Psyllid ID: psy91
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | 2.2.26 [Sep-21-2011] | |||||||
| P28661 | 478 | Septin-4 OS=Mus musculus | yes | N/A | 0.519 | 0.587 | 0.419 | 6e-61 | |
| Q4R4X5 | 478 | Septin-4 OS=Macaca fascic | N/A | N/A | 0.539 | 0.610 | 0.409 | 2e-60 | |
| Q5R6R7 | 478 | Septin-4 OS=Pongo abelii | yes | N/A | 0.539 | 0.610 | 0.406 | 4e-60 | |
| O43236 | 478 | Septin-4 OS=Homo sapiens | yes | N/A | 0.539 | 0.610 | 0.403 | 6e-60 | |
| P42209 | 366 | Septin-1 OS=Mus musculus | no | N/A | 0.517 | 0.765 | 0.382 | 6e-55 | |
| A5PJU9 | 367 | Septin-1 OS=Bos taurus GN | no | N/A | 0.545 | 0.803 | 0.367 | 8e-55 | |
| Q5EB96 | 366 | Septin-1 OS=Rattus norveg | no | N/A | 0.517 | 0.765 | 0.382 | 1e-54 | |
| Q5ZMH1 | 349 | Septin-2 OS=Gallus gallus | no | N/A | 0.517 | 0.802 | 0.382 | 6e-54 | |
| Q8WYJ6 | 367 | Septin-1 OS=Homo sapiens | no | N/A | 0.517 | 0.762 | 0.380 | 6e-54 | |
| Q91Y81 | 361 | Septin-2 OS=Rattus norveg | no | N/A | 0.512 | 0.767 | 0.397 | 1e-53 |
| >sp|P28661|SEPT4_MOUSE Septin-4 OS=Mus musculus GN=Sept4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 235 bits (600), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/336 (41%), Positives = 188/336 (55%), Gaps = 55/336 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 125 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 184
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 185 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLN 244
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ + + +D+E + + R+ +V D++ E R C
Sbjct: 245 RKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDRKKC 304
Query: 406 SYIDD---------QFRQYFNDE-----------------SGLNRKNIVDNRFATNRHRN 439
++ QF +DE + + +V+ R R R
Sbjct: 305 KIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRL 364
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS----QRGD 495
+VENP H DF KLR ML+ THMQDLKDVT + HYEN+RAQC+ ++ + +
Sbjct: 365 YPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERN 424
Query: 496 RGKLKKDSA--------PDGLITETDRLLLEKDEEL 523
R KL ++S P G ET++L+ EKDEEL
Sbjct: 425 RNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEEL 460
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis (Potential). May play a role in platelet secretion. Mus musculus (taxid: 10090) |
| >sp|Q4R4X5|SEPT4_MACFA Septin-4 OS=Macaca fascicularis GN=SEPT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 192/347 (55%), Gaps = 55/347 (15%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 125 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 184
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 185 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLN 244
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRA-- 403
+ + + +D+E + + R+ +V D++ E R
Sbjct: 245 RKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDRKKR 304
Query: 404 ------------------CCSYIDDQFR---QYFNDE---SGLNRKNIVDNRFATNRHRN 439
C S D+ F+ Q + + + +V+ R R R
Sbjct: 305 KIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRL 364
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS----QRGD 495
+VENP H DF KLR ML+ THMQDLKDVT + HYEN+RAQC+ ++ + +
Sbjct: 365 YPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERN 424
Query: 496 RGKLKKDSA--------PDGLITETDRLLLEKDEELVKSTIIISALN 534
R KL ++S P G ET++L+ EKDEEL + I+ +
Sbjct: 425 RNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEILHKIQ 471
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis (Potential). May play a role in platelet secretion. Macaca fascicularis (taxid: 9541) |
| >sp|Q5R6R7|SEPT4_PONAB Septin-4 OS=Pongo abelii GN=SEPT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 192/347 (55%), Gaps = 55/347 (15%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 125 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 184
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 185 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLN 244
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRA-- 403
+ + + +D+E + + R+ +V D++ E R
Sbjct: 245 RKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDRKKR 304
Query: 404 ------------------CCSYIDDQFR---QYFNDE---SGLNRKNIVDNRFATNRHRN 439
C S D+ F+ Q + + + +V+ R R R
Sbjct: 305 KIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRL 364
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS----QRGD 495
+VENP H DF KLR ML+ THMQDLKDVT + HYEN+RAQC+ ++ + +
Sbjct: 365 YPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERN 424
Query: 496 RGKLKKDSA--------PDGLITETDRLLLEKDEELVKSTIIISALN 534
R KL ++S P G ET++L+ EKDEEL + ++ +
Sbjct: 425 RNKLTRESGTDLPIPAVPPGTDPETEKLIREKDEELRRMQEMLHKIQ 471
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis (Potential). May play a role in platelet secretion. Pongo abelii (taxid: 9601) |
| >sp|O43236|SEPT4_HUMAN Septin-4 OS=Homo sapiens GN=SEPT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 192/347 (55%), Gaps = 55/347 (15%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 125 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 184
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 185 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLN 244
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + +D+E + + R+ +V D++ E
Sbjct: 245 RKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDHKKR 304
Query: 400 --------------SWRACCSYIDDQFR---QYFNDE---SGLNRKNIVDNRFATNRHRN 439
+ C S D+ F+ Q + + + +V+ R R R
Sbjct: 305 KIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRL 364
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS----QRGD 495
+VENP H DF KLR ML+ THMQDLKDVT + HYEN+RAQC+ ++ + +
Sbjct: 365 YPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERN 424
Query: 496 RGKLKKDSA--------PDGLITETDRLLLEKDEELVKSTIIISALN 534
R KL ++S P G ET++L+ EKDEEL + ++ +
Sbjct: 425 RNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEMLHKIQ 471
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis (Potential). May play a role in platelet secretion. Isoform ARTS, but not the other isoforms, is required for the induction of cell death mediated by TGF-beta and by other apoptotic stimuli. Homo sapiens (taxid: 9606) |
| >sp|P42209|SEPT1_MOUSE Septin-1 OS=Mus musculus GN=Sept1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 189/335 (56%), Gaps = 55/335 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP Q+HRKSVKKGFDFTLMV GESGLGKSTL+NSLFL++LY DR+VP+ + R +
Sbjct: 6 VGFAALPNQLHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTNLYEDRQVPDASARTAQ 65
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T TIE++ ++IEE G+K++LT+VDTPGFGDS++ + W +I++QF QY DE+
Sbjct: 66 TLTIERRGVEIEEGGIKVKLTLVDTPGFGDSVDCSDCWLPVVRFIEEQFEQYLRDESGLN 125
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEES----- 400
+ + + +D+ R V ++ ++ G D++ E+
Sbjct: 126 RKNIQDSRVHCCLYFISPFGRGLRPLDVAFLRAVHEKVNIIPVIGKADALMPRETQALKQ 185
Query: 401 ---------------WRACCSYIDDQFRQYFNDESGLN-------RKNIVDNRFATNRHR 438
+ C S D++F++ N+E N +V + R R
Sbjct: 186 KIRDQLKEEEINIYQFPECDSDEDEEFKKQ-NEEMKENIPFAVVGSCEVVRDGTRPVRGR 244
Query: 439 NNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ-----R 493
+ +VENP H DF LR ML+ TH+QDLK+VT D+ YE +RA+CL +++ R
Sbjct: 245 RYSWGTVEVENPHHCDFLNLRRMLVQTHLQDLKEVTHDLLYEGYRARCLQSLARPGARDR 304
Query: 494 GDRGKLKKDSA-----PDGLITETDRLLLEKDEEL 523
R KL + SA P + +T++L+ EKDEEL
Sbjct: 305 ASRSKLSRQSATEIPLPMLPLADTEKLIREKDEEL 339
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis. Mus musculus (taxid: 10090) |
| >sp|A5PJU9|SEPT1_BOVIN Septin-1 OS=Bos taurus GN=SEPT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 56/351 (15%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP Q+HRKSVKKGFDFTLMV GESGLGKSTL+NSLFL++LY DR++P + R +
Sbjct: 6 VGFAALPNQLHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTNLYEDRQIPEASARLTQ 65
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T TIE++ ++IEE G+K++LTVVDTPGFGDS++ + W +I++QF QY DE+
Sbjct: 66 TLTIERRGVEIEEGGIKVKLTVVDTPGFGDSVDCSDCWLPVVRFIEEQFEQYLRDESGLN 125
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ + + +D+ R V ++ ++ G D++ +E+ +A
Sbjct: 126 RKNIQDSRVHCCLYFISPFGRGLRPLDVAFLRAVHEKVNIIPVIGKADALMPKET-QALK 184
Query: 406 SYIDDQFRQ-----YFNDESGLNRKNIVDNRFATNRH-------------RNNAPTP--- 444
I +Q ++ Y E + + A + R+ P P
Sbjct: 185 QKIREQLKEEEINIYQFPECDSDEDEDFKRQDAEMKESIPFAVVGSCEVVRDGGPRPVRG 244
Query: 445 -------SQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ----- 492
+VENP H DF LR ML+ TH+QDLK+VT D+ YE +RA+CL +++
Sbjct: 245 RHYSWGTVEVENPHHCDFLNLRRMLVQTHLQDLKEVTHDLLYEGYRARCLQSLARPGARD 304
Query: 493 RGDRGKLKKDSA-----PDGLITETDRLLLEKDEELVKSTIIISALNAPKQ 538
R R KL + SA P + +T++L+ EKDEEL + ++ + A Q
