Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 77
cd06425 233
cd06425, M1P_guanylylT_B_like_N, N-terminal domain
9e-43 COG1208 358
COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph
3e-29 cd04181 217
cd04181, NTP_transferase, NTP_transferases catalyz
1e-27 cd06422 221
cd06422, NTP_transferase_like_1, NTP_transferase_l
4e-24 cd04189 236
cd04189, G1P_TT_long, G1P_TT_long represents the l
1e-23 TIGR03992 393
TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph
1e-22 COG1209 286
COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel
6e-21 cd06915 223
cd06915, NTP_transferase_WcbM_like, WcbM_like is a
9e-21 cd02523 229
cd02523, PC_cytidylyltransferase, Phosphocholine c
2e-20 TIGR01208 353
TIGR01208, rmlA_long, glucose-1-phosphate thymidyl
4e-20 pfam00483 247
pfam00483, NTP_transferase, Nucleotidyl transferas
1e-18 cd06426 220
cd06426, NTP_transferase_like_2, NTP_trnasferase_l
7e-18 COG4750 231
COG4750, LicC, CTP:phosphocholine cytidylyltransfe
3e-17 cd02507 216
cd02507, eIF-2B_gamma_N_like, The N-terminal of eI
2e-15 COG1213 239
COG1213, COG1213, Predicted sugar nucleotidyltrans
3e-14 cd06428 257
cd06428, M1P_guanylylT_A_like_N, N-terminal domain
5e-14 cd02524 253
cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr
2e-12 TIGR02623 254
TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti
1e-11 cd02538 240
cd02538, G1P_TT_short, G1P_TT_short is the short f
1e-11 cd04198 214
cd04198, eIF-2B_gamma_N, The N-terminal domain of
4e-11 cd04197 217
cd04197, eIF-2B_epsilon_N, The N-terminal domain o
6e-11 cd02541 267
cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca
1e-10 cd02540 229
cd02540, GT2_GlmU_N_bac, N-terminal domain of bact
6e-09 COG1207 460
COG1207, GlmU, N-acetylglucosamine-1-phosphate uri
2e-08 TIGR01099 260
TIGR01099, galU, UTP-glucose-1-phosphate uridylylt
2e-08 COG1210 291
COG1210, GalU, UDP-glucose pyrophosphorylase [Cell
5e-08 cd04182 186
cd04182, GT_2_like_f, GT_2_like_f is a subfamily o
5e-08 TIGR01207 286
TIGR01207, rmlA, glucose-1-phosphate thymidylyltra
6e-08 PRK15480 292
PRK15480, PRK15480, glucose-1-phosphate thymidylyl
6e-08 TIGR01173 451
TIGR01173, glmU, UDP-N-acetylglucosamine diphospho
6e-08 COG2266 177
COG2266, COG2266, GTP:adenosylcobinamide-phosphate
6e-08 PRK14354 458
PRK14354, glmU, bifunctional N-acetylglucosamine-1
1e-07 TIGR01105 297
TIGR01105, galF, UTP-glucose-1-phosphate uridylylt
5e-07 COG0448 393
COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb
5e-07 TIGR02091 361
TIGR02091, glgC, glucose-1-phosphate adenylyltrans
7e-07 PRK10122 297
PRK10122, PRK10122, GalU regulator GalF; Provision
8e-07 PRK02862 429
PRK02862, glgC, glucose-1-phosphate adenylyltransf
9e-07 pfam12804 178
pfam12804, NTP_transf_3, MobA-like NTP transferase
1e-06 PRK00725 425
PRK00725, glgC, glucose-1-phosphate adenylyltransf
1e-06 cd02508 200
cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory
2e-06 cd02516 218
cd02516, CDP-ME_synthetase, CDP-ME synthetase is i
3e-06 PRK14355 459
PRK14355, glmU, bifunctional N-acetylglucosamine-1
4e-06 PRK00155 227
PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat
5e-06 PRK14353 446
PRK14353, glmU, bifunctional N-acetylglucosamine-1
5e-06 PRK13389 302
PRK13389, PRK13389, UTP--glucose-1-phosphate uridy
6e-06 TIGR00453 217
TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha
7e-06 PRK05293 380
PRK05293, glgC, glucose-1-phosphate adenylyltransf
7e-06 PRK00844 407
PRK00844, glgC, glucose-1-phosphate adenylyltransf
9e-06 COG2068 199
COG2068, COG2068, Uncharacterized MobA-related pro
1e-05 COG1211 230
COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith
2e-05 PLN02241 436
PLN02241, PLN02241, glucose-1-phosphate adenylyltr
3e-05 cd02509 274
cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guan
3e-05 COG0746 192
COG0746, MobA, Molybdopterin-guanine dinucleotide
4e-05 TIGR00454 175
TIGR00454, TIGR00454, TIGR00454 family protein
6e-05 cd02503 181
cd02503, MobA, MobA catalyzes the formation of mol
9e-05 PRK14356 456
PRK14356, glmU, bifunctional N-acetylglucosamine-1
1e-04 PRK00317 193
PRK00317, mobA, molybdopterin-guanine dinucleotide
2e-04 PRK14358 481
PRK14358, glmU, bifunctional N-acetylglucosamine-1
4e-04 TIGR03310 188
TIGR03310, matur_ygfJ, molybdenum hydroxylase acce
9e-04 PRK09451 456
PRK09451, glmU, bifunctional N-acetylglucosamine-1
0.001 PRK14352 482
PRK14352, glmU, bifunctional N-acetylglucosamine-1
0.002 PRK05450 245
PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt
0.002 PRK14359 430
PRK14359, glmU, bifunctional N-acetylglucosamine-1
0.003
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins
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Score = 137 bits (348), Expect = 9e-43
Identities = 49/64 (76%), Positives = 55/64 (85%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MKALILVGGYGTRLRPLTL+ PKPLVEF NKPM+ HQIEAL +AGV+E+ILAV+YR E M
Sbjct: 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 71 EDEL 74
L
Sbjct: 61 VPFL 64
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
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Score = 105 bits (265), Expect = 3e-29
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
MKA+IL GGYGTRLRPLT RPKPL+ A KP++ + +EAL AGV E++L V Y EQ
Sbjct: 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQ 60
Query: 70 MEDELL 75
+E+
Sbjct: 61 IEEYFG 66
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars
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Score = 98.4 bits (246), Expect = 1e-27
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G GTRLRPLT +RPKPL+ A KP+L + IE L AG+ E+IL V Y EQ+E+
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 73 EL 74
Sbjct: 61 YF 62
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family
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Score = 89.6 bits (223), Expect = 4e-24
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQME 71
KA+IL G GTR+RPLT +RPKPLV A KP++ H ++ L AG+R +++ + A+Q+E
Sbjct: 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 72 DEL 74
L
Sbjct: 61 AHL 63
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase
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Score = 88.8 bits (221), Expect = 1e-23
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK LIL GG GTRLRPLT +RPK L+ A KP++ + IE L EAG+ ++ + V E++
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
Query: 71 EDEL 74
++ L
Sbjct: 61 KEAL 64
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
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Score = 88.4 bits (220), Expect = 1e-22
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MKA+IL G GTR+RPLT +RPKP++ A KP+L H IEAL +AG+ + + V Y E++
Sbjct: 1 MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60
Query: 71 ED 72
+
Sbjct: 61 RE 62
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
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Score = 82.6 bits (205), Expect = 6e-21
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK +IL GG GTRLRPLT PK L+ +KPM+ + +E L+ AG+R++++ V +
Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 71 EDELL 75
ELL
Sbjct: 61 FKELL 65
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases
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Score = 81.1 bits (201), Expect = 9e-21
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL GG GTRLR + PKPL A +P L + +E L G+ ++L+V Y AEQ+E+
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline
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Score = 80.4 bits (199), Expect = 2e-20
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G G+RLRPLT RPK L+E KP+L QIE L EAG+ ++++ Y+ EQ+E+
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 73 EL 74
L
Sbjct: 61 LL 62
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229
>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form
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Score = 81.3 bits (201), Expect = 4e-20
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65
KALIL G GTRLRPLT +RPK L+ ANKP+L + IE L EAG+ ++ + V
Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGP 54
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase
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Score = 76.1 bits (188), Expect = 1e-18
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQM 70
KA+IL GG GTRL PLT + KPLV +K PM+ + + L+ AG+RE I+ + +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 71 EDELL 75
E L
Sbjct: 61 VAEQL 65
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family
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Score = 73.3 bits (181), Expect = 7e-18
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
+I+ GG GTRLRPLT + PKP+++ KP+L I+ + G R ++V+Y AE +ED
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIED 60
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
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Score = 71.7 bits (176), Expect = 3e-17
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
M A+IL G G+R PLT S PK L++ +P++ QIE L EAG+ ++ + V Y EQ
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF 60
Query: 71 E 71
E
Sbjct: 61 E 61
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity
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Score = 66.5 bits (163), Expect = 2e-15
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
+A++L G+G+R PLT PK L+ AN P++ + +E L +AGV EV + ++ +
Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 71 EDELL 75
+ LL
Sbjct: 61 IEHLL 65
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
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Score = 63.9 bits (156), Expect = 3e-14
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVRE-VILAVSYRAEQ 69
MKA+IL G+G+RL P PK LVE + ++ IE L +AG+ E V++ YRA+
Sbjct: 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60
Query: 70 MEDEL 74
+E+ L
Sbjct: 61 VEEFL 65
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase
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Score = 63.8 bits (156), Expect = 5e-14
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 13 ALILVGG--YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVSYRAEQ 69
A+ILVGG GTR RPL+L PKPL A KPM+ H IEA + ++EV+L Y
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 70 MEDEL 74
D +
Sbjct: 61 FSDFI 65
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose
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Score = 59.5 bits (145), Expect = 2e-12
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+IL GG GTRL T +PKP+VE +P+L H ++ G + IL + Y+
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGH 56
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase
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Score = 57.5 bits (139), Expect = 1e-11
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQME 71
KA+IL GG GTR+ T RPKP+VE KP+L H ++ G+ + I+ Y+ ++
Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIK 60
Query: 72 D 72
+
Sbjct: 61 E 61
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase
Back Show alignment and domain information
Score = 57.2 bits (139), Expect = 1e-11
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK +IL GG GTRL PLT K L+ +KPM+ + + L+ AG+RE IL +S E +
Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIISTP-EDL 58
Query: 71 ED--ELL 75
ELL
Sbjct: 59 PLFKELL 65
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2
Back Show alignment and domain information
Score = 55.4 bits (134), Expect = 4e-11
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
+A+IL GG G+RL PLT + PK L+ ANKPM+ + ++ L +AG +VI+ V
Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVP 54
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2
Back Show alignment and domain information
Score = 54.9 bits (133), Expect = 6e-11
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A++L + R RPLT +P+ L+ AN P++ + +E L GV EV + ++Q+++
Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKE 62
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose
Back Show alignment and domain information
Score = 54.5 bits (132), Expect = 1e-10
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KA+I G GTR P T + PK ++ +KP++ + +E V AG+ ++I+ +
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60
Query: 71 ED 72
ED
Sbjct: 61 ED 62
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU
Back Show alignment and domain information
Score = 49.8 bits (120), Expect = 6e-09
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G GTR++ PK L A KPML H ++A G +++ V + AEQ++
Sbjct: 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKK 57
Query: 73 EL 74
L
Sbjct: 58 AL 59
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Score = 48.7 bits (117), Expect = 2e-08
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
++ A+IL G GTR++ PK L A KPML H I+A G ++++ V + AEQ
Sbjct: 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQ 58
Query: 70 MEDEL 74
+ + L
Sbjct: 59 VREAL 63
