++          +    +R+        + I  
Sbjct: 8  VVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66

Query: 65 ATQMDAGIYECYADN 79
           T  D   YE  + N
Sbjct: 67 LTSSDEDEYEMESPN 81

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 5e-04
 Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 7/91 (7%)

Query: 6   DYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELY----THMYVNLHEWHYGTDRIKS 58
           D E  +G  I F     G      P + WFK                   +   +     
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 59  KIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
           ++ I  A     G Y C        D   F 
Sbjct: 73  ELHITDAQPAFTGGYRCEVSTKDKFDCSNFN 103

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 7e-04
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY--GTDRIKSKIEIDPATQMD 69
          G   + +C ++  P      +    +      +N  E  +   + + +S++ I+      
Sbjct: 17 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 76

Query: 70 -AGIYECYADNMYNVDTRTFK 89
            G Y C   +    D     
Sbjct: 77 DPGQYRCNGTSSKGSDQAIIT 97

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.4 bits (75), Expect = 8e-04
 Identities = 15/84 (17%), Positives = 21/84 (25%), Gaps = 5/84 (5%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
            +   G          G P P  TW                E         + I    A
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDPTATWTV-----GDSGAALAPELLVDAKSSTTSIFFPSA 65

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
           + D+G Y+    N    D   F+
Sbjct: 66 KRADSGNYKLKVKNELGEDEAIFE 89

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (76), Expect = 9e-04
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 10 VLGHKIVFICMAKG-KPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
          +   ++   CM KG  P      W  +G     +          G+  + SK+ +   T 
Sbjct: 17 MTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETW 76

Query: 68 MDAGIYEC 75
               + C
Sbjct: 77 QQGNTFTC 84

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 5/67 (7%)

Query: 11 LGHKIVFICMAKGKPRPHI--TWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
           G      C   G     I     K+G  +    + +L      +  +    E  P    
Sbjct: 18 NGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPT--- 74

Query: 69 DAGIYEC 75
          +   Y C
Sbjct: 75 EKDEYAC 81

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.001
 Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 4  HFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI 62
                      V  C     + +  ITW+KD  +             +     K K+  
Sbjct: 9  KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-----KEKLWF 63

Query: 63 DPATQMDAGIYECYADNMYNVDTRTFK 89
           PA   D+G Y C   N          
Sbjct: 64 VPAKVEDSGHYYCVVRNSSYCLRIKIS 90

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.001
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 14 KIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
           I  +C+  G  P    ITW +DG  +   +              +S++ +     +   
Sbjct: 23 TIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 82

Query: 72 IYEC 75
           Y C
Sbjct: 83 TYTC 86

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 8  EYVLGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          E +   ++   CM     P   ++ W  +G     +          G+  + SK+ ++  
Sbjct: 15 EEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKK 74

Query: 66 TQMDAGIYEC 75
            ++   Y C
Sbjct: 75 NWVERNSYSC 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.001
 Identities = 14/84 (16%), Positives = 21/84 (25%), Gaps = 18/84 (21%)

Query: 6  DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
          ++ +    +   +C A G P P +   KDG                              
Sbjct: 13 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD--------------- 57

Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
               G Y C A +     TR   
Sbjct: 58 ---LEGTYLCRARSTQGEVTREVT 78

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 3/85 (3%)

Query: 8   EYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHY-GTDRIKSKIEIDP 64
           E +   K   +C           + W  DG  +   M                S + +  
Sbjct: 16  EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTA 75

Query: 65  ATQMDAGIYECYADNMYNVDTRTFK 89
                   Y C   +  +   +T  
Sbjct: 76  RAWERHSSYSCQVTHEGHSSNKTLS 100

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 8  EYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHY--GTDRIKSKIEID 63
          E +       +C          ++ W  DG E    +  +  +      T  + S + + 
Sbjct: 16 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 75

Query: 64 PATQMDAGIYEC 75
                   Y C
Sbjct: 76 KDEYERHNSYTC 87

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.002
 Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 3/90 (3%)

Query: 3   SHFDYEYVLGHKIVFICMAKGKPRPHITWF-KDGVELYTHMYVNLHEWHYGTDR-IKSKI 60
           S      + G K    C  +  P P    +      L +            T+  + S +
Sbjct: 12  STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTL 71

Query: 61  EIDPAT-QMDAGIYECYADNMYNVDTRTFK 89
            I          IY C A N +  DT   +
Sbjct: 72  TISNIVRADFQTIYNCTAWNSFGSDTEIIR 101

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.002
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 6  DYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELYTHMYVNLHEWHYGTDRI----KS 58
               +G  I FI   K +    +P I WFK              +     +R       
Sbjct: 9  GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 68

Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
          +++I  A    AG Y C        D+ +F 
Sbjct: 69 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFD 99

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (72), Expect = 0.003
 Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 14/91 (15%)

Query: 11 LGHKIVFIC------MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
          +      +C        +    P + W+KD   L                  K ++ +  
Sbjct: 13 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--------KDRLIVMN 64

Query: 65 ATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
            +   G Y C+A   Y              
Sbjct: 65 VAEKHRGNYTCHASYTYLGKQYPITRVIEFI 95

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (71), Expect = 0.004
 Identities = 6/71 (8%), Positives = 18/71 (25%), Gaps = 11/71 (15%)

Query: 12 GHKIVFICMAKG---KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
          G ++   C  +G   + +  +   +   EL               +  +    +      
Sbjct: 19 GKQLTLRCQVEGGAPRAQLTVVLLRGEKEL--------KREPAVGEPAEVTTTVLVRRDH 70

Query: 69 DAGIYECYADN 79
              + C  + 
Sbjct: 71 HGAQFSCRTEL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.85
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.84
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.84
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.83
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.82
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.82
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.81
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.81
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.81
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.81
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.8
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.79
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.79
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.79
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.78
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.77
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.77
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.77
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.76
d2avga1	110	Cardiac myosin binding protein C, different domain	99.75
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.75
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.74
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.74
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.74
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.73
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.73
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.71
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.71
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.71
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.7
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.69
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.69
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.68
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.67
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.66
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.65
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.65
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.65
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.64
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.64
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.64
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.62
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.61
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.61
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.6
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.6
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.58
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.51
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.48
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.46
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.45
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.36
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.34
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.17
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.13
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.06
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.98
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.96
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.94
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.86
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.83
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.83
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.82
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.82
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.82
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.8
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.79
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.79
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.79
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.79
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.79
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.78
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.77
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.76
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.76
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.76
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.76
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.76
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.76
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.75
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.75
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.74
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.74
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.74
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.73
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.72
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.72
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.71
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.71
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.71
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.69
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.68
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.66
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.65
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.63
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.61
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.6
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.59
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.59
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.59
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.59
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.59
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.59
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.56
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.56
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.55
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.55
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.55
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.54
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.54
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.54
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.54
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.53
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.52
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.52
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.51
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.5
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.49
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.49
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.49
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.49
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.49
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.49
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.49
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.48
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.48
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.48
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.48
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.48
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.46
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.44
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.44
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.43
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.43
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.42
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.42
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.41
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.38
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.35
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.35
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.35
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.34
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.33
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.31
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.3
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.3
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.3
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.27
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.26
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.26
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.25
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.23
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.22
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.21
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.21
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.21
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.2
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.2
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.19
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.19
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.18
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.17
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.17
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.15
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.14
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.13
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.13
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.11
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.1
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.09
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.06
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.05
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.05
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.05
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.04
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.04
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.04
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.04
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.01
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	98.01
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.01
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.0
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.98
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.96
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.96
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.95
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.95
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.94
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.94
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.93
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.93
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.92
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.91
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.9
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.89
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.88
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.88
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.85
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.85
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.85
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.84
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.84
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.84
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.82
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.77
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.77
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.74
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.71
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.67
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.63
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.59
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.53
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.53
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.42
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.34
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.3
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.27
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.95
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.67
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	96.42
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	96.24
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.22
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.12
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.99
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.94
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	95.85
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	95.3
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.0
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	93.94
d2d9qb1	94	Granulocyte colony-stimulating factor (GC-SF) rece	86.72

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.85  E-value=1.3e-20  Score=87.05  Aligned_cols=82  Identities=24%  Similarity=0.506  Sum_probs=69.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...++.+..|+.+.|.|.+.|.|.|.+.|+++|..+....+....         ...|.|..+...|.|.|.|.+.|..|
T Consensus         7 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           7 VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---------GGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---------TTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee---------eeeEEEEeecccCCEEEEEEEEeCCC
Confidence            345788999999999999999999999999999998766554432         34799999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .......|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            98887777663

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.84  E-value=7.4e-20  Score=86.43  Aligned_cols=87  Identities=24%  Similarity=0.342  Sum_probs=72.4

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....+.....    ......+|.|..+...|.|.|.|.+.|..|.
T Consensus        15 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   90 (102)
T d1fhga_          15 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCKAVNSLGE   90 (102)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----CTTCEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEE----ecCceeeeEecCCCHHhCEEEEEEEEECCcE
Confidence            356788999999999999999999999999999998766554421    1222457999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.|..
T Consensus        91 ~~~~~~L~V~s  101 (102)
T d1fhga_          91 ATCTAELLVET  101 (102)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEE
Confidence            98888887653

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.84  E-value=3.9e-20  Score=85.47  Aligned_cols=80  Identities=19%  Similarity=0.272  Sum_probs=66.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +...+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ....         ...|.|..+...|.|.|.|.+.|..|
T Consensus         9 p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~-~~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4           9 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-ATVT---------DSGLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             CCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSS-EEEE---------TTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcccc-EEEe---------eeeEEECCCChhhCEEEEEEEEECCC
Confidence            3445678899999999999999999999999999886432 2221         23699999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .....+.|.|
T Consensus        79 ~~~~~~~l~V   88 (89)
T d1biha4          79 DKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9888887765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.2e-19  Score=82.61  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=70.5

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +.+.++.+.+|+.+.|.|.+.+.|.|.+.|++++..+.........   .........|.|..+...|.|.|.|.+.|..
T Consensus         1 g~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~---~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           1 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIP---VSEQHWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEE---EETTEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             CcCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeee---ecccCceeeEEECCCCcccCEEEEEEEEECC
Confidence            3578899999999999999999999999999999998765443322   1233345679999999999999999999999


Q ss_pred             Cce-eEEEEEEE
Q psy9150          82 NVD-TRTFKTDF   92 (97)
Q Consensus        82 g~~-~~~~~~~~   92 (97)
                      |.. +..+.|.|
T Consensus        78 G~~~S~~~~l~V   89 (91)
T d1rhfa1          78 ETEISQPVWLTV   89 (91)
T ss_dssp             TCEECCCEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            975 45666655

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-19  Score=85.68  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....+..+..   .  ....+|.|..+...|.|.|.|.+.|..|
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~---~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN---S--ENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE---C--SSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEE---e--cceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            3457789999999999999999999999999999887666554421   1  1245799999999999999999999999


Q ss_pred             ceeEEEEEEEEEe
Q psy9150          83 VDTRTFKTDFSIT   95 (97)
Q Consensus        83 ~~~~~~~~~~~~~   95 (97)
                      .....+.|.|...
T Consensus        81 ~~~~~~~l~V~~~   93 (101)
T d2cqva1          81 SRQAQVNLTVVDK   93 (101)
T ss_dssp             EEECCEEEEEECS
T ss_pred             EEEEEEEEEEEec
Confidence            9988888877654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.82  E-value=1e-18  Score=81.93  Aligned_cols=86  Identities=17%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..++.+..|+.+.|.|.+.|.|.|.+.|++++..+...........  ..  ....|.|..+...|.|.|.|.+.|..|.
T Consensus        11 ~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~c~a~N~~G~   86 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP--ED--NVCELVIRDVTGEDSASIMVKAINIAGE   86 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEec--cc--eEEEEEeccCccccCEEEEEEEEECCcE
Confidence            3577889999999999999999999999999999876654433211  11  1447999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ......|.|.
T Consensus        87 ~~~~~~L~V~   96 (98)
T d1g1ca_          87 TSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888877664

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.82  E-value=1.9e-19  Score=84.33  Aligned_cols=83  Identities=22%  Similarity=0.408  Sum_probs=66.1

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+............    ....+|.|..+...|.|.|.|.+.|..|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEc----CCcEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            456788999999999999999999999999998754432211100    0134799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy9150          86 RTFKTDF   92 (97)
Q Consensus        86 ~~~~~~~   92 (97)
                      ..+.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877665

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.81  E-value=2.6e-20  Score=86.37  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=70.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......+..     .....+|.|..+...|.|.|.|.+.|..|
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEE-----CSSEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeee-----ecceeEEeecCCCHHHCEEEEEEEEECCC
Confidence            4567889999999999999999999999999998887655444321     11256799999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .....+.|.|
T Consensus        80 ~~~~~~~l~V   89 (91)
T d1tnna_          80 KQEAEFTLTI   89 (91)
T ss_dssp             BCCEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            9888776654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=1.1e-19  Score=85.10  Aligned_cols=86  Identities=21%  Similarity=0.280  Sum_probs=70.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+.     .......|.|..+...|.|.|.|.+.|..|.
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   82 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR-----YNGNDYGLTINRVKGDDKGEYTVRAKNSYGT   82 (97)
T ss_dssp             CCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCC-----CSTTEEEEEESCCCSGGGSCEEEEEEETTEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEE-----ecCCeeEEEeCCCceecCEEEEEEEEECCCE
Confidence            45678899999999999999999999999999998765544321     1222557999999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy9150          84 DTRTFKTDFSI   94 (97)
Q Consensus        84 ~~~~~~~~~~~   94 (97)
                      ....+.|.|..
T Consensus        83 ~~~~~~l~V~~   93 (97)
T d1koaa1          83 KEEIVFLNVTR   93 (97)
T ss_dssp             EEEEECCEEEC
T ss_pred             EEEEEEEEEee
Confidence            88887777653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=8.8e-20  Score=84.87  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=70.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..++.+..|+.+.|.|.+.|.|.|.+.|++++..+...........     .....|.|..+...|.|.|.|.+.|..|
T Consensus         8 ~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   82 (93)
T d1wiua_           8 ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK-----SSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEE-----TTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeeccc-----ccceeeccccccccccEEEEEEEEECCC
Confidence            44678899999999999999999999999999988776554433211     1145799999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy9150          83 VDTRTFKTDF   92 (97)
Q Consensus        83 ~~~~~~~~~~   92 (97)
                      .....+.|.|
T Consensus        83 ~~~~~~~l~V   92 (93)
T d1wiua_          83 EDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9988877765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=3.9e-19  Score=82.34  Aligned_cols=79  Identities=25%  Similarity=0.359  Sum_probs=64.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++........           ....+|.|..+...|.|.|.|.+.|..|.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~-----------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL-----------SSEPLLHIQNVDFEDEGTYECEAENIKGR   80 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS-----------BSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee-----------eeeeEEEeCCCCccCCEEEEEEEEECCCE
Confidence            4678899999999999999999999999996644322110           11347999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1cs6a3          81 DTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888877764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=4.9e-19  Score=83.28  Aligned_cols=85  Identities=21%  Similarity=0.368  Sum_probs=64.9

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +.++..|+.+.|.|.+.|.|.|.+.|++++..+............ ..  ...+|.|..+...|.|.|.|.+.|..|...
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~-~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   90 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF-SD--DSSELTIRNVDKNDEAEYVCIAENKAGEQD   90 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEE-CT--TSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEe-ec--CceEEEeCCCCcccCEEEEEEEEECCCEEE
Confidence            445667999999999999999999999999988643321110000 11  135799999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy9150          86 RTFKTDFS   93 (97)
Q Consensus        86 ~~~~~~~~   93 (97)
                      ..+.|.|.
T Consensus        91 ~~~~l~V~   98 (100)
T d1qz1a3          91 ASIHLKVF   98 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88777654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=80.56  Aligned_cols=83  Identities=14%  Similarity=0.258  Sum_probs=65.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      |...+.+..|+.+.|.|.+.|.|.|.+.|++++..+.......        .....+|.|..+...|.|.|.|.+.|..|
T Consensus         7 P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   78 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTN--------EGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEE--------ETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             CCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeee--------ecCCcEEEEecccccccceEEEEEEeCCC
Confidence            4456677899999999999999999999998765543221111        11245899999999999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .....+.|.|.
T Consensus        79 ~~~~~~~v~V~   89 (90)
T d1vcaa2          79 KLEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99888877764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.7e-18  Score=80.27  Aligned_cols=84  Identities=24%  Similarity=0.425  Sum_probs=67.5

Q ss_pred             cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150          11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT   90 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~   90 (97)
                      .+....+.|.+.|.|.|.+.|++++..+.....................|.|..++..|.|.|.|.+.|..|.....+.|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            45566788999999999999999999998665554433333344456689999999999999999999999999988877


Q ss_pred             EEEE
Q psy9150          91 DFSI   94 (97)
Q Consensus        91 ~~~~   94 (97)
                      .+..
T Consensus        95 ~V~~   98 (103)
T d1wwbx_          95 HFMG   98 (103)
T ss_dssp             CCSC
T ss_pred             EEEe
Confidence            7644

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.79  E-value=1.6e-18  Score=81.08  Aligned_cols=86  Identities=17%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+..|+.+.|.|.+.|.|.|.+.|++++..+..........   .......+|.|..+...|.|.|.|.+.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES---CSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeee---eeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            357888999999999999999999999999999886543322211   11122347999999999999999999999998


Q ss_pred             ee-EEEEEEE
Q psy9150          84 DT-RTFKTDF   92 (97)
Q Consensus        84 ~~-~~~~~~~   92 (97)
                      .. ..+.|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            64 4565655

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.78  E-value=1.1e-17  Score=79.53  Aligned_cols=90  Identities=23%  Similarity=0.325  Sum_probs=64.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc----c--eeeEE--EEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH----M--YVNLH--EWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~----~--~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      .+.++.+..|+.+.|.|.+.|.|.|.+.|++++......    .  .....  ............|.|..+...|.|.|.
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   90 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT   90 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEE
Confidence            457889999999999999999999999999865432111    0  00000  001112233568999999999999999


Q ss_pred             EEEEcCCCceeEEEEEEE
Q psy9150          75 CYADNMYNVDTRTFKTDF   92 (97)
Q Consensus        75 c~~~~~~g~~~~~~~~~~   92 (97)
                      |.+.|..|.......|.|
T Consensus        91 C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          91 CLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            999999999988887765

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.4e-18  Score=80.89  Aligned_cols=91  Identities=19%  Similarity=0.261  Sum_probs=65.8

Q ss_pred             ceeeEEEcCCeEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .....+..|+.+.|.|.+.|.| .|.+.|++++..+.....................|.|..+..+|.|.|.|.+.|..|
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   89 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN   89 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCC
Confidence            4567899999999999999998 589999997765432211111111112233355799999999999999999999999


Q ss_pred             cee-EEEEEEEEE
Q psy9150          83 VDT-RTFKTDFSI   94 (97)
Q Consensus        83 ~~~-~~~~~~~~~   94 (97)
                      ... ..+.|.|..
T Consensus        90 ~~~s~~~~l~V~e  102 (104)
T d2aw2a1          90 LIESHSTTLYVTD  102 (104)
T ss_dssp             EEECCCEEEEEEC
T ss_pred             eEEEEEEEEEEEE
Confidence            754 567777654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.1e-19  Score=80.00  Aligned_cols=75  Identities=8%  Similarity=0.062  Sum_probs=62.8

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +..+.+|+.+.|.|.+.|.|.|.+.|++++..+...               ...|.|..+..+|.|.|.|.+.|..|...
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~---------------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~   72 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWTCTVLQNQKKVE   72 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE---------------SSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee---------------eeeeeeeecccccccEEEEEEEeCCCEEE
Confidence            456889999999999999999999999976543211               23688999999999999999999999988


Q ss_pred             EEEEEEEEEe
Q psy9150          86 RTFKTDFSIT   95 (97)
Q Consensus        86 ~~~~~~~~~~   95 (97)
                      ..+.|.|...
T Consensus        73 ~~~~v~V~~~   82 (84)
T d2nxyb2          73 FKIDIVVLAF   82 (84)
T ss_dssp             EEEEECEECC
T ss_pred             EEEEEEEEec
Confidence            8887777643

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4.4e-18  Score=78.42  Aligned_cols=80  Identities=23%  Similarity=0.374  Sum_probs=64.5

Q ss_pred             CceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+..+.+.+|+.+.|.|.+. +.|.|.+.|++++..+.......          ....|.|..+...|.|.|.|.+.|..
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~N~~   77 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD----------FNGILTIRNVQPSDAGTYVCTGSNMF   77 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE----------ETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe----------eceEEEEecCCcccCEEEEEEEEECC
Confidence            34577889999999999996 67889999999877665432211          13479999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |.....+.|.|
T Consensus        78 G~~~~~~~l~V   88 (89)
T d1gl4b_          78 AMDQGTATLHV   88 (89)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99888777765

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.5e-18  Score=80.48  Aligned_cols=85  Identities=16%  Similarity=0.268  Sum_probs=67.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..........   ..   ..+|.|..+...|.|.|.|.+.|..+
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~---~~---~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV---LS---NNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE---CT---TSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeee---ee---eeeEEECCCCHHhCEEEEEEEEECcC
Confidence            4567889999999999999999999999999999887654332211   11   23699999999999999999999888


Q ss_pred             ceeEEEEEEEE
Q psy9150          83 VDTRTFKTDFS   93 (97)
Q Consensus        83 ~~~~~~~~~~~   93 (97)
                      .......+.|.
T Consensus        81 ~~~~~~~i~Vi   91 (92)
T d1epfa2          81 GEINFKDIQVI   91 (92)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            77666656554

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-16  Score=75.57  Aligned_cols=90  Identities=21%  Similarity=0.326  Sum_probs=67.7

Q ss_pred             ceeeEEEcCCeEEEEEEecccC---CCeeEEEeCCEEcccc---ceeeEEE-EEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELYTH---MYVNLHE-WHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +.++.+..|+.+.|.|.+.|.|   .|.+.|++++......   ....... ...........|.|..++..|.|.|.|.
T Consensus        11 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (110)
T d2avga1          11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCE   90 (110)
T ss_dssp             CCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEE
T ss_pred             CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEE
Confidence            4578899999999999999988   5789999976433211   1122111 1112333466899999999999999999


Q ss_pred             EEcCCCceeEEEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~~~   93 (97)
                      +.|..|...+.+.|.|.
T Consensus        91 a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          91 VSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCeEEEEEEEEEE
Confidence            99999999999988875

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-17  Score=76.72  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +...+.+..|+++.|.|.+ .+.|.|.+.|++.+..+....   .       ....+.|.|.++...|.|.|.|.+.|..
T Consensus         9 p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~---~-------~~~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1           9 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ---S-------DTGRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             CCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEE---E-------ESSEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeee---c-------cCceeeEEcCccChhhCCcEEEEEEeCC
Confidence            4456788899999999987 478899999998766553211   0       0114689999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |...+.+.|.|
T Consensus        79 g~~~~s~~l~V   89 (90)
T d1gsma1          79 RTFQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            98888877765

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.6e-19  Score=80.37  Aligned_cols=72  Identities=22%  Similarity=0.258  Sum_probs=59.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....                  .+..++..|.|.|.|.+.|..|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~------------------~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT------------------SCEECCGGGCEEEEEEEEETTEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee------------------eeeccccCCCCEEEEEEEcCCCE
Confidence            467889999999999999999999999999887654322                  12346778999999999999998


Q ss_pred             eeEEEEEEEE
Q psy9150          84 DTRTFKTDFS   93 (97)
Q Consensus        84 ~~~~~~~~~~   93 (97)
                      ....+.|.|.
T Consensus        73 ~~~~~~l~V~   82 (84)
T d2oz4a3          73 VTREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8887777664

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.4e-17  Score=78.42  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCc---eEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTD---RIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +...+.+.+|+.+.|.|.+.+.|.|.+.|++++...................   ....+|.|.++..+|.|.|.|.+.|
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            5567889999999999999999999999998432211100000000000000   1134799999999999999999999


Q ss_pred             CCCceeEEEEEEEEEe
Q psy9150          80 MYNVDTRTFKTDFSIT   95 (97)
Q Consensus        80 ~~g~~~~~~~~~~~~~   95 (97)
                      ..|.....+.+.+.+|
T Consensus        87 ~~g~~~~~~~v~v~Vl  102 (102)
T d1f97a1          87 EGGQNYGEVSIHLTVL  102 (102)
T ss_dssp             TTSSSEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEC
Confidence            9999998888888775

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.7e-17  Score=75.13  Aligned_cols=75  Identities=19%  Similarity=0.343  Sum_probs=57.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +.+..+..|+.+.|.|.+.|.|.| .+.|+++|..+.....              ..+.+.....+|.|.|.|.+.|..|
T Consensus         8 P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~--------------~~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2           8 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------------SPSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE--------------SSEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC--------------cceEEecCCccccEEEEEEEEcCCC
Confidence            457788999999999999999988 8999999988764321              1234445556799999999999999