Sbjct: 305 RASRSKLSRQSATEIPLPMLPLADTEKLIREKDEELRRMQEMLEKMQAQMQ 355
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis. Bos taurus (taxid: 9913) |
| >sp|Q5EB96|SEPT1_RAT Septin-1 OS=Rattus norvegicus GN=Sept1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 188/335 (56%), Gaps = 55/335 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP Q+HRKSVKKGFDFTLMV GESGLGKSTL+NSLFL++LY DR+VP+ + R +
Sbjct: 6 VGFAALPNQLHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTNLYEDRQVPDASARTTQ 65
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T TIE++ ++IEE G+K++LT+VDTPGFGDS++ + W +I++QF QY DE+
Sbjct: 66 TLTIERRGVEIEEGGIKVKLTLVDTPGFGDSVDCSDCWLPVVRFIEEQFEQYLRDESGLN 125
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEES----- 400
+ + + +D+ R V ++ ++ G D++ E+
Sbjct: 126 RKNIQDSRVHCCLYFISPFGRGLRPLDVAFLRAVHEKVNIIPVIGKADALLPRETQVLKQ 185
Query: 401 ---------------WRACCSYIDDQFRQYFNDESGLN-------RKNIVDNRFATNRHR 438
+ C S D++F++ N+E N +V R R
Sbjct: 186 KIRDQLKEEEINIYQFPECDSDEDEEFKKQ-NEEMKENIPFAVVGSSEVVREGTRPVRGR 244
Query: 439 NNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ-----R 493
+ +VENP H DF LR ML+ TH+QDLK+VT D+ YE +RA+CL +++ R
Sbjct: 245 RYSWGTVEVENPHHCDFLNLRRMLVQTHLQDLKEVTHDLLYEGYRARCLQSLARPGARDR 304
Query: 494 GDRGKLKKDSA-----PDGLITETDRLLLEKDEEL 523
R KL + SA P + +T++L+ EKDEEL
Sbjct: 305 ASRSKLSRQSATEIPLPMLPLADTEKLIREKDEEL 339
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q5ZMH1|SEPT2_CHICK Septin-2 OS=Gallus gallus GN=SEPT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 194/337 (57%), Gaps = 57/337 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P ++ +
Sbjct: 17 VGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERYIPGAAEKIER 76
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T IE +++IEERGVKLRLTVVDTPG+GD+INS++ ++ YID+QF +Y +DE+
Sbjct: 77 TVQIEASTVEIEERGVKLRLTVVDTPGYGDAINSQDCFKTIIQYIDNQFERYLHDESGLN 136
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ I+ K +D+E + + ++ +V D++ +E R
Sbjct: 137 RRHIIDNRVHCCFYFISPFGHGLKPLDVEFMKALHGKVNIVPVIAKADTLTLKERERLKR 196
Query: 406 SYIDD----QFRQY------------FNDESGLNRKNIVDNRFATN----------RHRN 439
+D+ R Y F +++ + + +I +N R R
Sbjct: 197 RVLDEISEHGIRIYQLPDADSDEDEEFKEQTRVLKASIPFAVIGSNQLIEVKGKKIRGRL 256
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKL 499
+VENP+H+DF KLR ML+ THMQDL++VT+D+HYENFR++ +L
Sbjct: 257 YPWGVVEVENPEHNDFLKLRTMLV-THMQDLQEVTQDLHYENFRSE------------RL 303
Query: 500 KKDSAP-DGLITETDRLLLEKDEELVKSTIIISALNA 535
K+ P + + + DR+L +K+ EL + +I+ + A
Sbjct: 304 KRTGKPVEEEVVDKDRILQQKEAELRRMQEMIAQMQA 340
|
Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Plays a role in the biogenesis of polarized columnar-shaped epithelium by maintaining polyglutamylated microtubules, thus facilitating efficient vesicle transport, and by impeding MAP4 binding to tubulin. Required for the progression through mitosis. Forms a scaffold at the midplane of the mitotic splindle required to maintain CENPE localization at kinetochores and consequently chromosome congression. During anaphase, may be required for chromosome segregation and spindle elongation. Plays a role in ciliogenesis and collective cell movements. In cilia, required for the integrity of the diffusion barrier at the base of the primary cilium that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Gallus gallus (taxid: 9031) |
| >sp|Q8WYJ6|SEPT1_HUMAN Septin-1 OS=Homo sapiens GN=SEPT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 186/336 (55%), Gaps = 56/336 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP Q+HRKSVKKGFDFTLMV GESGLGKSTL+NSLFL++LY DR+VP + R +
Sbjct: 6 VGFAALPNQLHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTNLYEDRQVPEASARLTQ 65
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T IE++ ++IEE GVK++LT+VDTPGFGDS++ + W +I++QF QY DE+
Sbjct: 66 TLAIERRGVEIEEGGVKVKLTLVDTPGFGDSVDCSDCWLPVVKFIEEQFEQYLRDESGLN 125
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ + + +D+ R V ++ ++ G D++ +E+ +A
Sbjct: 126 RKNIQDSRVHCCLYFISPFGRGLRPLDVAFLRAVHEKVNIIPVIGKADALMPQET-QALK 184
Query: 406 SYIDDQFRQY-----------------FNDESGLNRKNI---VDNRFATNRHRNNAPTPS 445
I DQ ++ F + +++I V R N P
Sbjct: 185 QKIRDQLKEEEIHIYQFPECDSDEDEDFKRQDAEMKESIPFAVVGSCEVVRDGGNRPVRG 244
Query: 446 --------QVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ----- 492
+VENP H DF LR ML+ TH+QDLK+VT D+ YE +RA+CL +++
Sbjct: 245 RRYSWGTVEVENPHHCDFLNLRRMLVQTHLQDLKEVTHDLLYEGYRARCLQSLARPGARD 304
Query: 493 RGDRGKLKKDSA-----PDGLITETDRLLLEKDEEL 523
R R KL + SA P + +T++L+ EKDEEL
Sbjct: 305 RASRSKLSRQSATEIPLPMLPLADTEKLIREKDEEL 340
|
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis. Homo sapiens (taxid: 9606) |
| >sp|Q91Y81|SEPT2_RAT Septin-2 OS=Rattus norvegicus GN=Sept2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 192/332 (57%), Gaps = 55/332 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P ++ +
Sbjct: 18 VGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIER 77
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T IE +++IEERGVKLRLTVVDTPG+GD+INS + ++ SYID+QF +Y +DE+
Sbjct: 78 TVQIEASTVEIEERGVKLRLTVVDTPGYGDAINSRDCFKTIISYIDEQFERYLHDESGLN 137
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ I+ K +D+ + + ++ +V D++ +E R
Sbjct: 138 RRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKK 197
Query: 406 SYIDD----QFRQY------------FNDESGLNRKNIVDNRFATN----------RHRN 439
+D+ + Y F +++ L + +I + +N R R
Sbjct: 198 RILDEIEEHSIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRL 257
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKL 499
+VENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L +RG R
Sbjct: 258 YPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERL----KRGGRKVE 312
Query: 500 KKDSAPDGLITETDRLLLEKDEELVKSTIIIS 531
+D D++LLEK+ EL + +I+
Sbjct: 313 NED-------MNKDQILLEKEAELRRMQEMIA 337
|
Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Plays a role in the biogenesis of polarized columnar-shaped epithelium by maintaining polyglutamylated microtubules, thus facilitating efficient vesicle transport, and by impeding MAP4 binding to tubulin. Required for the progression through mitosis. Forms a scaffold at the midplane of the mitotic splindle required to maintain CENPE localization at kinetochores and consequently chromosome congression. During anaphase, may be required for chromosome segregation and spindle elongation. Plays a role in ciliogenesis and collective cell movements. In cilia, required for the integrity of the diffusion barrier at the base of the primary cilium that prevents diffusion of transmembrane proteins between the cilia and plasma membranes: probably acts by regulating the assembly of the tectonic-like complex (also named B9 complex) by localizing TMEM231 protein. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | ||||||
| 189240392 | 948 | PREDICTED: similar to CG9699 CG9699-PA [ | 0.552 | 0.315 | 0.494 | 7e-80 | |
| 242018103 | 543 | Septin-4, putative [Pediculus humanus co | 0.530 | 0.528 | 0.513 | 8e-80 | |
| 270012472 | 353 | hypothetical protein TcasGA2_TC006627 [T | 0.539 | 0.827 | 0.501 | 8e-79 | |
| 307215196 | 717 | Septin-4 [Harpegnathos saltator] | 0.548 | 0.414 | 0.478 | 2e-78 | |
| 15292401 | 427 | LP06017p [Drosophila melanogaster] | 0.548 | 0.695 | 0.487 | 1e-77 | |
| 332029672 | 415 | Septin-4 [Acromyrmex echinatior] | 0.539 | 0.703 | 0.477 | 1e-77 | |
| 194891339 | 430 | GG18234 [Drosophila erecta] gi|190649124 | 0.548 | 0.690 | 0.487 | 4e-77 | |
| 195400687 | 440 | GJ15264 [Drosophila virilis] gi|19414159 | 0.548 | 0.675 | 0.494 | 5e-77 | |
| 198468337 | 432 | GA21972 [Drosophila pseudoobscura pseudo | 0.548 | 0.687 | 0.487 | 7e-77 | |
| 24642597 | 427 | septin 4, isoform A [Drosophila melanoga | 0.548 | 0.695 | 0.484 | 1e-76 |
| >gi|189240392|ref|XP_967604.2| PREDICTED: similar to CG9699 CG9699-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 170/344 (49%), Positives = 221/344 (64%), Gaps = 45/344 (13%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLP+QVHRKSVK+GFDFTLMVVGESGLGKSTL+NSLFL DLY +RK+P+V++R K
Sbjct: 10 IGFATLPDQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLDDLYKNRKIPDVSERIQK 69
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT+IEKK+M+IEERGVKLRLTV+DTPGFGD++N E+SW+ C +YIDDQFRQYF DE+
Sbjct: 70 TTSIEKKTMEIEERGVKLRLTVIDTPGFGDAVNCEDSWKVCTNYIDDQFRQYFTDESGLN 129
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + MD+E + + ++ +V D + S E
Sbjct: 130 RRNIQDNRVHCCLYFVPPWGHSLRQMDLELMKRLHQKVNIVVVIAKADCLTSSEIAKLKQ 189
Query: 400 --------------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
+ C S D++F+Q + + I++ R R