>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase
Back Show alignment and domain information
Score = 48.5 bits (116), Expect = 2e-08
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KA+I G GTR P T + PK ++ +KP++ + +E VEAG+ ++++ +
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
Query: 71 ED 72
ED
Sbjct: 61 ED 62
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260
>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Score = 47.5 bits (114), Expect = 5e-08
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 11 MKALILVGGYGTRLRPLTLSRPK---PLVEFANKPMLLHQIEALVEAGVREVILAVS 64
KA+I G GTR P T + PK P+V +KP++ + +E V AG+ E+++
Sbjct: 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVAAGIEEILIVTG 58
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function
Back Show alignment and domain information
Score = 46.8 bits (112), Expect = 5e-08
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G +R+ K L+ KP+L H ++A + AG+ VI+ + A+ +
Sbjct: 3 AIILAAGRSSRMG-----GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57
Query: 73 ELLLH 77
L
Sbjct: 58 ALAGL 62
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form
Back Show alignment and domain information
Score = 47.4 bits (113), Expect = 6e-08
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
K +IL GG GTRL P+T + K L+ +KPM+ + + L+ AG+R++++
Sbjct: 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILI 50
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Back Show alignment and domain information
Score = 47.0 bits (111), Expect = 6e-08
Identities = 20/50 (40%), Positives = 35/50 (70%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
K +IL GG GTRL P+T++ K L+ +KPM+ + + L+ AG+R++++
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILI 54
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
Back Show alignment and domain information
Score = 47.3 bits (113), Expect = 6e-08
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
+ +IL G GTR++ PK L A KPML H I+A G +++ + + AEQ+
Sbjct: 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 71 EDEL 74
L
Sbjct: 58 RKAL 61
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451
>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Back Show alignment and domain information
Score = 46.5 bits (111), Expect = 6e-08
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
M A+I+ GG GTR+ KPL+E KP++ +EAL V E+I+A+S
Sbjct: 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEAL-RKIVDEIIVAIS 49
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 46.4 bits (111), Expect = 1e-07
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
N A+IL G GTR++ PK L + KPM+ H ++++ +AG+ +++ V + AE
Sbjct: 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAE 57
Query: 69 QMEDEL 74
++++ L
Sbjct: 58 EVKEVL 63
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit
Back Show alignment and domain information
Score = 44.6 bits (105), Expect = 5e-07
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
N+KA+I V G G + P T + PK ++ +KPM+ + ++ +V AG++E++L
Sbjct: 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNA 62
Query: 70 MEDEL 74
+E+
Sbjct: 63 VENHF 67
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Score = 44.6 bits (106), Expect = 5e-07
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
N+ A+IL GG G+RL PLT R KP V F K
Sbjct: 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGK 36
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase
Back Show alignment and domain information
Score = 44.2 bits (105), Expect = 7e-07
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
A++L GG G+RL PLT R KP V F K
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGK 29
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional
Back Show alignment and domain information
Score = 44.1 bits (104), Expect = 8e-07
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
N+KA+I V G G + P T + PK ++ +KPM+ + ++ +V AG++E++L
Sbjct: 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVL 54
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Score = 43.7 bits (104), Expect = 9e-07
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 11 MK---ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
MK A+IL GG GTRL PLT R KP V A K
Sbjct: 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGK 34
>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain
Back Show alignment and domain information
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67
+IL GG +R+ K L+ KP+L ++ L A EV++ +
Sbjct: 1 GVILAGGRSSRMG-----GDKALLPLGGKPLLERVLDRLRPA-GDEVVVVTNRPE 49
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178
>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Score = 43.3 bits (103), Expect = 1e-06
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
ALIL GG G+RL+ LT R KP V F K
Sbjct: 18 ALILAGGRGSRLKELTDKRAKPAVYFGGK 46
>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch
Back Show alignment and domain information
Score = 42.5 bits (101), Expect = 2e-06
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
A+IL GG GTRL PLT R KP V F +
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGR 29
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production
Back Show alignment and domain information
Score = 42.1 bits (100), Expect = 3e-06
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
A+IL G G+R+ PK +E KP+L H +EA + + E+++ V
Sbjct: 3 AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVP 52
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 42.0 bits (99), Expect = 4e-06
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+N+ A+IL G GTR++ K + A +PM+ + A EAG ++L V ++AE
Sbjct: 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAE 58
Query: 69 QMEDEL 74
++ +
Sbjct: 59 KVREHF 64
>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Back Show alignment and domain information
Score = 41.7 bits (99), Expect = 5e-06
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
A+I G G+R+ RPK + KP+L H +EA + + E+I+ V
Sbjct: 6 AIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVP 55
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 41.8 bits (99), Expect = 5e-06
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G GTR++ S PK L A +PML H + A G V + V AE +
Sbjct: 8 AIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAA 64
Query: 73 EL 74
Sbjct: 65 AA 66
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Back Show alignment and domain information
Score = 41.4 bits (97), Expect = 6e-06
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
KA+I V G GTR+ P T + PK ++ +KP++ + + + AG+ E++L
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVL 59
>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Back Show alignment and domain information
Score = 41.1 bits (97), Expect = 7e-06
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
A+I G GTR PK +E +P+L H ++A + + EV++ VS
Sbjct: 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVS 51
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Score = 41.4 bits (98), Expect = 7e-06
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
M A+IL GG GTRL LT + KP V F K
Sbjct: 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFGGK 34
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Score = 41.0 bits (97), Expect = 9e-06
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEF 38
A++L GG G RL PLT R KP V F
Sbjct: 8 AIVLAGGEGKRLMPLTADRAKPAVPF 33
>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]
Back Show alignment and domain information
Score = 40.4 bits (95), Expect = 1e-05
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A++L G +R+ +PK L KP++ E + AG+ VI+ +R + +
Sbjct: 8 AVVLAAGRSSRMG-----QPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVE 62
Query: 73 ELL 75
LL
Sbjct: 63 ALL 65
>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Back Show alignment and domain information
Score = 39.9 bits (94), Expect = 2e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQME 71
A+IL G+G+R+ PK +E +P+L H +EA +E+ + E+++ VS E
Sbjct: 7 AVILAAGFGSRMG---NPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVS--PEDDP 61
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase
Back Show alignment and domain information
Score = 39.5 bits (93), Expect = 3e-05
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFA 39
P ++ A+IL GG GTRL PLT R KP V
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIG 32
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose
Back Show alignment and domain information
Score = 39.5 bits (93), Expect = 3e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 11 MKALILVGGYGTRLRPLTLSR---PKPLVE-FANKPMLLHQIEALVEAGVREVILAV--- 63
+ +IL GG GTRL P LSR PK ++ F +K +L ++ L + IL V
Sbjct: 1 IYPVILAGGSGTRLWP--LSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNE 58
Query: 64 SYR---AEQMEDEL 74
YR EQ+ + L
Sbjct: 59 EYRFLVREQLPEGL 72
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274
>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Back Show alignment and domain information
Score = 39.2 bits (92), Expect = 4e-05
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
M +IL GG R+R K L+ +P++ H I+ L VI A
Sbjct: 1 MMTPMTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRLRPQVDVVVISANR 52
>gnl|CDD|200016 TIGR00454, TIGR00454, TIGR00454 family protein
Back Show alignment and domain information
Score = 38.4 bits (89), Expect = 6e-05
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
ALI+ GG GTRL + KPL+E + ++ H + L+++ V +I+A S + E+
Sbjct: 2 ALIMAGGKGTRLGGVE----KPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEE 57
Query: 73 EL 74
+
Sbjct: 58 YI 59
At this time this gene appears to be present only in Archea [Hypothetical proteins, Conserved]. Length = 175
>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide
Back Show alignment and domain information
Score = 37.9 bits (89), Expect = 9e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVI 60
+ +IL GG R+ K L+E KP+L H +E L VI
Sbjct: 1 ITGVILAGGKSRRM-----GGDKALLELGGKPLLEHVLERLKPLVDEVVI 45
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181
>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 37.8 bits (88), Expect = 1e-04
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQME 71
ALIL G GTR+ +PK L +PML AL V V +RA+ +
Sbjct: 8 ALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVR 63
>gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Back Show alignment and domain information
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
+ +IL GG R+ K L E KP++ H IE L V E+++
Sbjct: 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERL-APQVDEIVI 49
>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 36.5 bits (84), Expect = 4e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
+ +IL G GTR++ + PK L A +PM+ ++A + G R++++ + AEQ+
Sbjct: 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQV 64
Query: 71 EDEL 74
E L
Sbjct: 65 EAAL 68
>gnl|CDD|234166 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein, YgfJ family
Back Show alignment and domain information
Score = 35.4 bits (82), Expect = 9e-04
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
A+IL G +R+ + K L+ + K +L H ++ + EVIL + + A+
Sbjct: 2 AIILAAGLSSRMG-----QNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEAD 52
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. Length = 188
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 35.4 bits (82), Expect = 0.001
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
M +IL G GTR+ PK L A KPM+ H I+A E G + V L + + +
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLL 62
Query: 71 EDEL 74
+ L
Sbjct: 63 KQTL 66
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 34.1 bits (79), Expect = 0.002
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
++L G GTR+R T PK L A + ML H + A + +++ V + E+
Sbjct: 7 VIVLAAGAGTRMRSDT---PKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRER 60
>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Back Show alignment and domain information
Score = 34.3 bits (80), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPL + KPM++ E +AG V++A
Sbjct: 19 KPLADIGGKPMIVRVYERASKAGADRVVVA 48
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Score = 33.8 bits (78), Expect = 0.003
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 14 LILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIE 49
+IL G GTR++ S PK L KPML + ++
Sbjct: 6 IILAAGKGTRMKS---SLPKVLHTICGKPMLFYILK 38
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
77
TIGR01105 297
galF UTP-glucose-1-phosphate uridylyltransferase,
99.83 cd04197 217
eIF-2B_epsilon_N The N-terminal domain of epsilon
99.82 PRK10122 297
GalU regulator GalF; Provisional
99.81 PRK05293 380
glgC glucose-1-phosphate adenylyltransferase; Prov
99.81 PRK00844 407
glgC glucose-1-phosphate adenylyltransferase; Prov
99.81 COG1208 358
GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas
99.79 TIGR01099 260
galU UTP-glucose-1-phosphate uridylyltransferase.