Q ss_pred             ce-eEEEEEEE
Q psy9150          83 VD-TRTFKTDF   92 (97)
Q Consensus        83 ~~-~~~~~~~~   92 (97)
                      .. +....|.+
T Consensus        74 ~~~S~~~~v~V   84 (85)
T d1rhfa2          74 LASSRTATVHL   84 (85)
T ss_dssp             EEECCCEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            64 34555543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.9e-16  Score=75.08  Aligned_cols=91  Identities=22%  Similarity=0.282  Sum_probs=67.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccC---CCeeEEEeCCEEcc---ccceeeEEEE-EecCceEEEEEEEccCCCCCCEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELY---THMYVNLHEW-HYGTDRIKSKIEIDPATQMDAGIYEC   75 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~---~p~i~w~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c   75 (97)
                      .+.++.+..|+.+.|.|.+.|.|   .|.+.|++++....   .......... ..........|.|..+...|.|.|.|
T Consensus         6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T d2dava1           6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC   85 (113)
T ss_dssp             CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred             CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence            45678999999999999999988   57999999764321   1112222111 11223345679999999999999999


Q ss_pred             EEEcCCCceeEEEEEEEE
Q psy9150          76 YADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        76 ~~~~~~g~~~~~~~~~~~   93 (97)
                      .+.|..|...+.+.|.|.
T Consensus        86 ~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          86 EVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             EEECSSCEEEECCEEEEE
T ss_pred             EEEeCCCEEEEEEEEEEE
Confidence            999999999888877764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8e-19  Score=83.12  Aligned_cols=93  Identities=17%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCce---EEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDR---IKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ++.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.................   ...+|.|.++..+|.|.|.|.+.|
T Consensus        10 ~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (105)
T d1nbqa1          10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE   89 (105)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred             CCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEE
Confidence            45677899999999999999999999999986543322111110000000010   124799999999999999999999


Q ss_pred             CCCceeEEEEEEEEEe
Q psy9150          80 MYNVDTRTFKTDFSIT   95 (97)
Q Consensus        80 ~~g~~~~~~~~~~~~~   95 (97)
                      ..|.......+.+.++
T Consensus        90 ~~G~~~~~~~v~v~Vl  105 (105)
T d1nbqa1          90 EGGNSYGEVKVKLIVL  105 (105)
T ss_dssp             TTSSCEECCEEECCEE
T ss_pred             CCCCEEEEEEEEEEEC
Confidence            9999988777777654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=80.82  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-----------------------------eeeEEEEEecCc
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-----------------------------YVNLHEWHYGTD   54 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-----------------------------~~~~~~~~~~~~   54 (97)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....                             +..+.     ..
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~   90 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE-----TT   90 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE-----EE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEE-----EC
Confidence            357789999999999999999999999998765443211                             00100     01


Q ss_pred             eEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          55 RIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        55 ~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ....+|.|..+...|.|.|.|.+.|..|.....+.|.|.
T Consensus        91 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          91 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            124579999999999999999999999999888877664

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5.6e-16  Score=72.27  Aligned_cols=86  Identities=24%  Similarity=0.403  Sum_probs=62.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-CeeEEEe-CCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFK-DGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+... .+......    .....+|.|..+...|.|.|.|.+.|
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N   81 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN----DDDSSTLTIYNANIDDAGIYKCVVTA   81 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEee----cCcceEEEcccCchhhceEEEEEEEe
Confidence            345678899999999999999874 7899998 55554432 22322211    11246799999999999999999999


Q ss_pred             CCCce-eEEEEEEE
Q psy9150          80 MYNVD-TRTFKTDF   92 (97)
Q Consensus        80 ~~g~~-~~~~~~~~   92 (97)
                      ..|.. ...+.|.|
T Consensus        82 ~~G~~~~~tv~l~V   95 (97)
T d1epfa1          82 EDGTQSEATVNVKI   95 (97)
T ss_dssp             TTTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            99875 34555554

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1e-16  Score=76.07  Aligned_cols=88  Identities=14%  Similarity=0.271  Sum_probs=63.8

Q ss_pred             eeEEEcCCeEE---EEEEecccCCCeeEEEeCCEEccccceeeEEEEEe--cCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           6 DYEYVLGHKIV---FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY--GTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         6 ~~~~~~g~~~~---l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ++.+..|....   +.|.+.|.|.|.+.|++++..+.............  ........|.|..+...|.|.|.|.+.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            34444454444   45588999999999999999987655433221111  12234567999999999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy9150          81 YNVDTRTFKTDFS   93 (97)
Q Consensus        81 ~g~~~~~~~~~~~   93 (97)
                      .|...+.+.|.+.
T Consensus        86 ~G~~~~~i~v~v~   98 (107)
T d1he7a_          86 FGQASASIMAAFM   98 (107)
T ss_dssp             TEEEEEEEEECCC
T ss_pred             CCEEEEEEEEEEE
Confidence            9999888877653

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.9e-16  Score=73.15  Aligned_cols=79  Identities=16%  Similarity=0.351  Sum_probs=61.5

Q ss_pred             eEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        14 ~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ..-+.|.+.|.|.|.+.|++++..+......... ...........|.|..+...|.|.|+|.+.|..|.....+.|.+.
T Consensus        19 ~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          19 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVE-YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             EEEEEEEEECSSCCEEEEEETTEECCCSSSEEEE-EEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEEEEEEeCCCeEEEEeCccccCCCcceeee-EEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEE
Confidence            3446778899999999999999998765443322 122334446689999999999999999999999999888877653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-16  Score=74.81  Aligned_cols=87  Identities=17%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEE-EEe------cCceEEEEEEEccCCCCCCE-EEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHE-WHY------GTDRIKSKIEIDPATQMDAG-IYECY   76 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~l~i~~~~~~~~g-~y~c~   76 (97)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|+++|..+.......... ...      ......+.|.|..++..|.| .|.|.
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~   89 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF   89 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred             CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence            45667789999999999999999999999998876443221111 000      11123568999999999999 59999


Q ss_pred             EEcCCCceeEEEEEE
Q psy9150          77 ADNMYNVDTRTFKTD   91 (97)
Q Consensus        77 ~~~~~g~~~~~~~~~   91 (97)
                      +.|..|.....+.|.
T Consensus        90 A~N~~G~~~~~i~L~  104 (107)
T d1iray3          90 AKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EECSSCEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEE
Confidence            999999998888765

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-17  Score=76.40  Aligned_cols=84  Identities=15%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             CCCceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         1 ~~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      |++.....+.+|+.+.|.|.+.+ +.|.+.|++++..+..... ...     .   ...+|.|.++...|.|.|.|.+.|
T Consensus         1 k~~~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~-----~---~~~~L~I~~v~~~DsG~Y~C~A~n   71 (92)
T d1olza1           1 KGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGL-----M---GRKNLLIFNLSEGDSGVYQCLSEE   71 (92)
T ss_dssp             CCEEEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCC-----T---TTTCEEECSCCGGGCEEEEEEEEE
T ss_pred             CCChhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeec-----c---eeeEEEECCCCHHHCcEEEEEEEE
Confidence            34566788999999999999988 7789999998887754321 111     1   123699999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy9150          80 MYNVDTRTFKTDFS   93 (97)
Q Consensus        80 ~~g~~~~~~~~~~~   93 (97)
                      ..+.......+...
T Consensus        72 ~~g~~~~~~~l~~~   85 (92)
T d1olza1          72 RVKNKTVFQVVAKH   85 (92)
T ss_dssp             ECSSSEEEEEEEEE
T ss_pred             cCCCEEEEEEEEEE
Confidence            98876654444433

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-18  Score=80.78  Aligned_cols=81  Identities=11%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCE-EEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~c~~~~~~g~   83 (97)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|++++..+......       ........|.|..+...|.| .|.|.+.|..|.
T Consensus        10 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~   82 (92)
T d2ifga1          10 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR   82 (92)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEE
T ss_pred             CCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee-------eeeccceeEEEccccccccceEEEEEEEcCCCE
Confidence            4567789999999999999999999999988665432111       11222557999999999998 699999999999


Q ss_pred             eeEEEEEEE
Q psy9150          84 DTRTFKTDF   92 (97)
Q Consensus        84 ~~~~~~~~~   92 (97)
                      ....+.|.|
T Consensus        83 ~~~s~~l~V   91 (92)
T d2ifga1          83 AEVSVQVNV   91 (92)
T ss_dssp             CCEEECCCC
T ss_pred             EEEEEEEEE
Confidence            888776654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.68  E-value=9.9e-17  Score=74.89  Aligned_cols=81  Identities=22%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             eeeEEEcC---CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLG---HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g---~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+..+..|   +.+.|.|.+.|.|.|.+.|++++..+...........  .    ...+.+..+...|.|.|.|.+.|..
T Consensus        12 ~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~--~----~~~l~i~~~~~~d~G~Y~C~a~N~~   85 (97)
T d1cs6a1          12 AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--A----GDLVISNPVKAKDAGSYQCVATNAR   85 (97)
T ss_dssp             CCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE--T----TEEEEESCCHHHHCEEEEEEEEETT
T ss_pred             CCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee--e----eeEEEEecccccCCEEEEEEEEECC
Confidence            45556555   6899999999999999999999998865443322111  1    2467888888999999999999999


Q ss_pred             Cce-eEEEEEE
Q psy9150          82 NVD-TRTFKTD   91 (97)
Q Consensus        82 g~~-~~~~~~~   91 (97)
                      |.. +....|.
T Consensus        86 G~~~S~~a~L~   96 (97)
T d1cs6a1          86 GTVVSREASLR   96 (97)
T ss_dssp             EEEECCCEEEE
T ss_pred             CEEEEEEEEEe
Confidence            986 3456554

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.7e-16  Score=75.57  Aligned_cols=86  Identities=28%  Similarity=0.532  Sum_probs=59.1

Q ss_pred             eEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEe---cCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           7 YEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHY---GTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+..|+.+.|.|.+. |.|.+.+.|++++..+.............   ........|.|.+++..|.|.|.|.+.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3577899999999984 89999999999998775432211100000   0001133688999999999999999999999


Q ss_pred             ceeE--EEEEEE
Q psy9150          83 VDTR--TFKTDF   92 (97)
Q Consensus        83 ~~~~--~~~~~~   92 (97)
                      ....  .+.+.+
T Consensus        92 ~~~~s~~v~l~V  103 (110)
T d1f97a2          92 TAMRSEAAHMDA  103 (110)
T ss_dssp             CCEECCCEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            8765  444444

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=8.7e-17  Score=74.66  Aligned_cols=77  Identities=18%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+.++.+.+|+.+.|.|.+.|.|.| .+.|+++|..+.........    ...  ..+|.|..+..+|.|.|.|.+.|..
T Consensus         8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~----~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----RKD--EGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE----CTT--SCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee----ccc--ceEEEEeccChhcCeEEEEEEEeCC
Confidence            3567889999999999999998866 69999999888654322211    111  3469999999999999999999999


Q ss_pred             Ccee
Q psy9150          82 NVDT   85 (97)
Q Consensus        82 g~~~   85 (97)
                      |...
T Consensus        82 G~~~   85 (94)
T d1biha1          82 GVAS   85 (94)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9754

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-14  Score=68.20  Aligned_cols=84  Identities=14%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEcc----cc--ceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELY----TH--MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYEC   75 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c   75 (97)
                      .....+.+|+.+.|.|.+.|.|.| .+.|++++....    ..  .++...     .......|.|..+. ..|.|.|.|
T Consensus         9 ~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~~D~G~Y~C   83 (101)
T d3b5ha1           9 KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS-----SSQGRSELHIENLNMEADPGQYRC   83 (101)
T ss_dssp             CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEE-----EETTEEEEEECSCCTTTSSEEEEE
T ss_pred             CCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEE-----eCCCEEEEEEeccccccCCEEEEE
Confidence            356778899999999999999987 699998653221    11  112221     11124579999997 578999999


Q ss_pred             EEEcCCCceeEEEEEEE
Q psy9150          76 YADNMYNVDTRTFKTDF   92 (97)
Q Consensus        76 ~~~~~~g~~~~~~~~~~   92 (97)
                      .+.|..|.....+.|.|
T Consensus        84 ~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          84 NGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999988887765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=4e-17  Score=77.27  Aligned_cols=81  Identities=16%  Similarity=0.266  Sum_probs=61.5

Q ss_pred             CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ++..+.+.+|+.+.|.|.+ .+.|.|.+.|++++..+......+...  ...   ..+|.|..+...|.|.|.|.+.|..
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~--~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~   84 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV--SQT---TGNLYIAKTEASDLGNYSCFATSHI   84 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE--CTT---TCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeee--ecC---CCEEeecccccccCcEEEEEEEECC
Confidence            4567899999999999997 788999999999887654322211110  011   2369999999999999999999998


Q ss_pred             CceeEEE
Q psy9150          82 NVDTRTF   88 (97)
Q Consensus        82 g~~~~~~   88 (97)
                      |.....+
T Consensus        85 g~~~~~v   91 (105)
T d1cs6a2          85 DFITKSV   91 (105)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            8876553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-15  Score=71.22  Aligned_cols=84  Identities=18%  Similarity=0.259  Sum_probs=62.4

Q ss_pred             ceeeEEEcCCeEEEEE------EecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFIC------MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c------~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      .....+..|....+.|      .+.+.|.|.+.|++++..+.........    .    ...|.|..+...|.|.|+|.+
T Consensus         6 ~~~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~----~----~~~L~I~~v~~~D~G~Y~C~a   77 (103)
T d1iray2           6 IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG----V----KDRLIVMNVAEKHRGNYTCHA   77 (103)
T ss_dssp             CEEEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE----E----TTEEEESSCCGGGCEEEEEEE
T ss_pred             cEEEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe----c----CCEEEEcccccccCcEEEEEE
Confidence            3466788999999999      4578899999999999998754322211    1    237999999999999999999


Q ss_pred             EcCCCceeE--EEEEEEEEe
Q psy9150          78 DNMYNVDTR--TFKTDFSIT   95 (97)
Q Consensus        78 ~~~~g~~~~--~~~~~~~~~   95 (97)
                      .|..+....  ...+.+.++
T Consensus        78 ~n~~~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          78 SYTYLGKQYPITRVIEFITL   97 (103)
T ss_dssp             EEEETTEEEEEEEEEEEEEE
T ss_pred             EECcCCEEEEEEEEEEEEEC
Confidence            998775433  334444443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-15  Score=70.28  Aligned_cols=85  Identities=18%  Similarity=0.155  Sum_probs=58.9

Q ss_pred             ceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..++.+..|+.+.|.|.+.|.|.|.+.|++  ++..........    .........+|.|..+..+|.|.|+|.+.|..
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   83 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK----VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG   83 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEE----EEETTEEEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCcee----EEEeecCceEEEECCCCHHHCeEEEEEEEeCC
Confidence            357889999999999999999988766543  222221111111    11233335679999999999999999999999


Q ss_pred             CceeEE-EEEEE
Q psy9150          82 NVDTRT-FKTDF   92 (97)
Q Consensus        82 g~~~~~-~~~~~   92 (97)
                      |..... ..|.|
T Consensus        84 G~~~s~~a~L~V   95 (96)
T d2c9aa1          84 GVGISNYAELVV   95 (96)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CeEEEEEEEEEE
Confidence            987544 45543

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3e-16  Score=73.09  Aligned_cols=80  Identities=23%  Similarity=0.389  Sum_probs=62.4

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+.+|+.+.|.|.+.+ +.+.+.|++++..+..........    .   ..+|.|..+...|.|.|.|.+.|..|..
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~----~---~~~L~I~~v~~~d~G~Y~C~a~N~~g~~   82 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ----N---NSILRIDPIKREDAGEYQCEISNPVSVR   82 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET----T---TTEEEECSCCGGGCEEEEEEEESSSCCE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC----C---ceEEEEeccchhhceEEEEEEEeCCCCe
Confidence            3567889999999999866 568899999999987655444321    1   3479999999999999999999998876


Q ss_pred             e-EEEEEEE
Q psy9150          85 T-RTFKTDF   92 (97)
Q Consensus        85 ~-~~~~~~~   92 (97)
                      . ..+.|.|
T Consensus        83 ~S~~~~L~V   91 (96)
T d1l6za2          83 RSNSIKLDI   91 (96)
T ss_dssp             ECCCCEEEE
T ss_pred             EEEeEEEEE
Confidence            4 4555554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-15  Score=69.03  Aligned_cols=74  Identities=20%  Similarity=0.299  Sum_probs=56.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +..++.+..|+.+.|.|.+. .|.|.+.|++++..+..........   .......+|.|.++..+|.|.|.|.+.|.
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRI---RVEGKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEE---EEETTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEE---EEeCCccEEEECccccccCEEEEEEEecc
Confidence            56788999999999999984 5888999999999886544322111   11112457999999999999999998763

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.64  E-value=1.3e-15  Score=70.00  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             eeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+.....             ...+.|..+..+|.|.|.|.+.|..+..
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~-------------~~~l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------------NSDFHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE-------------CCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceecc-------------ccccEECccceeccceEEEEEEeCCCCe
Confidence            34578999999999986 456668999999987643210             2368899999999999999999988764


Q ss_pred             e-EEEEEEE
Q psy9150          85 T-RTFKTDF   92 (97)
Q Consensus        85 ~-~~~~~~~   92 (97)
                      . ..+.|.|
T Consensus        78 ~S~~v~itV   86 (89)
T d1fnla2          78 SSETVNITI   86 (89)
T ss_dssp             ECCCEEEEE
T ss_pred             EEeeEEEEE
Confidence            3 4555544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.64  E-value=1.3e-15  Score=69.84  Aligned_cols=74  Identities=20%  Similarity=0.378  Sum_probs=56.9

Q ss_pred             eeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+. |.+.+.|++++..+.....             ...|.|..+..+|+|.|.|.+.|..|..
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~-------------~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS-------------DPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS-------------CCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccccc-------------ccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            3457899999999999654 5668999999987643211             2468999999999999999999998865


Q ss_pred             e-EEEEEEE
Q psy9150          85 T-RTFKTDF   92 (97)
Q Consensus        85 ~-~~~~~~~   92 (97)
                      . ..+.|.|
T Consensus        76 ~S~~v~l~V   84 (88)
T d2fcba2          76 SSKPVTITV   84 (88)
T ss_dssp             ECCCEEEEE
T ss_pred             EeeeEEEEE
Confidence            3 4455544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-15  Score=70.32  Aligned_cols=72  Identities=13%  Similarity=0.211  Sum_probs=55.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      +...+.+.+|+.+.|.|.+.+.++ +.+.|++++..+.........        ...+|.|..++.+|.|.|.|.+.|..
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--------MGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE--------ESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec--------CCCEEEECCCChhcCEEEEEEECCcc
Confidence            345778889999999999988765 589999998877654432211        13479999999999999999987654


Q ss_pred             C
Q psy9150          82 N   82 (97)
Q Consensus        82 g   82 (97)
                      +
T Consensus        84 ~   84 (93)
T d1n26a1          84 A   84 (93)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.8e-15  Score=67.79  Aligned_cols=69  Identities=20%  Similarity=0.359  Sum_probs=53.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      .+.+..|+.+.|.|.+. .|.|.+.|+++|..+.... ...+..     ......|.|..+...|.|.|.|.+.|.
T Consensus        15 ~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES-----IGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEE-----ETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             CEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeec-----cCCeEEeecCCCCceecEEEEEEEeeE
Confidence            46788999999999985 4889999999999886543 233321     112457999999999999999998664

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.5e-17  Score=76.87  Aligned_cols=89  Identities=25%  Similarity=0.437  Sum_probs=63.7

Q ss_pred             eeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEE--EecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEW--HYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...+..|+.+.|.|.+ .|.|.|.+.|++++..+...........  ..........|.|..+...|.|.|.|.+.|..|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            4567889999999998 5899999999999887754432211000  000111134688999999999999999999999


Q ss_pred             ceeEEEEEEEEE
Q psy9150          83 VDTRTFKTDFSI   94 (97)
Q Consensus        83 ~~~~~~~~~~~~   94 (97)
                      ...+...+.+.+
T Consensus        91 ~~~~s~~v~v~v  102 (104)
T d1nbqa2          91 TPMTSNAVRMEA  102 (104)
T ss_dssp             CCEECCCBCCEE
T ss_pred             ceEEEEEEEEEE
Confidence            887665555443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.60  E-value=1.8e-16  Score=72.96  Aligned_cols=75  Identities=17%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..++.+.+|+.+.|.|.+ +.|.|.+.|+++|..+....+..+...     .....|.|..+...|.|.|.|.+.|..+
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIED-----GKKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEEC-----SSCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEee-----ceeEEEEEcCCChhcCEEEEEEECceEE
Confidence            5678999999999999998 568899999999999877666555321     1245799999999999999999877544


Q ss_pred             c
Q psy9150          83 V   83 (97)
Q Consensus        83 ~   83 (97)
                      .
T Consensus        81 s   81 (89)
T d1tiua_          81 A   81 (89)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=71.31  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=64.0

Q ss_pred             ceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           4 HFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      +..+.+..|+.+.|.|.+. +.|.+.+.|++++..+....  ..++..       ...+|.|..++..|.|.|.|.+.|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-------HKEKLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE-------ETTEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec-------cCCEEEeccceecCCEEEEEEEECC
Confidence            3456788899999999884 67899999999876543221  111111       1347999999999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy9150          81 YNVDTRTFKTDFS   93 (97)
Q Consensus        81 ~g~~~~~~~~~~~   93 (97)
                      .|.....+.|.|.
T Consensus        82 ~g~~~~~~~L~V~   94 (101)
T d1iray1          82 SYCLRIKISAKFV   94 (101)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEE
Confidence            9999888877765

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.3e-15  Score=67.25  Aligned_cols=75  Identities=19%  Similarity=0.230  Sum_probs=57.6

Q ss_pred             eeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+. +...+.|+++|..+.....             ...|.|..++.+|+|.|.|.+.|..+..
T Consensus         9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~-------------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~   75 (89)
T d1f2qa2           9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------------NHNISITNATVEDSGTYYCTGKVWQLDY   75 (89)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------------SSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc-------------cceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence            3457899999999999665 4557999999988754321             2368899999999999999999987764


Q ss_pred             -eEEEEEEEE
Q psy9150          85 -TRTFKTDFS   93 (97)
Q Consensus        85 -~~~~~~~~~   93 (97)
                       +..+.|.|.
T Consensus        76 ~S~~v~i~V~   85 (89)
T d1f2qa2          76 ESEPLNITVI   85 (89)
T ss_dssp             ECCCEEEEEE
T ss_pred             EeeeEEEEEE
Confidence             345555554

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.51  E-value=1.5e-13  Score=62.33  Aligned_cols=66  Identities=23%  Similarity=0.358  Sum_probs=52.3

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ....+.+|+.+.|.|.+.+.+.+. +.|++++..+...               ..+|.|..+...|.|.|.|.+.+...+
T Consensus        13 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------------ASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS---------------CSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             CCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec---------------ceeeEecCCcccCCEEEEEEccCCCcc
Confidence            356788999999999999988886 5567788765432               236899999999999999998876654


Q ss_pred             ee
Q psy9150          84 DT   85 (97)
Q Consensus        84 ~~   85 (97)
                      ..
T Consensus        78 ~~   79 (84)
T d1fnla1          78 DP   79 (84)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.8e-15  Score=72.47  Aligned_cols=86  Identities=20%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             eeEEEcCCeEEEEEEeccc-CCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCC-CEEEEEEEEcCC
Q psy9150           6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADNMY   81 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~~~   81 (97)
                      .+.+.+|+.+.|.|.+.+. |.+.+.|++++..+....  ++.... ..........|.|..+...| .|.|.|.+.|..
T Consensus        15 ~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~-~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~   93 (115)
T d2crya1          15 TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET-ISTEEGVISTLTISNIVRADFQTIYNCTAWNSF   93 (115)
T ss_dssp             CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEE-EEETTEEEEEEECTTCCHHHHHSCEEEEEECSS
T ss_pred             CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeee-eccccCcEEEEEEeccchhcCCeEEEEEEEECC
Confidence            4556789999999999885 455799999888776433  222221 11223334579999999998 699999999999


Q ss_pred             CceeEEEEEEE
Q psy9150          82 NVDTRTFKTDF   92 (97)
Q Consensus        82 g~~~~~~~~~~   92 (97)
                      |...+.+.|.+
T Consensus        94 G~~~~~~~L~V  104 (115)
T d2crya1          94 GSDTEIIRLKE  104 (115)
T ss_dssp             CEEEEEECCCC
T ss_pred             CeEEEEEEEEE
Confidence            99988887765