Sbjct: 190 NIINDIREHEIQMYEFPECDSDEDEEFKQQDRELKASVPFAVVGSNTILEVAGRKVRGRQ 249
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG-DRGK 498
VENPKHSDF KLR MLISTHMQDLKDVTEDVHYENFRAQC+SQISQ +RGK
Sbjct: 250 YPWGVVDVENPKHSDFIKLRTMLISTHMQDLKDVTEDVHYENFRAQCISQISQHARERGK 309
Query: 499 LKKDSAP-DGLITETDRLLLEKDEELVKSTIIISALNAPKQQML 541
LK+DSAP D +ETDRLLL+KD+E+ + +++ + ++M+
Sbjct: 310 LKRDSAPYDSDCSETDRLLLQKDQEIRRMQEMLNQMQEKLKEMV 353
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242018103|ref|XP_002429520.1| Septin-4, putative [Pediculus humanus corporis] gi|212514468|gb|EEB16782.1| Septin-4, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 172/335 (51%), Positives = 216/335 (64%), Gaps = 48/335 (14%)
Query: 236 GSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295
G + IGFATLPEQ+HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY DRK+P+
Sbjct: 183 GEVDRDYIGFATLPEQIHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYKDRKIPD 242
Query: 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 355
V+DR KTTTIEKKSMDIEERGVKLRLT+VDTPG+GD+IN EESWR+CC+YID+Q RQYF
Sbjct: 243 VSDRVEKTTTIEKKSMDIEERGVKLRLTIVDTPGYGDAINGEESWRSCCAYIDEQMRQYF 302
Query: 356 NDENRQGKTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSE 398
DE+ + + + +D+E R + ++ +V D++ +
Sbjct: 303 QDESGLNRKNIQDNRVHCCVYFVPPYGHGLRQLDLEFMRRLHRKVNIVPVIAKADTLTAS 362
Query: 399 ESWRA--------------------CCSYIDDQFRQYFNDESG------LNRKNIVDNRF 432
E R C S D++F++ + + +++
Sbjct: 363 EVKRLKERIMADIEENQIQIYQFPDCDSDEDEEFKEQDRELKASVPFAVIGSNVLLEING 422
Query: 433 ATNRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ 492
R R +VENPKHSDF KLRNMLI THM DLKD+T+DVHYENFRAQC+SQIS+
Sbjct: 423 KQVRGRQYPWGIVEVENPKHSDFIKLRNMLICTHMHDLKDITQDVHYENFRAQCISQISK 482
Query: 493 RG--DRGKLKKDSAP--DGLITETDRLLLEKDEEL 523
+R KLK+DS +GL ++TDRLLLEKDEE+
Sbjct: 483 EAIRERSKLKRDSIAQMEGL-SDTDRLLLEKDEEI 516
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270012472|gb|EFA08920.1| hypothetical protein TcasGA2_TC006627 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 169/337 (50%), Positives = 217/337 (64%), Gaps = 45/337 (13%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLP+QVHRKSVK+GFDFTLMVVGESGLGKSTL+NSLFL DLY +RK+P+V++R K
Sbjct: 10 IGFATLPDQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLDDLYKNRKIPDVSERIQK 69
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT+IEKK+M+IEERGVKLRLTV+DTPGFGD++N E+SW+ C +YIDDQFRQYF DE+
Sbjct: 70 TTSIEKKTMEIEERGVKLRLTVIDTPGFGDAVNCEDSWKVCTNYIDDQFRQYFTDESGLN 129
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + MD+E + + ++ +V D + S E
Sbjct: 130 RRNIQDNRVHCCLYFVPPWGHSLRQMDLELMKRLHQKVNIVVVIAKADCLTSSEIAKLKQ 189
Query: 400 --------------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
+ C S D++F+Q + + I++ R R
Sbjct: 190 NIINDIREHEIQMYEFPECDSDEDEEFKQQDRELKASVPFAVVGSNTILEVAGRKVRGRQ 249
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG-DRGK 498
VENPKHSDF KLR MLISTHMQDLKDVTEDVHYENFRAQC+SQISQ +RGK
Sbjct: 250 YPWGVVDVENPKHSDFIKLRTMLISTHMQDLKDVTEDVHYENFRAQCISQISQHARERGK 309
Query: 499 LKKDSAP-DGLITETDRLLLEKDEELVKSTIIISALN 534
LK+DSAP D +ETDRLLL+KD+E+ + +++ +
Sbjct: 310 LKRDSAPYDSDCSETDRLLLQKDQEIRRMQEMLNQMQ 346
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307215196|gb|EFN89968.1| Septin-4 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/345 (47%), Positives = 222/345 (64%), Gaps = 48/345 (13%)
Query: 238 IPYSD-IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296
+ Y D IGFATLPEQVHRKSVK+GF+FTLMV+GE+GLGKSTL+NSLFL DLY DR++P+V
Sbjct: 332 MAYRDYIGFATLPEQVHRKSVKRGFEFTLMVLGETGLGKSTLINSLFLGDLYKDRRIPDV 391
Query: 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356
+R KTT+IEKK+MDIEERGV+LRLT+VDTPGFGD++N E++W+AC +YID+QFRQYF
Sbjct: 392 AERVAKTTSIEKKTMDIEERGVRLRLTIVDTPGFGDAVNCEDTWKACSAYIDEQFRQYFT 451
Query: 357 DENRQGKTTTIEK----------------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEE 399
DE+ + + + +D+E R + ++ VV D++ + E
Sbjct: 452 DESGLNRKNIQDNRVHCCLYFIPPYGHGLRQIDLEVLRRLHRKVNVVPVIAKADTLTTHE 511
Query: 400 SWRA--------------------CCSYIDDQFRQYFNDESG------LNRKNIVDNRFA 433
+ C S D++F+Q + + +++
Sbjct: 512 VKKLKERILADIEEHEIQIYQFPDCDSDEDEEFKQQDKELKACIPFAVVGSSTVLEVAGR 571
Query: 434 TNRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQR 493
R R +VENPKHSDF KLR MLISTHMQDLKDVT+DVHYENFRAQC+SQISQ+
Sbjct: 572 KVRGRQYPWGVVEVENPKHSDFVKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQQ 631
Query: 494 G--DRGKLKKDSAP--DGLITETDRLLLEKDEELVKSTIIISALN 534
+R KLK+DS P + I++TDRLLL+KDEE+ + I++ +
Sbjct: 632 AIRERSKLKRDSGPHFENSISDTDRLLLQKDEEIRRMQDILAQMQ 676
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|15292401|gb|AAK93469.1| LP06017p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 215/347 (61%), Gaps = 50/347 (14%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMVVGESGLGKSTL+NSLFL DLY +R++PNV +R K
Sbjct: 66 IGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLINSLFLGDLYKNRQMPNVEERIEK 125
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT +EKK+MDIEERGV+LRLTVVDTPGFGD+IN E+SWR C YID+QFRQYF DE+
Sbjct: 126 TTKVEKKTMDIEERGVRLRLTVVDTPGFGDAINCEDSWRVCTQYIDEQFRQYFTDESGLN 185
Query: 363 KTTTIEK----------------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + MD++ R + L++ +V G D +N +E
Sbjct: 186 RRNIQDNRVHCCLYFVPPWGHSLRQMDLDLIRRLHLKVNIVLVIGKADCLNKQEVRKLKE 245
Query: 400 --------------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
+ C S DD F+Q + + I++ R R
Sbjct: 246 RILQDLEDNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVRGRQ 305
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--DRG 497
VE+P+HSDF KLR LISTHMQDLKD T+DVHYENFRAQC+SQISQ +RG
Sbjct: 306 YPWGVVNVEDPQHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQCISQISQHALRERG 365
Query: 498 KLKKDSAP-----DGLITETDRLLLEKDEELVKSTIIISALNAPKQQ 539
KLK+DS D I+ETDRLLL+KDEE+ + +++ + +Q
Sbjct: 366 KLKRDSISSTNGFDAAISETDRLLLQKDEEIRRMQDMLTQMQEKLKQ 412
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332029672|gb|EGI69561.1| Septin-4 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/339 (47%), Positives = 218/339 (64%), Gaps = 47/339 (13%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMV+GE+GLGKSTL+NSLFL DLY DR++P+ +R K
Sbjct: 35 IGFATLPEQVHRKSVKRGFEFTLMVLGETGLGKSTLINSLFLGDLYKDRRIPDAAERVAK 94
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT+IEKK+MDIEERGV+LRLT+VDTPGFGD++N E++W+AC +YID+QFRQYF DE+
Sbjct: 95 TTSIEKKTMDIEERGVRLRLTIVDTPGFGDAVNCEDTWKACSAYIDEQFRQYFTDESGLN 154
Query: 363 KTTTIEK----------------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEESWRA-- 403
+ + + +D+E R + ++ VV D++ + E +
Sbjct: 155 RKNIQDNRVHCCLYFIPPYGHGLRQIDLEVLRRLHRKVNVVPVIAKADTLTTHEVKKLKE 214
Query: 404 ------------------CCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
C S D++F+Q + + +++ R R
Sbjct: 215 RILADIEEHEIQIYQFPDCDSDEDEEFKQQDKELKACIPFAVVGSSTVLEVAGKKVRGRQ 274
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--DRG 497
+VENPKHSDF KLR MLISTHMQDLKDVT+DVHYENFRAQC+SQISQ+ +R
Sbjct: 275 YPWGVVEVENPKHSDFVKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQQAIRERS 334
Query: 498 KLKKDSAP--DGLITETDRLLLEKDEELVKSTIIISALN 534
KLK+DS P + I++TDRLLL+KDEE+ + I++ +
Sbjct: 335 KLKRDSGPHFENSISDTDRLLLQKDEEIRRMQDILAQMQ 373
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194891339|ref|XP_001977475.1| GG18234 [Drosophila erecta] gi|190649124|gb|EDV46402.1| GG18234 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 214/347 (61%), Gaps = 50/347 (14%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMVVGESGLGKSTL+NSLFL DLY +R++PNV +R K
Sbjct: 69 IGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLINSLFLGDLYKNRQMPNVEERIEK 128
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT +EKK+MDIEERGV+LRLTVVDTPGFGD+IN E+SWR C YID+QFRQYF DE+
Sbjct: 129 TTKVEKKTMDIEERGVRLRLTVVDTPGFGDAINCEDSWRVCTQYIDEQFRQYFTDESGLN 188
Query: 363 KTTTIEK----------------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + MD++ R + ++ +V G D +N +E
Sbjct: 189 RRNIQDNRVHCCLYFVPPWGHSLRQMDLDLIRRLHRKVNIVLVIGKADCLNKQEVRKLKE 248
Query: 400 --------------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
+ C S DD F+Q + + I++ R R
Sbjct: 249 RILQDLEDNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVRGRQ 308
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--DRG 497
VE+P+HSDF KLR LISTHMQDLKD T+DVHYENFRAQC+SQISQ +RG
Sbjct: 309 YPWGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQCISQISQHALRERG 368
Query: 498 KLKKDSAP-----DGLITETDRLLLEKDEELVKSTIIISALNAPKQQ 539
KLK+DS D ITETDRLLL+KDEE+ + +++ + +Q
Sbjct: 369 KLKRDSISSTNGFDAAITETDRLLLQKDEEIRRMQDMLTQMQEKLKQ 415