99.79 cd02541 267
UGPase_prokaryotic Prokaryotic UGPase catalyses th
99.79 cd06422 221
NTP_transferase_like_1 NTP_transferase_like_1 is a
99.79 cd02508 200
ADP_Glucose_PP ADP-glucose pyrophosphorylase is in
99.78 cd06425 233
M1P_guanylylT_B_like_N N-terminal domain of the M1
99.78 PF00483 248
NTP_transferase: Nucleotidyl transferase This Pros
99.77 cd04189 236
G1P_TT_long G1P_TT_long represents the long form o
99.76 PRK02862 429
glgC glucose-1-phosphate adenylyltransferase; Prov
99.76 TIGR02623 254
G1P_cyt_trans glucose-1-phosphate cytidylyltransfe
99.76 cd02538 240
G1P_TT_short G1P_TT_short is the short form of glu
99.76 cd04198 214
eIF-2B_gamma_N The N-terminal domain of gamma subu
99.76 cd02524 253
G1P_cytidylyltransferase G1P_cytidylyltransferase
99.76 PRK00725 425
glgC glucose-1-phosphate adenylyltransferase; Prov
99.76 cd02507 216
eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma
99.76 PRK15480 292
glucose-1-phosphate thymidylyltransferase RfbA; Pr
99.76 cd06426 220
NTP_transferase_like_2 NTP_trnasferase_like_2 is a
99.76 COG4750 231
LicC CTP:phosphocholine cytidylyltransferase invol
99.75 PLN02241 436
glucose-1-phosphate adenylyltransferase
99.75 cd06915 223
NTP_transferase_WcbM_like WcbM_like is a subfamily
99.75 cd02523 229
PC_cytidylyltransferase Phosphocholine cytidylyltr
99.75 TIGR02092 369
glgD glucose-1-phosphate adenylyltransferase, GlgD
99.74 cd04181 217
NTP_transferase NTP_transferases catalyze the tran
99.74 PRK13389 302
UTP--glucose-1-phosphate uridylyltransferase subun
99.73 cd06428 257
M1P_guanylylT_A_like_N N-terminal domain of M1P_gu
99.73 TIGR01207 286
rmlA glucose-1-phosphate thymidylyltransferase, sh
99.72 TIGR02091 361
glgC glucose-1-phosphate adenylyltransferase. This
99.72 TIGR01208 353
rmlA_long glucose-1-phosphate thymidylylransferase
99.7 COG1209 286
RfbA dTDP-glucose pyrophosphorylase [Cell envelope
99.7 COG1213 239
Predicted sugar nucleotidyltransferases [Cell enve
99.69 COG1210 291
GalU UDP-glucose pyrophosphorylase [Cell envelope
99.68 cd04183 231
GT2_BcE_like GT2_BcbE_like is likely involved in t
99.65 KOG1322|consensus 371
99.65 cd02509 274
GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf
99.64 cd02540 229
GT2_GlmU_N_bac N-terminal domain of bacterial GlmU
99.64 TIGR00454 183
conserved hypothetical protein TIGR00454. At this
99.62 PF12804 160
NTP_transf_3: MobA-like NTP transferase domain; PD
99.61 PRK14356 456
glmU bifunctional N-acetylglucosamine-1-phosphate
99.61 PRK14358 481
glmU bifunctional N-acetylglucosamine-1-phosphate
99.6 TIGR01173 451
glmU UDP-N-acetylglucosamine diphosphorylase/gluco
99.59 PRK14353 446
glmU bifunctional N-acetylglucosamine-1-phosphate
99.59 PRK14354 458
glmU bifunctional N-acetylglucosamine-1-phosphate
99.59 PRK14359 430
glmU bifunctional N-acetylglucosamine-1-phosphate
99.57 PRK09451 456
glmU bifunctional N-acetylglucosamine-1-phosphate
99.57 COG1207 460
GlmU N-acetylglucosamine-1-phosphate uridyltransfe
99.56 PRK14355 459
glmU bifunctional N-acetylglucosamine-1-phosphate
99.56 PRK14352 482
glmU bifunctional N-acetylglucosamine-1-phosphate
99.56 PF01128 221
IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly
99.56 PLN02728 252
2-C-methyl-D-erythritol 4-phosphate cytidylyltrans
99.55 cd04182 186
GT_2_like_f GT_2_like_f is a subfamily of the glyc
99.55 PRK14360 450
glmU bifunctional N-acetylglucosamine-1-phosphate
99.54 TIGR01479 468
GMP_PMI mannose-1-phosphate guanylyltransferase/ma
99.52 PRK00155 227
ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl
99.52 TIGR03310 188
matur_ygfJ molybdenum hydroxylase accessory protei
99.51 COG1211 230
IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt
99.51 PRK00317 193
mobA molybdopterin-guanine dinucleotide biosynthes
99.51 COG0448 393
GlgC ADP-glucose pyrophosphorylase [Carbohydrate t
99.51 TIGR00453 217
ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl
99.49 PRK13385 230
2-C-methyl-D-erythritol 4-phosphate cytidylyltrans
99.48 PRK09382 378
ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp
99.48 cd02516 218
CDP-ME_synthetase CDP-ME synthetase is involved in
99.47 KOG1462|consensus 433
99.47 cd02503 181
MobA MobA catalyzes the formation of molybdopterin
99.47 TIGR03202 190
pucB xanthine dehydrogenase accessory protein pucB
99.47 PRK14357 448
glmU bifunctional N-acetylglucosamine-1-phosphate
99.46 COG0836 333
{ManC} Mannose-1-phosphate guanylyltransferase [Ce
99.45 PRK02726 200
molybdopterin-guanine dinucleotide biosynthesis pr
99.45 PRK05450 245
3-deoxy-manno-octulosonate cytidylyltransferase; P
99.44 COG2266 177
GTP:adenosylcobinamide-phosphate guanylyltransfera
99.42 COG2068 199
Uncharacterized MobA-related protein [General func
99.42 PRK15460 478
cpsB mannose-1-phosphate guanyltransferase; Provis
99.42 PRK13368 238
3-deoxy-manno-octulosonate cytidylyltransferase; P
99.42 cd02517 239
CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th
99.41 PRK00560 196
molybdopterin-guanine dinucleotide biosynthesis pr
99.41 TIGR02665 186
molyb_mobA molybdopterin-guanine dinucleotide bios
99.4 KOG1461|consensus 673
99.38 KOG1460|consensus 407
99.36 TIGR00466 238
kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe
99.35 PRK14489 366
putative bifunctional molybdopterin-guanine dinucl
99.33 cd02513 223
CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-
99.31 PRK14490 369
putative bifunctional molybdopterin-guanine dinucl
99.3 cd02518 233
GT2_SpsF SpsF is a glycosyltrnasferase implicated
99.3 PLN02917 293
CMP-KDO synthetase
99.27 PRK14500 346
putative bifunctional molybdopterin-guanine dinucl
99.19 COG0746 192
MobA Molybdopterin-guanine dinucleotide biosynthes
99.19 cd04180 266
UGPase_euk_like Eukaryotic UGPase-like includes UD
99.16 TIGR03584 222
PseF pseudaminic acid CMP-transferase. The sequenc
99.08 PF02348 217
CTP_transf_3: Cytidylyltransferase; InterPro: IPR0
99.03 PTZ00339 482
UDP-N-acetylglucosamine pyrophosphorylase; Provisi
98.99 cd04193 323
UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala
98.92 COG1212 247
KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase
98.87 COG1083 228
NeuA CMP-N-acetylneuraminic acid synthetase [Cell
98.56 COG1861 241
SpsF Spore coat polysaccharide biosynthesis protei
98.49 cd00897 300
UGPase_euk Eukaryotic UGPase catalyses the synthes
98.36 cd06424 315
UGGPase UGGPase catalyzes the synthesis of UDP-Glu
98.31 PF01704 420
UDPGP: UTP--glucose-1-phosphate uridylyltransferas
98.16 PLN02474 469
UTP--glucose-1-phosphate uridylyltransferase
98.06 PLN02435 493
probable UDP-N-acetylglucosamine pyrophosphorylase
97.98 PLN02830 615
UDP-sugar pyrophosphorylase
97.94 COG4284 472
UDP-glucose pyrophosphorylase [Carbohydrate transp
97.81 PRK00576 178
molybdopterin-guanine dinucleotide biosynthesis pr
97.53 KOG2388|consensus 477
96.14 KOG2638|consensus 498
89.4 TIGR03552 195
F420_cofC 2-phospho-L-lactate guanylyltransferase
86.49 PF05060 356
MGAT2: N-acetylglucosaminyltransferase II (MGAT2);
80.19
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit
Back Hide alignment and domain information
Probab=99.83 E-value=2.5e-20 Score=121.37 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++++||||||.|+||+|+|...||+|+|++|+|+|+|+++.+.++|+++|+|++++..+.+.+++.
T Consensus 2 ~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~ 68 (297)
T TIGR01105 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred CceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999999999999999899998874
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2
Back Show alignment and domain information
Probab=99.82 E-value=6.5e-20 Score=114.16 Aligned_cols=66 Identities=29% Similarity=0.524 Sum_probs=62.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++|||+|||.|+|++|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+++
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~ 66 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEK 66 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhh
Confidence 479999999999999999999999999999999999999999999999999999888999999864
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
>PRK10122 GalU regulator GalF; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=1.2e-19 Score=118.04 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++.+||+|||.|+||+|+|...||+|+|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~ 68 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999998884
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=9e-20 Score=121.06 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++++.+||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+.+.+|++
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~ 69 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIG 69 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHh
Confidence 3568999999999999999999999999999999 8999999999999999999999999999999884
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=1.3e-19 Score=121.72 Aligned_cols=69 Identities=28% Similarity=0.527 Sum_probs=65.5
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++.++.|||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+++.+|+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~ 71 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHIS 71 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHH
Confidence 45679999999999999999999999999999998 9999999999999999999999999999999985
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.79 E-value=3.6e-19 Score=118.35 Aligned_cols=67 Identities=55% Similarity=0.848 Sum_probs=63.9
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
.++|||||||.|+||+|+|...||+|+|++|+|+|+|+++.|.+.|++++++++++..+.+.+++..
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d 67 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD 67 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999999999999875
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase
Back Show alignment and domain information
Probab=99.79 E-value=6e-19 Score=111.95 Aligned_cols=65 Identities=31% Similarity=0.542 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~ 65 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFD 65 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999899988875
Built to distinquish between the highly similar genes galU and galF
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose
Back Show alignment and domain information
Probab=99.79 E-value=6.2e-19 Score=112.34 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=61.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 65 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFD 65 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhC
Confidence 47999999999999999999999999999999999999999999999999999999888888874
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family
Back Show alignment and domain information
Probab=99.79 E-value=7.7e-19 Score=109.15 Aligned_cols=65 Identities=46% Similarity=0.751 Sum_probs=61.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+++.+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999999999988999988753
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch
Back Show alignment and domain information
Probab=99.78 E-value=5.2e-19 Score=108.88 Aligned_cols=63 Identities=38% Similarity=0.680 Sum_probs=60.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++++|++++..+++.+++.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHh
Confidence 58999999999999999999999999998 9999999999999999999999999899998875
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins
Back Show alignment and domain information
Probab=99.78 E-value=9.4e-19 Score=109.67 Aligned_cols=65 Identities=75% Similarity=1.125 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|++||+|||.|+||+|+|.+.||+++|++|+|+|+|+++++.++++++|+|++++..+.+.+++.
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~ 65 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK 65 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999998888888875
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry
Back Show alignment and domain information
Probab=99.77 E-value=1.7e-18 Score=108.73 Aligned_cols=65 Identities=46% Similarity=0.779 Sum_probs=58.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeE-EEEccCCHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREV-ILAVSYRAEQMEDELLL 76 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~i-vvv~~~~~~~~~~~~~~ 76 (77)
++||||||.|+||+|+|...||+|+++.|+ |||+|+++++.++|++++ +|++++..+.+.++++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~ 67 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS 67 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc
Confidence 589999999999999999999999999999 999999999999999995 55555778889888864
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase
Back Show alignment and domain information
Probab=99.76 E-value=3e-18 Score=107.16 Aligned_cols=66 Identities=47% Similarity=0.728 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
|++||+|||.|+||+|+|...||++++++|+|+|+|+++++.++++++++|++++..+.+.+++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~ 66 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD 66 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc
Confidence 579999999999999999999999999999999999999999999999999999988999888753
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.76 E-value=1.3e-18 Score=117.63 Aligned_cols=67 Identities=30% Similarity=0.518 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++.|||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~ 69 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHIS 69 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHh
Confidence 368999999999999999999999999999999 9999999999999999999999998899999885
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.76 E-value=3.1e-18 Score=109.05 Aligned_cols=64 Identities=36% Similarity=0.673 Sum_probs=60.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++||+|||.|+||+|+|...||+|+|++|+|+|+|+++++.++|+++|+|++++..+.+.+++.
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 64 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFA 64 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999988888888875
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase
Back Show alignment and domain information
Probab=99.76 E-value=3.4e-18 Score=107.56 Aligned_cols=65 Identities=37% Similarity=0.570 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC-HHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR-AEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~-~~~~~~~~~ 75 (77)
|.+||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|++++++. .+.+.+|+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~ 66 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG 66 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999988754 577888774
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2
Back Show alignment and domain information
Probab=99.76 E-value=3.8e-18 Score=106.17 Aligned_cols=65 Identities=40% Similarity=0.603 Sum_probs=58.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCH-HHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA-EQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~-~~~~~~~~ 75 (77)
+++||+|||.|+||+|+|...||+|+|++|+|+|+|+++++.++|+++|+|+++++. +.+.+++.
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~ 66 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLR 66 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999998643 55666654
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose
Back Show alignment and domain information
Probab=99.76 E-value=3.6e-18 Score=108.35 Aligned_cols=64 Identities=34% Similarity=0.642 Sum_probs=60.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+||+|||.|+||+|+|...||+|+|++|+|+|+|+++.+.++|+++|+|++++..+.+.+++++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~ 64 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLN 64 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999998999988853
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.76 E-value=2.4e-18 Score=116.24 Aligned_cols=67 Identities=31% Similarity=0.527 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCee-HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKP-MLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~-li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++.|||||||.|+||+|+|...||+|+|++|+| +|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~ 81 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQ 81 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHH
Confidence 5689999999999999999999999999999997 999999999999999999999999999999885
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity
Back Show alignment and domain information
Probab=99.76 E-value=5.5e-18 Score=105.66 Aligned_cols=65 Identities=35% Similarity=0.602 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||+|||.|+||.|+|...||+++|++|+|+|+|+++++.++|+++|+|+++++.+.+.+++.
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~ 65 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLL 65 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999998888887775
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Back Show alignment and domain information
Probab=99.76 E-value=5.2e-18 Score=110.30 Aligned_cols=67 Identities=31% Similarity=0.573 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc-CCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS-YRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~-~~~~~~~~~~~ 75 (77)
..+++||||||.|+||+|+|...||+|+|++|+|+|+|.++++..+|+++|+|++. +..+.+.+++.