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=62.97  Aligned_cols=64  Identities=22%  Similarity=0.359  Sum_probs=51.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      ...+.+|+.+.|.|.+.+.+.+ .+.|+++|..+....               ..|.|..+..+|.|.|.|.+.|..++.
T Consensus        13 ~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~---------------~~l~i~~v~~~dsG~Y~C~a~ns~~S~   77 (85)
T d2fcba1          13 WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT---------------QPSYRFKANNNDSGEYTCQTGQTSLSD   77 (85)
T ss_dssp             CSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC---------------SSEEEEECCGGGCEEEEEECTTSBCCC
T ss_pred             CeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc---------------cceEEeeccccCCcEEEEECCCCcccc
Confidence            4678899999999999888876 488899998875432               357788899999999999998765544

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-13  Score=63.52  Aligned_cols=78  Identities=10%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             eeEEEcCCeEEEEEEecc-cCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           6 DYEYVLGHKIVFICMAKG-KPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~-~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...+..|+.+.|.|.+.| .|.|  .+.|++++..+.....        ......++|.|...+.+|.|.|+|.+.|..|
T Consensus        13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~--------~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g   84 (103)
T d1iama1          13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--------VGEPAEVTTTVLVRRDHHGAQFSCRTELDLR   84 (103)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------CTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             CceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc--------ccccceEEEEEeeehhHCCCEEEEEEEeCCC
Confidence            445778999999999976 5555  4779999987753221        2233456899999999999999999999998


Q ss_pred             ceeEEEEEE
Q psy9150          83 VDTRTFKTD   91 (97)
Q Consensus        83 ~~~~~~~~~   91 (97)
                      .......+.
T Consensus        85 ~~~~~~~~~   93 (103)
T d1iama1          85 PQGLELFEN   93 (103)
T ss_dssp             GGTSCEEEE
T ss_pred             CccCeEeee
Confidence            765544433

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.8e-14  Score=66.30  Aligned_cols=80  Identities=8%  Similarity=0.069  Sum_probs=55.4

Q ss_pred             eeEEEcCCeEEEEEEecc-c--CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150           6 DYEYVLGHKIVFICMAKG-K--PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~-~--~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ...+..|+.+.|.|.+.| .  |.+.+.|++++..+........   ........+.|.+...+.+|.|.|+|.|.|..+
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~---~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA---APAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS---TTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE---eecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            446778999999999976 3  3447999999988754321111   001223355678888888888999999999887


Q ss_pred             ceeEEE
Q psy9150          83 VDTRTF   88 (97)
Q Consensus        83 ~~~~~~   88 (97)
                      .....+
T Consensus        88 ~~~~~~   93 (106)
T d1zxqa1          88 SRGGNI   93 (106)
T ss_dssp             GGTCCE
T ss_pred             CCCCee
Confidence            654433

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.4e-13  Score=60.85  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=48.7

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ....+.+|+.+.|.|.+.+.|.+. +.|++++..+...               ...|.|..++.+|.|.|.|.+.|..+.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~~v~~~d~G~Y~C~a~~s~~S   73 (82)
T d1f2qa1           9 PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------------NSSLNIVNAKFEDSGEYKCQHQQVNES   73 (82)
T ss_dssp             SCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC---------------SSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc---------------cceeEECCCChhhCCcEEEEecCCCCc
Confidence            345688999999999999988775 5677888776532               236899999999999999998876554


Q ss_pred             e
Q psy9150          84 D   84 (97)
Q Consensus        84 ~   84 (97)
                      .
T Consensus        74 ~   74 (82)
T d1f2qa1          74 E   74 (82)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=7.3e-15  Score=69.99  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             eeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEE--EEecCceEEEEEEEccCCCCCCE---EEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHE--WHYGTDRIKSKIEIDPATQMDAG---IYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g---~y~c~~~~   79 (97)
                      +.++.+|+.+.|.|.+ .|.|.|.+.|++++..+..........  .....   ..+|.|.+++..|.|   .|.|.+.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccc---ccccEEeeeEeeccCCceEEEEEEEe
Confidence            4467789999999986 899999999999766553322111000  00000   236888888877655   89999999


Q ss_pred             CCCceeEEEEE
Q psy9150          80 MYNVDTRTFKT   90 (97)
Q Consensus        80 ~~g~~~~~~~~   90 (97)
                      ..|.....+.+
T Consensus        88 ~~g~~~~~~~~   98 (111)
T d1biha2          88 AAVDEEVVLVE   98 (111)
T ss_dssp             TTCSSCEEEEE
T ss_pred             CCCCceEEEEE
Confidence            99988765533

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.1e-12  Score=58.81  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=54.1

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCce-----EEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDR-----IKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      +.+....|.++.|.|... .|.+.+.|++++..+................+     ...+|.|.+++.+|+|.|.|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            457788999999999864 58889999998876542111111000000011     134799999999999999999888


Q ss_pred             CCCcee
Q psy9150          80 MYNVDT   85 (97)
Q Consensus        80 ~~g~~~   85 (97)
                      ..+...
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            766554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.7e-11  Score=59.08  Aligned_cols=91  Identities=10%  Similarity=0.170  Sum_probs=58.5

Q ss_pred             CceeeEEEcCCeEEEEEEeccc---CCCeeEEEeCCEEcc-----------cc----ceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK---PRPHITWFKDGVELY-----------TH----MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      |...+.+..|+.+.|.|.+...   ....+.|++.+....           ..    ...+.............+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            5556889999999999997432   234589988542110           00    00011100111122256899999


Q ss_pred             CCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          65 ATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      ++..|.|.|.|.+.+..+.....+.|.|.
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            99999999999999988877777777664

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=7.2e-11  Score=54.75  Aligned_cols=86  Identities=12%  Similarity=0.074  Sum_probs=55.6

Q ss_pred             eeeEEEcCCeEEEEEEecc--cCCCeeEEEeCCEEccccceeeEEEEEecCce----EEEEEEEccCCCCCCEEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHYGTDR----IKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ..+....|+.+.|.|....  .....|.|++++..+..........  .....    ...+|.|.+++.+|+|.|.|.+.
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~--~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPF--LKSGAFEILANGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCE--ESSTTEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccc--cCCCeEEECCCccEEEeCCCHHHCEEEEEEEE
Confidence            3566778999999996422  2234699999887664211000000  01111    13469999999999999999999


Q ss_pred             cCCCce--eEEEEEEE
Q psy9150          79 NMYNVD--TRTFKTDF   92 (97)
Q Consensus        79 ~~~g~~--~~~~~~~~   92 (97)
                      +..|..  ...+.|.|
T Consensus        81 ~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          81 STNGTRILNKALDLRI   96 (98)
T ss_dssp             ETTCCEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEE
Confidence            999876  44555544

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.9e-10  Score=55.08  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCC----CeeEEEeCCEEccc-----------------ccee--eEEEEEecCceEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPR----PHITWFKDGVELYT-----------------HMYV--NLHEWHYGTDRIKSK   59 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~-----------------~~~~--~~~~~~~~~~~~~~~   59 (97)
                      |...+.+.+|+.+.|.|.+...+.    ..+.|++.......                 ...+  +.............+
T Consensus        10 p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~s   89 (124)
T d1eaja_          10 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDAS   89 (124)
T ss_dssp             SEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCC
T ss_pred             cCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEE
Confidence            445688899999999999854332    24889862110000                 0000  000000001112346


Q ss_pred             EEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          60 IEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        60 l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      |.|.+++..|.|.|.|.+.+..+.....+.|.|.
T Consensus        90 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          90 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999999988877777776665

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.06  E-value=1.7e-09  Score=51.33  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc-------cccee--eEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY-------THMYV--NLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~-------~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .+....       .....  ..............+|.|..++.+|+
T Consensus         5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1           5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred             eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence            35668889999999999998776677899997  222111       00000  00011111222366899999999999


Q ss_pred             EEEEEEEEcCC
Q psy9150          71 GIYECYADNMY   81 (97)
Q Consensus        71 g~y~c~~~~~~   81 (97)
                      |.|.|.+....
T Consensus        85 g~Y~Ca~~~~~   95 (114)
T d2cdea1          85 ASYICVVSDRG   95 (114)
T ss_dssp             SEEEEEEECSC
T ss_pred             cccceeeecCC
Confidence            99999987643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.6e-09  Score=49.18  Aligned_cols=75  Identities=15%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEeCCE--EccccceeeEE---------EEE-ecCceEEEEEEEccCCCCCCEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGV--ELYTHMYVNLH---------EWH-YGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~--~~~~~~~~~~~---------~~~-~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      +.+...+|+++.|.|.........+.|++...  .+.........         ... ........+|.|.+++.+|+|.
T Consensus         2 ~~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence            45677899999999998777777899997432  11111000000         000 0011123469999999999999


Q ss_pred             EEEEEEc
Q psy9150          73 YECYADN   79 (97)
Q Consensus        73 y~c~~~~   79 (97)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999865

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.96  E-value=4.9e-09  Score=49.59  Aligned_cols=77  Identities=17%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +.+..+.+.+|+.+.|.|...+.....+.||+  .++....            ..+...   ..........|.|..++.
T Consensus         5 Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           5 QIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNA---SLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             CSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEE---EEETTTTEEEEEESSCCG
T ss_pred             eeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceee---eeccCCCEEEeeeecCCC
Confidence            35677889999999999998776666799998  2221110            001111   111122255799999999


Q ss_pred             CCCEEEEEEEEcCC
Q psy9150          68 MDAGIYECYADNMY   81 (97)
Q Consensus        68 ~~~g~y~c~~~~~~   81 (97)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          82 GDSATYLCAVRPTS   95 (113)
T ss_dssp             GGCEEEEEEEEESS
T ss_pred             CCCcEEeEeEecCC
Confidence            99999999887544

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.94  E-value=2.5e-09  Score=50.11  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ++..+.+.+|+.+.|.|.........+.||+  .|....    .        ..+....     .......|.|.+++.+
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~L~I~~~~~~   80 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGS-----GSGRDYSFSISNLEPE   80 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEECSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEee-----cCCCEeeeEehhhccc
Confidence            4667889999999999998766666799997  222111    0        0111111     1112457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |++.|.|.+....
T Consensus        81 DsA~YyCa~~~~~   93 (106)
T d1a0ql1          81 DIATYYCLQYYNL   93 (106)
T ss_dssp             GCSEEEEEECSSS
T ss_pred             CCEeEEEEEeCCC
Confidence            9999999876543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.86  E-value=1.2e-08  Score=48.40  Aligned_cols=77  Identities=12%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +++..+.+.+|+.+.|.|.........+.||+  .++....            ..++..   ..........|.|..++.
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~~~~   82 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHA---TLHKSSSSFHLQKSSAQL   82 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEE---CCBGGGTBCCEEESSCCG
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeee---eccCCCCeEEeecccccc
Confidence            35667889999999999998776777899997  2221110            001111   001111234699999999


Q ss_pred             CCCEEEEEEEEcCC
Q psy9150          68 MDAGIYECYADNMY   81 (97)
Q Consensus        68 ~~~g~y~c~~~~~~   81 (97)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          83 SDSALYYCALFLAS   96 (115)
T ss_dssp             GGCEEEEEEEEECS
T ss_pred             ccCccceEEEEcCC
Confidence            99999999876543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.3e-08  Score=47.36  Aligned_cols=91  Identities=14%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             CceeeEEEcCCeEEEEEEeccc----CCCeeEEEe--CCEE----cc-cc-ce--------e--eEEEEEecCceEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK----PRPHITWFK--DGVE----LY-TH-MY--------V--NLHEWHYGTDRIKSKI   60 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~----~~p~i~w~~--~~~~----~~-~~-~~--------~--~~~~~~~~~~~~~~~l   60 (97)
                      .+.++.+..|+.+.|.|.....    ....+.|++  ++..    +. .. ..        +  +.. ..........+|
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~-~~~~~~~~~~sL   83 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQ-WVGDPSWKDGSI   83 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEE-ECCBGGGTBCCE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEE-EEEECCCCEEEE
Confidence            4567889999999999986422    234689986  2211    10 00 00        0  000 000011113469


Q ss_pred             EEccCCCCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150          61 EIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI   94 (97)
Q Consensus        61 ~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~   94 (97)
                      .|.+++..|+|.|.|.+.+..+.......+.+.+
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999999999988655443333334433

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.83  E-value=1.1e-08  Score=47.94  Aligned_cols=73  Identities=12%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.++|.|.........+.||+  .|+...    .        ..+....     .......|.|..++.+
T Consensus         7 ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~l~~~   81 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGS-----RSGSDYSLTISSLESE   81 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEec-----ccCCEEEEEEhhhccc
Confidence            4567889999999999998776666799997  332211    0        0111111     0111457999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |++.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (107)
T d1c5cl1          82 DFADYYCLQYAS   93 (107)
T ss_dssp             GCSEEEEEECSS
T ss_pred             CCeEEEEecCcC
Confidence            999999976543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.82  E-value=3e-08  Score=46.65  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------ccceee---EEEEEecCceEEEEEEEccCCCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------THMYVN---LHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .|+...      ......   .............+|.|..++.+|+
T Consensus         5 Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           5 QNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             ccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccccc
Confidence            35667888999999999998776677799997  332211      000000   0000111122256899999999999


Q ss_pred             EEEEEEEEc
Q psy9150          71 GIYECYADN   79 (97)
Q Consensus        71 g~y~c~~~~   79 (97)
                      +.|.|.+..
T Consensus        85 a~YyCa~~~   93 (111)
T d1bd2d1          85 AVYFCAAME   93 (111)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEeeccC
Confidence            999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.82  E-value=1.3e-08  Score=47.80  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------cceee---EEEEEecCceEEEEEEEccCCCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------HMYVN---LHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .+.....      .....   ..............|.|..++.+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            34567888999999999998665556799997  2322110      00000   0000111112245799999999999


Q ss_pred             EEEEEEEE
Q psy9150          71 GIYECYAD   78 (97)
Q Consensus        71 g~y~c~~~   78 (97)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (110)
T d1u3ha1          84 ATYFCAAS   91 (110)
T ss_dssp             SEEEECCE
T ss_pred             eeEeeeec
Confidence            99999865

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.82  E-value=6.8e-08  Score=45.53  Aligned_cols=76  Identities=13%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc--CCCeeEEEe--CCE----EccccceeeEEEEEecCceEEEEEEEccCCCCCCEEE
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK--PRPHITWFK--DGV----ELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   73 (97)
                      +++..+.+..|+.+.|.|...+.  ....+.||+  .|+    .+....++...  . ........|.|..++.+|+|.|
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~--~-~~~~~~~~L~I~~l~~~Dsa~Y   80 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVET--V-NSGSKSFSLRINDLTVEDGGTY   80 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEE--E-ETTTTEEEEEECSCCGGGCEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeE--E-ecCCceeeeEecCCcCccCEEE
Confidence            35667888999999999988543  346799997  222    11122222221  1 1222245799999999999999


Q ss_pred             EEEEEcC
Q psy9150          74 ECYADNM   80 (97)
Q Consensus        74 ~c~~~~~   80 (97)
                      .|.+...
T Consensus        81 yCA~~~~   87 (112)
T d1sq2n_          81 RCGLGVA   87 (112)
T ss_dssp             EEEECBT
T ss_pred             eEEEecC
Confidence            9987644

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.2e-08  Score=46.78  Aligned_cols=87  Identities=15%  Similarity=0.152  Sum_probs=50.9

Q ss_pred             ceeeEEEcCCeEEEEEEeccc---CCCeeEEEeCC--EEcc------------ccceeeEEEEEecCceEEEEEEEccCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK---PRPHITWFKDG--VELY------------THMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      +..+.+.+|+.+.|.|.....   ....+.|++..  ..+.            ...+..+..   .......+|.|.+++
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~l~   82 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN---FPENGTFVVNIAQLS   82 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEee---eCCCCEEEEEEhhhC
Confidence            457889999999999987432   23347798732  1110            011111211   112224579999999


Q ss_pred             CCCCEEEEEEEEcCCCceeEEEEEEEEEe
Q psy9150          67 QMDAGIYECYADNMYNVDTRTFKTDFSIT   95 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~g~~~~~~~~~~~~~   95 (97)
                      .+|+|.|.|.+.........  .+.+.++
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~--~v~L~V~  109 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRGLSF--DVSLEVL  109 (116)
T ss_dssp             GGGCEEEEEEESCGGGCCEE--EEEEEEE
T ss_pred             cCCCEEEEEEEEcCCCCceE--eEEEEEE
Confidence            99999999987643333333  3444444

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.79  E-value=1.2e-08  Score=48.41  Aligned_cols=78  Identities=12%  Similarity=0.158  Sum_probs=49.8

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEE---ccc--cceee-----EEEEEecCceEEEEEEEccCCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVE---LYT--HMYVN-----LHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~---~~~--~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +++..+.+.+|+.+.|.|.......+.+.||+  .+..   +..  .....     ..............|.|.+++.+|
T Consensus         5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGG
T ss_pred             cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccc
Confidence            45678899999999999998766667889997  3321   110  00000     000011111123479999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      +|.|.|.+..
T Consensus        85 sg~YyCa~~~   94 (115)
T d1i9ea_          85 SAVYFCAVSG   94 (115)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceecccccC
Confidence            9999997653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.79  E-value=4.9e-08  Score=46.10  Aligned_cols=81  Identities=17%  Similarity=0.361  Sum_probs=49.8

Q ss_pred             CCceeeEEEcCCeEEEEEEecc-cCCCeeEEEe--CCEEcc------ccceeeE----EEEEecCceEEEEEEEccCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKG-KPRPHITWFK--DGVELY------THMYVNL----HEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~--~~~~~~------~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      +.+..+.+.+|+.+.|.|.... .....+.||+  .+..+.      .......    .............|.|..++.+
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVV   84 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccc
Confidence            3567788999999999998643 3345688997  332211      0000000    0001111122557999999999


Q ss_pred             CCEEEEEEEEcCCC
Q psy9150          69 DAGIYECYADNMYN   82 (97)
Q Consensus        69 ~~g~y~c~~~~~~g   82 (97)
                      |+|.|.|.+....+
T Consensus        85 Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          85 DSAVYFCALSGFYN   98 (114)
T ss_dssp             GCEEEEEEEECSBT
T ss_pred             cCCCceEeCCCCCC
Confidence            99999998765443

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.79  E-value=8.4e-08  Score=45.39  Aligned_cols=79  Identities=19%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------ccc---eeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------THM---YVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+..+.+.+|+.+.|.|...+. ...+.||+  .|....      ...   .................|.|..++.+|++
T Consensus         6 ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (115)
T d1ogad1           6 SPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTG   84 (115)
T ss_dssp             ECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcccee
Confidence            4567889999999999998653 45799997  332111      000   00001112223333568999999999999


Q ss_pred             EEEEEEEcCCC
Q psy9150          72 IYECYADNMYN   82 (97)
Q Consensus        72 ~y~c~~~~~~g   82 (97)
                      .|.|.+....+
T Consensus        85 ~YyCa~~~~~~   95 (115)
T d1ogad1          85 LYLCAGAGSQG   95 (115)
T ss_dssp             EEEEEEECTTS
T ss_pred             eEcccccCCCC
Confidence            99998765443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=9.7e-09  Score=48.13  Aligned_cols=73  Identities=15%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .+.....            ..++..     ........|.|..++.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~-----~~~~~~~~L~I~~~~~   80 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSG-----SDSGKDYTLSITSLQT   80 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----ECSSSSEEEEESSCCG
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccce-----ecCCCeEEeEEccccc
Confidence            45678889999999999998766666799998  3321110            011111     1112245799999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|++.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1ospl1          81 EDVATYFCQQYW   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             ccCCcEEEeecc
Confidence            999999997654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.79  E-value=8.8e-09  Score=47.94  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +|+ .+.+.+|+.+.|.|.........+.||+  .|....   .         ..+...     ........|.|..++.
T Consensus         4 Qp~-sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~l~~   77 (103)
T d8faba1           4 QPP-SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSS-----STSGTTVTLTISGVQA   77 (103)
T ss_dssp             CCS-EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE-----EEETTEEEEEETTCCG
T ss_pred             CCC-eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEE-----CCCCCccCceEcCcch
Confidence            344 7889999999999998765566799997  332211   0         011111     0111145799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|++.|.|.+...
T Consensus        78 ~Dsa~YyCA~~~~   90 (103)
T d8faba1          78 EDEADYYCQAWDN   90 (103)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             hHCceEEeeecCC
Confidence            9999999976543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=1.3e-08  Score=47.70  Aligned_cols=74  Identities=15%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +.+..+.+.+|+++.|.|.........+.||+  .|..+.            ...++..     ........|.|..++.
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~-----~~~~~~~~L~I~~~~~   80 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSG-----SGSGTDFTLSINSVET   80 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----EEETTEEEEEESSCCG
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCccee-----cccCCEEEEEEcccCc
Confidence            34667889999999999998665666799997  332221            0011111     1111245799999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|++.|.|...+.
T Consensus        81 ~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          81 EDFGMYFCQQANS   93 (107)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CCCEEEEEEcCCC
Confidence            9999999976543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.6e-07  Score=42.95  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=46.5

Q ss_pred             cCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150          11 LGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        11 ~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~   87 (97)
                      .++.+.|.|.+.| +|.+.|.|.+++..+...................+.|.+..   .+...|.|.+.+........
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCcEE
Confidence            4677899999987 58889999999887764332211110001112244566543   35678999999877655443

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.76  E-value=3.8e-08  Score=46.49  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc--CCCeeEEEe--CCEE----ccccceeeEEEEEecCceEEEEEEEccCCCCCCEEE
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK--PRPHITWFK--DGVE----LYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY   73 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   73 (97)
                      +.+..+.+.+|+.+.|.|...+.  ....+.||+  .+..    +....+....  ... ......|.|..++.+|+|.|
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~--~~~-~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVET--VNK-GSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEE--EET-TTTEEEEEECSCCGGGCEEE
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccce--eEC-CCCceeeeecccccCCcceE
Confidence            35667888999999999998643  345689997  3322    1122222221  111 12245799999999999999


Q ss_pred             EEEEEc
Q psy9150          74 ECYADN   79 (97)
Q Consensus        74 ~c~~~~   79 (97)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            998753

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.76  E-value=3.7e-08  Score=46.87  Aligned_cols=74  Identities=15%  Similarity=0.186  Sum_probs=49.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc-----------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT-----------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      .+..+.+.+|+.+.|.|...+.....+.||+  .|+.+..                 ..++...    ........|.|.
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~L~i~   82 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLIN----HASPTLSTLTVT   82 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEE----ECSSSEEEEEEC
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceee----cccccccccccc
Confidence            3456788999999999998776677899998  3322110                 0011110    111124579999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      .++.+|++.|.|.+...
T Consensus        83 ~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccccccCceEEEEEecC
Confidence            99999999999987643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.76  E-value=6.3e-08  Score=45.24  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +.+..+.+.+|+++.|.|.........+.||+  .+....            ...+....     .......|.|..++.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~l~~   80 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGS-----GSATDFTLTISSVQA   80 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCG
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEee-----ccCCeeecEEHhhee
Confidence            35667889999999999998766666799997  222111            01111111     111245799999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|++.|.|.+..
T Consensus        81 ~DSa~YyCa~~~   92 (107)
T d1kcvl1          81 DDDADYYCGQSY   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEecC
Confidence            999999997654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=8.4e-08  Score=45.16  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             eeeEEEcCCeEEEEEEecccC-CCeeEEEe--CCEEcc-------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP-RPHITWFK--DGVELY-------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ..+.+.+|+.+.|.|...+.. ...+.||+  .|+.+.       .........+....+.....|.|..+..+|+|.|.
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   85 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYY   85 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEe
Confidence            468889999999999986544 34589998  332221       00000111122233444567999999999999999


Q ss_pred             EEEEc
Q psy9150          75 CYADN   79 (97)
Q Consensus        75 c~~~~   79 (97)
                      |.+..
T Consensus        86 Ca~~~   90 (112)
T d1kgcd1          86 CILPL   90 (112)
T ss_dssp             EECCC
T ss_pred             eeEec
Confidence            97653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=7e-08  Score=45.31  Aligned_cols=75  Identities=15%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             eeeEEEcCCeEEEEEEeccc-CCCeeEEEe--CCEEcc---c---cc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAKGK-PRPHITWFK--DGVELY---T---HM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE   74 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~--~~~~~~---~---~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   74 (97)
                      ..+.+.+|+.+.|.|..... ....+.||+  .++...   .   .. .................|.|.+++.+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            36889999999999997553 345689997  332211   0   00 00000111223334667999999999999999


Q ss_pred             EEEEc
Q psy9150          75 CYADN   79 (97)
Q Consensus        75 c~~~~   79 (97)
                      |.+..
T Consensus        86 Ca~~~   90 (110)
T d2esvd1          86 CIVVR   90 (110)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            98754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.1e-07  Score=44.93  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=49.8