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195400687|ref|XP_002058947.1| GJ15264 [Drosophila virilis] gi|194141599|gb|EDW58016.1| GJ15264 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 212/340 (62%), Gaps = 43/340 (12%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMVVGESGLGKSTL+NSLFL DLY +R++PNV DR K
Sbjct: 86 IGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLINSLFLGDLYKNRQMPNVEDRIEK 145
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT +EKK+MDIEERGV+LRLTVVDTPGFGD+IN E+SWR C YID+QFRQYF DE+
Sbjct: 146 TTRVEKKTMDIEERGVRLRLTVVDTPGFGDAINCEDSWRVCTQYIDEQFRQYFTDESGLN 205
Query: 363 KTTTIEK---------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEE------------- 399
+ + + MD++ R + ++ +V G D +N E
Sbjct: 206 RRNIQDNRVHCCLSFLRQMDLDLIRRLHRKVNIVLVIGKADCLNKTEVRKLKERILQDLE 265
Query: 400 -------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRNNAPTPSQ 446
+ C S DD F+Q + + I++ R R
Sbjct: 266 DNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVRGRQYPWGVVN 325
Query: 447 VENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--DRGKLKKDSA 504
VE+ +HSDF KLR LISTHMQDLKD T+DVHYENFRAQC+SQISQ +RGKLK+DS
Sbjct: 326 VEDAEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQCISQISQHALRERGKLKRDSI 385
Query: 505 P-----DGLITETDRLLLEKDEELVKSTIIISALNAPKQQ 539
D I+ETDRLLL+KDEE+ + +++ + +Q
Sbjct: 386 SSTNGFDAAISETDRLLLQKDEEIRRMQDMLTQMQEKLKQ 425
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198468337|ref|XP_001354667.2| GA21972 [Drosophila pseudoobscura pseudoobscura] gi|198146367|gb|EAL31722.2| GA21972 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 215/347 (61%), Gaps = 50/347 (14%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMVVGESGLGKSTL+NSLFL DLY +R++PNV +R K
Sbjct: 71 IGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLINSLFLGDLYKNRQMPNVEERIEK 130
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT +EKK+MDIEERGV+LRLTVVDTPGFGD+IN E+SWR C SYID+QFRQYF DE+
Sbjct: 131 TTRVEKKTMDIEERGVRLRLTVVDTPGFGDAINCEDSWRVCTSYIDEQFRQYFTDESGLN 190
Query: 363 KTTTIEK----------------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + MD++ R + ++ +V G D +N +E
Sbjct: 191 RRNIQDNRVHCCLYFVPPWGHSLRQMDLDLIRRLHRKVNIVLVIGKADCLNKQEVRKLKE 250
Query: 400 --------------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
+ C S DD F+Q + + I++ R R
Sbjct: 251 RILQDLEDNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVRGRQ 310
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--DRG 497
VE+P+HSDF KLR LISTHMQDLKD T+DVHYENFRAQC+SQISQ +RG
Sbjct: 311 YPWGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQCISQISQHALRERG 370
Query: 498 KLKKDSAP-----DGLITETDRLLLEKDEELVKSTIIISALNAPKQQ 539
KLK+DS D I+ETDRLLL+KDEE+ + +++ + +Q
Sbjct: 371 KLKRDSISSTNGFDAAISETDRLLLQKDEEIRRMQDMLTQMQEKLKQ 417
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24642597|ref|NP_728003.1| septin 4, isoform A [Drosophila melanogaster] gi|24642599|ref|NP_728004.1| septin 4, isoform B [Drosophila melanogaster] gi|24642601|ref|NP_573147.2| septin 4, isoform C [Drosophila melanogaster] gi|24642603|ref|NP_728005.1| septin 4, isoform D [Drosophila melanogaster] gi|24642605|ref|NP_728006.1| septin 4, isoform E [Drosophila melanogaster] gi|24642607|ref|NP_728007.1| septin 4, isoform F [Drosophila melanogaster] gi|7293264|gb|AAF48645.1| septin 4, isoform C [Drosophila melanogaster] gi|7293265|gb|AAF48646.1| septin 4, isoform B [Drosophila melanogaster] gi|22832394|gb|AAN09414.1| septin 4, isoform A [Drosophila melanogaster] gi|22832395|gb|AAN09415.1| septin 4, isoform D [Drosophila melanogaster] gi|22832396|gb|AAN09416.1| septin 4, isoform E [Drosophila melanogaster] gi|22832397|gb|AAN09417.1| septin 4, isoform F [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/347 (48%), Positives = 214/347 (61%), Gaps = 50/347 (14%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMVVGESGLGKSTL+NSLFL DLY +R++PNV +R K
Sbjct: 66 IGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLINSLFLGDLYKNRQMPNVEERIEK 125
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
TT +EKK+MDIEERGV+LRLTVVDTPGFGD+IN E+SWR C YID+QFRQYF DE+
Sbjct: 126 TTKVEKKTMDIEERGVRLRLTVVDTPGFGDAINCEDSWRVCTQYIDEQFRQYFTDESGLN 185
Query: 363 KTTTIEK----------------KSMDIEE-RGVKLRLTVVDTPGFGDSINSEE------ 399
+ + + MD++ R + ++ +V G D +N +E
Sbjct: 186 RRNIQDNRVHCCLYFVPPWGHSLRQMDLDLIRRLHRKVNIVLVIGKADCLNKQEVRKLKE 245
Query: 400 --------------SWRACCSYIDDQFRQYFNDESG------LNRKNIVDNRFATNRHRN 439
+ C S DD F+Q + + I++ R R
Sbjct: 246 RILQDLEDNHIQLYQFPECDSDEDDDFKQQDRELKASIPFAVVGSNTILEVAGKKVRGRQ 305
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--DRG 497
VE+P+HSDF KLR LISTHMQDLKD T+DVHYENFRAQC+SQISQ +RG
Sbjct: 306 YPWGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQCISQISQHALRERG 365
Query: 498 KLKKDSAP-----DGLITETDRLLLEKDEELVKSTIIISALNAPKQQ 539
KLK+DS D I+ETDRLLL+KDEE+ + +++ + +Q
Sbjct: 366 KLKRDSISSTNGFDAAISETDRLLLQKDEEIRRMQDMLTQMQEKLKQ 412
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | ||||||
| FB|FBgn0259923 | 427 | Sep4 "Septin 4" [Drosophila me | 0.216 | 0.274 | 0.786 | 2e-75 | |
| ZFIN|ZDB-GENE-051120-87 | 476 | sept4a "septin 4a" [Danio reri | 0.216 | 0.245 | 0.717 | 1.2e-66 | |
| UNIPROTKB|F1MEZ1 | 356 | SEPT5 "Septin-5" [Bos taurus ( | 0.216 | 0.328 | 0.658 | 1.8e-58 | |
| UNIPROTKB|F1RRN6 | 477 | LOC100515575 "Uncharacterized | 0.216 | 0.245 | 0.683 | 2e-61 | |
| UNIPROTKB|K7GM78 | 458 | LOC100515575 "Uncharacterized | 0.216 | 0.255 | 0.683 | 2e-61 | |
| UNIPROTKB|E2R9P3 | 360 | SEPT4 "Uncharacterized protein | 0.216 | 0.325 | 0.683 | 2.6e-61 | |
| UNIPROTKB|Q3T008 | 379 | SEPT4 "Septin 4" [Bos taurus ( | 0.216 | 0.308 | 0.692 | 4.2e-61 | |
| RGD|1308781 | 379 | Sept4 "septin 4" [Rattus norve | 0.216 | 0.308 | 0.692 | 4.2e-61 | |
| UNIPROTKB|E9PST0 | 379 | Sept4 "Protein Sept4" [Rattus | 0.216 | 0.308 | 0.692 | 4.2e-61 | |
| UNIPROTKB|E9PTD4 | 478 | Sept4 "Protein Sept4" [Rattus | 0.216 | 0.244 | 0.692 | 4.2e-61 |
| FB|FBgn0259923 Sep4 "Septin 4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 92/117 (78%), Positives = 106/117 (90%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
IGFATLPEQVHRKSVK+GF+FTLMVVGESGLGKSTL+NSLFL DLY +R++PNV +R K
Sbjct: 66 IGFATLPEQVHRKSVKRGFEFTLMVVGESGLGKSTLINSLFLGDLYKNRQMPNVEERIEK 125
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
TT +EKK+MDIEERGV+LRLTVVDTPGFGD+IN E+SWR C YID+QFRQYF DE+
Sbjct: 126 TTKVEKKTMDIEERGVRLRLTVVDTPGFGDAINCEDSWRVCTQYIDEQFRQYFTDES 182
|
|
| ZFIN|ZDB-GENE-051120-87 sept4a "septin 4a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 84/117 (71%), Positives = 97/117 (82%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGF FTLMV GESGLGKSTLVNSLFL+DLY DRK+PN +R +
Sbjct: 117 VGFATLPNQVHRKSVKKGFAFTLMVAGESGLGKSTLVNSLFLTDLYKDRKMPNAEERIAQ 176
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++ IEE+GVKLRLT+VDTPGFGD++N+ ESWRA YID QF QYF DE+
Sbjct: 177 TVEITKHTVAIEEKGVKLRLTIVDTPGFGDAVNNTESWRAIVDYIDQQFEQYFRDES 233
|
|
| UNIPROTKB|F1MEZ1 SEPT5 "Septin-5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 77/117 (65%), Positives = 96/117 (82%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLV+SLFL+DLY +RK+ + +R +
Sbjct: 12 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLYKERKLLSAEERISQ 71
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GVKL+LT+VDTPGFGD++N+ E W+ Y+D QF QYF DE+
Sbjct: 72 TVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNSECWKPITDYVDQQFEQYFRDES 128
|
|
| UNIPROTKB|F1RRN6 LOC100515575 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTL+NSLFL+DLY DRK+ + +R +
Sbjct: 124 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTDLYRDRKLLSAEERIMQ 183
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GVKLRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 184 TVEITKHAVDIEEKGVKLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDES 240
|
|
| UNIPROTKB|K7GM78 LOC100515575 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTL+NSLFL+DLY DRK+ + +R +
Sbjct: 105 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTDLYRDRKLLSAEERIMQ 164
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GVKLRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 165 TVEITKHAVDIEEKGVKLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDES 221
|
|
| UNIPROTKB|E2R9P3 SEPT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ + +R +
Sbjct: 7 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLSAEERIMQ 66
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 67 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDES 123
|
|
| UNIPROTKB|Q3T008 SEPT4 "Septin 4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ + +R +
Sbjct: 26 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLSAEERIMQ 85