T Consensus 2 ~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~ 69 (292)
T PRK15480 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG 69 (292)
T ss_pred CceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc
Confidence 35899999999999999999999999999999999999999999999999987765 45677888875
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family
Back Show alignment and domain information
Probab=99.76 E-value=2.8e-18 Score=106.26 Aligned_cols=63 Identities=41% Similarity=0.736 Sum_probs=59.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||||||.|+||+|+|.+.||+|+|++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~ 63 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFG 63 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHC
Confidence 589999999999999999999999999999999999999999999999999998888888864
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.75 E-value=1.4e-18 Score=107.04 Aligned_cols=60 Identities=43% Similarity=0.755 Sum_probs=56.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~ 70 (77)
+.|||+|||.||||.|+|...||+|+.+.|+|+|++.++.|.++|+++|+||+++-.+++
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F 60 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF 60 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH
Confidence 368999999999999999999999999999999999999999999999999999876665
>PLN02241 glucose-1-phosphate adenylyltransferase
Back Show alignment and domain information
Probab=99.75 E-value=2.5e-18 Score=116.43 Aligned_cols=69 Identities=28% Similarity=0.516 Sum_probs=64.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+.++++||||||.|+||+|+|..+||+++|++|+ |+|+|+++++.++|+++++|++++..+++.+|++.
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~ 70 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSR 70 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhc
Confidence 3568999999999999999999999999999996 99999999999999999999999999999999863
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases
Back Show alignment and domain information
Probab=99.75 E-value=5.4e-18 Score=104.60 Aligned_cols=63 Identities=43% Similarity=0.699 Sum_probs=59.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||||||.|+||+|+|...||++++++|+|+|+|+++++.++++++|+|++++..+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~ 63 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFG 63 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHc
Confidence 589999999999999999999999999999999999999999999999999988888888875
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline
Back Show alignment and domain information
Probab=99.75 E-value=5.9e-18 Score=105.65 Aligned_cols=64 Identities=48% Similarity=0.798 Sum_probs=60.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+++..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999988999888753
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit
Back Show alignment and domain information
Probab=99.74 E-value=1e-18 Score=115.69 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHH-HHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAE-QMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~-~~~~~~~ 75 (77)
++++||+|+|.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+ .+.+|+.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~ 69 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLG 69 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHh
Confidence 57899999999999999999999999999999 999999999999999999999998765 9999885
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars
Back Show alignment and domain information
Probab=99.74 E-value=6.6e-18 Score=103.98 Aligned_cols=64 Identities=53% Similarity=0.771 Sum_probs=60.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+||+|||.|+||+|+|...||++++++|+|+|+|+++++.++++++|+|++++..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcC
Confidence 5899999999999999999999999999999999999999999999999999888888888753
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Back Show alignment and domain information
Probab=99.73 E-value=1.9e-17 Score=108.04 Aligned_cols=66 Identities=29% Similarity=0.517 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
-+.+||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 8 ~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~ 73 (302)
T PRK13389 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFD 73 (302)
T ss_pred ceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHc
Confidence 478999999999999999999999999999999999999999999999999999998898998885
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase
Back Show alignment and domain information
Probab=99.73 E-value=1.4e-17 Score=105.85 Aligned_cols=63 Identities=48% Similarity=0.748 Sum_probs=59.5
Q ss_pred EEEEeCC--CCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh-cCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGG--YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG--~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~-~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+|||||| .|+||+|+|...||+++|++|+|+|+|+++++.+ +|+++|+|++++..+.+.+|+.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~ 66 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFIS 66 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH
Confidence 5899999 8999999999999999999999999999999999 6999999999988888988875
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form
Back Show alignment and domain information
Probab=99.72 E-value=2.8e-17 Score=106.57 Aligned_cols=64 Identities=33% Similarity=0.583 Sum_probs=58.1
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc-CCHHHHHHHHh
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS-YRAEQMEDELL 75 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~-~~~~~~~~~~~ 75 (77)
++||||||.|+||+|+|...||+|+|++|+|||+|+++++..+|+++|+|++. +..+.+.+++.
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg 65 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG 65 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999987775 56677787774
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase
Back Show alignment and domain information
Probab=99.72 E-value=5.2e-18 Score=111.94 Aligned_cols=63 Identities=30% Similarity=0.628 Sum_probs=59.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+.+.+++.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHH
Confidence 58999999999999999999999999999 8999999999999999999999998888888875
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form
Back Show alignment and domain information
Probab=99.70 E-value=6.1e-17 Score=106.78 Aligned_cols=64 Identities=48% Similarity=0.744 Sum_probs=60.7
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC-CHHHHHHHHh
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY-RAEQMEDELL 75 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~-~~~~~~~~~~ 75 (77)
++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.+++++++++++++ ..+.+.+++.
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~ 65 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVG 65 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999999998 8888988885
Alternate name: dTDP-D-glucose synthase
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.70 E-value=3.6e-17 Score=105.01 Aligned_cols=65 Identities=42% Similarity=0.677 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC-CHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY-RAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~-~~~~~~~~~~ 75 (77)
|++||||||.|||++|+|...||+|+|+.++|||.|.++.+..+|+++|.|++.+ +...+++++.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llG 66 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLG 66 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhc
Confidence 4689999999999999999999999999999999999999999999999888876 5677666654
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.69 E-value=9.5e-17 Score=101.24 Aligned_cols=65 Identities=40% Similarity=0.706 Sum_probs=58.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEc-cCCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAV-SYRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~-~~~~~~~~~~~~~ 76 (77)
..+.|||||||.|+||+| +.||+|+.++|+++|.|++++|.+.|+++++||+ ++..+.+..++.+
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~ 67 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK 67 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc
Confidence 347899999999999998 8999999999999999999999999999999999 6777877777754
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.68 E-value=9.6e-17 Score=103.17 Aligned_cols=69 Identities=29% Similarity=0.467 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++...|||+|||.|+||-|.|...||.++|+-++|+|+|+++.+.++|++++++|++.+...+.+||..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~ 70 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDT 70 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcC
Confidence 345789999999999999999999999999999999999999999999999999999998999999864
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule
Back Show alignment and domain information
Probab=99.65 E-value=2.8e-16 Score=98.08 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=50.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+||||||.|+||+|+|...||+|++++|+|+|+|+++.+.++|+++++++++.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~ 53 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRD 53 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEECh
Confidence 48999999999999999999999999999999999999999999999998864
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
>KOG1322|consensus
Back Show alignment and domain information
Probab=99.65 E-value=6e-16 Score=101.52 Aligned_cols=67 Identities=61% Similarity=1.091 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..+.++||.+|.|+|++|+|...||++.|++++|||++.+++|.++|+++|++.++++.+++..|+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~ 74 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLS 74 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999887766653
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose
Back Show alignment and domain information
Probab=99.64 E-value=8.4e-16 Score=99.01 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCCCCCCCCC-CCCcceeeeCC-eeHHHHHHHHHHhcC-CCeEEEEccCC-HHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTL-SRPKPLVEFAN-KPMLLHQIEALVEAG-VREVILAVSYR-AEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~-~~~K~ll~i~g-~~li~~~l~~l~~~~-~~~ivvv~~~~-~~~~~~~~~ 75 (77)
+.+||||||.|+||+|+|. ..||+|++++| +|+|+++++++.+.+ +++|+|+++++ .+.+.+++.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~ 69 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLP 69 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHh
Confidence 4789999999999999995 79999999998 999999999999985 99999999874 344555553
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU
Back Show alignment and domain information
Probab=99.64 E-value=8.9e-16 Score=95.43 Aligned_cols=60 Identities=38% Similarity=0.574 Sum_probs=55.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||+|||.|+||++ ..||+|++++|+|+|+|+++++.++++++++|+++++.+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~ 60 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALA 60 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhC
Confidence 58999999999986 6899999999999999999999999999999999988888887765
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
>TIGR00454 conserved hypothetical protein TIGR00454
Back Show alignment and domain information
Probab=99.62 E-value=3.2e-15 Score=91.72 Aligned_cols=61 Identities=34% Similarity=0.555 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|.+||+|||+|+||++ .||++++++|+|+|+|+++++.++++++++|+++++.+....++.
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~ 61 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYIN 61 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHh
Confidence 4689999999999953 689999999999999999999988899999999887777777765
At this time this gene appears to be present only in Archea
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B
Back Show alignment and domain information
Probab=99.61 E-value=2.4e-15 Score=89.33 Aligned_cols=55 Identities=35% Similarity=0.614 Sum_probs=48.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+||||||.|+|| +.||++++++|+|||+++++.+.+.++++|+|++++ +.+.+++
T Consensus 1 ~vILa~G~s~Rm-----g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~ 55 (160)
T PF12804_consen 1 AVILAAGKSSRM-----GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYL 55 (160)
T ss_dssp EEEEESSSCGGG-----TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHH
T ss_pred CEEECCcCcccC-----CCCccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHH
Confidence 699999999999 459999999999999999999999999999999988 4454444
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.61 E-value=2.8e-15 Score=101.51 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=58.3
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|...+.+||||||.|+||+. ..||+|++++|+|+|+|+++++.+.++++++|++++..+.+.+++.
T Consensus 2 ~~~~~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~ 67 (456)
T PRK14356 2 MASTTGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP 67 (456)
T ss_pred CCcceeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc
Confidence 34468999999999999974 7899999999999999999999999889999999888787777663
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.60 E-value=5.4e-15 Score=101.32 Aligned_cols=64 Identities=31% Similarity=0.535 Sum_probs=59.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++.+||||||.|+||++ ..||+|+|++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~ 69 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ 69 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc
Confidence 568999999999999986 6799999999999999999999999999999999988888888774
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
Back Show alignment and domain information
Probab=99.59 E-value=4.6e-15 Score=99.98 Aligned_cols=63 Identities=35% Similarity=0.499 Sum_probs=57.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
|.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++++++++.+.+.+++.+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~ 63 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN 63 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC
Confidence 5799999999999987 78999999999999999999999999999999999888888888753
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.59 E-value=5.9e-15 Score=99.67 Aligned_cols=65 Identities=34% Similarity=0.443 Sum_probs=58.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++++.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~ 67 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAA 67 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhh
Confidence 4568999999999999975 6799999999999999999999999999999999988888887764
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.59 E-value=6.6e-15 Score=99.65 Aligned_cols=64 Identities=33% Similarity=0.534 Sum_probs=58.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|++.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++++++++.+.+.+++.
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~ 64 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG 64 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc
Confidence 357899999999999975 7899999999999999999999999999999999988888888775
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.57 E-value=1e-14 Score=98.00 Aligned_cols=64 Identities=27% Similarity=0.454 Sum_probs=57.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
|++.+||||||.|+||++ ..||+|+|++|+|+|+|+++.+.++ +++++|+++++.+.+.+++.+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~ 64 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLE 64 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh
Confidence 357899999999999987 7899999999999999999999987 788999999988988888753
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.57 E-value=1e-14 Score=99.00 Aligned_cols=65 Identities=34% Similarity=0.488 Sum_probs=58.9
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++++.+||||||.|+||++ ..||+|++++|+|+|+|+++.+.+++++++++++++..+.+.+++.
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~ 67 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLA 67 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhc
Confidence 3458999999999999985 7899999999999999999999999999999999988788888774
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.56 E-value=1.3e-14 Score=97.88 Aligned_cols=64 Identities=38% Similarity=0.560 Sum_probs=60.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
.+.+||||||.|+||+. ..||.|++++|+||++|+++.....+++++++|.++..+.+++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcc
Confidence 46899999999999998 89999999999999999999999999999999999999999988763
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.56 E-value=1.6e-14 Score=98.18 Aligned_cols=65 Identities=31% Similarity=0.511 Sum_probs=59.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
.++.+||||||.|+||++ ..||+|++++|+|+|+|+++++.+++++++++++++..+.+.+++.+
T Consensus 2 ~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~ 66 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAG 66 (459)
T ss_pred CcceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhcc
Confidence 358999999999999975 78999999999999999999999999999999999888888888753
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.56 E-value=1.6e-14 Score=98.72 Aligned_cols=64 Identities=25% Similarity=0.414 Sum_probs=58.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..+.+||||||.|+||++ ..||+|++++|+|+|+|+++++.+++++++++++++..+.+.+++.
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~ 66 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVA 66 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhh
Confidence 457899999999999986 6899999999999999999999999999999999888788887764
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []
Back Show alignment and domain information
Probab=99.56 E-value=2e-14 Score=90.57 Aligned_cols=60 Identities=28% Similarity=0.548 Sum_probs=49.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH-HHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA-EQMEDE 73 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~-~~~~~~ 73 (77)
+.+||+|||.|+||+. +.||+|++++|+|+|.|+++.+.+.. +++|+|+++++. +.+++.
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~ 62 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEEL 62 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHH
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHh
Confidence 4689999999999986 78999999999999999999999865 899999998764 444443
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.55 E-value=3.4e-14 Score=90.97 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRA 67 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~ 67 (77)
+.+.+||||||.|+||+. ..||+|++++|+|+|+|+++.+.+. ++++|+|+++++.