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc-CCCeeEEEe--CCEEcc-------------ccceeeEEEEEecCceEEEEEEEccC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK-PRPHITWFK--DGVELY-------------THMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      +.+..+.+.+|+.+.|.|...+. ....+.||+  .+....             ...++...   .........|.|.++
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~---~~~~~~~~~L~I~~~   80 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII---QLPNRHDFHMNILDT   80 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEE---ECTTSSEEEEEESSC
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEE---EeCCCCEEEEEECcc
Confidence            35678889999999999998543 345688997  232111             00111111   111222457999999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|+|.|.|.+....
T Consensus        81 ~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          81 RRNDSGIYLCGAISLH   96 (114)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             CcCCCeEEEEEEEeCC
Confidence            9999999999876543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.76  E-value=1.5e-08  Score=47.38  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .|....            ...++...     ......+|.|..++.+
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~-----~~~~~~~L~I~~~~~~   81 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS-----GTGTDFVFTIENTLSE   81 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEe-----CCCCeeeecccCCccc
Confidence            4567888999999999998666566799996  332211            01111111     0111457999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |++.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (106)
T d1i8ka_          82 DVGDYYCLQSFN   93 (106)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCEEEeEecCcc
Confidence            999999976543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.76  E-value=7e-08  Score=45.59  Aligned_cols=77  Identities=13%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             CCceeeEEEcCCeEEEEEEecc-cCCCeeEEEe--CCEEcc------c---c----ceeeEEEEEecCceEEEEEEEccC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKG-KPRPHITWFK--DGVELY------T---H----MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~--~~~~~~------~---~----~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      +++..+.+.+|+.+.|.|.... .....+.||+  .++.+.      .   .    .+...   ..........|.|..+
T Consensus         4 Q~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~~   80 (115)
T d1fo0a_           4 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSL---NFQKPKSSIGLIITAT   80 (115)
T ss_dssp             CCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEE---EEEGGGTEEEEEECSC
T ss_pred             ccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEE---EEeccCCEEEEEECCC
Confidence            4567889999999999998753 3445688997  222111      0   0    01111   1111122457999999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|+|.|.|.+....
T Consensus        81 ~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          81 QIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             CGGGCEEEEEEEECCC
T ss_pred             CccccccccceeecCC
Confidence            9999999999876543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=3e-08  Score=46.96  Aligned_cols=79  Identities=15%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----ccceeeE------EEEEecCceEEEEEEEccCCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----THMYVNL------HEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .++.+.    .......      .............|.|..++.+|
T Consensus         5 Q~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1j8hd1           5 QLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSD   84 (115)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGG
T ss_pred             cCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccC
Confidence            35678889999999999998766667899997  232111    0000000      00011111113469999999999


Q ss_pred             CEEEEEEEEcC
Q psy9150          70 AGIYECYADNM   80 (97)
Q Consensus        70 ~g~y~c~~~~~   80 (97)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (115)
T d1j8hd1          85 AAEYFCAVSES   95 (115)
T ss_dssp             CEEEEEEEESS
T ss_pred             CccceeeecCC
Confidence            99999988754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.75  E-value=7.7e-08  Score=45.57  Aligned_cols=78  Identities=15%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc-CCCeeEEEe--CCEEcc----c-----------cceeeEEEEEecCceEEEEEEEc
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK-PRPHITWFK--DGVELY----T-----------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~--~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      +.+..+.+.+|+.+.|.|..... ....+.||+  .+....    .           ..++...   ........+|.|.
T Consensus         5 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~---~~~~~~~~~L~I~   81 (116)
T d1tvda_           5 QSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVK---HILTQKAFHLVIS   81 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEE---EEGGGTEEEEEES
T ss_pred             ccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEE---ecCceeEEeeeec
Confidence            35667889999999999987443 456799997  222111    0           0111111   0111224579999


Q ss_pred             cCCCCCCEEEEEEEEcCCC
Q psy9150          64 PATQMDAGIYECYADNMYN   82 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~~g   82 (97)
                      .++.+|+|.|.|.+....+
T Consensus        82 ~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             SCCGGGCEEEEEEEECTTT
T ss_pred             CccccccccceeeEecCCC
Confidence            9999999999998775443

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-07  Score=43.46  Aligned_cols=80  Identities=11%  Similarity=0.008  Sum_probs=51.8

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc--e
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV--D   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~--~   84 (97)
                      ..+..|.++.|.|.... ....+.|+++|.........      .........|.|..+...|.|.|.|...+....  .
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~   85 (95)
T d1olla1          13 FMVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEP   85 (95)
T ss_dssp             SEEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCC
T ss_pred             CcccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEc------cCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCC
Confidence            35678999999998743 45667888888643311100      011112457999999999999999998766542  2


Q ss_pred             eEEEEEEEE
Q psy9150          85 TRTFKTDFS   93 (97)
Q Consensus        85 ~~~~~~~~~   93 (97)
                      +..+.|.|+
T Consensus        86 Sd~leL~VT   94 (95)
T d1olla1          86 SNLLDLVVT   94 (95)
T ss_dssp             CCCEEEEEE
T ss_pred             CCCEEEEEe
Confidence            445555443

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.74  E-value=5.5e-08  Score=45.57  Aligned_cols=75  Identities=16%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----cc------ceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----TH------MYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .++...    ..      .......   ........|.|..++.+|+
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSG---SGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE---EESSSEEEEEECSCCTTCC
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccc---cCCCCEEEeEeeeeEeccc
Confidence            4567888999999999998766666799997  222111    00      0000100   1111245799999999999


Q ss_pred             EEEEEEEEcC
Q psy9150          71 GIYECYADNM   80 (97)
Q Consensus        71 g~y~c~~~~~   80 (97)
                      +.|.|.....
T Consensus        84 a~YyCA~~~~   93 (108)
T d1jhll_          84 AMYICQQHNE   93 (108)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEeeCCC
Confidence            9999976553

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.74  E-value=4.3e-08  Score=45.86  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .+....    .        ..++...     .......|.|..++.+
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~   81 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGS-----GSGQDYSLTISSLEYE   81 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             eCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeec-----ccCCEEEccccccCCc
Confidence            4567888999999999998766666789997  222111    0        0111111     1112457999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |++.|.|.....
T Consensus        82 Dsa~YyCa~~~~   93 (107)
T d1d5il1          82 DMGIYYCLQYDE   93 (107)
T ss_dssp             GCEEEEEEECSS
T ss_pred             CCEEEEeeeccC
Confidence            999999976543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.74  E-value=4.3e-08  Score=46.00  Aligned_cols=72  Identities=14%  Similarity=0.224  Sum_probs=48.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEc---c-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVEL---Y-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~---~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|...+.....+.||+  .++..   . .        ..++...     .......|.|..++.+
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~-----~~~~~~~L~I~~l~~~   83 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGS-----GSGTDYTFTISSLQPE   83 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGG
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEee-----CCCCEeEEEEeeceeC
Confidence            4567889999999999998776666789997  22211   1 0        0111111     1111457999999999


Q ss_pred             CCEEEEEEEEc
Q psy9150          69 DAGIYECYADN   79 (97)
Q Consensus        69 ~~g~y~c~~~~   79 (97)
                      |++.|.|.+..
T Consensus        84 Dsa~YyCA~~~   94 (109)
T d1bwwa_          84 DIATYYCQQYQ   94 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCceEEEeecC
Confidence            99999998654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.73  E-value=9.7e-08  Score=45.02  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc---c-ccee----eEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY---T-HMYV----NLHEWHYGTDRIKSKIEIDPATQMDAGI   72 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~---~-~~~~----~~~~~~~~~~~~~~~l~i~~~~~~~~g~   72 (97)
                      .+..+.+.+|+.+.|.|.... ....+.||+  .+..+.   . ....    ...............|.|..++.+|+|.
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence            456788899999999999865 345799998  222111   0 0000    0000011112225579999999999999


Q ss_pred             EEEEEEcCCC
Q psy9150          73 YECYADNMYN   82 (97)
Q Consensus        73 y~c~~~~~~g   82 (97)
                      |.|.+....+
T Consensus        86 YyCa~~~~~~   95 (113)
T d1h5ba_          86 YFCAAEASSG   95 (113)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEecCCCC
Confidence            9998765443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2e-08  Score=46.34  Aligned_cols=81  Identities=15%  Similarity=0.047  Sum_probs=49.5

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc--e
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV--D   84 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~--~   84 (97)
                      ..+..|+++.|.|... .+...+.|+++|...........    .........+.|..+...|.|.|.|...+....  .
T Consensus        16 ~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~----~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~   90 (99)
T d1ucta1          16 PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL----KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRY   90 (99)
T ss_dssp             SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEEC----C----CCCEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccc----cCCCCceEEEEecCCCHHHCceEEEEEECCCcccCC
Confidence            3577899999999864 34556788876532111110000    001111346899999999999999998877652  2


Q ss_pred             eEEEEEEE
Q psy9150          85 TRTFKTDF   92 (97)
Q Consensus        85 ~~~~~~~~   92 (97)
                      +..+.|.|
T Consensus        91 Sdpl~L~V   98 (99)
T d1ucta1          91 SDTLELVV   98 (99)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEe
Confidence            34454444

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.72  E-value=4.4e-08  Score=45.82  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----------c--cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----------T--HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----------~--~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .|+.+.          .  ..+....     .......|.|..++.
T Consensus         6 Q~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~l~~   80 (107)
T d1tjgl1           6 QSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGS-----GSGTEFTLTISTLRP   80 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCG
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEe-----ccCCEEEEEecccee
Confidence            34667889999999999998765567899997  222111          0  0111111     111245799999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|++.|.|....
T Consensus        81 ~DsA~YyCa~~~   92 (107)
T d1tjgl1          81 EDFATYYCQQLH   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             CcCceEEEEECc
Confidence            999999997554

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=3.3e-08  Score=47.29  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc--------cceeeEEEE----------EecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT--------HMYVNLHEW----------HYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~--------~~~~~~~~~----------~~~~~~~~~~l~i   62 (97)
                      .+..+.+.+|+.+.|.|...+...+.+.|++  .+..+..        .........          .........+|.|
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I   86 (122)
T d1nezg_           7 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTL   86 (122)
T ss_dssp             ESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEE
Confidence            3556788999999999998777777899997  3322110        000000000          0000011347999


Q ss_pred             ccCCCCCCEEEEEEEEc
Q psy9150          63 DPATQMDAGIYECYADN   79 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~   79 (97)
                      .+++.+|.|.|.|.+..
T Consensus        87 ~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          87 NKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             cccccCCCEEEEeeEeC
Confidence            99999999999998653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.5e-07  Score=41.94  Aligned_cols=87  Identities=11%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             ceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEEcc------------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      .+.+...+|+.+.|.|......  ...+.|++.  +....            ...+....   ........+|.|.+++.
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~l~~   79 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIW---DDPDAGFFTVTMTDLRE   79 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEE---EETTTTEEEEEECSCCG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeee---eeCCCCEEEEEEhhhCC
Confidence            4567888999999999875432  335779872  21110            00111111   11122256799999999


Q ss_pred             CCCEEEEEEEEcCCCc-eeEEEEEEEE
Q psy9150          68 MDAGIYECYADNMYNV-DTRTFKTDFS   93 (97)
Q Consensus        68 ~~~g~y~c~~~~~~g~-~~~~~~~~~~   93 (97)
                      +|+|.|.|.+...... ......+.+.
T Consensus        80 ~DsG~Y~C~v~~~~~~~~~~~~~~~l~  106 (108)
T d1hkfa_          80 EDSGHYWCRIYRPSDNSVSKSVRFYLV  106 (108)
T ss_dssp             GGCEEEEEEEECTTTCCEEEEEEEEEE
T ss_pred             CCCEEEEEEEecCCCCcEEEeeEEEEE
Confidence            9999999987754432 2333334443

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.71  E-value=4.5e-08  Score=45.80  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +++..+.+.+|+.+.|.|.........+.||+  .|....   .         ..++...     .......|.|..++.
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~-----~~~~~~~L~I~~~~~   80 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGS-----GSGTDFTLTINNVQS   80 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEESSCCG
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeec-----CCCCeeeeeechhhe
Confidence            45677889999999999998665566799997  332111   0         1111111     111145799999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|++.|.|.+..
T Consensus        81 ~DsA~YyCa~~~   92 (107)
T d1mexl1          81 EDLAEYFCQQYN   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             ecceeEEEeECC
Confidence            999999997654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.69  E-value=4.2e-08  Score=45.82  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .++...            ...++...     .......|.|..++.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~-----~~~~~~~L~I~~~~~   79 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGS-----GSGTEFTLTISGLQF   79 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEEEESCCG
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeee-----ccCCEEEEEEccccc
Confidence            34677889999999999998766666799997  222111            00111111     111245799999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|++.|.|.+..
T Consensus        80 ~Dsa~YyCa~~~   91 (106)
T d1op3k1          80 DDFATYHCQHYA   91 (106)
T ss_dssp             GGCSEEEEEEEC
T ss_pred             cCCCcEeeeeCC
Confidence            999999997654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=6.9e-08  Score=45.05  Aligned_cols=71  Identities=20%  Similarity=0.374  Sum_probs=47.8

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEE---cc-c--------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVE---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +|+ .+.+.+|+.+.|.|.........+.||+  .+..   +. .        ..++...     .......|.|..++.
T Consensus         6 Qp~-s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~-----~~~~~~~L~I~~~~~   79 (106)
T d1lk3l1           6 QPP-ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGS-----GSGTDFTLTIDPVEA   79 (106)
T ss_dssp             CCS-EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCG
T ss_pred             eCC-eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeee-----cCCCEEEeEECCcCh
Confidence            344 5889999999999999766667799997  2221   11 0        0111111     111145799999999


Q ss_pred             CCCEEEEEEEE
Q psy9150          68 MDAGIYECYAD   78 (97)
Q Consensus        68 ~~~g~y~c~~~   78 (97)
                      +|++.|.|...
T Consensus        80 ~Dsa~YyCa~~   90 (106)
T d1lk3l1          80 DDTAIYFCQQS   90 (106)
T ss_dssp             GGCEEEEEEEC
T ss_pred             hhCCCcccccc
Confidence            99999999654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.66  E-value=1.1e-07  Score=44.90  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             CceeeEEEcCCeEEEEEEecc-cCCCeeEEEeC-----CEEcc------ccceee--------EEEEEecCceEEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKG-KPRPHITWFKD-----GVELY------THMYVN--------LHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~-----~~~~~------~~~~~~--------~~~~~~~~~~~~~~l~i   62 (97)
                      .+..+.+.+|+.+.|.|...+ .....+.|++.     ++.+.      ......        ..............|.|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            456778999999999999866 34566899972     22110      000000        00000111222447999


Q ss_pred             ccCCCCCCEEEEEEEEc
Q psy9150          63 DPATQMDAGIYECYADN   79 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~   79 (97)
                      .+++.+|+|.|.|.+..
T Consensus        84 ~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          84 MNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cccCCCCCcEEEEeEcC
Confidence            99999999999998753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=5.5e-08  Score=45.65  Aligned_cols=71  Identities=15%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEE---cc-c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVE---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .+..   +. .        ..++..     ........|.|..++.+
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~-----~~~~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSG-----SGSGTQFSLKINSLLPE   81 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEE-----eccCCEEEEEEcccccc
Confidence            4567888999999999998765566799998  2221   11 0        011111     11112457999999999


Q ss_pred             CCEEEEEEEE
Q psy9150          69 DAGIYECYAD   78 (97)
Q Consensus        69 ~~g~y~c~~~   78 (97)
                      |++.|.|.+.
T Consensus        82 DSa~YyCA~~   91 (109)
T d1mqkl_          82 DFGSYYCQHH   91 (109)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCeeEEEeee
Confidence            9999999765

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.63  E-value=1.1e-07  Score=44.89  Aligned_cols=74  Identities=14%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc------CCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEE
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK------PRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~------~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~   61 (97)
                      +++..+.+.+|+.+.|.|...+.      ....+.||+  .|....            ...+....     .......|.
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~-----~s~~~~~L~   80 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS-----GSGTDFTLT   80 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----EETTEEEEE
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe-----CCCCeEeEE
Confidence            34567889999999999986542      123489997  332111            01111111     011145799


Q ss_pred             EccCCCCCCEEEEEEEEcC
Q psy9150          62 IDPATQMDAGIYECYADNM   80 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~~   80 (97)
                      |..++.+|+|.|.|.....
T Consensus        81 I~~l~~~Dsa~YyCA~~~~   99 (113)
T d1q9ra1          81 ITSVQAEDLAVYYCKQSYN   99 (113)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             ecccccCCCeEEEecccCC
Confidence            9999999999999986543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.61  E-value=7.1e-08  Score=45.26  Aligned_cols=70  Identities=11%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+.+.+|+++.|.|.........+.||+  .++...    .        ..+...     ........|.|..++.+|++
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSG-----SNSGNMATLTISRVEAGDEA   83 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE-----EEETTEEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEee-----ecCCCccceEEeeeccCCCE
Confidence            6889999999999997655556799997  332211    0        011111     11122457899999999999


Q ss_pred             EEEEEEEcC
Q psy9150          72 IYECYADNM   80 (97)
Q Consensus        72 ~y~c~~~~~   80 (97)
                      .|.|.....
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999987643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.60  E-value=2e-07  Score=43.26  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +++..+.+.+|+.+.|.|.... ....+.||+  .+....   .         ...+..     ........|.|..++.
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~-----~~~~~~~~L~I~~~~~   78 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSG-----SGSGTSYSLTISSMET   78 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEESSCCG
T ss_pred             CcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEE-----ecCCCEEEEEecccCc
Confidence            3566788999999999998754 344588997  222111   0         011111     0111245799999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|++.|.|....
T Consensus        79 ~Dsa~YyCa~~~   90 (104)
T d1yqvl1          79 EDAATYYCQQWG   90 (104)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCCeEEEEecC
Confidence            999999997654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.59  E-value=2.6e-07  Score=42.11  Aligned_cols=69  Identities=12%  Similarity=0.224  Sum_probs=42.7

Q ss_pred             CCeEEEEEEecccCCCeeEEEe--CCEE---ccc-cceeeEE----EEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150          12 GHKIVFICMAKGKPRPHITWFK--DGVE---LYT-HMYVNLH----EWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~--~~~~---~~~-~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      |+.+.|.|.........+.||+  .++.   +.. .......    ...........+|.|..++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            6789999998777777899997  2221   110 0000000    001111112457999999999999999987643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=1.6e-08  Score=47.37  Aligned_cols=72  Identities=13%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .|+...    .        ..++...     .......|.|..++.+
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~-----~~~~~~~L~I~~~~~~   81 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS-----GSGTDYSLTISNLEPE   81 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE-----EETTEEEEECSCCCSC
T ss_pred             cCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE-----ccCCEEEEEEeEeeec
Confidence            3456778899999999998776666799997  332211    0        0111110     0111458999999999


Q ss_pred             CCEEEEEEEEc
Q psy9150          69 DAGIYECYADN   79 (97)
Q Consensus        69 ~~g~y~c~~~~   79 (97)
                      |++.|.|....
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d3cx5k1          82 DIATYFCQHHI   92 (107)
T ss_dssp             CCSEEEEEECS
T ss_pred             CCCcEEeeeCC
Confidence            99999997643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.59  E-value=1.4e-07  Score=44.20  Aligned_cols=79  Identities=11%  Similarity=0.164  Sum_probs=49.1

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc-----cceeeE----EEEEecCceEEEEEEEccCCCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT-----HMYVNL----HEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~-----~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      +.+..+.+.+|+.+.|.|.........+.||+  .|+.+..     ......    .............|.|..+..+|+
T Consensus         5 Q~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Ds   84 (110)
T d1ac6a_           5 QTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (110)
T ss_dssp             ECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCC
Confidence            35667889999999999987655556799997  3322110     000000    000111111244688999999999


Q ss_pred             EEEEEEEEcC
Q psy9150          71 GIYECYADNM   80 (97)
Q Consensus        71 g~y~c~~~~~   80 (97)
                      +.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (110)
T d1ac6a_          85 AVYYCALSGG   94 (110)
T ss_dssp             EEEEEEEEET
T ss_pred             cccceeecCC
Confidence            9999987643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.59  E-value=8.3e-07  Score=42.39  Aligned_cols=75  Identities=13%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             CCceeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEccc------c-----------ceeeEEEEEecCceEEEEE
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELYT------H-----------MYVNLHEWHYGTDRIKSKI   60 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~l   60 (97)
                      +++..+.+.+|+.+.|.|.+.|..  ...+.||+  .++.+..      .           .++...  . ........|
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~--~-~~~~~~~~L   82 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVD--R-IPETSTSTL   82 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEE--E-ETTTTEEEE
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEe--e-eccccceee
Confidence            456678889999999999987643  44689997  3322110      0           011111  0 011124569


Q ss_pred             EEccCCCCCCEEEEEEEEc
Q psy9150          61 EIDPATQMDAGIYECYADN   79 (97)
Q Consensus        61 ~i~~~~~~~~g~y~c~~~~   79 (97)
                      .|..++.+|++.|.|....
T Consensus        83 ~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          83 TIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EECSCCGGGCEEEEEEEEE
T ss_pred             cccccccccCcEEEEeeeC
Confidence            9999999999999998653

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=6.7e-08  Score=45.17  Aligned_cols=83  Identities=12%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc--------eeeEEEEEecCce----EEEEEEEccCCCCCCEEEEE
Q psy9150           8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM--------YVNLHEWHYGTDR----IKSKIEIDPATQMDAGIYEC   75 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~c   75 (97)
                      .+.+|+.+.|.|.........+.|++.........        ......... .++    .+.+|.|.+++.+|.|.|.|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y-~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY-SGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSC-CSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcc-eeEEEEcccccEEEcCCCchhCEEEEE
Confidence            35689999999985444466799998443211100        000000000 000    13479999999999999999


Q ss_pred             EEEcCCC-ceeEEEEEE
Q psy9150          76 YADNMYN-VDTRTFKTD   91 (97)
Q Consensus        76 ~~~~~~g-~~~~~~~~~   91 (97)
                      .+.+..+ .....+.|.
T Consensus        89 ~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          89 DMTDENYRRTQATVRFH  105 (107)
T ss_dssp             EEEETTEEECCCCEEEC
T ss_pred             EEEECCCCEEEEEEEEE
Confidence            9987654 344444443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.59  E-value=3.6e-07  Score=43.48  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             CCceeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------ccce-------eeEEEEEecCceEEEEEEEcc
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------THMY-------VNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~~~-------~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +++..+.+.+|+.+.|.|...+..  ...+.||+  .|+.+.      ....       ................|.|.+
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~   85 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence            456688889999999999976543  35689997  232111      0000       000000111122245699999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|++.|.|....
T Consensus        86 l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          86 LEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CCGGGCSEEEEEECC
T ss_pred             cccccceeEEEEEcC
Confidence            999999999997653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.1e-07  Score=42.92  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=46.5

Q ss_pred             EEcCCeEEEEEEecc-cCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150           9 YVLGHKIVFICMAKG-KPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~-~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..|+.+.+.|.+.+ .|.+  .+.|++++..+......... .........+.+.+.....++...|+|.+.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~-~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA-DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC-SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccccc-ccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            578999999999965 5544  58899988876432111000 00011122456777666666677899999987654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.56  E-value=3.6e-07  Score=43.05  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------ccceeeEE-----EEEecCceEEEEEEEccCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------THMYVNLH-----EWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      +.+..+.+.+|+.+.|.|... .....+.||+  .++.+.      ........     ............|.|..+..+
T Consensus         4 QsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            456778899999999999975 3456799997  332111      00000000     000011111346999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |++.|.|.....
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999977644

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=3.3e-08  Score=47.09  Aligned_cols=72  Identities=15%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEc---cc---------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVEL---YT---------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .+...   ..         ..++...     .......|.|..++.+
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~-----~~~~~~~L~I~~~~~~   81 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS-----GSGTDYTLTISSLQPE   81 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EEBTEEEEEECSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc-----CCCCEEEEEcccCccC
Confidence            4557778899999999998765556799997  22211   10         0111111     0111357999999999


Q ss_pred             CCEEEEEEEEc
Q psy9150          69 DAGIYECYADN   79 (97)
Q Consensus        69 ~~g~y~c~~~~   79 (97)
                      |++.|.|....
T Consensus        82 DsavYyCa~~~   92 (119)
T d1f3rb2          82 DVATYFCYQYN   92 (119)
T ss_dssp             GCSEEEEEEES
T ss_pred             CCeEEEeeccC
Confidence            99999997654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.2e-07  Score=43.11  Aligned_cols=74  Identities=18%  Similarity=0.093  Sum_probs=46.6

Q ss_pred             eeEEEcCCeEEEEEEecccC----CCeeEEEeCCEEcccc--cee--------eEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKP----RPHITWFKDGVELYTH--MYV--------NLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+++..|+.+.|.|......    ...+.|.+++..+...  ...        +...  ...  ...+|.|.+++.+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~--~~~--g~~sL~I~~v~~~D~G   78 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF--DIT--NNLSIVILALRPSDEG   78 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE--EST--TTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee--ccC--CcEEEEECcCChHHCe
Confidence            57888999999999864322    1246777766543211  000        0100  011  1347999999999999