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GVKLRLT+VDTPGFGD++N+ E W+ YID QF QYF DE+
Sbjct: 86 TVEITKHAVDIEEKGVKLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDES 142
|
|
| RGD|1308781 Sept4 "septin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 81/117 (69%), Positives = 95/117 (81%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 26 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 85
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E WR YID QF QYF DE+
Sbjct: 86 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDES 142
|
|
| UNIPROTKB|E9PST0 Sept4 "Protein Sept4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 81/117 (69%), Positives = 95/117 (81%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 26 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 85
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E WR YID QF QYF DE+
Sbjct: 86 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDES 142
|
|
| UNIPROTKB|E9PTD4 Sept4 "Protein Sept4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 81/117 (69%), Positives = 95/117 (81%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFATLP QVHRKSVKKGFDFTLMV GESGLGKSTLVNSLFL+DLY DRK+ +R +
Sbjct: 125 VGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQ 184
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I K ++DIEE+GV+LRLT+VDTPGFGD++N+ E WR YID QF QYF DE+
Sbjct: 185 TVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDES 241
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 541 | |||
| pfam00735 | 280 | pfam00735, Septin, Septin | 2e-65 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 5e-43 | |
| COG5019 | 373 | COG5019, CDC3, Septin family protein [Cell divisio | 3e-36 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 1e-19 | |
| COG5019 | 373 | COG5019, CDC3, Septin family protein [Cell divisio | 1e-14 | |
| COG5019 | 373 | COG5019, CDC3, Septin family protein [Cell divisio | 3e-14 | |
| COG5019 | 373 | COG5019, CDC3, Septin family protein [Cell divisio | 4e-14 | |
| pfam00735 | 280 | pfam00735, Septin, Septin | 5e-14 | |
| pfam00735 | 280 | pfam00735, Septin, Septin | 1e-13 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 2e-12 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 2e-12 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-08 | |
| pfam00735 | 280 | pfam00735, Septin, Septin | 1e-06 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 3e-06 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 4e-06 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-05 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 6e-05 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 1e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 2e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 2e-04 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 3e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 3e-04 | |
| COG5019 | 373 | COG5019, CDC3, Septin family protein [Cell divisio | 4e-04 | |
| PRK00098 | 298 | PRK00098, PRK00098, GTPase RsgA; Reviewed | 5e-04 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 0.002 |
| >gnl|CDD|201420 pfam00735, Septin, Septin | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 2e-65
Identities = 101/272 (37%), Positives = 149/272 (54%), Gaps = 42/272 (15%)
Query: 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318
KGFDFTLMVVGESGLGK+TL+N+LFL+DL +R +P +++ KT I+ +++IEE GV
Sbjct: 1 KGFDFTLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGV 60
Query: 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK--------- 369
KL LTV+DTPGFGD+I++ W+ YID+QF QY DE+R +T+ ++
Sbjct: 61 KLNLTVIDTPGFGDAIDNSNCWKPIVEYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFI 120
Query: 370 -------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN---- 417
K +D+E + + ++ ++ D++ +E R + RQ
Sbjct: 121 SPTGHGLKPLDVEFMKKLHEKVNIIPVIAKADTLTPDELQRFKKRIRAEIERQNIKIYHF 180
Query: 418 --------DESGLNRK-------------NIVDNRFATNRHRNNAPTPSQVENPKHSDFN 456
+E + ++N R R +VENP H DF
Sbjct: 181 PDEESDEDEEKEQTEQLKSSIPFAIVGSNTEIENDGKKVRGRKYPWGVVEVENPSHCDFL 240
Query: 457 KLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 488
KLRNMLI TH+QDLK+VT ++HYEN+R++ LS
Sbjct: 241 KLRNMLIRTHLQDLKEVTHELHYENYRSEKLS 272
|
Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 5e-43
Identities = 53/110 (48%), Positives = 72/110 (65%)
Query: 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318
+GF F +MVVGESGLGKST +N+LF + LY + P + KT I+ ++EE GV
Sbjct: 1 RGFQFNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGV 60
Query: 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368
KL+LTV+DTPGFGD+IN+ + W+ YIDDQF Y +E+R + I
Sbjct: 61 KLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFESYLREESRINRNRRIP 110
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN-DR 299
+G + LP Q HRK KKG DFT+MVVGESGLGK+T +N+LF + L + ++ ++ +
Sbjct: 2 GYVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEG 61
Query: 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359
T I+ ++EE G L LTV+DTPGFGD I++ + W YIDDQF QY ++E
Sbjct: 62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQ 121
Query: 360 RQGKTTTIE 368
+ + +
Sbjct: 122 KIKRNPKFK 130
|
Length = 373 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 26/46 (56%), Positives = 36/46 (78%)
Query: 446 QVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS 491
+VEN +H DF KLRN+LI TH+QDLK+ T +VHYEN+R++ L +
Sbjct: 230 EVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRSEKLEALK 275
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 447 VENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPD 506
+++ +HSDF KLRN+LI TH+Q+LK+ TE++ YEN+R ++S + G+ +
Sbjct: 252 IDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRT---EKLSGLKNSGEPSLKEIHE 308
Query: 507 GLITETDRLLLEKDEELVKSTI 528
+ E +R L +K E ++
Sbjct: 309 ARLNEEERELKKKFTEKIREKE 330
|
Length = 373 |
| >gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS 237
Y+G + LP Q HRK KKG DFT+MVVGESGLGK+T +N+LF + L V+E
Sbjct: 3 YVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSL--------VDETEI 54
Query: 238 IPYSDIGFATLPEQVHRKSV--KKGFDFTLMVVGESGLG 274
G + E K+ + GF L V+ G G
Sbjct: 55 DDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFG 93
|
Length = 373 |
| >gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 28/42 (66%), Positives = 34/42 (80%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 120
Y+G + LP Q HRK KKG DFT+MVVGESGLGK+T +N+LF
Sbjct: 3 YVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLF 44
|
Length = 373 |
| >gnl|CDD|201420 pfam00735, Septin, Septin | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 195 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235
KGFDFTLMVVGESGLGK+TL+N+LFL+DL +R +P +EK
Sbjct: 1 KGFDFTLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEK 41
|
Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280 |
| >gnl|CDD|201420 pfam00735, Septin, Septin | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 27/36 (75%), Positives = 33/36 (91%)
Query: 96 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 131
KGFDFTLMVVGESGLGK+TL+N+LFL+DL +R +P
Sbjct: 1 KGFDFTLMVVGESGLGKTTLINTLFLTDLIPERGIP 36
|
Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 96 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 128
+GF F +MVVGESGLGKST +N+LF + LY +
Sbjct: 1 RGFQFNIMVVGESGLGKSTFINTLFGTKLYPSK 33
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 195 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227
+GF F +MVVGESGLGKST +N+LF + LY +
Sbjct: 1 RGFQFNIMVVGESGLGKSTFINTLFGTKLYPSK 33
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 267 VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVD 326
VVG G+GKS+L+N+L +V V+D G T + ++++ VKL L VD
Sbjct: 2 VVGRGGVGKSSLLNALL------GGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VD 53
Query: 327 TPGFGDSINSEESWRA 342
TPG + A
Sbjct: 54 TPGLDEFGGLGREELA 69
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|201420 pfam00735, Septin, Septin | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 19/24 (79%), Positives = 20/24 (83%)
Query: 135 GSNTVIEVAGTKVRGRQYPWGVVE 158
GSNT IE G KVRGR+YPWGVVE
Sbjct: 207 GSNTEIENDGKKVRGRKYPWGVVE 230
|
Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 135 GSNTVIEVAGTKVRGRQYPWGVVE 158
GSN +EV G KVRGR+YPWGVVE
Sbjct: 207 GSNEEVEVNGKKVRGRKYPWGVVE 230
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 18/99 (18%)
Query: 243 IGFATLPEQVHRK------SVKKGFDFTL--MVVGESGLGKSTLVNSLFLSDLYGDRKVP 294
+GF P+ K +KK DF+L +V+G++G+GKS+ +NS+F G+RKV
Sbjct: 4 VGFQFFPDATQTKLHELEAKLKKELDFSLTILVLGKTGVGKSSTINSIF-----GERKV- 57
Query: 295 NVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333