T Consensus 23 ~~i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~ 79 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSY 79 (252)
T ss_pred CceEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHH
Confidence 358899999999999964 5799999999999999999999985 6999999998763
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function
Back Show alignment and domain information
Probab=99.55 E-value=3.3e-14 Score=85.63 Aligned_cols=58 Identities=29% Similarity=0.532 Sum_probs=50.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
+.+||||||.|+||+ .||++++++|+|+++|+++.+.+.++++|+|+++++.+...+.
T Consensus 1 ~~~vIlAgG~s~R~g-----~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~ 58 (186)
T cd04182 1 IAAIILAAGRSSRMG-----GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAA 58 (186)
T ss_pred CeEEEECCCCCCCCC-----CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHH
Confidence 468999999999995 3899999999999999999999988899999998765554443
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.54 E-value=3e-14 Score=96.28 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~ 63 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLA 63 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc
Confidence 5789999999999986 7899999999999999999999999999999999888788888764
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Back Show alignment and domain information
Probab=99.52 E-value=3.6e-14 Score=97.17 Aligned_cols=56 Identities=27% Similarity=0.446 Sum_probs=50.7
Q ss_pred cEEEEEeCCCCCCCCCCCCC-CCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 11 MKALILVGGYGTRLRPLTLS-RPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~-~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+.+||||||.|+||+|+|.. .||+|+++.| +|+|+++++++...++++++|+++..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~ 58 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEE 58 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHH
Confidence 46899999999999999965 8999999966 89999999999998899999988854
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Back Show alignment and domain information
Probab=99.52 E-value=8.4e-14 Score=87.05 Aligned_cols=59 Identities=29% Similarity=0.506 Sum_probs=51.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH-HHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA-EQM 70 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~-~~~ 70 (77)
+++.+||||||.|+||+. +.||+|++++|+|+++|+++++.+++ +++|+|+++.+. +.+
T Consensus 2 ~~~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~ 62 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDF 62 (227)
T ss_pred CceEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHH
Confidence 457899999999999953 57899999999999999999999875 899999998765 444
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family
Back Show alignment and domain information
Probab=99.51 E-value=7.6e-14 Score=84.55 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=48.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~ 72 (77)
+||||||.|+|| +.||++++++|+|+++|+++.+.++++++++|+++++.+.+.+
T Consensus 2 ~iIla~G~s~R~-----g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~ 56 (188)
T TIGR03310 2 AIILAAGLSSRM-----GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVA 56 (188)
T ss_pred eEEECCCCcccC-----CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHH
Confidence 799999999999 4589999999999999999999988899999999877654443
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Back Show alignment and domain information
Probab=99.51 E-value=8.4e-14 Score=88.12 Aligned_cols=63 Identities=30% Similarity=0.556 Sum_probs=54.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCC-HHHHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYR-AEQMEDE 73 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~-~~~~~~~ 73 (77)
++++.+||+|||.|+||+. +.||++++++|+|+++|+++.+.... +++|+|+++++ .+.+.++
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~ 66 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKL 66 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHh
Confidence 3568999999999999987 88999999999999999999999976 89999999874 4444443
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Back Show alignment and domain information
Probab=99.51 E-value=1e-13 Score=84.87 Aligned_cols=56 Identities=29% Similarity=0.488 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~ 69 (77)
+++.+||||||.|+||+ +.||++++++|+|+++|+++.+. .++++|+|+++.+.+.
T Consensus 2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~ 57 (193)
T PRK00317 2 PPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLAR 57 (193)
T ss_pred CCceEEEEcCCCcccCC----CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHH
Confidence 46899999999999995 46899999999999999999998 5689999998765443
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=99.51 E-value=9.3e-15 Score=97.73 Aligned_cols=69 Identities=33% Similarity=0.587 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCee-HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKP-MLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~-li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++++-++|||+|+|+|+.|||+.++||-+||+|+. +|+++|+++.++|+.+|.|++.+....+.+||..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~ 72 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGR 72 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhC
Confidence 45688999999999999999999999999999976 5999999999999999999999998999999863
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.49 E-value=1.4e-13 Score=85.35 Aligned_cols=59 Identities=31% Similarity=0.538 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCH-HHHHHH
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRA-EQMEDE 73 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~-~~~~~~ 73 (77)
.+||||||.|+||+. ..||+|++++|+|+++|+++++.++ ++++++|+++++. +.+...
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~ 61 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKY 61 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHH
Confidence 379999999999964 4689999999999999999999998 6999999998653 444443
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.48 E-value=1.9e-13 Score=85.79 Aligned_cols=54 Identities=17% Similarity=0.469 Sum_probs=47.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYR 66 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~ 66 (77)
.+.+||||||.|+||+. +.||+|++++|+|+|+|+++++..++ +++++|+++.+
T Consensus 2 ~~~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~ 56 (230)
T PRK13385 2 NYELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQ 56 (230)
T ss_pred ceEEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChh
Confidence 36899999999999963 57999999999999999999998865 89999998764
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Back Show alignment and domain information
Probab=99.48 E-value=1.9e-13 Score=91.74 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=52.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQM 70 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~ 70 (77)
|+++.+||||||.|+||+. +.||++++++|+|+++|+++.+.+.+ +++|+|+++++....
T Consensus 3 mm~v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~ 63 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAY 63 (378)
T ss_pred CCcceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHH
Confidence 4568999999999999954 67999999999999999999999987 799999988754443
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production
Back Show alignment and domain information
Probab=99.47 E-value=2.5e-13 Score=84.04 Aligned_cols=57 Identities=30% Similarity=0.570 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHHH
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQME 71 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~~ 71 (77)
.+||||||.|+||+. ..||++++++|+|+++|+++++.+++ +++|+|+++++.....
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~ 59 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLA 59 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHH
Confidence 589999999999964 36899999999999999999999876 8999999987654433
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
>KOG1462|consensus
Back Show alignment and domain information
Probab=99.47 E-value=1.8e-14 Score=96.14 Aligned_cols=68 Identities=35% Similarity=0.581 Sum_probs=60.8
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC-CHHHHHHHH
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY-RAEQMEDEL 74 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~-~~~~~~~~~ 74 (77)
.+.++++||+|+|.|+||.-++...||+|+|++++|||+|.+++|.++|+++++|++.+ +.+.+...+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al 74 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESAL 74 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHH
Confidence 35679999999999999999889999999999999999999999999999999999987 455666555
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide
Back Show alignment and domain information
Probab=99.47 E-value=1.9e-13 Score=82.60 Aligned_cols=52 Identities=35% Similarity=0.577 Sum_probs=46.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+.+||||||.|+||+ .||++++++|+|+++|+++.+... +++|+|+++.+.+
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~ 52 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE 52 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH
Confidence 468999999999994 489999999999999999999988 8999999987644
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB
Back Show alignment and domain information
Probab=99.47 E-value=1.9e-13 Score=83.52 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=46.5
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~ 67 (77)
+.+||||||.|+|| +.+|.+++++|+|+++|+++.+.+.++++++|+++++.
T Consensus 1 ~~~vILAgG~s~Rm-----g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~ 52 (190)
T TIGR03202 1 IVAIYLAAGQSRRM-----GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKY 52 (190)
T ss_pred CeEEEEcCCccccC-----CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCcc
Confidence 35899999999999 55899999999999999999888888999999998654
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Back Show alignment and domain information
Probab=99.46 E-value=3.1e-13 Score=91.40 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||||||.|+||++ ..||+|++++|+|+|+|+++++.+. .++++|++++..+.+.+++.
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~-~~~i~vv~~~~~~~i~~~~~ 61 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKV-AQKVGVVLGHEAELVKKLLP 61 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHhcc
Confidence 4799999999999975 7899999999999999999999987 48899999988888887764
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.45 E-value=3e-13 Score=88.65 Aligned_cols=64 Identities=25% Similarity=0.489 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCCCCCCCC-CCCCcceeee-CCeeHHHHHHHHHHh-cCCCeEEEEccCC-HHHHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLT-LSRPKPLVEF-ANKPMLLHQIEALVE-AGVREVILAVSYR-AEQMEDEL 74 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t-~~~~K~ll~i-~g~~li~~~l~~l~~-~~~~~ivvv~~~~-~~~~~~~~ 74 (77)
+.+||||||.|+||+|++ +.+||||+++ ++++|++.+++++.. .+.++++|||+++ ...+.+.+
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql 69 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQL 69 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHH
Confidence 678999999999999998 8999999999 559999999999998 4588999999875 34444443
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Back Show alignment and domain information
Probab=99.45 E-value=4.4e-13 Score=82.93 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=47.8
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 5 GDNPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 5 ~~~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
|.+.+++.+||||||.|+|| +.+|++++++|+|+++|+++.+... +++++|++++
T Consensus 2 ~~~~~~~~~vILAgG~s~Rm-----g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~ 56 (200)
T PRK02726 2 KTVKNNLVALILAGGKSSRM-----GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPW 56 (200)
T ss_pred CCcCCCceEEEEcCCCcccC-----CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCC
Confidence 34456799999999999999 5589999999999999999999865 7889988864
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.44 E-value=6.2e-13 Score=83.72 Aligned_cols=57 Identities=30% Similarity=0.453 Sum_probs=49.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
++.++|+|+|.|+||+ +|+|++++|+|+|+|+++.+.++++++|+|++++ +.+.+++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~ 58 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAV 58 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHH
Confidence 5789999999999994 4999999999999999999999999999998864 4555554
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.42 E-value=5.6e-13 Score=81.03 Aligned_cols=61 Identities=38% Similarity=0.562 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+.+||+|||+|+||+ ..-|++++++|+|||+|+++.+.. .+++++++++++...++.++.+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~ 61 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLES 61 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHh
Confidence 358999999999996 245999999999999999999998 5899999999888888887754
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Back Show alignment and domain information
Probab=99.42 E-value=9.2e-13 Score=81.66 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
...+.+||||||+|+|| +.+|.|++++|+|++.++++...++++++++||++++
T Consensus 3 ~~~v~~VvLAAGrssRm-----G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~ 56 (199)
T COG2068 3 PSTVAAVVLAAGRSSRM-----GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHR 56 (199)
T ss_pred CcceEEEEEcccccccC-----CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 34689999999999999 5789999999999999999999999999999999986
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Back Show alignment and domain information
Probab=99.42 E-value=6.4e-13 Score=91.37 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=53.2
Q ss_pred CcEEEEEeCCCCCCCCCCCCC-CCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccCC-HHHHHHHH
Q psy9166 10 NMKALILVGGYGTRLRPLTLS-RPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSYR-AEQMEDEL 74 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~-~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~~-~~~~~~~~ 74 (77)
.+.+||||||.|+||+|+|.. .||+|+++.| +||++++++++...++.+.+|+++.. .+.+.+.+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql 72 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQL 72 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHH
Confidence 479999999999999999965 7999999954 79999999999988776666777753 44555444
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.42 E-value=1e-12 Score=82.47 Aligned_cols=58 Identities=33% Similarity=0.465 Sum_probs=50.2
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++.+||||+|.|+||+ +|+|++++|+|+|+|+++.+.++ ++++|+|+++. +.+.++++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~ 60 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE 60 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH
Confidence 4789999999999994 39999999999999999999998 79999999864 55666554
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide
Back Show alignment and domain information
Probab=99.41 E-value=1.1e-12 Score=82.37 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=49.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+.++|+|+|.|+||+ ||+|++++|+|+|+|+++.+.++ ++++|+|++++ +.+.+++.