Q ss_pred             EEEEEEEcCCCc
Q psy9150          72 IYECYADNMYNV   83 (97)
Q Consensus        72 ~y~c~~~~~~g~   83 (97)
                      .|.|.+.+..+.
T Consensus        79 ~Y~C~V~~~~~~   90 (105)
T d1dr9a1          79 TYECVVLKYEKD   90 (105)
T ss_dssp             EEEEEEEECCTT
T ss_pred             EEEEEEEeCCCC
Confidence            999998765443

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.1e-07  Score=43.78  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             CceeeEEEcCCeEEEEEEeccc--CCCeeEEEe--CCEE---ccc----c--------ceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK--PRPHITWFK--DGVE---LYT----H--------MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~--~~~~---~~~----~--------~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      |.+.+.+.+|+++.|.|...+.  ....+.|++  .+..   +..    .        .++.+.   ........+|.|.
T Consensus         5 pe~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~Lti~   81 (113)
T d1smoa_           5 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE---DYHDHGLLRVRMV   81 (113)
T ss_dssp             SEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEE---EETTTTEEEEEEC
T ss_pred             ccCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEE---EECCCCEEEEEEc
Confidence            4566778899999999987542  345688997  2221   110    0        011111   0111224579999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      +++.+|+|.|.|.+...
T Consensus        82 ~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          82 NLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             SCCGGGCEEEEEEECCT
T ss_pred             cCCcccCceEEEEEECC
Confidence            99999999999987544

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.54  E-value=1e-06  Score=41.28  Aligned_cols=74  Identities=18%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcccc-----ce---------eeEEEEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTH-----MY---------VNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+..+.+.+|+.+.|.|.... ....+.||+  .|..+...     ..         ....  ..........|.|.+++
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~--~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           5 FPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFL--AERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEE--EECTTSSSEEEEESSCC
T ss_pred             CCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEE--EEcCCCCEEEEEECCcc
Confidence            456778999999999998644 345799997  33221100     00         0000  00111113579999999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|++.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999997653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.7e-07  Score=42.01  Aligned_cols=74  Identities=15%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          13 HKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      ..+.|.|.+.++.+.  .+.|.++|..+...................+.|.+..-.......|.|.+.+.......
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            468899999886544  48899999887654322221111111223455666654433456799999987654443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.4e-07  Score=43.43  Aligned_cols=74  Identities=18%  Similarity=0.155  Sum_probs=45.5

Q ss_pred             ceeeEEEcCCeEEEEEEeccc-------CCCeeEEEeCCEEccc-----------------cceeeEEEEEecCceEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK-------PRPHITWFKDGVELYT-----------------HMYVNLHEWHYGTDRIKSK   59 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~-------~~p~i~w~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~   59 (97)
                      +..+++.+|+.+.|.|.....       ....+.|++....-..                 ..+..+   .........+
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~s   84 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL---LGDPQTKNCT   84 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEE---CSCGGGTBCC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEE---eeeCcCCEEE
Confidence            467899999999999987321       1234778874321110                 001111   0011122557


Q ss_pred             EEEccCCCCCCEEEEEEEEcC
Q psy9150          60 IEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus        60 l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      |.|..++.+|+|.|.|.+...
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEET
T ss_pred             EEECCCChHHCEEEEEEEEeC
Confidence            999999999999999998643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.8e-07  Score=41.71  Aligned_cols=71  Identities=13%  Similarity=0.117  Sum_probs=43.2

Q ss_pred             EcCCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          10 VLGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..|....|.|.+.|+.++.  +.|.++|..+...................+.+.+.   .++.+.|+|.+......
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl~   89 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVTLS   89 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTTCS
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCCCC
Confidence            3567889999999986554  78999999885433222211110111123344443   44566899999986543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.53  E-value=4.5e-07  Score=42.71  Aligned_cols=73  Identities=15%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             CceeeEEEcCCeEEEEEEeccc-----CCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK-----PRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~-----~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ++..+.+.+|+.+.|.|...+.     ....+.||+  .|+...    .        ..++..     ........|.|.
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~-----~~~~~~~~L~I~   82 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG-----SGSGTDFTLKIS   82 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EECSSEEEEEES
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeee-----eccCCcccCccC
Confidence            4567889999999999997543     224689997  232111    0        011111     111224589999


Q ss_pred             cCCCCCCEEEEEEEEcC
Q psy9150          64 PATQMDAGIYECYADNM   80 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~~   80 (97)
                      .++.+|++.|.|.....
T Consensus        83 ~~~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          83 RVEAEDLGIYYCFQGSH   99 (113)
T ss_dssp             SCCGGGCEEEEEEECSS
T ss_pred             CCCcccCEEEEEEECCC
Confidence            99999999999976543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.52  E-value=4e-07  Score=42.70  Aligned_cols=73  Identities=11%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             eeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      ..+.+.+|+.+.|.|...+..  ...+.|++  .++...            ...+....   .........|.|..++.+
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGS---IDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE---EETTTTEEEEEECSCCGG
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEe---ecCCCCccccccccCCcc
Confidence            468899999999999986543  33489997  232211            01111111   111222568999999999


Q ss_pred             CCEEEEEEEEcC
Q psy9150          69 DAGIYECYADNM   80 (97)
Q Consensus        69 ~~g~y~c~~~~~   80 (97)
                      |++.|.|.....
T Consensus        85 Dsa~YyCA~~~~   96 (111)
T d1cd0a_          85 DEADYYCQSYDA   96 (111)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cCcEEEEeeccC
Confidence            999999986543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.4e-07  Score=42.42  Aligned_cols=65  Identities=20%  Similarity=0.339  Sum_probs=44.6

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ..+..|.++.|.|.......-.+.|+++|.........       .  .....+.+..++..|.|.|.|.....
T Consensus        14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~-------~--~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS-------G--EHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEE-------C--SSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcC-------C--CcccEEEEeccccccCcEEEEEEEcC
Confidence            35788999999998633334467889988543221100       1  11356899999999999999987644

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.51  E-value=1.6e-07  Score=44.03  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=46.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c-cceeeEEEE------EecCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T-HMYVNLHEW------HYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~-~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~   69 (97)
                      .+..+.+.+|+++.|.|.... ....+.||+  .|+...    . .........      ..........|.|..++.+|
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            456778899999999998765 356799998  332111    0 000000000      00001114578999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      +|.|.|....
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998664

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.50  E-value=1.5e-07  Score=44.24  Aligned_cols=70  Identities=13%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      .+.+.+|+.+.|.|...+..  ...+.||+  .++...   .         ..++...     .......|.|..++.+|
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~~~~~D   83 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGS-----KSGTSATLGITGLQTGD   83 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEE-----EETTEEEEEESSCCGGG
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeee-----CCCCEeeeEEeeecccc
Confidence            68899999999999875532  34599997  222111   0         1111111     11124579999999999


Q ss_pred             CEEEEEEEEcC
Q psy9150          70 AGIYECYADNM   80 (97)
Q Consensus        70 ~g~y~c~~~~~   80 (97)
                      ++.|.|.....
T Consensus        84 sa~YyCA~~~~   94 (111)
T d1rzfl1          84 EADYYCGTWDS   94 (111)
T ss_dssp             CSEEEEEEEET
T ss_pred             CcceEEeecCC
Confidence            99999987643

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7.9e-07  Score=40.52  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             EcCCeEEEEEEecccCCC--eeEEEeCCEEcccccee--eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          10 VLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYV--NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+....|.|.+.|+.++  .+.|.++|..+......  ...............|.+.   ..+...|+|.+....-
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~---~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP---PGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEEC---TTCGGGEEEEEECTTS
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEEC---CCCCCEEEEEEEeCCC
Confidence            446678899999997544  58899999987643211  1111111111223344443   3455679999998643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2.8e-06  Score=38.97  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .|+.+.|.|.+.|+.+.  .+.|.++|..+...................+.+.+.   ..+...|+|.+....-.
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl~   88 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDSMA   88 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTTSS
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCCCC
Confidence            56778999999997655  489999999876533222211111111123344443   34556799999876543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.49  E-value=8.4e-07  Score=41.62  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             CceeeEEEcCCeEEEEEEeccc----CCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK----PRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~----~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+..+.+.+|+.+.|.|.....    ....+.||+  .|....    .        ..++...     .......|.|..
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~-----~~~~~~~L~I~~   81 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGS-----GSGTDFTLNIHP   81 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESS
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEe-----cCCCchhccccc
Confidence            4567889999999999987532    123489997  232211    0        0111111     111145799999


Q ss_pred             CCCCCCEEEEEEEEcC
Q psy9150          65 ATQMDAGIYECYADNM   80 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~~   80 (97)
                      ++.+|++.|.|.+...
T Consensus        82 ~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          82 VEEEDAATYYCSHIRE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             ccccCCceEEEEECCC
Confidence            9999999999976544

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.49  E-value=7.4e-07  Score=42.02  Aligned_cols=72  Identities=15%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CCceeeEEEcCCeEEEEEEecccC--CCeeEEEeC--CEE---cc-c--------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKP--RPHITWFKD--GVE---LY-T--------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~~--~~~---~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      +++ .+.+.+|++++|.|...+..  ...+.||+.  +..   +. .        ..+....     .......|.|..+
T Consensus         6 Q~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v   79 (114)
T d2rhea_           6 QPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSAS-----KSGTSASLAISGL   79 (114)
T ss_dssp             CCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEE-----EETTEEEEEESSC
T ss_pred             cCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceec-----CCCCeeeeEeccc
Confidence            344 58889999999999986543  456899972  221   11 0        0111111     1112457999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|++.|.|....
T Consensus        80 ~~~DsA~YyCA~~~   93 (114)
T d2rhea_          80 ESEDEADYYCAAWN   93 (114)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccCceEEEeecC
Confidence            99999999998764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.49  E-value=1.8e-06  Score=40.45  Aligned_cols=76  Identities=14%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------c------ceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------H------MYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------~------~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+..+.+.+|+.+.|.|.... ....+.||+  .++....      .      ..................|.|..++.+
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           5 SPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            456677899999999998643 346799997  2221110      0      000000000011222457999999999


Q ss_pred             CCEEEEEEEEc
Q psy9150          69 DAGIYECYADN   79 (97)
Q Consensus        69 ~~g~y~c~~~~   79 (97)
                      |++.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998753

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.49  E-value=9.8e-08  Score=44.66  Aligned_cols=73  Identities=14%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc-CCCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK-PRPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      +.+..+.+.+|+.+.|.|..... ....+.||+  .+....            ...++...     .......|.|.+++
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~-----~~~~~~~L~I~~~~   80 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGS-----GSGTDFTLTISRLE   80 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE-----EETTEEEEEESSCC
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeee-----cCCCEEEEEehHhe
Confidence            35677889999999999987543 344688997  232111            00111111     11114579999999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          81 PEDFAVYYCQQYG   93 (108)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ecccEEEeeecCC
Confidence            9999999998653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.2e-06  Score=38.41  Aligned_cols=70  Identities=13%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+..+.|.|.+.|+.+.  .+.|.++|..+.........   ...+..........+...+...|+|.+......
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~---~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVL---HNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEE---ETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeee---cCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence            46789999999997665  48899999877543222211   122222222222233344556799999876544

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.48  E-value=2.5e-06  Score=39.99  Aligned_cols=72  Identities=13%  Similarity=0.147  Sum_probs=47.0

Q ss_pred             eeeEEEcCCeEEEEEEecccC---CCeeEEEe--CCEEcc------------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKP---RPHITWFK--DGVELY------------THMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~---~p~i~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      ..+.+.+|+++.|.|...+..   ...+.||+  .++...            ....+...     .......|.|..++.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~l~~   82 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGS-----KSGNSASLTISGLQA   82 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE-----EETTEEEEEECSCCG
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEE-----CCCCEeeEEeCcCcc
Confidence            478899999999999976532   34589997  232211            00111111     111256799999999


Q ss_pred             CCCEEEEEEEEcCC
Q psy9150          68 MDAGIYECYADNMY   81 (97)
Q Consensus        68 ~~~g~y~c~~~~~~   81 (97)
                      +|++.|.|......
T Consensus        83 ~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          83 EDEADYYCSSYDGS   96 (112)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccCEEEEEeeecCC
Confidence            99999999876543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.48  E-value=4.6e-07  Score=42.61  Aligned_cols=75  Identities=13%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             CCceeeEEEcCCeEEEEEEeccc-----CCCeeEEEe--CCEEcc----c------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGK-----PRPHITWFK--DGVELY----T------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~-----~~p~i~w~~--~~~~~~----~------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      +++..+.+.+|+.+.|.|...+.     ....+.||+  .|....    .      ....+...   ........|.|..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~---~~s~~~~~L~Is~   82 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSG---SGSGTAFTLRISR   82 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE---EECSSEEEEEESS
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEe---ecCCCEEEEEECC
Confidence            45667888999999999987553     244689987  332211    0      00001110   1112245799999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|++.|.|....
T Consensus        83 ~~~~DsAvYyCa~~~   97 (112)
T d1mjul1          83 VEAEDVGVYYCLQHL   97 (112)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             ccccCCceEEEEeCC
Confidence            999999999996543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.48  E-value=2.2e-07  Score=43.65  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=47.3

Q ss_pred             CceeeEEEcCCeEEEEEEeccc----CCCeeEEEe--CCEEcc----ccc------eeeEEEEEecCceEEEEEEEccCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGK----PRPHITWFK--DGVELY----THM------YVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~----~~p~i~w~~--~~~~~~----~~~------~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+..+.+.+|+.+.|.|.....    ....+.||+  .|+...    ...      ..+.   ..........|.|.+++
T Consensus         7 sP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~---~~~~~~~~~~L~I~~~~   83 (111)
T d1j05a_           7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRF---SGTGSRTDFTLIIDPVE   83 (111)
T ss_dssp             ECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTE---EEECSSSEEEEEESSCC
T ss_pred             cCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcE---EEecCCCEEEEEEcccc
Confidence            4567788899999999987432    233489997  333211    000      0001   01112235689999999


Q ss_pred             CCCCEEEEEEEEcC
Q psy9150          67 QMDAGIYECYADNM   80 (97)
Q Consensus        67 ~~~~g~y~c~~~~~   80 (97)
                      .+|++.|.|.+...
T Consensus        84 ~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          84 ADDVATYYCQQTNE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cccCccEEEeecCC
Confidence            99999999976543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.48  E-value=8.5e-07  Score=41.67  Aligned_cols=72  Identities=14%  Similarity=0.278  Sum_probs=45.8

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-----CCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEc
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-----RPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-----~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      .+..+.+.+|+.+.|.|...+..     ...+.||+  .|+....            ..++...     .......|.|.
T Consensus         7 sP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~-----~~~~~~~L~I~   81 (112)
T d1ncwl1           7 SPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS-----GSGTDFTLKIS   81 (112)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEES
T ss_pred             cCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee-----CCCCEEEEEEC
Confidence            35678899999999999864422     34588997  3322110            0111110     01113479999


Q ss_pred             cCCCCCCEEEEEEEEc
Q psy9150          64 PATQMDAGIYECYADN   79 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~~   79 (97)
                      .++.+|++.|.|...+
T Consensus        82 ~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          82 RVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCcCEeEEEEcCC
Confidence            9999999999996544

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.48  E-value=5e-07  Score=41.67  Aligned_cols=70  Identities=20%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             EcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          10 VLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..|....|.|.+.|+.++  .+.|.++|..+.......... ...+  ....+.|.+.   ..+...|.|.+....-.
T Consensus        15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~-~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl~   88 (100)
T d1muja1          15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFF-VNRDYSFHKLSYLTFI---PSDDDIYDCKVEHWGLE   88 (100)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCE-ECTTSCEEEEEEEEEC---CCTTCCEEEEEECTTSS
T ss_pred             ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeE-ECCCCCEEEEEEeEEc---CCCCCEEEEEEEECCCC
Confidence            356778899999998654  588999998775432111100 0111  1123344444   34566799999987543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.46  E-value=8.7e-07  Score=41.37  Aligned_cols=70  Identities=16%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc----c--------cceeeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY----T--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDA   70 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   70 (97)
                      ..+.+.+|+.+.|.|.........+.||+  .|+.+.    .        ..++...     .......|.|..++.+|+
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGS-----TSGTTATLTISGAQPEDE   81 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEE-----EETTEEEEEETTCCGGGC
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeec-----CCCCEeeeeEcCccccCC
Confidence            36788999999999988655556789997  332211    0        0111111     111245799999999999


Q ss_pred             EEEEEEEEc
Q psy9150          71 GIYECYADN   79 (97)
Q Consensus        71 g~y~c~~~~   79 (97)
                      +.|.|.+..
T Consensus        82 a~YyCA~~~   90 (108)
T d1nfde1          82 AAYYCLSSY   90 (108)
T ss_dssp             SEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999998653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=6.6e-07  Score=42.04  Aligned_cols=76  Identities=12%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcccc-----ceeeEEEE------EecCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTH-----MYVNLHEW------HYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~~-----~~~~~~~~------~~~~~~~~~~l~i~~~~~~~   69 (97)
                      .+..+.+.+|+.+.|.|.... ....+.||+  .++.....     ........      ..........|.|..++.+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            456778899999999999754 346799998  33322100     00000000      00011113479999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      ++.|.|.+..
T Consensus        84 sa~YyCA~~~   93 (113)
T d2ntsp1          84 SALYLCASSL   93 (113)
T ss_dssp             CEEEEEEEES
T ss_pred             ceeeeeeeeC
Confidence            9999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.3e-07  Score=43.22  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             CceeeEEEcCCeEEEEEEecccC-CCeeEEEeC--CEEcc------c-c-----------ceeeEEEEEecCceEEEEEE
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKP-RPHITWFKD--GVELY------T-H-----------MYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~--~~~~~------~-~-----------~~~~~~~~~~~~~~~~~~l~   61 (97)
                      .+.++++.+|+.+.|.|...... ...+.|++.  +....      . .           .++...     .......|.
T Consensus         6 sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~-----~~~~~~~L~   80 (114)
T d1akjd_           6 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGK-----RLGDTFVLT   80 (114)
T ss_dssp             ECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEE-----EETTEEEEE
T ss_pred             CCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEE-----CCCCChhcE
Confidence            45667788999999999985543 456899982  21110      0 0           011110     011134799


Q ss_pred             EccCCCCCCEEEEEEEEc
Q psy9150          62 IDPATQMDAGIYECYADN   79 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~   79 (97)
                      |.+++.+|+|.|.|.+..
T Consensus        81 I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          81 LSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             ESSCCGGGCEEEEEEEEE
T ss_pred             EccCCCCCCEEEeEeEcC
Confidence            999999999999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.44  E-value=1.6e-06  Score=41.23  Aligned_cols=74  Identities=19%  Similarity=0.355  Sum_probs=48.2

Q ss_pred             ceeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      +..+.+.+|+.+.|.|...+..  ...+.||+  .|+.+.   .         ..++....   ........|.|..++.
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~---~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI---DIAKNLAVLKILAPSE   84 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEE---EGGGTEEEEEESSCCG
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeec---cccccceecccccccc
Confidence            4567889999999999987543  35699997  232111   0         01121111   1112246899999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999976543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3.9e-06  Score=37.18  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             eeEEEcCCeEEEEEEe-cccCCCeeEEEe-CCE---Eccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           6 DYEYVLGHKIVFICMA-KGKPRPHITWFK-DGV---ELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~-~~~~~p~i~w~~-~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      .-.+..|+.+.+.|++ .--..|++.|-+ +|.   ++.-... ....  .-........|.+..+..+|.|.|+|.+.-
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW--~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSW--EENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEE--ECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccch--hhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            4467889999999998 345688999987 442   2221111 1111  112333455789999999999999999876


Q ss_pred             CCCce-eEEEEEEE
Q psy9150          80 MYNVD-TRTFKTDF   92 (97)
Q Consensus        80 ~~g~~-~~~~~~~~   92 (97)
                      ..+.. ++++++.+
T Consensus        90 ~s~vieSHSvti~V  103 (104)
T d1xaua_          90 NSQVINSHSVTIHV  103 (104)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             ChhheecceEEEEe
Confidence            66543 44554443

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.43  E-value=3.1e-06  Score=38.79  Aligned_cols=71  Identities=17%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+....|.|.+.++.++  .+.|.++|..+.........  ....+...+.+....+...+...|+|.+......
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~--~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGL--IQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCC--EECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeE--EeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence            34556799999997665  48899999887543211110  1112212222222334556778999999887543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=8.2e-07  Score=41.35  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=41.5

Q ss_pred             eeEEEcCCeEEEEEEecccC---CCeeEEE--eCCE-Eccc---c--------ceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKP---RPHITWF--KDGV-ELYT---H--------MYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~---~p~i~w~--~~~~-~~~~---~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+.+..|+++.|.|......   ...+.|+  ++.. .+..   .        ..+......   .....+|.|.+++.+
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~---~~~~~sL~I~~v~~~   79 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF---DSDSWTLRLHNLQIK   79 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEE---ETTTTEEEECSCCGG
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEec---cCCeEEEEECCCChh
Confidence            56788999999999985332   2224443  3222 1110   0        000000000   001247999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |.|.|.|.+....
T Consensus        80 D~G~Y~C~V~~~~   92 (110)
T d1ncna_          80 DKGLYQCIIHHKK   92 (110)
T ss_dssp             GCEEEEEEEEEEC
T ss_pred             HCEEEEEEEEecC
Confidence            9999999986443

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4e-06  Score=36.49  Aligned_cols=59  Identities=25%  Similarity=0.411  Sum_probs=41.2

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ....|..+.|.|.....+.+  .-.|.++|..+.+......          ...+.+..  .+++|.|.|...
T Consensus         8 v~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~----------~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           8 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------KTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----------EEEEEECG--GGCCEEEEEEEE
T ss_pred             cccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC----------ceEEEEec--CCCCceEEEEEc
Confidence            34668899999999665433  4789999999987543222          12345553  677999999865

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.42  E-value=2.8e-06  Score=38.94  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .++.+.|.|.+.++.++  .+.|.++|..+...... .............+.|.+.   .++...|.|.+......
T Consensus        16 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          16 TREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             SSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSS
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCC
Confidence            35568899999998655  48899999887543211 1111100111223345543   34455799999987654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=1.2e-06  Score=41.08  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=45.4

Q ss_pred             eeEEEcCCeEEEEEEecccCC---CeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPR---PHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~---p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      .+.+.+|+.+.|.|...+...   -.+.||+  .|+....            ..++...  .   ......|.|..++.+
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s--~---~~~~~~L~I~~~~~~   83 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGS--L---IGNKAALTITGAQTE   83 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEE--E---ETTEEEEEEESCCGG
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeec--c---cccceeeecCCCCcc
Confidence            578899999999999864332   2388997  3332210            1111111  1   112467999999999


Q ss_pred             CCEEEEEEEEc
Q psy9150          69 DAGIYECYADN   79 (97)
Q Consensus        69 ~~g~y~c~~~~   79 (97)
                      |.|.|.|....
T Consensus        84 Dsa~YyCa~~~   94 (110)
T d1oaql_          84 DEAIYFCALWY   94 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ccEeEEEEccc
Confidence            99999998664

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.38  E-value=8.4e-07  Score=41.63  Aligned_cols=76  Identities=12%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccccce----eeEEEE-------EecCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMY----VNLHEW-------HYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~~~~----~~~~~~-------~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ++..+.+.+|+.+.|.|.... ....+.||+  .++.+.....    ......       ..........|.|..+..+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            455677889999999998754 356799997  3322210000    000000       00011113469999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      ++.|.|....
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999997653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.35  E-value=1.9e-06  Score=40.40  Aligned_cols=76  Identities=13%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc-----cceeeEE------EEEecCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT-----HMYVNLH------EWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~-----~~~~~~~------~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      .+..+.+.+|+.+.|.|.... ....+.||+  .|+.+..     .......      ............|.|..++.+|
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            456678889999999998643 346789997  3322210     0000000      0000111113468999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      ++.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=7.3e-07  Score=41.73  Aligned_cols=75  Identities=13%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             ceeeEEEcCCeEEEEEEecc---cC---CCeeEEEeCCE----Ecc-c----------cceeeEEEEEecCceEEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKG---KP---RPHITWFKDGV----ELY-T----------HMYVNLHEWHYGTDRIKSKIEI   62 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~---~~---~p~i~w~~~~~----~~~-~----------~~~~~~~~~~~~~~~~~~~l~i   62 (97)
                      +..+.+.+|+.+.|.|.+..   .+   .-.+.|++...    .+. .          ..+..+.   ........+|.|
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~sL~I   83 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELM---GNMDHKVCNLLL   83 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEEC---SCGGGTBCCEEE
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEE---EeCcCCEEEEEE
Confidence            45789999999999999742   11   12345665221    110 0          0111110   011122457999


Q ss_pred             ccCCCCCCEEEEEEEEcCC
Q psy9150          63 DPATQMDAGIYECYADNMY   81 (97)
Q Consensus        63 ~~~~~~~~g~y~c~~~~~~   81 (97)
                      .+++.+|+|.|.|.+....
T Consensus        84 ~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          84 KDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CSCCGGGCEEEEEEEECC-
T ss_pred             CCCChhHCEEEEEEEEeCC
Confidence            9999999999999987543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.35  E-value=2.9e-06  Score=39.08  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=41.1