+V+ Q +T + S ++ G K L ++DTPG +S
Sbjct: 58 SVSAFQSETLRPREVSRTVD--GFK--LNIIDTPGLLES 92
|
The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 268 VGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDT 327
+G++G GKS+L N+LF ++ V V DR+ T + G L ++D
Sbjct: 3 MGKTGAGKSSLCNALFGTE------VAAVGDRRPTTRAAQAYVWQTGGDG----LVLLDL 52
Query: 328 PGFGDS 333
PG G+
Sbjct: 53 PGVGER 58
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 240 YSDIGFATL----PEQVHRKSVKKGF-DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 294
Y DIG+ L + + + +++G+SG+GKSTL+N+L L +L ++K
Sbjct: 137 YEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINAL-LPEL--NQKTG 193
Query: 295 NV--NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330
+ +G+ TT + + G ++DTPGF
Sbjct: 194 EISEKLGRGRHTTTHVELFPLPGGGW-----IIDTPGF 226
|
Length = 301 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVK 319
T ++ G+SG+GKSTL+N+L L +L D + ++++ +G+ TT + + G+
Sbjct: 35 GKTSVLAGQSGVGKSTLLNAL-LPEL--DLRTGEISEKLGRGRHTTTHVELFPLPGGGL- 90
Query: 320 LRLTVVDTPGF 330
++DTPGF
Sbjct: 91 ----LIDTPGF 97
|
Length = 161 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLT 323
+ +VG +GKSTL+N+L KV V+D G T + + ++
Sbjct: 1 RVALVGRPNVGKSTLINALT------GAKVAIVSDYPGTTRDPILGVLGL-----GRQII 49
Query: 324 VVDTPGF 330
+VDTPG
Sbjct: 50 LVDTPGL 56
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 14/71 (19%)
Query: 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK----TTTIEKKSMDIEERGVK 319
T ++VG+SG+GKSTL+N+L L +L ++++ G+ TT E + G+
Sbjct: 87 TSVLVGQSGVGKSTLLNAL-LPEL--VLATGEISEKLGRGRHTTTHRE--LFPLPGGGL- 140
Query: 320 LRLTVVDTPGF 330
++DTPGF
Sbjct: 141 ----IIDTPGF 147
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 19/83 (22%)
Query: 264 TLMVVGESGLGKSTLVNSL-----FLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318
L++VG++G GKS N++ F S L G T T +K+S + R
Sbjct: 2 RLVLVGKTGNGKSATGNTILGRKVFESKLSA----------SGVTKTCQKESAVWDGR-- 49
Query: 319 KLRLTVVDTPGFGDSINSEESWR 341
R+ V+DTPG D+ S E
Sbjct: 50 --RVNVIDTPGLFDTSVSPEQLS 70
|
This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 267 VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVD 326
+ G +GKS+L+N+L + V V+ G T +K ++ G + ++D
Sbjct: 2 IFGRPNVGKSSLLNALL------GQNVGIVSPIPGTTRDPVRKEWELLPLG---PVVLID 52
Query: 327 TPGFGDSINSEE 338
TPG +
Sbjct: 53 TPGLDEEGGLGR 64
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 135 GSNTVIEVAGTKVRGRQYPWGVVE 158
GSNT IE G +VRGR+YPWGVVE
Sbjct: 228 GSNTEIENGGEQVRGRKYPWGVVE 251
|
Length = 373 |
| >gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 5e-04
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 39/111 (35%)
Query: 239 PYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGESGLGKSTLVNSLFLSDLY 288
Y IG+ V S K+G ++ G+SG+GKSTL+N+L
Sbjct: 136 LYRAIGY-----DVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKSTLLNAL------ 184
Query: 289 GDRKVPNVNDR---------QGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330
P++ + +GK TT + D+ G ++DTPGF
Sbjct: 185 ----APDLELKTGEISEALGRGKHTTTHVELYDLPGGG-----LLIDTPGF 226
|
Length = 298 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVV 325
+++G +G GKS+L+N+LF ++ KV + + + L +
Sbjct: 43 LLMGATGAGKSSLINALFQGEVKEVSKVG---------VGTDITTRLRLSYDGEN-LVLW 92
Query: 326 DTPGFGDSINSEESWRACCSYID 348
DTPG GD + + R Y D
Sbjct: 93 DTPGLGDGKDKDAEHRQ--LYRD 113
|
Length = 296 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| KOG2655|consensus | 366 | 100.0 | ||
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 100.0 | |
| KOG1547|consensus | 336 | 100.0 | ||
| KOG3859|consensus | 406 | 100.0 | ||
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 100.0 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.97 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.97 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.96 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.96 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.96 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.96 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.95 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.95 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.95 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.95 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.94 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.93 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.93 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.92 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.92 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.91 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.91 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.91 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.91 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.91 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.91 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.91 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.91 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.91 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.91 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.9 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.9 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.9 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.9 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.9 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.9 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.9 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.89 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.89 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.89 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.89 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.89 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.89 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.89 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.89 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.89 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.89 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.88 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.88 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.88 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.88 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.88 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.88 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.88 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.88 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.88 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.88 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.88 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.88 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.88 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.88 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.88 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.88 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.88 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.88 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.88 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.87 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.87 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.87 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.87 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.87 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.87 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.87 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.87 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.87 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.87 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.87 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.87 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.87 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.87 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.87 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.87 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.87 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.87 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.87 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.87 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.87 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.87 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.87 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.86 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.86 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.86 