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~ 59 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE 59 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH
Confidence 578999999999995 49999999999999999999998 89999998865 55555553
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Back Show alignment and domain information
Probab=99.41 E-value=7.4e-13 Score=81.75 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=47.6
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+.+++.+||||||.|+|| +.+|++++++| +|+++++++.+.+. +++|+|++++
T Consensus 5 ~~~~i~~vILAgG~s~Rm-----G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 5 MIDNIPCVILAGGKSSRM-----GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred cccCceEEEECCcccccC-----CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 345689999999999999 66899999999 99999999999877 8899988875
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial
Back Show alignment and domain information
Probab=99.40 E-value=1.5e-12 Score=79.00 Aligned_cols=53 Identities=30% Similarity=0.542 Sum_probs=45.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+.+||||||.|+||+ +.||++++++|+|+|+|+++.+.. .+++|+|++++..+
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~ 53 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPE 53 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHH
Confidence 468999999999995 358999999999999999999976 48999999876543
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
>KOG1461|consensus
Back Show alignment and domain information
Probab=99.38 E-value=2.2e-12 Score=90.12 Aligned_cols=69 Identities=36% Similarity=0.552 Sum_probs=65.3
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
...++||++|....+||.|+|...|+.|+|+.+.|||+|+++.|.++|+.+|+|+|+.+..++.+|+++
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~ 90 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEK 90 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhh
Confidence 356899999999999999999999999999999999999999999999999999999888999999875
>KOG1460|consensus
Back Show alignment and domain information
Probab=99.36 E-value=2e-12 Score=84.68 Aligned_cols=66 Identities=42% Similarity=0.710 Sum_probs=58.4
Q ss_pred CcEEEEEeCC--CCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGG--YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG--~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++.|||+-+| +|+||+|++-+.||+|+|++|+|||+|-++++.+. +..+|+++.=++++.+.+++.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis 70 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFIS 70 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHH
Confidence 5789999998 79999999999999999999999999999999985 589999987677777776664
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase
Back Show alignment and domain information
Probab=99.35 E-value=3.5e-12 Score=80.86 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+||+|+|.|+||. +|+|++++|+|||+|+++++.++++++|+|+++. +.+.+.+
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~ 55 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTC 55 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHH
Confidence 6999999999994 5999999999999999999998889999998864 3444444
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=8.4e-12 Score=83.39 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
+++.+||||||.|+||+ +.||+|++++|+|+|+|+++.+... +++|+|+++.+.+.+.++
T Consensus 4 ~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~ 63 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDL 63 (366)
T ss_pred CCceEEEEcCCcccCCC----CCCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhh
Confidence 36889999999999995 4689999999999999999999865 889988776555555443
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety
Back Show alignment and domain information
Probab=99.31 E-value=1.1e-11 Score=76.85 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=44.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
++.+||+|+|.|+||+ +|++++++|+|+|+|+++.+.+++ +++|+|+++.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~ 51 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDD 51 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCc
Confidence 3679999999999994 399999999999999999999987 7888887743
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Back Show alignment and domain information
Probab=99.30 E-value=1.1e-11 Score=82.82 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=46.5
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+..+.+||||||+|+|| +.+|++++++|+|+|+|+++.+... +++++|+++..
T Consensus 172 ~~~i~~iILAGG~SsRm-----G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~ 224 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRM-----GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAE 224 (369)
T ss_pred cCCceEEEEcCCccccC-----CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCc
Confidence 45678999999999999 5689999999999999999999875 78888887754
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat
Back Show alignment and domain information
Probab=99.30 E-value=1.3e-11 Score=77.48 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=47.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH--HHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA--EQMEDEL 74 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~--~~~~~~~ 74 (77)
+||+|+|.|+||+ +|++++++|+|+++|+++.+.+++ +++++|+++.+. +.+.+++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~ 60 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALA 60 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHH
Confidence 7999999999993 399999999999999999999987 899999998653 4554443
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
>PLN02917 CMP-KDO synthetase
Back Show alignment and domain information
Probab=99.27 E-value=2.7e-11 Score=78.99 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~~~~~~ 75 (77)
..+++.+||+|+|.|+||+ +|+|++++|+|||+|+++.+..++ .+.|+|. .+.+.+.+++.
T Consensus 44 ~~~~i~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~--~~~e~I~~~~~ 105 (293)
T PLN02917 44 FRSRVVGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA--TDDERIAECCR 105 (293)
T ss_pred cCCcEEEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE--CChHHHHHHHH
Confidence 3457889999999999994 399999999999999999999876 4554444 34456665543
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Back Show alignment and domain information
Probab=99.19 E-value=5.4e-11 Score=79.24 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=45.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
..+.+||||||+|+|| +.+|.|++++|+|+++|+++.+... +++|+|++++.
T Consensus 159 ~~i~~IILAGGkSsRM-----G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~ 210 (346)
T PRK14500 159 TPLYGLVLTGGKSRRM-----GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS 210 (346)
T ss_pred CCceEEEEeccccccC-----CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch
Confidence 3678999999999999 5689999999999999999998766 78898888654
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.19 E-value=6.4e-11 Score=73.35 Aligned_cols=54 Identities=26% Similarity=0.462 Sum_probs=44.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+..+.+||||+|+|+|| . +|.+++++|+|+++|+++.+... .+.++|+.+.+.+
T Consensus 2 ~~~~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~-~~~vvi~~~~~~~ 55 (192)
T COG0746 2 MTPMTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQ-VDVVVISANRNQG 55 (192)
T ss_pred CCCceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhccc-CCEEEEeCCCchh
Confidence 35689999999999999 3 69999999999999999999987 4556666655543
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes
Back Show alignment and domain information
Probab=99.16 E-value=2e-10 Score=74.11 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=51.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeC---CeeHHHHHHHHHHhc--------CCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFA---NKPMLLHQIEALVEA--------GVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~---g~~li~~~l~~l~~~--------~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+.+|+||||.|+||+. ..||++++++ |+|++++.++.+... ++..+++.+.+..+.+.+++++
T Consensus 1 va~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~ 74 (266)
T cd04180 1 VAVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK 74 (266)
T ss_pred CEEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHH
Confidence 3689999999999964 7899999998 999999999999763 2555555555667888888875
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
>TIGR03584 PseF pseudaminic acid CMP-transferase
Back Show alignment and domain information
Probab=99.08 E-value=5.5e-10 Score=70.29 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=41.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
+||+|+|.|+||+ +|.+.+++|+|++.|+++.+.+++ +++|+|++..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~ 49 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD 49 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 7999999999994 399999999999999999999987 7888777654
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2
Back Show alignment and domain information
Probab=99.03 E-value=2.2e-09 Score=66.46 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=42.8
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
.+||+|-|.|+|+.. |.+.+++|+|||+|+++++.+++ +++|+|.|..
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~ 49 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD 49 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS
T ss_pred CEEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 379999999999964 99999999999999999999987 8999998865
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Back Show alignment and domain information
Probab=98.99 E-value=2.6e-09 Score=73.82 Aligned_cols=65 Identities=28% Similarity=0.431 Sum_probs=51.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc------------C-CCeEEEEcc-CCHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA------------G-VREVILAVS-YRAEQME 71 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~------------~-~~~ivvv~~-~~~~~~~ 71 (77)
.++.+||||||.|+||+. ..||+++++ .|+|++++.++++... + .-+++|+++ +..+.+.
T Consensus 105 gkvavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~ 181 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTR 181 (482)
T ss_pred CCeEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHH
Confidence 458999999999999975 889999999 5899999999999875 1 124555554 6678888
Q ss_pred HHHhc
Q psy9166 72 DELLL 76 (77)
Q Consensus 72 ~~~~~ 76 (77)
+++++
T Consensus 182 ~~f~~ 186 (482)
T PTZ00339 182 QFLEE 186 (482)
T ss_pred HHHHh
Confidence 88864
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
Back Show alignment and domain information
Probab=98.92 E-value=6.1e-09 Score=68.91 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeC---CeeHHHHHHHHHHhcC-----------CCeEEEEcc-CCHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFA---NKPMLLHQIEALVEAG-----------VREVILAVS-YRAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~---g~~li~~~l~~l~~~~-----------~~~ivvv~~-~~~~~~~~~ 73 (77)
.++.+|+||||+|+|++. ..||+++|++ |+|++++.++.+...+ .-++++.++ +..+.+.++
T Consensus 14 ~~va~viLaGG~GTRLg~---~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRLGF---DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCcccccCC---CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 468899999999999953 7799999997 7999999999998742 124567777 567888888
Q ss_pred Hhc
Q psy9166 74 LLL 76 (77)
Q Consensus 74 ~~~ 76 (77)
+++
T Consensus 91 ~~~ 93 (323)
T cd04193 91 FKE 93 (323)
T ss_pred HHh
Confidence 864
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=98.87 E-value=9.7e-09 Score=65.04 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++.+||+|.=.||||.. |+|..++|+|||.|+.++..+++.++++|.+.+ +.+.+.+.
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~ 60 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQ 60 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH
Confidence 457899999999999964 999999999999999999999999999999865 56666554
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=98.56 E-value=2.6e-07 Score=58.19 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=45.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
++..|+|+|.|.|+|... |-+.+++|+||+.|++.+..+++ +++|+|.+..
T Consensus 2 ~~~iAiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs 53 (228)
T COG1083 2 MKNIAIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS 53 (228)
T ss_pred cceEEEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc
Confidence 467899999999999964 99999999999999999999998 7888887643
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=98.49 E-value=5.7e-07 Score=56.97 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC--CHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY--RAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~--~~~~~~~~~~ 75 (77)
++.+||=|.=.|+|+.. |.|+|++++|||+++++++..+. +++++|.++. ..+.+.++..
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~ 65 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR 65 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHH
Confidence 45566666667888854 99999999999999999999986 7899999874 3556665554
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose
Back Show alignment and domain information
Probab=98.36 E-value=2.2e-06 Score=56.44 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhc----CC-CeEEEEccC-CHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEA----GV-REVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~----~~-~~ivvv~~~-~~~~~~~~~~~ 76 (77)
.++.+|++|||.|+||+- ..||.++++ .|+++++..++.+... +. -..+|.++. ..+...+++++
T Consensus 2 ~kvavl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~ 73 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK 73 (300)
T ss_pred CcEEEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH
Confidence 367899999999999976 789999999 6789999988888653 32 245666664 46778888765
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose
Back Show alignment and domain information
Probab=98.31 E-value=2.5e-06 Score=56.47 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=48.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhcC---------CCeEEEEccC-CHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEAG---------VREVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~~---------~~~ivvv~~~-~~~~~~~~~~~ 76 (77)
.+|++|||+|+||+- ..||.++++ .|+++++..++++.+.+ .-.++|.++. ..++..+++++
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 579999999999987 889999998 58999999888876532 1255777774 46778888764
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2
Back Show alignment and domain information
Probab=98.16 E-value=8.9e-06 Score=55.73 Aligned_cols=65 Identities=31% Similarity=0.388 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHh----cCC-CeEEEEccC-CHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVE----AGV-REVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~----~~~-~~ivvv~~~-~~~~~~~~~~~ 76 (77)
.++.+|+||||.|+||+- ..||.++++ .|.++++..++.+.+ .+. -.++|.++. ..++..+++++
T Consensus 55 ~kvavl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k 126 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK 126 (420)
T ss_dssp TCEEEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH
T ss_pred CCEEEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH
Confidence 568899999999999976 789999999 678888888877765 232 345666664 57888888764
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Back Show alignment and domain information
Probab=98.06 E-value=1.6e-05 Score=55.17 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=50.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhc----CCC-eEEEEccC-CHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEA----GVR-EVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~----~~~-~ivvv~~~-~~~~~~~~~~~ 76 (77)
.++.+|.||||.|+||+- ..||.++++ .|+++++..++.+... |.. ..++.++. ..++..++|++
T Consensus 78 ~k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k 149 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK 149 (469)
T ss_pred hcEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH
Confidence 467899999999999987 789999999 6799998888877553 432 44666664 46778888765
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Back Show alignment and domain information
Probab=97.98 E-value=3e-05 Score=54.10 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc--------------CC-CeEEEEccC-CHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA--------------GV-REVILAVSY-RAEQ 69 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~--------------~~-~~ivvv~~~-~~~~ 69 (77)
.++.+|+||||+|+||+- ..||.++++ .++++++..++++... ++ -.++|.++. ..+.
T Consensus 115 gkvavvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 567899999999999976 789999877 5799999888876432 11 144677764 5677
Q ss_pred HHHHHhc
Q psy9166 70 MEDELLL 76 (77)
Q Consensus 70 ~~~~~~~ 76 (77)
..++|++
T Consensus 192 T~~ff~~ 198 (493)
T PLN02435 192 TRKFFES 198 (493)
T ss_pred HHHHHHh
Confidence 8888864
>PLN02830 UDP-sugar pyrophosphorylase
Back Show alignment and domain information
Probab=97.94 E-value=5.7e-05 Score=53.98 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc-----------C-CCeEEEEccC-CHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA-----------G-VREVILAVSY-RAEQMED 72 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~-----------~-~~~ivvv~~~-~~~~~~~ 72 (77)
.++.+|++|||.|+||+- ..||.++++ .|+++++..++.+... + .-.++|.++. ..+...+
T Consensus 127 ~kvavllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred CcEEEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 468899999999999976 788999987 5899999988887554 1 1246777775 4677888
Q ss_pred HHhc
Q psy9166 73 ELLL 76 (77)
Q Consensus 73 ~~~~ 76 (77)
+|++
T Consensus 204 ~~~~ 207 (615)
T PLN02830 204 LLER 207 (615)
T ss_pred HHHH
Confidence 8765
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=97.81 E-value=0.00012 Score=50.68 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=47.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeC-CeeHHHHHHHHHHhc----CC-CeEEEEccCCHHHHHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFA-NKPMLLHQIEALVEA----GV-REVILAVSYRAEQMEDEL 74 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~-g~~li~~~l~~l~~~----~~-~~ivvv~~~~~~~~~~~~ 74 (77)
..++.+|++|||+|+||+- ..||.++++. |+++++..++.+..+ ++ -+.++.++.+.++...++
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f 172 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYF 172 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHH
Confidence 3568999999999999987 7899999996 899999888776553 32 245666665554544444
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Back Show alignment and domain information
Probab=97.53 E-value=0.00021 Score=43.26 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCcceeeeCC--eeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 30 SRPKPLVEFAN--KPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 30 ~~~K~ll~i~g--~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+.+|.+++++| +|+++++++.+.. .+++++|++++.