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceee-EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .|....|.|.+.|+.+.  .+.|.++|..+....... ............+.|.+..   .+...|+|.+....-
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWGL   89 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECCC
Confidence            46677899999997544  588999998876432111 1111111112244555544   334579999988654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.34  E-value=3.1e-06  Score=38.86  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceee-EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+....|.|.+.|+.+.  .+.|.++|..+....... ............+.|.+..   ++...|.|.+....-
T Consensus        18 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          18 LGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWGL   89 (99)
T ss_dssp             TTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCCC
Confidence            56678899999998655  488999998876432111 1111001112233455443   345579999987654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.33  E-value=1.1e-05  Score=37.29  Aligned_cols=69  Identities=13%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             EcCCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCce--EEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          10 VLGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDR--IKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      ..|....|.|.+.|+.++.  +.|.++|..+...........  .+..  ..+.|.+..   .+...|.|.+....-.
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~--~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAV--DGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEE--TTTEEEEEEEEEECC---CTTCCEEEEEEETTTT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeC--CCCcEEEEEEEEEec---CCCCEEEEEEEeCCCC
Confidence            3577778999999976654  889999987654332222111  2222  234455543   3445799999987543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=5e-07  Score=42.41  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             CCceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcc------ccc-----eeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELY------THM-----YVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~------~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      +.+..+.+.+|+.+.|.|.... ....+.||+  .|+.+.      ...     .................|.|..++.+
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            3456678899999999999753 346799997  222111      000     00000000011112346899999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |++.|.|.+....
T Consensus        82 Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          82 HTSQYLCASSENI   94 (112)
T ss_dssp             TCSEEEEEEECSS
T ss_pred             ccccEEEEEecCC
Confidence            9999999876443

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.8e-07  Score=41.33  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=45.2

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE--EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL--HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      ++.+.|.|.+.++.+.  .+.|.++|..+........  ...........+.|.+..-.-.....|+|.+........
T Consensus        19 ~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~~   96 (105)
T d1fp5a2          19 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPS   96 (105)
T ss_dssp             SCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTTT
T ss_pred             CCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCCC
Confidence            5578899999886543  6999999988765332111  111111122345676665444455679999998765443

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-06  Score=40.02  Aligned_cols=61  Identities=23%  Similarity=0.551  Sum_probs=42.4

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA   77 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~   77 (97)
                      ..+..|.+++|.|.... ..-.+.|+|+|.......       ...  .....+.|..+...+.|.|.|..
T Consensus        13 ~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~-------~~~--~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          13 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR-------GYG--KVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE-------EEC--SSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CcccCCCcEEEEECCCC-CCCEEEEEECCCccceee-------cCC--CceeEEEecccChhcCceEEEEe
Confidence            35788999999998743 456677888765322111       001  12457899999999999999964

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.30  E-value=6.1e-07  Score=42.21  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc----cceeeEEEEEe-------cCceEEEEEEEccCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT----HMYVNLHEWHY-------GTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~----~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~   69 (97)
                      .+..+.+.+|+.+.|.|.... ....+.||+  .|+....    ...........       ........|.|..++.+|
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             cCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            455678889999999998744 345799997  2322110    00000000000       011113578999999999


Q ss_pred             CEEEEEEEEcC
Q psy9150          70 AGIYECYADNM   80 (97)
Q Consensus        70 ~g~y~c~~~~~   80 (97)
                      ++.|.|.+...
T Consensus        86 sa~YyCa~~~~   96 (113)
T d1nfdb1          86 SAMYFCASSLR   96 (113)
T ss_dssp             CEEECEEEESS
T ss_pred             ceeEEEEeecC
Confidence            99999986543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.30  E-value=8.3e-06  Score=37.19  Aligned_cols=70  Identities=19%  Similarity=0.195  Sum_probs=45.2

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ...+..|.+++|.|.... ....+.++++|...........    .........|.|..++..+.|.|.|.....
T Consensus        10 ~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          10 GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGE----HHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECE----EETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeee----ecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            346789999999999743 4556777887643211100000    011222457999999999999999986543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.8e-06  Score=38.36  Aligned_cols=75  Identities=12%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceee-EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +..+.|.|.+.++.+.  .|.|.++|..+....... ............+.|.+..-.-.....|+|.+........+
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK   97 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEee
Confidence            4678899999887644  589999998775432111 11100011123456666654444567899999886654433

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=1.4e-05  Score=37.32  Aligned_cols=77  Identities=18%  Similarity=0.360  Sum_probs=47.4

Q ss_pred             eeeEEEcCCeEEEEEEeccc--CCCeeEEEe--CCEE----cccc---ce-eeEEE--EEec--CceEEEEEEEccCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGK--PRPHITWFK--DGVE----LYTH---MY-VNLHE--WHYG--TDRIKSKIEIDPATQM   68 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~--~~p~i~w~~--~~~~----~~~~---~~-~~~~~--~~~~--~~~~~~~l~i~~~~~~   68 (97)
                      +.+.+.+|+.+.+.|...+.  ....+.|++  .++.    +...   .. .....  +...  ......+|.|..++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            56778999999999998754  345688997  3321    1100   00 00000  0011  1122457999999999


Q ss_pred             CCEEEEEEEEcCC
Q psy9150          69 DAGIYECYADNMY   81 (97)
Q Consensus        69 ~~g~y~c~~~~~~   81 (97)
                      |+|.|.|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999875443

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=9.5e-06  Score=38.13  Aligned_cols=69  Identities=16%  Similarity=0.341  Sum_probs=43.9

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEcc------c----------cceeeEEEEEecCceEEEEEEEccCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVELY------T----------HMYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  .|+.+.      .          ..++.+...   .......|++..++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D---~s~n~~~L~~~sL~   86 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRD---TSKSQVFLKMNSLQ   86 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEE---TTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecc---cccceeeccccccc
Confidence            35778999999999988654  3488887  333221      1          112222111   11113468999999


Q ss_pred             CCCCEEEEEEEE
Q psy9150          67 QMDAGIYECYAD   78 (97)
Q Consensus        67 ~~~~g~y~c~~~   78 (97)
                      .+|.+.|.|-..
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1c5db1          87 TEDTAIYFCTRE   98 (117)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEecc
Confidence            999999999654

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=5.9e-06  Score=37.30  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+..+.|.|.+.|+.+.  .+.|.++|..+.... ..............+.+.+..   .+...|.|.+......
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence            34578999999997655  488999998775432 221111111112244555543   4456799999876544

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.23  E-value=1.2e-05  Score=36.66  Aligned_cols=70  Identities=16%  Similarity=0.283  Sum_probs=38.9

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceE--EEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRI--KSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++...|.|.+.|+.+.  .+.|.++|..+.......... ...+...  .+.|.+   ...+...|.|.+.......
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~-~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI-RNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE-ECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTCSS
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceee-cCCCceEEEEEEecc---CCCCCCEEEEEEEeCCCCC
Confidence            35566899999998665  488999998765432111100 0111112  223333   4455678999998875543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.22  E-value=2.9e-06  Score=39.72  Aligned_cols=77  Identities=12%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             CceeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc-----cceeeEEEE----EecC-ceEEEEEEEccCCCCCC
Q psy9150           3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT-----HMYVNLHEW----HYGT-DRIKSKIEIDPATQMDA   70 (97)
Q Consensus         3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~-----~~~~~~~~~----~~~~-~~~~~~l~i~~~~~~~~   70 (97)
                      .+..+.+.+|+.+.|.|.........+.||+  .|+.+..     .........    .... ......|.|.....+|+
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            3456778899999999998665567899998  3332210     000000000    0000 01123577778888999


Q ss_pred             EEEEEEEEc
Q psy9150          71 GIYECYADN   79 (97)
Q Consensus        71 g~y~c~~~~   79 (97)
                      +.|.|.+..
T Consensus        87 a~Y~Ca~~~   95 (112)
T d1fo0b_          87 RTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEES
T ss_pred             ccEEEEEec
Confidence            999998654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.21  E-value=2.4e-05  Score=36.76  Aligned_cols=72  Identities=17%  Similarity=0.293  Sum_probs=45.2

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+|+.+.|.|.++|....  .+.|++  .|+.+      ...          .++.+..   ........|+|..++
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~---D~s~~~~~L~i~~L~   86 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLV---NTSKNQFSLRLSSVT   86 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEE---ETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeec---ccchhhhhccccccc
Confidence            356789999999999886533  588987  33322      111          1111211   011114468999999


Q ss_pred             CCCCEEEEEEEEcCC
Q psy9150          67 QMDAGIYECYADNMY   81 (97)
Q Consensus        67 ~~~~g~y~c~~~~~~   81 (97)
                      .+|.+.|.|......
T Consensus        87 ~eDtAvYyCAr~~~~  101 (116)
T d7fabh1          87 AADTAVYYCARNLIA  101 (116)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccceEEEeeeecCC
Confidence            999999999765443

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.1e-05  Score=35.89  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=41.8

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+..|.+++|.|.... ....+.++++|............   .........+.|..+...|.|.|.|......
T Consensus        13 ~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~---~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          13 PVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQP---HARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             SEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC---------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             CccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEE---cCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            35788999999998643 34556677777643321110000   0111124579999999999999999876443

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.21  E-value=1.3e-05  Score=37.61  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|..  ...+.|++  .|+.+.      ..           .++.+...   .......|.|..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D---~s~~t~~L~i~~l   86 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVD---KSSSTAFMHLNSL   86 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEE---TTTTEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeec---cCceeeEeeeeec
Confidence            3577899999999998753  33588987  333221      00           11111110   1111345899999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|-..
T Consensus        87 ~~eDtAvYYCAr~   99 (115)
T d1f3dh1          87 TFEDSAVYYCAND   99 (115)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcCCcEEEEEecc
Confidence            9999999999643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.20  E-value=9.1e-06  Score=38.24  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=45.0

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------cc-----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YT-----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+      ..           ..++.+...   .......|.|..+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D---~s~~t~~L~i~~L   86 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTAD---TSTNIAYMELSSL   86 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecc---cccceEEEeeccc
Confidence            4577899999999998864  33478887  33221      10           011111110   1111335899999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|.+.|.|......
T Consensus        87 ~~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          87 RSDDTAVYYCAVPDPD  102 (117)
T ss_dssp             CGGGCEEEEEEECSSS
T ss_pred             CcCcceEEEEeEcCCC
Confidence            9999999999866543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.1e-06  Score=39.98  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC---eeEEEe--CCEEcc-------ccceeeE---EEEEecCceEEEEEEEccCCCCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP---HITWFK--DGVELY-------THMYVNL---HEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p---~i~w~~--~~~~~~-------~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      ..+.+.+|..+.|.|.......+   .+.|++  .++...       .......   .............|.|.+++.+|
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGG
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCC
Confidence            35667889999999998543333   488997  332111       0000000   00001112225579999999999


Q ss_pred             CEEEEEEEEc
Q psy9150          70 AGIYECYADN   79 (97)
Q Consensus        70 ~g~y~c~~~~   79 (97)
                      .+.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (118)
T d1i8lc_          87 TGLYICKVEL   96 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeEec
Confidence            9999997764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=4.7e-06  Score=37.49  Aligned_cols=69  Identities=20%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             EcCCeEEEEEEecccCCCe--eEEEeCCEEccccceee-EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          10 VLGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        10 ~~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+..+.|.|.+.|+.+..  +.|.++|..+....... ............+.+.+..-   +...|+|.+....
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence            3456899999999987665  68999998876433221 11111111222445555543   3346999988654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5.4e-06  Score=37.72  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=41.4

Q ss_pred             cCCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEE-EEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLH-EWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.|+.+..  +.|.++|..+......... ..........+.+.+..   .+...|+|.+....-
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEGL   85 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECcC
Confidence            356789999999987665  6899999887654322111 11111112233444443   344579999987643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=2.2e-05  Score=36.84  Aligned_cols=72  Identities=13%  Similarity=0.122  Sum_probs=43.7

Q ss_pred             eeeEEEcCCeEEEEEEecccCCC---eeEEEe--CCEEccc------cc-------eeeEEEEEecCceEEEEEEEccCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRP---HITWFK--DGVELYT------HM-------YVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p---~i~w~~--~~~~~~~------~~-------~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      ..+.+..|+.+.|.|.......+   .+.|++  .++....      ..       +.....   ........|.|.+++
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~l~   83 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSG---TFNESRVNLTIQGLR   83 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEE---EEETTEEEEEECSCC
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEE---eCCCCEEEEEhhcCc
Confidence            45677889999999997433222   378997  3322110      00       000000   001114579999999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (117)
T d1dqta_          84 AVDTGLYLCKVEL   96 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCEeEEEEEec
Confidence            9999999998753

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.5e-05  Score=36.85  Aligned_cols=77  Identities=9%  Similarity=0.058  Sum_probs=43.8

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCC--CCEEEEEEEEcCCCceeEE
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM--DAGIYECYADNMYNVDTRT   87 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~c~~~~~~g~~~~~   87 (97)
                      ...+.|.|.+.|+.+.  .+.|.+++......................+.|.+....-.  ....|+|.+....+.....
T Consensus        21 ~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~  100 (105)
T d1dn0b2          21 TSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKN  100 (105)
T ss_dssp             CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEE
T ss_pred             CCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEeE
Confidence            4568899999986543  48899988655432211110001111122445666544322  2357999999987766554


Q ss_pred             E
Q psy9150          88 F   88 (97)
Q Consensus        88 ~   88 (97)
                      +
T Consensus       101 v  101 (105)
T d1dn0b2         101 V  101 (105)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.17  E-value=4.5e-06  Score=38.08  Aligned_cols=68  Identities=10%  Similarity=0.166  Sum_probs=40.4

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..+.|.|.+.|+.+.  .+.|.+++......................+.|.+..   ++...|+|.+.....
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSSL   85 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCCC
Confidence            4578999999997654  4889999887654322211111111112244565554   344569999987654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.15  E-value=1.3e-05  Score=36.74  Aligned_cols=67  Identities=9%  Similarity=0.188  Sum_probs=41.1

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM   80 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~   80 (97)
                      ..+..|.+++|.|.... +.-.+.|+|+|...........      .......+.+..+...+.|.|.|.....
T Consensus        15 ~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~------~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          15 PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGP------KVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEE------EETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CcccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccc------cCCccEEEEEeccccccCEEEEEEeecC
Confidence            36788999999998743 4566888888754322110000      0000234566666777899999976543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.2e-06  Score=39.49  Aligned_cols=74  Identities=11%  Similarity=0.177  Sum_probs=43.5

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE-EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT   85 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~   85 (97)
                      +..+.|.|.+.++.+.  .+.|.++|..+........ ...........+.|.+....-.....|.|.+........
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   96 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE   96 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCccEE
Confidence            5668999999997655  4889999988764322111 110001112345566654432334569999998754433

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.13  E-value=2.8e-05  Score=36.69  Aligned_cols=69  Identities=16%  Similarity=0.368  Sum_probs=43.5

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------cc----------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YT----------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ..          ..++.+..   ........|+|..++.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~---D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQ---GNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEE---CSSTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEec---ccCCcceecccccCCc
Confidence            56789999999999886533  478987  33211      10          01222211   1111134699999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|...|.|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999997553

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.13  E-value=1.6e-05  Score=37.58  Aligned_cols=67  Identities=16%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------cc----------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YT----------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ..          ..++.+...   .......|.|..++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D---~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD---TSKNQFSLKLSSVTA   87 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE---TTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEecc---Cchheeccccccccc
Confidence            46789999999999886544  478987  33221      11          112222211   111134589999999


Q ss_pred             CCCEEEEEEE
Q psy9150          68 MDAGIYECYA   77 (97)
Q Consensus        68 ~~~g~y~c~~   77 (97)
                      +|.+.|.|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999953

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=3e-05  Score=36.49  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=42.5

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD---~s~~tvyL~~~~L   86 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLE---TSASTAYLQINSL   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEec---CCceeEEeeeeec
Confidence            45788999999999987643  3488887  33211      111           12222110   1111335899999


Q ss_pred             CCCCCEEEEEEE
Q psy9150          66 TQMDAGIYECYA   77 (97)
Q Consensus        66 ~~~~~g~y~c~~   77 (97)
                      +.+|.+.|.|-.
T Consensus        87 ~~eDtAvYYCAr   98 (118)
T d1nlbh1          87 KNEDTATYFCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEee
Confidence            999999999954

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.11  E-value=2.7e-05  Score=36.91  Aligned_cols=70  Identities=13%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D---~s~nt~~L~i~~L   86 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRD---NAKNTLYLQMSSL   86 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEE---GGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEec---Ccccccccceeee
Confidence            35678999999999987643  3478887  33211      111           11222111   1111335899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          87 KSEDTAMYYCVRHE  100 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCcccceeEEecC
Confidence            99999999997554

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.10  E-value=2.5e-05  Score=36.71  Aligned_cols=71  Identities=20%  Similarity=0.300  Sum_probs=44.7

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------cc-c----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YT-H----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~-~----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|....  .+.|++  .|+.+      .. .          .++.+...   .......|++..
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D---~s~~t~~L~m~s   84 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSD---KSSNTAYLELSS   84 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEec---cCceeEeecccc
Confidence            3457789999999999886543  588987  33221      11 0          11111110   111134689999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|...|.|....
T Consensus        85 L~~eDtAvYYCAr~~   99 (117)
T d1um5h1          85 LTSEDSAVYYCARSS   99 (117)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEEeecc
Confidence            999999999996543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.10  E-value=5e-08  Score=44.78  Aligned_cols=74  Identities=18%  Similarity=0.317  Sum_probs=46.4

Q ss_pred             eeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEccc------------cceeeEEEEEecCceEEEEEEEccCCCCCCE
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYT------------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAG   71 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   71 (97)
                      .+.+.+|+.+.|.|.... ....+.||+  .++.+..            ..++..   ..........|.|..++.+|+|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~---~~~~~~~~~~L~I~~~~~~Dsa   77 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRV---TLDTSKKSSSLLITASRAADTA   77 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCB---CCBGGGTBCCBCCSSCCSTTCS
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceeccccccccee---eccCcceecccCcCCCCcccCE
Confidence            456789999999998754 345799997  3332210            011111   0011111346899999999999


Q ss_pred             EEEEEEEcCCCc
Q psy9150          72 IYECYADNMYNV   83 (97)
Q Consensus        72 ~y~c~~~~~~g~   83 (97)
                      .|.|.+....|.
T Consensus        78 ~YyCA~~~~~g~   89 (96)
T d1ymmd1          78 SYFCATDTTSGT   89 (96)
T ss_dssp             CCEEEEEETTSC
T ss_pred             EEeEeEecCCCC
Confidence            999987655443

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.3e-06  Score=38.88  Aligned_cols=71  Identities=14%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ++.+.|.|.+.++.+.  .+.|.++|......................+.|.+..-.......|+|.+.....
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            5678999999987543  5899999987543211111111001112244566654433344579999998654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.08  E-value=1.6e-05  Score=37.55  Aligned_cols=69  Identities=22%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             EEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+.      ..           .++.+..   ........|.|..++
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~---d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTV---EKSSSTVYLEFSRLT   87 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEE---ETTTTEEEEEEEEEC
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeec---ccccceeeeeecccC
Confidence            567899999999988754  33488987  333221      00           1111111   011113458999999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|.+.|.|....
T Consensus        88 ~eDsAvYYCA~~~  100 (119)
T d1qnzh_          88 SDDSAVYYCAIHY  100 (119)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccceeEEEEEEec
Confidence            9999999996543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=4.7e-06  Score=38.33  Aligned_cols=71  Identities=11%  Similarity=0.086  Sum_probs=41.5

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+.+.|.|.+.++.+.  .+.|.++|..+...................+.|.+..-.-.....|.|.+....-
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l   90 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL   90 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            4578999999986433  4899999987653221111111001112345566654433345679999987643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.05  E-value=2e-05  Score=37.01  Aligned_cols=70  Identities=16%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD---~s~nt~yL~m~~L   86 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISAD---NSKNTAYLQMNSL   86 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEE---GGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEec---cccceEEeccccc
Confidence            4577899999999998865  33588886  33211      100           11222110   1111345899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (117)
T d1jpth1          87 RAEDTAVYYCARDT  100 (117)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCceEEEEeecC
Confidence            99999999996543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=4.8e-05  Score=35.01  Aligned_cols=68  Identities=21%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPATQMD   69 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   69 (97)
                      +|+.++|.|.++|....  .+.|++  .|+.+.      ..           .++.+..   ........|++..++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~---D~s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTV---DKPSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEec---cccccEEEeeeeeccccc
Confidence            47889999999886543  588987  343221      00           1111110   001113368999999999


Q ss_pred             CEEEEEEEEcCC
Q psy9150          70 AGIYECYADNMY   81 (97)
Q Consensus        70 ~g~y~c~~~~~~   81 (97)
                      .+.|.|......
T Consensus        78 TAvYYCAr~~~~   89 (103)
T d1oari_          78 SAVYYCARMWYY   89 (103)
T ss_dssp             CSEEEEEEEECS
T ss_pred             cEEEEeEEECCC
Confidence            999999754433

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=4.6e-06  Score=38.42  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+.+.|.|.+.++.+.  .+.|.++|......................+.|.+..-.......|+|.+......
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            4678899999887655  48899999876432211111110011122445666554434456799999886443

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.05  E-value=3e-05  Score=36.57  Aligned_cols=69  Identities=19%  Similarity=0.270  Sum_probs=43.0

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD---~s~nt~~L~~~sL   86 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTAD---QSSSTAYMQLNSL   86 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEE---GGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcc---cCcceEEeeeecc
Confidence            456789999999999886433  488987  33221      111           11112110   1111346899999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1eapb1          87 TSEDSAVYFCKRS   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cCCcceEEEEEEe
Confidence            9999999999643

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.04  E-value=5.1e-06  Score=38.24  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.++.+.  .+.|.++|......................+.|.+..-.-.....|.|.+....-
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            36678999999886544  5899999876543211111100001112245566654433345579999987653

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.04  E-value=3.1e-05  Score=36.35  Aligned_cols=69  Identities=12%  Similarity=0.304  Sum_probs=43.8

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------cc----------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YT----------HMYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ..          ..++.+...   .......|++..++.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D---~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD---NSKSQVFLKMNSLHT   87 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE---GGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEecc---CCCceEEcceeeeee
Confidence            56789999999999886543  477887  33321      10          011222111   111134689999999


Q ss_pred             CCCEEEEEEEEc
Q psy9150          68 MDAGIYECYADN   79 (97)
Q Consensus        68 ~~~g~y~c~~~~   79 (97)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (116)
T d1a2yb_          88 DDTARYYCARER   99 (116)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceEEEEEEeC
Confidence            999999997654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.04  E-value=4.5e-05  Score=36.03  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=43.2

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|..  ...+.|++  .|+.+.      ..           .++.+..   ........|.|..+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~---d~s~n~v~L~i~~l   86 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTV---DRSSTTAYIELVRL   86 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeee---ccCcceEEcccccc
Confidence            3577899999999998754  33588987  333221      00           1111111   01111335899999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (120)
T d1pg7x1          87 TSNDSAVYYCARE   99 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEeeec
Confidence            9999999999755

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.04  E-value=1.9e-05  Score=36.58  Aligned_cols=71  Identities=11%  Similarity=0.033  Sum_probs=41.1

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+..+.|.|.+.++.+.  .+.|.++|..+...................+.|.+..-..  ...|.|.+......
T Consensus        23 ~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          23 LQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             SSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             cCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            45678999999987655  3889998876654322211111111122244555544322  23699999886554

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.02  E-value=4.5e-05  Score=35.88  Aligned_cols=72  Identities=15%  Similarity=0.267  Sum_probs=45.1

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      -.+.+|+.+.|.|.+.|....  .+.|++  +|+.+      ...           .++.+..   ........|++..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~nt~~L~~~sL   86 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR---DNAKNSLYLQMSKV   86 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE---CSSSCEEEEEECSC
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEee---cCccceeecccccc
Confidence            357789999999999886544  478886  33211      111           1111111   01112345899999


Q ss_pred             CCCCCEEEEEEEEcCC
Q psy9150          66 TQMDAGIYECYADNMY   81 (97)
Q Consensus        66 ~~~~~g~y~c~~~~~~   81 (97)
                      +.+|.+.|.|......
T Consensus        87 ~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          87 RSEDTALYYCARLHYY  102 (118)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             CCCcceEEEeeEecCC
Confidence            9999999999765543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.01  E-value=2.6e-05  Score=37.06  Aligned_cols=68  Identities=25%  Similarity=0.473  Sum_probs=43.2

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.++|....  .+.|++  .|+.+      ...           .++.+...   .......|++..++
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D---~s~~t~yLq~~sL~   86 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQD---KAKNMAYLRMDSVK   86 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecc---cccceeeceecccc
Confidence            46689999999999886544  588987  33221      111           11222111   11123468999999