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.86 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.86 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.86 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.86 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.86 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.86 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.86 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.86 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.86 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.86 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.86 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.86 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.86 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.85 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.85 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.85 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.85 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.85 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.85 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.85 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.85 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.85 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.85 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.85 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.85 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.85 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.85 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.85 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.85 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| KOG0061|consensus | 613 | 99.85 | ||
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.85 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.85 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.85 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.85 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.85 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.84 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.84 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.84 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.84 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.84 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.84 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.84 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.84 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.84 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.84 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.84 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.84 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.84 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.84 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.84 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.83 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.83 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.83 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.83 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.83 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.83 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.83 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.83 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.83 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.83 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.83 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.83 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.83 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.83 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.83 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.83 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.83 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.83 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.83 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.82 | |
| KOG0058|consensus | 716 | 99.82 | ||
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.82 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.82 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.82 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.82 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.82 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.82 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.82 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.82 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.82 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.82 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.81 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.81 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.81 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.81 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.81 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.81 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.81 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.81 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.81 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.81 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.81 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.81 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.81 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.81 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.81 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.81 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.8 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.8 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.8 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.8 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.8 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.8 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.8 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.8 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.8 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.8 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.8 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.8 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.8 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.8 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.8 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.8 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| KOG0055|consensus | 1228 | 99.79 | ||
| KOG0057|consensus | 591 | 99.79 | ||
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.79 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.79 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.79 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.79 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.79 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.79 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.78 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.78 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.78 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.78 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.78 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.78 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.78 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.78 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.78 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.78 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.78 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.78 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.78 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.78 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.78 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.78 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.78 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.78 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.78 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.78 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.78 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.77 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.77 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.77 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.77 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.77 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.77 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.77 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.77 | |