T Consensus 2 G~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~ 39 (178)
T PRK00576 2 GRDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPG 39 (178)
T ss_pred CCCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCC
Confidence 45899999999 9999999998764 489999998754
>KOG2388|consensus
Back Show alignment and domain information
Probab=96.14 E-value=0.018 Score=40.23 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=43.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeC---CeeHHHHHHHHHHhc----------CC-CeEEEEccC-CHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFA---NKPMLLHQIEALVEA----------GV-REVILAVSY-RAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~---g~~li~~~l~~l~~~----------~~-~~ivvv~~~-~~~~~~~~ 73 (77)
.+..++++|+|+|+|++- ..||.+.+++ |+.++++..+.+... +. -..+|.+.. -.+...++
T Consensus 96 ~~~a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 467899999999999977 7899999986 455777665554332 21 134555554 35666666
Q ss_pred Hh
Q psy9166 74 LL 75 (77)
Q Consensus 74 ~~ 75 (77)
++
T Consensus 173 f~ 174 (477)
T KOG2388|consen 173 FE 174 (477)
T ss_pred Hh
Confidence 54
>KOG2638|consensus
Back Show alignment and domain information
Probab=89.40 E-value=2.2 Score=30.08 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhc----CCCeE-EEEccCC-HHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEA----GVREV-ILAVSYR-AEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~----~~~~i-vvv~~~~-~~~~~~~~~~ 76 (77)
.++.++=|.||.|+-|+- ..||.++++ +|.+.++-++..+... +++-- ++..+.+ .++....+++
T Consensus 102 ~KLavlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~k 173 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKK 173 (498)
T ss_pred hheEEEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHH
Confidence 456788899999999987 789999999 6788877666555443 34433 4444433 4666665554
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC
Back Show alignment and domain information
Probab=86.49 E-value=1.7 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.5
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+|+++++++.+..+++++++|+++.
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~ 54 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD 54 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7899999999999877788888764
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2
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Probab=80.19 E-value=7.1 Score=26.80 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCcceeeeCCeeH-HHHHHHHHHhc-CCCeEEEEccCC--HHHHHHHHh
Q psy9166 21 GTRLRPLTLSRPKPLVEFANKPM-LLHQIEALVEA-GVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 21 ~~R~~~~t~~~~K~ll~i~g~~l-i~~~l~~l~~~-~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
...|+++......-++.+.++|- +.+.+++|.++ |+++..++.+++ .+++.+.++
T Consensus 22 ~~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 22 EDKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 34566665555666778888875 88999999886 599888877765 466666554
4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 77
d1mc3a_ 291
c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
5e-26 d1tzfa_ 259
c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf
6e-26 d1fxoa_ 292
c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa
9e-26 d1lvwa_ 295
c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri
2e-24 d1yp2a2 307
c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr
3e-22 d1jyka_ 229
c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer
9e-21 d2oi6a2 248
c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
8e-17 d1g97a2 250
c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
6e-16 d2cu2a2 268
c.68.1.20 (A:1-268) Putative mannose-1-phosphate g
1e-11 d2dpwa1 231
c.68.1.19 (A:1-231) Uncharacterized protein TTHA01
2e-11 d1vpaa_ 221
c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt
3e-10 d1i52a_ 225
c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt
1e-09 d1vgwa_ 226
c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt
3e-09 d1w77a1 226
c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-
6e-09 d1w55a1 205
c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,
7e-08 d1vh1a_ 246
c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac
4e-06 d1vica_ 255
c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac
5e-06 d1e5ka_ 188
c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro
1e-05 d1qwja_ 228
c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou
3e-04 d1h7ea_ 245
c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac
0.002 d1eyra_ 225
c.68.1.13 (A:) CMP acylneuraminate synthetase {Nei
0.002
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]
Score = 94.4 bits (235), Expect = 5e-26
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK +IL GG GTRL P+T K L+ +KPM+ + + L+ AG+RE+++ + +
Sbjct: 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61
Query: 71 EDELL 75
LL
Sbjct: 62 FQRLL 66
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]
Score = 93.6 bits (231), Expect = 6e-26
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
KA+IL GG GTRL T+ +PKP+VE KP+L H ++ G+++ I+ Y+
Sbjct: 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYV 61
Query: 70 MEDEL 74
+++
Sbjct: 62 IKEYF 66
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]
Score = 93.7 bits (233), Expect = 9e-26
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
K +IL GG GTRL P TL+ K L+ +KPM+ + + L+ AG+RE+++ + +
Sbjct: 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61
Query: 71 EDELL 75
+LL
Sbjct: 62 FQQLL 66
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 90.4 bits (224), Expect = 2e-24
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
+MK ++L GG GTRL P+T + K L+ +KPM+ + + L+ AG+R++++ + R
Sbjct: 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLP 62
Query: 70 MEDELL 75
+ +LL
Sbjct: 63 LYRDLL 68
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 85.1 bits (209), Expect = 3e-22
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 2 CGSGDNPDNMKALILVGGYGTRLRPLTLSRPKPLVEFA-NKPMLLHQIEALVEAGVREVI 60
C D ++ +IL GG GTRL PLT R KP V N ++ + + + + ++
Sbjct: 3 CLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIY 62
Query: 61 LAVSYRAEQMEDEL 74
+ + + + L
Sbjct: 63 VLTQFNSASLNRHL 76
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]
Score = 79.7 bits (195), Expect = 9e-21
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
+KA+IL G GTRLRPLT + PK LV+ KP++ +QIE L E G+ ++I+ V Y EQ
Sbjct: 3 RVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQ 62
Query: 70 MED 72
+
Sbjct: 63 FDY 65
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]
Score = 69.7 bits (169), Expect = 8e-17
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
M +IL G GTR+ PK L A K M+ H I+A E G V L + +
Sbjct: 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDL 58
Query: 70 M 70
+
Sbjct: 59 L 59
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]
Score = 67.0 bits (162), Expect = 6e-16
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
A+IL G GTR++ PK L + A ML H ++ + + V ++AE +
Sbjct: 4 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV 58
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]
Score = 55.8 bits (133), Expect = 1e-11
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 11 MK--ALILVGGYGTRLRPL-TLSRPKPLVEFA-NKPMLLHQIEALVEAGVREVILAVSYR 66
MK AL++ GG G RL PL RPKP + K +L +E L E L R
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 67 AEQM 70
++
Sbjct: 61 DQEA 64
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]
Score = 54.9 bits (131), Expect = 2e-11
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
A++L GG + K LV + +PM+ +EAL AG+ V + +
Sbjct: 2 RPSAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP 60
Query: 70 ME 71
Sbjct: 61 AP 62
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]
Score = 51.6 bits (122), Expect = 3e-10
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 10 NMK-ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+M A++L G G R+ + PK +E + + + + +++ + ++ V+ R
Sbjct: 2 HMNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREW 58
Query: 69 QMEDE 73
E
Sbjct: 59 FEVVE 63
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]
Score = 49.7 bits (117), Expect = 1e-09
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 10 NMK--ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA 54
++ A++ G+G R++ PK + N+ +L H + AL+
Sbjct: 1 HLDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAH 44
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]
Score = 48.9 bits (115), Expect = 3e-09
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
ALI G G R +PK VE +K +L H + ++ + V +
Sbjct: 6 ALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF 60
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 48.1 bits (113), Expect = 6e-09
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEAL 51
++ ++L GG G R++ S PK + +P+ L+
Sbjct: 4 SVSVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTF 42
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]
Score = 44.9 bits (105), Expect = 7e-08
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEAL 51
M ++L G TR K + N P+ L+ + L
Sbjct: 1 EMSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNL 39
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]
Score = 40.4 bits (93), Expect = 4e-06
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KPLV+ KPM++H +E E+G +I+A +
Sbjct: 18 KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVAR 55
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]
Score = 40.1 bits (92), Expect = 5e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KPL + KPM+ H E +++G VI+A
Sbjct: 18 KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVAD 55
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 1e-05
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIE 49
+ ++L GG R+ K L+E KP+ H +
Sbjct: 3 TITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVAD 38
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 34.6 bits (78), Expect = 3e-04
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRP-KPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66
P ++ AL+L G + P K + A P++ + A ++AGV + + +
Sbjct: 1 PPHLAALVLARGGSKGI-------PLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH 53
Query: 67 AEQM 70
E
Sbjct: 54 DEIE 57
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]
Score = 32.7 bits (73), Expect = 0.002
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQM 70
KPL++ KPM+ H E ++ GV EV +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQ 57
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Length = 225
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]
Score = 32.4 bits (72), Expect = 0.002
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 11 MK----ALILVGGYGTRLRPLTLSRP-KPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65
M+ A+IL L P K L + +L H I A + + + I+ +
Sbjct: 1 MEKQNIAVILARQNSKGL-------PLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD 53
Query: 66 RAEQM 70
Sbjct: 54 GGLIA 58
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 77
d1tzfa_ 259
Glucose-1-phosphate cytidylyltransferase RfbF {Sal
99.88 d1jyka_ 229
CTP:phosphocholine cytidylytransferase LicC {Strep
99.85 d1yp2a2 307
Glucose-1-phosphate adenylyltransferase small subu
99.83 d1lvwa_ 295
RmlA (RfbA) {Archaeon Methanobacterium thermoautot
99.8 d1fxoa_ 292
RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}
99.78 d2oi6a2 248
N-acetylglucosamine 1-phosphate uridyltransferase
99.78 d1g97a2 250
N-acetylglucosamine 1-phosphate uridyltransferase
99.76 d1mc3a_ 291
RffH {Escherichia coli [TaxId: 562]}
99.76 d1i52a_ 225
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
99.7 d2cu2a2 268
Putative mannose-1-phosphate guanylyl transferase
99.69 d1w77a1 226
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
99.67 d1vpaa_ 221
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
99.66 d1vgwa_ 226
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
99.62 d1e5ka_ 188
Molybdenum cofactor biosynthesis protein MobA {Esc
99.6 d2dpwa1 231
Uncharacterized protein TTHA0179 {Thermus thermoph
99.59 d1w55a1 205
IspD/IspF bifunctional enzyme, CDP-me synthase dom
99.52 d1qwja_ 228
CMP acylneuraminate synthetase {Mouse (Mus musculu
99.28 d1eyra_ 225
CMP acylneuraminate synthetase {Neisseria meningit
99.26 d1vica_ 255
CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn
99.21 d1vh1a_ 246
CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn
99.19 d1h7ea_ 245
CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn
99.19 d2icya2 378
UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c
98.59 d1jv1a_ 501
UDP-N-acetylglucosamine pyrophosphorylase {Human (
98.14 d1t2da1 150
Lactate dehydrogenase {Malaria parasite (Plasmodiu
83.66 d1pzga1 154
Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5
82.15
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=1e-22 Score=124.55 Aligned_cols=66 Identities=35% Similarity=0.670 Sum_probs=55.2
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
...|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.
T Consensus 2 ~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~ 67 (259)
T d1tzfa_ 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFA 67 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHH
T ss_pred CceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHh
Confidence 467999999999999999999999999999999999999999999999999999999999999875
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.85 E-value=4.4e-22 Score=120.50 Aligned_cols=64 Identities=47% Similarity=0.731 Sum_probs=58.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~ 72 (77)
|+|.|||||||.|+||+|+|...||+|++++|+|||+|+++.+.+.|+++|+|++++..+.+..
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~ 65 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDY 65 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTH
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhh
Confidence 5688999999999999999999999999999999999999999999999999999987666643
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.83 E-value=2.1e-21 Score=122.03 Aligned_cols=69 Identities=23% Similarity=0.429 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+..++.|||||||.|+||+|+|...||+|+|++| .|||+|+++.+.++|+++|+|++++..+.+.+|+.