Q ss_pred             CCCCEEEEEEEE
Q psy9150          67 QMDAGIYECYAD   78 (97)
Q Consensus        67 ~~~~g~y~c~~~   78 (97)
                      .+|.+.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.01  E-value=2.4e-05  Score=36.95  Aligned_cols=72  Identities=21%  Similarity=0.294  Sum_probs=42.0

Q ss_pred             cCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.++.+    -.+.|.+++..+...................+.|.+..-.-.....|.|.+.+..-
T Consensus        31 ~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          31 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             cCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            3567899999988633    35789999987764332222111111122244555543332345679999998653

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=3e-05  Score=35.90  Aligned_cols=71  Identities=13%  Similarity=0.195  Sum_probs=42.6

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecC-c--eEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGT-D--RIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.|.|.+.++.+.  .|.|.++|..+....... ....... +  ...+.|.+..-.-.....|+|.+......
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS-WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE-ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEec-cccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            5678999999887544  599999998775432111 0000011 1  22445666544433456899999876544

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.00  E-value=3.1e-05  Score=36.22  Aligned_cols=67  Identities=13%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             EEEcCCeEEEEEEecccCC--CeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKPR--PHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|...  -.+.|++  .|+.+      ...           .++.+...   .......|++..++
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD---~s~nt~~L~~~~L~   87 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRD---NAQNNLYLQLNSLR   87 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEE---TTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEecc---Cccceeeeeeeeec
Confidence            5678999999999987643  3478887  33211      111           11111110   11113358999999


Q ss_pred             CCCCEEEEEEE
Q psy9150          67 QMDAGIYECYA   77 (97)
Q Consensus        67 ~~~~g~y~c~~   77 (97)
                      .+|.+.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.00  E-value=2.8e-05  Score=36.68  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      -.+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD---~s~nt~yLqm~sL   86 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITAD---TSTDTGYLELSSL   86 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecc---cCceEEEeeeecc
Confidence            356789999999999886544  588987  33211      100           12222110   1111346899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          87 RSEDTAVYYCAADP  100 (119)
T ss_dssp             CGGGCEEEEEEECT
T ss_pred             CcccceEEEEeecC
Confidence            99999999996543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.99  E-value=3.1e-05  Score=35.95  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-------------ceeeEEEEEecCceEEEEEEEc
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-------------MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-------------~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...             .++.+...   .......|.+.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D---~s~~t~~L~i~   86 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRD---DSQSMLYLQMN   86 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---TTTTEEEEEEC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccc---cccceeEeccc
Confidence            457889999999999876533  588887  33211      100             11122110   11113468999


Q ss_pred             cCCCCCCEEEEEEEE
Q psy9150          64 PATQMDAGIYECYAD   78 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~   78 (97)
                      .++.+|.+.|.|-..
T Consensus        87 sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          87 NLKTEDTGIYYCVRG  101 (109)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             CCCHhHCEEEEEEEc
Confidence            999999999999754

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.99  E-value=3e-05  Score=36.42  Aligned_cols=69  Identities=17%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.++|....  .+.|++  .|+.+      ...           .++.+...   ......-|++..+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D---~s~~t~yLq~~~L   86 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTAD---RSSSIVYLQLNSL   86 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEecc---Cccceeeeccccc
Confidence            346789999999999986544  478987  33221      111           11222110   1111345889999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999654

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.98  E-value=3.6e-05  Score=34.81  Aligned_cols=68  Identities=21%  Similarity=0.237  Sum_probs=39.2

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCce--EEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDR--IKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      +..+.|.|.+.++.+.  .+.|.++|..+.................  ..+.|.+..   .+...|+|.+.....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECCC
Confidence            4568899999997655  4889999988764321111000011111  233444443   334469999987544

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.4e-06  Score=37.86  Aligned_cols=72  Identities=15%  Similarity=0.323  Sum_probs=43.1

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEE--ec-C--ceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWH--YG-T--DRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~--~~-~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.++.+.  .|.|+++|..+............  .. .  ....+.|.+..-.......|.|.+....-
T Consensus        19 ~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          19 LNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL   97 (108)
T ss_dssp             SSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCCC
Confidence            36789999999887544  59999999887654322110000  01 1  11244566654333335679999987653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.3e-06  Score=38.15  Aligned_cols=66  Identities=14%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150           7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..+..|++++|.|... .+.-.+.++++|..........      ........+.|..+...|.|.|.|....
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~------~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP------QELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC------HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc------CCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            3577999999999963 3445567778775322100000      0000134789999999999999998653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=8.7e-05  Score=35.08  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=43.9

Q ss_pred             eeEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPR--PHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.++|...  -.+.|++  .|+.+      ...           .++.+...   .......|.+..
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D---~s~ntvyL~~~~   86 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD---TSATTAYMGLSS   86 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEecc---CCcceeeecccc
Confidence            345789999999999988653  3488887  33221      110           11112110   111133588999


Q ss_pred             CCCCCCEEEEEEEE
Q psy9150          65 ATQMDAGIYECYAD   78 (97)
Q Consensus        65 ~~~~~~g~y~c~~~   78 (97)
                      ++.+|.+.|.|...
T Consensus        87 L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          87 LRPEDTAVYYCARD  100 (122)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999765

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=3.9e-05  Score=36.51  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEcc-------cc----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVELY-------TH----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  .|+.+.       ..          .++.+..   ........|++..+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~---D~s~n~vyL~l~sL   86 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTA---DRSSNTAFMYLNSL   86 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEec---ccCcceEeeeeecc
Confidence            45778999999999987643  3488886  333211       00          1111211   01111345889999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|-...
T Consensus        87 ~~eDtAvYYCAR~~  100 (125)
T d1rihh1          87 TSEDSAVYYCARES  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEeeeC
Confidence            99999999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=3.9e-05  Score=35.93  Aligned_cols=70  Identities=23%  Similarity=0.332  Sum_probs=43.5

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|.+..
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D---~s~~tvyL~~~s   85 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVD---TSSSTAYMQLSS   85 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecc---cccceeEecccc
Confidence            4467889999999999886533  477887  33221      111           11222110   111134688999


Q ss_pred             CCCCCCEEEEEEEE
Q psy9150          65 ATQMDAGIYECYAD   78 (97)
Q Consensus        65 ~~~~~~g~y~c~~~   78 (97)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=5.8e-05  Score=35.46  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=42.8

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.++|..  .-.+.|++  .|+.+.      ..           .+..+..   ........|+|..
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~---D~s~~~~~L~i~~   85 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTA---VTSTTTAYMELSS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEc---ccCccEeEeeecc
Confidence            34567899999999998754  33478886  443221      00           0111111   0111134689999


Q ss_pred             CCCCCCEEEEEEE
Q psy9150          65 ATQMDAGIYECYA   77 (97)
Q Consensus        65 ~~~~~~g~y~c~~   77 (97)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.95  E-value=9e-05  Score=35.55  Aligned_cols=70  Identities=16%  Similarity=0.276  Sum_probs=43.7

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.++|..  .-.+.|++  .|+.+.      ..           .++.+..   ........|++..+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSr---D~s~~t~yL~i~~L   86 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISR---DNAKNTLYLQMNSL   86 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEE---CTTTCCEEEEEESC
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEec---cCCCceeEecEeee
Confidence            3577899999999998864  33488986  332221      10           1111111   01111335889999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (135)
T d1ieha_          87 KSEDTAVYYCAKYS  100 (135)
T ss_dssp             CSSSCEEEEEEEBS
T ss_pred             CcccceeeEEEEec
Confidence            99999999997653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.94  E-value=4.2e-05  Score=35.96  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D---~s~~t~~L~~~s   85 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVD---KSSSTAYMELAR   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecc---cCcceEeecccc
Confidence            3457789999999999876533  588887  33211      110           11111110   111134689999


Q ss_pred             CCCCCCEEEEEEE
Q psy9150          65 ATQMDAGIYECYA   77 (97)
Q Consensus        65 ~~~~~~g~y~c~~   77 (97)
                      ++.+|.+.|.|-.
T Consensus        86 L~~eDTAvYYCAr   98 (118)
T d2jelh1          86 LTSEDSAIYYCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceeeeEEE
Confidence            9999999999954

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.94  E-value=6.8e-05  Score=35.32  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             eEEEcCCeEEEEEEecccCCC---eeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP---HITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p---~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|....   .+.|++  .|+.+.      ..          .++.+...   .......|.+..+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D---~s~nt~~L~~~sL   86 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRD---TSKNQFFLQLNSV   86 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecc---cccceeecccccc
Confidence            357789999999999987653   377886  443221      10          11222110   1111345899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|...|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          87 TTEDTATYYCAGLL  100 (119)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCceEEEEeEec
Confidence            99999999996443

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.94  E-value=8.6e-05  Score=35.14  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=43.1

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   ......-|++..++
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD---~s~~t~yL~m~sL~   87 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRD---NPKNTLFLQMTSLR   87 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEE---GGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEecc---CCccEeEeeeeeec
Confidence            46789999999999886533  478887  33211      111           11222111   11113458899999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.94  E-value=4.6e-07  Score=42.03  Aligned_cols=75  Identities=9%  Similarity=0.127  Sum_probs=42.2

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR   86 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~   86 (97)
                      +..+.|.|.+.++.+.  .|.|.++|..+...................+.|.+......+...|+|.+.+......+
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~k   96 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK   96 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEEE
Confidence            5678899999886544  59999999887643211110000001111333444433323445799999987655443

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.94  E-value=7.1e-05  Score=35.63  Aligned_cols=70  Identities=19%  Similarity=0.341  Sum_probs=42.6

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      -.+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D---~s~~~~~L~i~~l   85 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLD---NAKNTLYLQMNSL   85 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEE---C--CEEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEec---CCceEEEEEEecc
Confidence            356789999999999886544  478887  33321      111           11222110   1111334899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|...|.|....
T Consensus        86 ~~eDTAvYYCAr~~   99 (126)
T d1rjca1          86 KPEDTAMYYCAADT   99 (126)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             CcccCceeEEEeec
Confidence            99999999997543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.8e-05  Score=34.42  Aligned_cols=71  Identities=10%  Similarity=0.130  Sum_probs=42.7

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEec-C--ceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG-T--DRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      +..+.|.|.+.++.+.  .+.|.++|............ .... +  ....+.|.+..-.-.....|.|.+......
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~-~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT-EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC-CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecc-cccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            5678999999886543  59999999876543211110 0001 1  122455666554334456899999986543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.93  E-value=5.3e-05  Score=35.82  Aligned_cols=69  Identities=12%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             EEEcCCeEEEEEEecccC----CCeeEEEe--CCEEcc------c----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           8 EYVLGHKIVFICMAKGKP----RPHITWFK--DGVELY------T----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~----~p~i~w~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      .+.+|+.+.|.|.+.|..    ...+.|++  .|+.+.      .          ..++...  . ........|.|..+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s--~-d~s~~~~~L~i~~l   87 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTIT--K-DASKKQVVLTLTNL   87 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEE--C-CTTTTEEEEEEESC
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhcccccee--c-ccccceeeeeEEee
Confidence            467799999999987643    24588997  333211      0          0111110  0 01112457999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        88 ~~eDsAvYyCAr~~  101 (120)
T d2agjh1          88 DPVDTATYYCARTS  101 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             eeccceEEeeEecC
Confidence            99999999997543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.93  E-value=6.2e-05  Score=35.42  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=43.7

Q ss_pred             eeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+      ...           .++.+...   .......|.+..
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D---~s~~t~yL~i~~   85 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVD---TSSSTAYMQFSS   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEec---CccceEEecccc
Confidence            34577899999999998854  33578876  33321      111           11122111   111134688999


Q ss_pred             CCCCCCEEEEEEEE
Q psy9150          65 ATQMDAGIYECYAD   78 (97)
Q Consensus        65 ~~~~~~g~y~c~~~   78 (97)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          86 LTTEDSAIYYCARY   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeee
Confidence            99999999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.92  E-value=7.7e-05  Score=35.26  Aligned_cols=70  Identities=16%  Similarity=0.277  Sum_probs=43.4

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      -.+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+      ...           .++.+...   .......|.+..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D---~s~~~~~L~i~sL   86 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRD---NSKNTLYLQMNSL   86 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEecc---ccceeEEeeeeec
Confidence            3567899999999998754  33478886  33321      111           11111110   1111346999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          87 RAEDTAVYYCAREP  100 (121)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccccceEEEEEEec
Confidence            99999999996543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=6.4e-05  Score=35.79  Aligned_cols=70  Identities=16%  Similarity=0.284  Sum_probs=43.2

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  .|+.+.      ..           .++.+...   ......-|++..+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD---~s~~t~yL~~~sL   86 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITAD---RSTSTAYLELNSL   86 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEecc---CccceEeeeeccc
Confidence            34678999999999988643  3478886  332221      00           11111110   0111345899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999997543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.91  E-value=6.3e-05  Score=35.73  Aligned_cols=69  Identities=14%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             EEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+      ...           .++.+...   .......|++..++
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD---~s~~t~~Lqm~sL~   87 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRD---DLEDFVYLQMHKMR   87 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEE---TTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEecc---CccceEeeeeeccC
Confidence            567899999999998754  33488887  33221      111           11222110   11123468999999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|...|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=5.6e-05  Score=35.82  Aligned_cols=69  Identities=19%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.++|....  .+.|++  .|+.+      ...           .++.+...   ......-|++..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D---~s~~t~~L~~~sL   86 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTAD---KSSSTAYMQLSSL   86 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEEESC
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEcc---CCcceEEeccccc
Confidence            356789999999999886533  488887  33221      110           12222111   1111345889999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|...
T Consensus        87 ~~eDTAvYYCAR~   99 (124)
T d1yedb1          87 KSEDSAVYFCTRW   99 (124)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCcceEEEeccc
Confidence            9999999999654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.90  E-value=4.3e-05  Score=36.10  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=43.4

Q ss_pred             eEEEcCCeEEEEEEecccCC----CeeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           7 YEYVLGHKIVFICMAKGKPR----PHITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~----p~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+|+.+.|.|.+.|...    -.+.|++  .|+.+.      ..          .++.+...   .......|++..
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD---~s~n~~~L~~~s   86 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRD---TSLNKFFIQLIS   86 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEE---TTTTEEEEEESS
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccc---cccceeecceee
Confidence            35778999999999987642    2478987  332221      11          12222111   111134689999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|.+.|.|....
T Consensus        87 L~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          87 VTNEDTAMYYCSREN  101 (120)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             eeccceeEEEEEecC
Confidence            999999999997543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.90  E-value=4.8e-05  Score=35.94  Aligned_cols=69  Identities=19%  Similarity=0.301  Sum_probs=43.0

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.++|...  -.+.|++  .|+.+.      ..           .++.+..   ........|++..+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~~t~yLq~~~L   86 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISR---DKGKNTVYLQMDSL   86 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEEC---TTSTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEee---cCCceEEEEEeeec
Confidence            45788999999999987643  3478887  332211      00           0111110   01111345889999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d2p49b1          87 KPEDTATYYCAAG   99 (121)
T ss_dssp             CGGGCEEEEEEES
T ss_pred             cccceeEEeeecc
Confidence            9999999999764

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=0.00014  Score=34.37  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             eEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------ccc-----------eeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------THM-----------YVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~~-----------~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|..  ...+.|++  .|+.+.      ...           ++.+..   ........|+|..+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~---D~s~~t~~L~i~~L   86 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLTSL   86 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEE---EGGGTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEe---ecCCceeeeccccc
Confidence            4577899999999998754  34588987  333221      000           111110   00111335899999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1j05b_          87 TSEDTAVYYCAPFG  100 (121)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CcCcceEEEeEeec
Confidence            99999999997543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.89  E-value=9e-05  Score=34.94  Aligned_cols=69  Identities=14%  Similarity=0.271  Sum_probs=43.1

Q ss_pred             EEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-------------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           8 EYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-------------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-------------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.+|+.+.|.|.++|..  .-.+.|++  .|+.+.      ..             .++.+...   .......|++..
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D---~s~n~~~L~~~~   87 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRD---DSKRRVYLQMNT   87 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---TTTTEEEEEECS
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecc---cccceeccceee
Confidence            467899999999998764  34588987  443221      00             01111110   111134688999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|...|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999997543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.89  E-value=5.8e-05  Score=35.91  Aligned_cols=69  Identities=19%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D---~s~nt~yL~~~~   85 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTAD---TSANTAYMELRS   85 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecc---cCceEEEEEEEc
Confidence            3467789999999999886533  478887  33221      111           11222111   011134588999


Q ss_pred             CCCCCCEEEEEEE
Q psy9150          65 ATQMDAGIYECYA   77 (97)
Q Consensus        65 ~~~~~~g~y~c~~   77 (97)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999964

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.88  E-value=7.7e-05  Score=35.82  Aligned_cols=69  Identities=13%  Similarity=0.272  Sum_probs=42.8

Q ss_pred             eEEEcCCeEEEEEEecccCC----CeeEEEe--CCEEcc------c----------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           7 YEYVLGHKIVFICMAKGKPR----PHITWFK--DGVELY------T----------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~----p~i~w~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ..+.+|+.+.|.|.+.|...    ..+.|++  .|+.+.      .          ..++.+..   ........|.|..
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~---d~s~~~~~L~i~~   86 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITK---DTSKNQVVLVMTR   86 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEE---ETTTTEEEEEECS
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecc---cccccEEEccccc
Confidence            35778999999999887542    2588987  332211      0          01111111   0111134699999


Q ss_pred             CCCCCCEEEEEEEE
Q psy9150          65 ATQMDAGIYECYAD   78 (97)
Q Consensus        65 ~~~~~~g~y~c~~~   78 (97)
                      ++.+|...|.|...
T Consensus        87 l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          87 VSPVDTATYFCAHR  100 (132)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcccceEEEEEEe
Confidence            99999999999754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.88  E-value=0.00016  Score=34.53  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=43.8

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  .|+.+.      ..           .++.+...   .......|++..+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D---~s~~tv~L~~~~L   85 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTAD---QATSTAYMELTNL   85 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEecc---CCccEEEEEeecc
Confidence            45778999999999988643  3488887  333211      00           11112110   1111345889999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=7.7e-05  Score=35.47  Aligned_cols=69  Identities=19%  Similarity=0.284  Sum_probs=43.5

Q ss_pred             eeEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           6 DYEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      ...+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+..   ........|++..
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~---D~s~nt~yL~m~~   84 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTA---DTSSNIAYMQLSS   84 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEe---cCCccEEEeeecc
Confidence            3457789999999999886533  477886  33221      111           1111211   1111234689999


Q ss_pred             CCCCCCEEEEEEE
Q psy9150          65 ATQMDAGIYECYA   77 (97)
Q Consensus        65 ~~~~~~g~y~c~~   77 (97)
                      ++.+|...|.|..
T Consensus        85 L~~eDTAvYYCAr   97 (126)
T d1lmka1          85 LTSEDSAVYYCAR   97 (126)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.85  E-value=7.2e-05  Score=35.25  Aligned_cols=69  Identities=20%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      -.+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D---~s~nt~~L~m~~L   86 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVD---TSTNTAYMELSSL   86 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEec---CcceEEecccccc
Confidence            357789999999999876533  478876  33211      100           11111110   1111346889999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (120)
T d1ad9b1          87 RSEDTAFYFCARE   99 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEEEc
Confidence            9999999999754

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.2e-05  Score=36.17  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150          11 LGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV   83 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~   83 (97)
                      .+..+.|.|.+.++.+    -.+.|.+++..+...................+.|.+..-.-.....|+|.+......
T Consensus        17 ~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             TTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             cCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            4667889999988644    246788888876543211111110011112344555433223355799999986544

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.85  E-value=1.7e-05  Score=36.76  Aligned_cols=67  Identities=16%  Similarity=0.444  Sum_probs=40.3

Q ss_pred             EEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc----------ceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150           9 YVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH----------MYVNLHEWHYGTDRIKSKIEIDPATQM   68 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   68 (97)
                      +.+|+.+.|.|.+.|..  ...+.|++  .|+.+      ...          .++.+..   ........|+|..++.+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSr---d~s~n~~~L~i~~l~~e   81 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISR---DNAKKTVYLEMNSLEPE   81 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEE---CTTTCCEEEEECSCCGG
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEec---CCceeEEEEeecCCCcc
Confidence            56799999999998753  33478887  33221      110          1222211   11112346899999999


Q ss_pred             CCEEEEEEEE
Q psy9150          69 DAGIYECYAD   78 (97)
Q Consensus        69 ~~g~y~c~~~   78 (97)
                      |.+.|.|...
T Consensus        82 DtAvYyCA~~   91 (107)
T d1sjva_          82 DTAVYYCYTH   91 (107)
T ss_dssp             GCSEEEEEEC
T ss_pred             cceeeeEecc
Confidence            9999999654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.84  E-value=0.00018  Score=34.07  Aligned_cols=69  Identities=16%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEcc------c-----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVELY------T-----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|....  .+.|++  .|+.+.      .           ..++.+...   ......-|++..+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD---~s~~t~yL~~~~L   86 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSAD---RSTNTAHLQWSSL   86 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEE---TTTTEEEEEESSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeec---CCCcEEEEeeecc
Confidence            457889999999999886533  478887  332111      0           012222111   1111346889999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|...
T Consensus        87 ~~eDTA~YYCAR~   99 (124)
T d2b1hh1          87 KPSDTALYYCARL   99 (124)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEEeec
Confidence            9999999999643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.84  E-value=0.00015  Score=34.44  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...           .++.+...   .......|++..++
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D---~s~nt~~L~~~~L~   87 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRD---NAKNSLYLQMNSLR   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEE---TTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEecc---CCCcEEEeeeeeec
Confidence            56789999999999886433  588887  33211      111           11111110   11113458999999


Q ss_pred             CCCCEEEEEEEE
Q psy9150          67 QMDAGIYECYAD   78 (97)
Q Consensus        67 ~~~~g~y~c~~~   78 (97)
                      .+|.+.|.|...
T Consensus        88 ~eDtavYYCAr~   99 (126)
T d1dfbh1          88 AEDMALYYCVKG   99 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEEEec
Confidence            999999999754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.84  E-value=8.3e-05  Score=35.53  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             eEEEcCCeEEEEEEecccCC--CeeEEEe--CCEEcc------cc-----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPR--PHITWFK--DGVELY------TH-----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~--p~i~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.++|...  ..+.|++  .|+.+.      ..           .++.+...   .......|++..+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D---~s~~t~yL~~~sL   86 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITAD---ESTSTAYMELSSL   86 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecc---cccceEEeeeeec
Confidence            45778999999999987643  3588887  333221      11           11111110   1111335888999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (130)
T d1rzga1          87 RSEDTAVFYCASP   99 (130)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCccEEEEEEEe
Confidence            9999999999643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.82  E-value=0.00017  Score=34.35  Aligned_cols=69  Identities=17%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             EEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.++|..  .-.+.|++  .|+.+      ...           .++.+...   ......-|++..++
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D---~s~~t~yL~~~~L~   87 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRN---DSKNTLFLQMDSLR   87 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEE---TTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEecc---CCccEEEeeeeeee
Confidence            467899999999998754  33478886  33211      111           11122111   11113458899999


Q ss_pred             CCCCEEEEEEEEc
Q psy9150          67 QMDAGIYECYADN   79 (97)
Q Consensus        67 ~~~~g~y~c~~~~   79 (97)
                      .+|.+.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999997553

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.82  E-value=8.6e-05  Score=35.39  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=43.4

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEcc------c-----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVELY------T-----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|....  .+.|++  .|+.+.      .           ..++.+...   .......|++..+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D---~s~~t~yL~~~sL   86 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITAD---KSTSTVYLELRNL   86 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeec---CCCceEEeeeeec
Confidence            357789999999999886544  367876  332111      0           012222111   1111345889999


Q ss_pred             CCCCCEEEEEEEEc
Q psy9150          66 TQMDAGIYECYADN   79 (97)
Q Consensus        66 ~~~~~g~y~c~~~~   79 (97)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          87 RSDDTAVYFCAGVY  100 (128)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccCceEEEEeEEe
Confidence            99999999997543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=2e-05  Score=36.24  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=38.9

Q ss_pred             cCCeEEEEEEecccCC----CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPR----PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~----p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.+.|.+.++.+    -.+.|.++|..+...................+.|.+..-.-.....|.|.+.+..-
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence            3556789999987543    36789998877653321111111001111234455443322234569999998653

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.80  E-value=0.0001  Score=34.84  Aligned_cols=69  Identities=14%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------ccc-------------ceeeEEEEEecCceEEEEEEEcc
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YTH-------------MYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~~-------------~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+      ...             .++.+...   .......|++..
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD---~s~nt~~L~~~s   87 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRD---NSQSILYLQMNT   87 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEE---TTTTEEEEEECS
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeee---cccceeccceee
Confidence            57789999999999876433  588986  33322      100             11111110   111134589999


Q ss_pred             CCCCCCEEEEEEEEc
Q psy9150          65 ATQMDAGIYECYADN   79 (97)
Q Consensus        65 ~~~~~~g~y~c~~~~   79 (97)
                      ++.+|...|.|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999997643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.79  E-value=0.00026  Score=33.93  Aligned_cols=69  Identities=16%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEcc-------c----------cceeeEEEEEecCceEEEEEEEccC
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVELY-------T----------HMYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      ..+.+|+.+.|.|.+.|....  .+.|++  .|+.+.       .          ..++.+...   .......|++..+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D---~s~~t~~L~~~~L   85 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISAD---ESTRTVYLHLRGL   85 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEec---cCcceeEEeeccC
Confidence            357789999999999886533  477876  332111       0          012222110   1111346889999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|.+.|.|...
T Consensus        86 ~~eDtA~YYCAr~   98 (133)
T d1rzfh1          86 RSDDTAVYYCASN   98 (133)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCCEEEEeeec
Confidence            9999999999654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.78  E-value=0.00016  Score=34.45  Aligned_cols=68  Identities=15%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             EEEcCCeEEEEEEecccCC----CeeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           8 EYVLGHKIVFICMAKGKPR----PHITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~----p~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      .+.+|+.+.|.|.+.|...    ..+.|++  .|+.+.      ..          .++.+..   ........|.|..+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~---d~s~~t~~L~i~~l   87 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK---DTSSNQVFLKITSV   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE---ETTTTEEEEEECSC
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec---ccCCcEEEcceecc
Confidence            4667999999999887532    2467886  332211      00          1121111   01111346999999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999643

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=3.7e-05  Score=36.12  Aligned_cols=70  Identities=14%  Similarity=0.274  Sum_probs=43.0

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      .+.+|+.+.|.|.++|....  .+.|++  .|+.+.      ..          .++.+...   .......|++..++.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D---~s~~tv~L~~~~L~~   87 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRD---TSKNQVFLKMNSLQT   87 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEE---GGGTEEECCEESCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccc---cccchhhcceeccCC
Confidence            35689999999999886533  478987  333221      11          11111110   011133588899999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|...|.|.....
T Consensus        88 eDTAvYyCAr~~~  100 (116)
T d1fn4b1          88 DDTGTYYCTRDLY  100 (116)
T ss_dssp             CCCEEEEEEEECS
T ss_pred             CCCEEEEEEeecC
Confidence            9999999965433

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.77  E-value=0.00011  Score=35.04  Aligned_cols=69  Identities=19%  Similarity=0.365  Sum_probs=42.8

Q ss_pred             EEEcCCeEEEEEEecccC--CCeeEEEe--CCEEccc-----------c-----------ceeeEEEEEecCceEEEEEE
Q psy9150           8 EYVLGHKIVFICMAKGKP--RPHITWFK--DGVELYT-----------H-----------MYVNLHEWHYGTDRIKSKIE   61 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~~-----------~-----------~~~~~~~~~~~~~~~~~~l~   61 (97)
                      .+.+|+.+.|.|.++|..  .-.+.|++  .|+.+.-           .           .++.+..   ........|.
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~---d~s~~~~~L~   87 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSR---DNAKNTVNLQ   87 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEE---EGGGTEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEec---cCCceEEEEe
Confidence            456899999999998764  33588987  2321110           0           0111111   0111234689


Q ss_pred             EccCCCCCCEEEEEEEEc
Q psy9150          62 IDPATQMDAGIYECYADN   79 (97)
Q Consensus        62 i~~~~~~~~g~y~c~~~~   79 (97)
                      |..++.+|...|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999997553

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.76  E-value=0.00027  Score=33.47  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             EEEcCCeEEEEEEecccCC----CeeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEccC
Q psy9150           8 EYVLGHKIVFICMAKGKPR----PHITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDPA   65 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~----p~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~   65 (97)
                      .+.+|+.+.|.|.+.|...    -.+.|++  .|+.+.      ..          .++.+...   .......|+|..+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D---~s~~~~~L~i~sl   87 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKD---TSNNQAFLNMMTV   87 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEE---GGGTEEEEEECSC
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEcccc---ccceeEEcceeec
Confidence            4678999999999887532    2467986  332211      00          11111110   1111346999999


Q ss_pred             CCCCCEEEEEEEE
Q psy9150          66 TQMDAGIYECYAD   78 (97)
Q Consensus        66 ~~~~~g~y~c~~~   78 (97)
                      +.+|...|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.76  E-value=0.00014  Score=34.61  Aligned_cols=68  Identities=15%  Similarity=0.244  Sum_probs=43.0

Q ss_pred             EEEcCCeEEEEEEecccCC---CeeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKPR---PHITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~---p~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|...   -.+.|++  .|+.+.      ..          .++.+...   .......|.+..++
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d---~s~nt~yL~l~~l~   87 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRD---TSKNQFFLKLNSVT   87 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEE---TTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecc---cccceeecceeccc
Confidence            4678999999999988653   3578987  343321      10          01111110   11113468999999


Q ss_pred             CCCCEEEEEEEE
Q psy9150          67 QMDAGIYECYAD   78 (97)
Q Consensus        67 ~~~~g~y~c~~~   78 (97)
                      .+|...|.|...
T Consensus        88 ~eDtAvYyCAr~   99 (127)
T d3cx5j1          88 TEDTATYYCARS   99 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEeeee
Confidence            999999999743

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.74  E-value=0.00028  Score=33.12  Aligned_cols=70  Identities=16%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEcc------cc----------ceeeEEEEEecCceEEEEEEEccCCC
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVELY------TH----------MYVNLHEWHYGTDRIKSKIEIDPATQ   67 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~   67 (97)
                      .+.+|+.+.|.|.++|....  .+.|++  .|+.+.      ..          .++.+...   .......|++..++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD---~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRD---IVRNILTLQMSRLRS   87 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEE---TTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEecc---ccceeeeeccccccC
Confidence            46789999999999886544  588887  332211      10          11222110   111134689999999


Q ss_pred             CCCEEEEEEEEcC
Q psy9150          68 MDAGIYECYADNM   80 (97)
Q Consensus        68 ~~~g~y~c~~~~~   80 (97)
                      +|.+.|.|.....
T Consensus        88 eDtA~YyCAr~~~  100 (118)
T d1lo4h1          88 EDTAIYYCARGTS  100 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEecccCC
Confidence            9999999975443

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=5.3e-05  Score=34.69  Aligned_cols=71  Identities=11%  Similarity=0.187  Sum_probs=40.5

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .+..+.|.|.+.++.+.  .+.|.+++............  ........+.|.+..-.. +.+.|.|.+.......
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~--~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVL--QSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--ETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeec--CCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            45789999999886544  58898776443211111111  011122245566655443 3567999998765543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7e-05  Score=34.35  Aligned_cols=70  Identities=10%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             cCCeEEEEEEecccCCC----eeEEEeCCEEccccceeeEEEEEecCc--eEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP----HITWFKDGVELYTHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p----~i~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.|+.+.    .+.|.+++.............  ....  ...+.|.+..-.-.....|.|.+.+...
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~--~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l   90 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEK--QRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL   90 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEE--ETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEE--CCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            46678999999886543    456777766544322111111  1222  1234455443322335679999988643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.71  E-value=0.00016  Score=34.56  Aligned_cols=68  Identities=16%  Similarity=0.344  Sum_probs=42.3

Q ss_pred             EEEcCCeEEEEEEecccCCC--eeEEEe--CCEEcc------c-------------cceeeEEEEEecCceEEEEEEEcc
Q psy9150           8 EYVLGHKIVFICMAKGKPRP--HITWFK--DGVELY------T-------------HMYVNLHEWHYGTDRIKSKIEIDP   64 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~~------~-------------~~~~~~~~~~~~~~~~~~~l~i~~   64 (97)
                      .+.+|+.+.|.|.+.|....  .+.|++  .|+.+.      .             ..++.+...   .......|++..
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D---~s~nt~~Lq~~~   87 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRD---DSKNTLYLQMNS   87 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEE---GGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecc---cccceeecceec
Confidence            56789999999999875533  588887  332210      0             011112111   011134589999


Q ss_pred             CCCCCCEEEEEEEE
Q psy9150          65 ATQMDAGIYECYAD   78 (97)
Q Consensus        65 ~~~~~~g~y~c~~~   78 (97)
                      ++.+|...|.|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999644

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.67  E-value=2e-05  Score=36.01  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             CeEEEEEEecccCCCe--eEEEeCCEEccccc----ee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          13 HKIVFICMAKGKPRPH--ITWFKDGVELYTHM----YV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      ..+.|.|.+.|+.+..  |.|.+++..+....    .. .............+.|.+..   .+...|+|.+.....
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~---~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG---GLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT---TCGGGEEEEEEEGGG
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            4688999999987665  77999876543211    00 00000011111234455543   344579999986543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.63  E-value=9.3e-05  Score=34.93  Aligned_cols=69  Identities=17%  Similarity=0.273  Sum_probs=42.9

Q ss_pred             eEEEcCCeEEEEEEecccCCC--eeEEEe--CCEEc------cc--c-----------ceeeEEEEEecCceEEEEEEEc
Q psy9150           7 YEYVLGHKIVFICMAKGKPRP--HITWFK--DGVEL------YT--H-----------MYVNLHEWHYGTDRIKSKIEID   63 (97)
Q Consensus         7 ~~~~~g~~~~l~c~~~~~~~p--~i~w~~--~~~~~------~~--~-----------~~~~~~~~~~~~~~~~~~l~i~   63 (97)
                      ..+.+|+.+.|.|.++|....  .+.|++  .|+.+      ..  .           .++.+..   .......-|.+.
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSr---D~s~nt~yL~~~   86 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISR---DDSRNSIYLQMN   86 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEE---CTTTSEEEEEEE
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcc---ccccceeeceec
Confidence            457889999999999886533  477887  33221      10  0           0111110   001113358999


Q ss_pred             cCCCCCCEEEEEEEE
Q psy9150          64 PATQMDAGIYECYAD   78 (97)
Q Consensus        64 ~~~~~~~g~y~c~~~   78 (97)
                      .++.+|.+.|.|...
T Consensus        87 ~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          87 RLRVDDTAIYYCTRA  101 (121)
T ss_dssp             SCCGGGCEECEEEEE
T ss_pred             ccCCCcceEEEEecc
Confidence            999999999999654

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.59  E-value=0.00031  Score=31.15  Aligned_cols=63  Identities=6%  Similarity=0.009  Sum_probs=36.2

Q ss_pred             CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150          12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ...+.|.|.+.++.++.  +.|.++|..........    ....+.+ ..+........  ..|+|.+....
T Consensus        13 ~~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~----~~~~gty-s~~s~~~~~~~--~~yTC~V~H~~   77 (86)
T d1hxma2          13 KNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIV----ISPSGKY-NAVKLGKYEDS--NSVTCSVQHDN   77 (86)
T ss_dssp             EETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEE----ECTTSSE-EEEEEEEETTT--TTCEEEEEETT
T ss_pred             CCCCEEEEEEeeEECCCCEEEEEECCEEccCcEEee----eccCCcE-EEEEEEecCCC--CEEEEEEEECC
Confidence            34568999999987664  77999987665332211    1122222 22222333333  35999998764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00063  Score=31.74  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEc
Q psy9150          57 KSKIEIDPATQMDAGIYECYADN   79 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~   79 (97)
                      ..+|.|.+++.+|++.|.|.+..
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEec
Confidence            44799999999999999997654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00012  Score=33.46  Aligned_cols=71  Identities=14%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.|.|.+.|+.+.  .+.|..++............  ........+.|.+..-.-. .+.|.|.+.+..+..
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~--~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASST   91 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEeccccc--CCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCE
Confidence            35679999999997644  48897665332111100110  1111122455666655543 467999999866544

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00033  Score=31.43  Aligned_cols=53  Identities=23%  Similarity=0.496  Sum_probs=36.8

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEE
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYA   77 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~   77 (97)
                      -.-|..+.|.|+..+.  ..|.|.+++..++.....              .|.+..-. .+++|.|.|..
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~--------------~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEEC
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCCCCCc--------------EEEEccccccccCcceEEec
Confidence            4568999999997653  469999999887643211              34444433 46899999964

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.42  E-value=4.5e-05  Score=35.81  Aligned_cols=68  Identities=18%  Similarity=0.346  Sum_probs=42.4

Q ss_pred             EEEcCCeEEEEEEecccC--CCeeEEEe--CCEEc------ccc-----------ceeeEEEEEecCceEEEEEEEccCC
Q psy9150           8 EYVLGHKIVFICMAKGKP--RPHITWFK--DGVEL------YTH-----------MYVNLHEWHYGTDRIKSKIEIDPAT   66 (97)
Q Consensus         8 ~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~   66 (97)
                      .+.+|+.+.|.|.+.|..  .-.+.|++  .|+.+      ...           .++.+..   ........|.+..++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisr---D~s~~t~~L~~~sL~   87 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISR---DKSKNTLYLQMNSLR   87 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEEC---CTTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEe---ccccceEEeeecccc
Confidence            577899999999998753  33577876  33211      101           1111110   011224468999999


Q ss_pred             CCCCEEEEEEEE
Q psy9150          67 QMDAGIYECYAD   78 (97)
Q Consensus        67 ~~~~g~y~c~~~   78 (97)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1b2wh1          88 PEDTAVYYCARG   99 (117)
T ss_dssp             GGGCEEEECCEE
T ss_pred             CCcceEEEEccc
Confidence            999999999654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0011  Score=29.90  Aligned_cols=68  Identities=18%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             eeeEEEcCCeEEEEEEecccCCCeeE-EEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150           5 FDYEYVLGHKIVFICMAKGKPRPHIT-WFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY   81 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~~~~~p~i~-w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~   81 (97)
                      ..+.+.+|+.+.+.|.+.. |...+. |..++..+... ......    .    ...+.|......+.|.|.|.+....
T Consensus        13 ~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~D----p----k~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWD----S----RKGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             EEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEE----T----TTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEEC----C----CCCEEEeCCCcccCeEEEEEEEECC
Confidence            4567888999999999965 555554 44455544322 211110    0    2358889999999999999987553

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.30  E-value=0.00071  Score=32.05  Aligned_cols=70  Identities=13%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE--EEEE--ecC--ceEEEEEEEccCCCCC-CEEEEEEEEcCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL--HEWH--YGT--DRIKSKIEIDPATQMD-AGIYECYADNMY   81 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~--~~~~--~~~--~~~~~~l~i~~~~~~~-~g~y~c~~~~~~   81 (97)
                      +..+.|.|.+.++.+.  .+.|+++|..+........  ....  ...  ....+.|.+....-.+ ...|.|.+....
T Consensus        20 ~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          20 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             CCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEECC
Confidence            4678999999987644  4889999987754221100  0000  001  1224556665544334 447999998653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0014  Score=29.77  Aligned_cols=73  Identities=12%  Similarity=0.188  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEecccCCC---eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          11 LGHKIVFICMAKGKPRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      .++.+.|.|.+.++.++   .+.|.+++........ .............+.|.+....-.....|.|.+.......
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~-~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF-PPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC-CCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEe-eeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence            35678999999996433   3567776654432110 0000000112234567776665555678999998865543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00065  Score=30.99  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=38.4

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD   84 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~   84 (97)
                      +..+.|.|.+.++.+.  .+.|.+++....... ..............+.|.+..-.. ....|.|.+.+..+..
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t-~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEE-CCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            5678999999887655  488977664321100 000000001112244566654432 2356999999876554

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0039  Score=27.55  Aligned_cols=62  Identities=16%  Similarity=0.409  Sum_probs=39.5

Q ss_pred             EEcCCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCC-CCCEEEEEEEEc
Q psy9150           9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQ-MDAGIYECYADN   79 (97)
Q Consensus         9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~c~~~~   79 (97)
                      -.-|..+.|.|+..  ....|.|.+++..+.....- ...       .....|.+..-.. +++|.|.|.+..
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~-------~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIG-------SDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEE-------EETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccCCCcccccc-------cccceEEecccCccccCceEEEEcCC
Confidence            45689999999742  45679999988877643210 000       0022456666554 579999998754

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0033  Score=26.77  Aligned_cols=59  Identities=19%  Similarity=0.449  Sum_probs=29.4

Q ss_pred             CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          13 HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      +.+.|.|.      ..|.|++++..+.....              .++-+-..-....|.|.|...........++.|.
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~~~~~~~--------------k~lnLG~~~~DPRG~Y~C~~~e~~~~k~~~lQVy   68 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVGTLLSDI--------------TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVH   68 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCCEEEGGG--------------TEEEEEEGGGCCEEEEEEC--------CEEEEEE
T ss_pred             CeEEEEcc------CeeEEecCCcccccCCc--------------cEeecCCcccCCCcceEeCCcccccccCccEEEE
Confidence            47888994      46999987543221111              1233344445667999996543333334444443

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.012  Score=25.77  Aligned_cols=51  Identities=20%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150          13 HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus        13 ~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ..+.|.|..   ....+.|++++..+......            ..++-+-.......|.|.|...
T Consensus        23 GsV~L~Cn~---~~k~i~W~kdg~~i~~~~~~------------~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          23 GSVLLTCGL---TDKTIKWLKDGSIISPLNAT------------KNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             CEEEEECSS---SCSCEEEEETTEECCCSSCC------------SSCCEEEETTSCCEEEEEEEES
T ss_pred             CeEEEEeCC---CCcEEEEecCCceecccccc------------cceeecCCcccCCCcceEcCCC
Confidence            468888954   34689999999876532110            1134444455566899999643

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.012  Score=25.73  Aligned_cols=61  Identities=21%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD   91 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~   91 (97)
                      +..+.|.|...-  .-.|.|.+++..-....              ..++.+.--...+.|.|+|+-   .|.......+-
T Consensus        21 ~~~V~L~C~t~e--E~~I~W~kd~~se~~~~--------------GntltV~VkE~~~aGnYTChk---~g~~Lnht~lL   81 (87)
T d3d85d1          21 GEMVVLTCDTPE--EDGITWTLDQSSEVLGS--------------GKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLL   81 (87)
T ss_dssp             CEEEEEECSSSC--CSSCEEEETTCCCCCEE--------------SSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEE
T ss_pred             ccEEEEecCCCc--ccccEEeeCCccccccC--------------CCEEEEEEEeccCCcceeEeC---CCcEeeeEEEE
Confidence            346778885422  23699999875411111              113444433446789999972   35554444333

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0088  Score=25.92  Aligned_cols=52  Identities=27%  Similarity=0.500  Sum_probs=32.0

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      ...+.|.|..   ....+.|++++..+......            ..++-+-..-....|.|.|...
T Consensus        17 dg~V~L~Cn~---~~k~i~W~kdg~~i~~~~~~------------~ktlnLG~~~~DPRG~Y~C~~~   68 (81)
T d1sy6a1          17 DGSVLLTCDA---EAKNITWFKDGKMIGFLTED------------KKKWNLGSNAKDPRGMYQCKGS   68 (81)
T ss_dssp             SSEEEEEECS---CSSEEEEEETTEEEEEEESS------------CCCEEEEEGGGCCEEEEEEESS
T ss_pred             CCeEEEEeCC---CCcEEEEecCCeEeecccCC------------cceeecCCcccCCCcceEcCCC
Confidence            3468889953   45689999999765421000            1234444445566799999643

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.99  E-value=0.0063  Score=27.98  Aligned_cols=66  Identities=15%  Similarity=0.125  Sum_probs=34.6

Q ss_pred             CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCC---CEEEEEEEEcCCC
Q psy9150          12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD---AGIYECYADNMYN   82 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~---~g~y~c~~~~~~g   82 (97)
                      +..+.|.|.+.++.+.  .|.|.+++....    ... ......+..........+..++   ...|.|.+.+...
T Consensus        27 ~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~----~~~-~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   97 (111)
T d1pfca_          27 KKKVSLTCMITGFYPADINVEWDSSEPSDY----KNT-PPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEAL   97 (111)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSSCCTTTE----EEE-EEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETTT
T ss_pred             CCceEEEEEEEeeECCCcEEEEeeCCCCCc----EEc-ccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            4567899999887544  588987763211    111 1111111111122223334443   4569999988643

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=7.3e-05  Score=34.18  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=35.4

Q ss_pred             cCCeEEEEEEecccC-C--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCC---CCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKP-R--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM---DAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~-~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~---~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.++. +  ..|.|.+++...........    ...+.. .......+...   ....|.|.+.....
T Consensus        17 ~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~----~~~gt~-s~~S~L~v~~~~W~~g~~ftC~V~H~~~   89 (101)
T d1ow0a1          17 LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPER----DLCGCY-SVSSVLPGCAEPWNHGKTFTCTAAYPES   89 (101)
T ss_dssp             HCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCC----CSTTCC-CEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred             cCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEE----CCCCCE-EEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence            466789999998863 3  25999987643221111000    011111 11222334433   25689999987654

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.023  Score=25.69  Aligned_cols=67  Identities=13%  Similarity=0.212  Sum_probs=44.9

Q ss_pred             ceeeEEEcCCeEEEEEEeccc-------CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150           4 HFDYEYVLGHKIVFICMAKGK-------PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus         4 ~~~~~~~~g~~~~l~c~~~~~-------~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      +++..+..|+++...|.....       ....+.|..++..++...+....     ..  ..++.+.++..... .-.|.
T Consensus        10 p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~qy~~ln-----~T--~~Svtl~~l~~~~a-~L~C~   81 (100)
T d1i1ra1          10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN-----RT--ASSVTFTDIASLNI-QLTCN   81 (100)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEE-----TT--EEEEEECSCCCSEE-EEEEE
T ss_pred             cCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCchheEccC-----Cc--EEEEEEccccCCcc-eeEEE
Confidence            456678899999999999532       45689999999998865433321     11  34578888776544 44554


Q ss_pred             EE
Q psy9150          77 AD   78 (97)
Q Consensus        77 ~~   78 (97)
                      ..
T Consensus        82 ~l   83 (100)
T d1i1ra1          82 IL   83 (100)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=4.8e-05  Score=35.69  Aligned_cols=72  Identities=18%  Similarity=0.262  Sum_probs=36.7

Q ss_pred             cCCeEEEEEEecccCCC----eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150          11 LGHKIVFICMAKGKPRP----HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN   82 (97)
Q Consensus        11 ~g~~~~l~c~~~~~~~p----~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g   82 (97)
                      .+..+.|.|.+.++.+.    .+.|.+++......................+.|.+..-.-.....|+|.+.+...
T Consensus        28 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~~l  103 (116)
T d1igyb3          28 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  103 (116)
T ss_dssp             TTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             cCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            46778999999886542    3567877765432111100000001111233454443322235579999887553

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.036  Score=24.88  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150          57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS   93 (97)
Q Consensus        57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~   93 (97)
                      +.+|.|..+.+.|.|.|...+.+..|...-.-.+.+.
T Consensus        62 nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~Lk   98 (101)
T d1hnfa1          62 NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK   98 (101)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEE
Confidence            4589999999999999999999999976444333433

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=93.94  E-value=0.071  Score=22.09  Aligned_cols=45  Identities=16%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150          12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY   76 (97)
Q Consensus        12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~   76 (97)
                      .+.+.+.|.      ..|.|++++..+.....              .++-+-..-....|.|.|.
T Consensus         8 edkV~L~Cn------~sI~w~k~~~~~~~~~~--------------ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           8 EDKVILKCN------SSITLLQGTAGQEVSDN--------------KTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             TTEEEEECS------SSCEEEEECCCCBSSSS--------------SBBCCBCSTTCCEEEEECC
T ss_pred             CceEEEEcc------CeEEEccCccccccCCC--------------cEEeCCCcccCCCcceECC
Confidence            458889994      34899987543332211              1233344445667999994

>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.72  E-value=0.72  Score=20.42  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             eeeEEEcCCeEEEEEEec-----ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150           5 FDYEYVLGHKIVFICMAK-----GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD   78 (97)
Q Consensus         5 ~~~~~~~g~~~~l~c~~~-----~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~   78 (97)
                      +...+..|+++.-.|...     ....+.|.|..++..++......     .......++..+..+.... ...+|.+.
T Consensus         7 ~spVV~lGsp~tAsC~I~e~C~~~~~a~~I~Wkl~~~~vP~~rq~~-----~~~~~~~SsVt~p~l~~~~-a~LtC~v~   79 (94)
T d2d9qb1           7 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQR-----LSDGTQESIITLPHLNHTQ-AFLSCSLN   79 (94)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECC-----CSSSCCCEEEEESCCCSSE-EEEEEEEE
T ss_pred             CCceEeCCCCEEEEEEECccccCcCCcceEEEEECCEECCCcceeE-----EecCcEEEEEEecccccCc-ccEEEEEE
Confidence            345678899999999873     22466899998887776422111     1222335677888777554 34556543