T Consensus 8 ~~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~ 77 (307)
T d1yp2a2 8 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLS 77 (307)
T ss_dssp HHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHH
T ss_pred cCCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhh
Confidence 3455899999999999999999999999999987 59999999999999999999999998888888874
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=1.1e-19 Score=115.09 Aligned_cols=66 Identities=35% Similarity=0.583 Sum_probs=59.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC-HHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR-AEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~-~~~~~~~~~ 75 (77)
.|.|||||||.||||+|+|...||+|+|++|+|+|+|+++++..+|+++++|++++. .+.+.+++.
T Consensus 3 ~MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~ 69 (295)
T d1lvwa_ 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLG 69 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT
T ss_pred CcEEEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhc
Confidence 577999999999999999999999999999999999999999999999999999865 455555553
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=1.3e-19 Score=115.29 Aligned_cols=65 Identities=35% Similarity=0.587 Sum_probs=59.1
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc-CCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS-YRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~-~~~~~~~~~~~ 75 (77)
..|||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|+++ +..+.+.+++.
T Consensus 2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~ 67 (292)
T d1fxoa_ 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLG 67 (292)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT
T ss_pred cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999999987776 55677777764
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.8e-19 Score=108.76 Aligned_cols=63 Identities=33% Similarity=0.452 Sum_probs=57.5
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.|.+||||||.|+||+| ..||+|++++|+|||+|+++.+.+.++++|+|++++..+.+..+..
T Consensus 2 ~MkvIILAAG~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~ 64 (248)
T d2oi6a2 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALK 64 (248)
T ss_dssp CEEEEEECCSCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCC
T ss_pred CceEEEECCCCCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeecc
Confidence 47899999999999988 6899999999999999999999999999999999998887776653
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.76 E-value=7.7e-19 Score=106.45 Aligned_cols=62 Identities=31% Similarity=0.392 Sum_probs=56.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..|||||||.|+||+| ..||+|++++|+|||+|+++.+.++|+++++|++++..+....+..
T Consensus 2 ~~AIIlAaG~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~ 63 (250)
T d1g97a2 2 NFAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA 63 (250)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTT
T ss_pred cEEEEECCCCCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhcc
Confidence 3689999999999998 6799999999999999999999999999999999998777766553
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.1e-19 Score=114.35 Aligned_cols=65 Identities=35% Similarity=0.580 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCH-HHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA-EQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~-~~~~~~~~ 75 (77)
|.|||||||.|+||+|+|...||+|+|++|+|+|+|+++.+..+|+++|+|+++++. +.+.++++
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~ 67 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLG 67 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhC
Confidence 579999999999999999999999999999999999999999999999999988754 44555553
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.9e-18 Score=103.80 Aligned_cols=57 Identities=26% Similarity=0.503 Sum_probs=50.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAE 68 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~ 68 (77)
|++.|||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++|+|+++++.+
T Consensus 2 M~i~AIILAaG~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~ 59 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDS 59 (225)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCC
T ss_pred CCEEEEEeCCCcceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhh
Confidence 679999999999999975 78999999999999999999998874 8899999876543
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=6.9e-18 Score=105.74 Aligned_cols=66 Identities=32% Similarity=0.498 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCCCCCCCCCC-CCCCcceeee-CCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLT-LSRPKPLVEF-ANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t-~~~~K~ll~i-~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~ 74 (77)
|++.+||||||.|+||+|+| ...||+|+++ +|+|||+++++++... +.++++|++++..+.+.++.
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~ 69 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPY 69 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh
Confidence 46789999999999999995 7789999997 6799999999999875 57889998888777776554
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.67 E-value=3.4e-17 Score=99.77 Aligned_cols=57 Identities=21% Similarity=0.423 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA 67 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~ 67 (77)
.+.+.+||||||.|+||+. ..||+|++++|+|||+|+++.+.++. ++.|+|++++..
T Consensus 2 ~k~i~~IIlAaG~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~ 59 (226)
T d1w77a1 2 EKSVSVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFF 59 (226)
T ss_dssp TTCEEEEEECCC----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGG
T ss_pred CCceEEEEeCCccCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhh
Confidence 4568999999999999986 78999999999999999999999886 788899887544
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.1e-16 Score=97.02 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=47.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQ 69 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~ 69 (77)
|||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++|+|+++.+...
T Consensus 6 AIILAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~ 60 (221)
T d1vpaa_ 6 AILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFE 60 (221)
T ss_dssp EEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHH
T ss_pred EEEccCcCcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhh
Confidence 89999999999975 68999999999999999999999875 89999998765433
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.62 E-value=4.1e-16 Score=94.80 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~ 66 (77)
++..|||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ ++.++|+++.+
T Consensus 2 ~K~iAIIlAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~ 57 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPE 57 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTT
T ss_pred CceEEEEeCCCCcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchh
Confidence 456799999999999974 68999999999999999999999987 68888887654
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.6e-15 Score=89.31 Aligned_cols=56 Identities=25% Similarity=0.465 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~ 69 (77)
..+.+||||||.|+||+ +.||+|++++|+|+|+|+++.+... ..+++|+++.+.+.
T Consensus 2 ~~i~~iILAgG~ssRmG----~~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~~~ 57 (188)
T d1e5ka_ 2 TTITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEI 57 (188)
T ss_dssp CSEEEEEECCCCCSSSC----SSCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSHHH
T ss_pred CceeEEEEcCCCCcCCC----CCCcccCEECCEehhHHHHhhhccc-ccccccccCccHHh
Confidence 45899999999999995 2479999999999999999999877 67788888766543
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=7.5e-16 Score=93.61 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
|+..+||||||+|+|+++++ ..||+|++++|+|||+|+++++.++++++++|+++++
T Consensus 1 M~~~avIlA~G~~~r~~r~g-~~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~ 57 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPG 57 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTT-CSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSS
T ss_pred CCceEEEECCCCCCCCCCCC-CCCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeecc
Confidence 46789999999999998776 3579999999999999999999999998888888764
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]
Probab=99.52 E-value=1.2e-14 Score=88.17 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
++.+||||||.|+||+. ..||+|++++|+|+|+|+++++.+.. ++.|+|+++.
T Consensus 1 ~is~IILAaG~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~ 54 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN 54 (205)
T ss_dssp CEEEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC
T ss_pred CeEEEEeCCccCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc
Confidence 36899999999999975 67999999999999999999999876 6777776543
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=1.1e-11 Score=74.27 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=45.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
+++.|||+|.|.|+|+. .|.+.+++|+|||+|+++++.+++ +++|+|++..
T Consensus 2 ~ki~aiIpaR~~S~Rlp------~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~ 53 (228)
T d1qwja_ 2 PHLAALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH 53 (228)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC
T ss_pred CCEEEEeccCCCCCCCC------CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecch
Confidence 57899999999999994 399999999999999999999987 7888888754
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]
Probab=99.26 E-value=1.6e-11 Score=73.19 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQMEDE 73 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~~~~ 73 (77)
.++..|||+|.|.|+|+.. |++++++|+|||+|+++.+.+++ +++|+|++.. +.+.+.
T Consensus 2 ~~~~iaiIpar~~S~R~p~------K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~--~~i~~i 60 (225)
T d1eyra_ 2 EKQNIAVILARQNSKGLPL------KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEE 60 (225)
T ss_dssp CCEEEEEEECCSCCSSSTT------GGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHH
T ss_pred CCCEEEEEccCCCCcCCCC------ccccccCCeEHHHHHHHHHHHcCCCceEEEeecc--chhhhh
Confidence 3556789999999999943 99999999999999999999988 6888887754 444443
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]
Probab=99.21 E-value=4e-11 Score=72.71 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=44.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+.+||+|.|.|+|++. |.+++++|+|||+|+++.+.++++++|+|++..
T Consensus 2 ~~~iIpAR~gSkRlp~------Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~ 50 (255)
T d1vica_ 2 FTVIIPARFASSRLPG------KPLADIKGKPMIQHVFEKALQSGASRVIIATDN 50 (255)
T ss_dssp CEEEEECCCCCSSSTT------GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC
T ss_pred EEEEEecCCCCCCCCC------chhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCC
Confidence 5789999999999943 999999999999999999999999999998865
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.19 E-value=4.4e-11 Score=72.47 Aligned_cols=56 Identities=32% Similarity=0.505 Sum_probs=46.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.+||+|.|.|+|++. |.|.+++|+|||+|+++.+..+++++|+|++.. +.+.+..
T Consensus 2 ~i~iIpAR~gSkrip~------KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~--~~i~~~~ 57 (246)
T d1vh1a_ 2 FVVIIPARYASTRLPG------KPLVDINGKPMIVHVLERARESGAERIIVATDH--EDVARAV 57 (246)
T ss_dssp CEEEEECCCCCC--CC------TTTCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHH
T ss_pred EEEEEecCCCCcCCCC------chhhhcCCccHHHHHHHHHHHcCCCcEEEEecC--ccccchh
Confidence 5789999999999953 999999999999999999999999999999865 4444443
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.19 E-value=5.6e-11 Score=71.77 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=44.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
+..+||+|.|.|+|++. |.|++++|+|||+|+++++.+++ +++|+|++..
T Consensus 2 k~i~iIpAR~~SkRl~~------Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~ 52 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLPG------KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD 52 (245)
T ss_dssp CEEEEEECCSCCSSSTT------GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC
T ss_pred CEEEEEcCCCCCcCCCC------ccccccCCccHHHHHHHHHHhCCCCCeEEEeccc
Confidence 56899999999999953 99999999999999999999886 8898888865
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.59 E-value=1e-07 Score=61.81 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeC-CeeHHHHHHHHHHh----cC-CCeEEEEcc-CCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFA-NKPMLLHQIEALVE----AG-VREVILAVS-YRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~-g~~li~~~l~~l~~----~~-~~~ivvv~~-~~~~~~~~~~~~ 76 (77)
.++.+|+||||.|+||+. ..||.+++++ |+++++..++.+.+ .| .-.++|.++ ...+.+.+++++
T Consensus 73 ~kvavv~LaGG~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~ 144 (378)
T d2icya2 73 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEK 144 (378)
T ss_dssp TTEEEEEEECCBSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGG
T ss_pred CCEEEEEecCCcccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHH
Confidence 568999999999999976 7899999994 89999999988865 23 234666666 457888888875
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.14 E-value=4.4e-06 Score=55.70 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=50.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc----------C-CCeEEEEcc-CCHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA----------G-VREVILAVS-YRAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~----------~-~~~ivvv~~-~~~~~~~~~ 73 (77)
.++.+|++|||.|+|++- ..||.++++ .|+++++..++.+... + .-.++|.++ ...+.+.++
T Consensus 101 gkvavvllaGG~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~ 177 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEF 177 (501)
T ss_dssp TCEEEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHH
T ss_pred CCEEEEEECCCccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHH
Confidence 468899999999999976 789999988 6799999887776552 2 134666666 457888888
Q ss_pred Hhc
Q psy9166 74 LLL 76 (77)
Q Consensus 74 ~~~ 76 (77)
|++
T Consensus 178 l~~ 180 (501)
T d1jv1a_ 178 FTK 180 (501)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
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class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.66 E-value=1.8 Score=23.45 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhcCCCeEEEEccCCHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~ 70 (77)
.+-..||.++|.....+..+.+ ...+-.+ .+.+++.-..+.+.+.+++-+++++...-+.+
T Consensus 70 ~~advvvitag~~~~~g~~~~~-~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~ 131 (150)
T d1t2da1 70 AGADVVIVTAGFTKAPGKSDKE-WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVM 131 (150)
T ss_dssp TTCSEEEECCSCSSCTTCCSTT-CCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHH
T ss_pred CCCcEEEEecccccCCCCCccc-cchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHH
Confidence 3456889999876665432211 1222212 35788999999999988887766554443433
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}
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class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]
Probab=82.15 E-value=1.7 Score=23.64 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=36.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCC-cceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHH
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRP-KPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~-K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~ 70 (77)
.-..||.++|.+...+..+.+.. -.++ -.+.+++...++.+.+.+++-+++++...-+.+
T Consensus 76 ~adiVvitag~~~~~g~~~~~~tR~~l~-~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~l 136 (154)
T d1pzga1 76 GADCVIVTAGLTKVPGKPDSEWSRNDLL-PFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCM 136 (154)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGH-HHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHH
T ss_pred CCCeEEEecccccCCCCCCcccchhhhh-hhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHH
Confidence 35678899988766643211111 1111 146778999999999988887776654443333