| KOG0065|consensus | 1391 | 99.77 | ||
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.77 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.77 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.77 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.76 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.76 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.76 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.76 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.76 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.76 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.75 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.75 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.75 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.75 | |
| KOG0056|consensus | 790 | 99.75 | ||
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.75 | |
| KOG0055|consensus | 1228 | 99.75 | ||
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.75 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.74 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.74 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.74 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.74 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.73 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.73 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.73 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.73 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.73 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.73 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.73 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.72 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.72 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.72 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.72 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.71 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.71 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.7 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.7 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.7 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.7 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.7 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.7 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.69 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.69 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.68 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.68 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.68 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.68 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.68 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.68 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.67 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.67 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.66 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.66 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.63 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.63 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.63 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.63 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.63 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.63 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.62 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.62 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.6 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.59 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.59 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.58 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.58 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.57 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.57 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.56 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.55 | |
| KOG0059|consensus | 885 | 99.55 | ||
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.55 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.54 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.51 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.51 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.5 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.47 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.45 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.45 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.4 | |
| KOG0054|consensus | 1381 | 99.38 | ||
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.36 | |
| KOG0054|consensus | 1381 | 99.35 | ||
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.31 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.25 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.25 | |
| KOG0062|consensus | 582 | 99.24 | ||
| KOG2655|consensus | 366 | 99.24 | ||
| KOG0927|consensus | 614 | 99.23 | ||
| KOG0066|consensus | 807 | 99.16 | ||
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.15 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.11 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.08 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.07 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.07 | |
| KOG0065|consensus | 1391 | 99.06 | ||
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.05 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.05 | |
| KOG0927|consensus | 614 | 99.03 | ||
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.03 | |
| KOG0060|consensus | 659 | 98.97 | ||
| KOG1547|consensus | 336 | 98.97 | ||
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.95 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 98.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.88 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 98.86 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 98.82 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.82 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 98.7 | |
| KOG3859|consensus | 406 | 98.69 | ||
| KOG2355|consensus | 291 | 98.69 | ||
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.65 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.64 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 98.61 | |
| KOG0064|consensus | 728 | 98.53 | ||
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.3 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 98.27 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.2 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 98.19 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.19 | |
| KOG0066|consensus | 807 | 98.18 | ||
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.17 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.12 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.1 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 98.1 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.07 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 98.01 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 97.96 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.91 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 97.9 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 97.89 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 97.88 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 97.88 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 97.82 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 97.79 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.76 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.67 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.64 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 97.6 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.58 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.57 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.52 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.51 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 97.51 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.51 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.5 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.48 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.48 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 97.45 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.45 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 97.39 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 97.36 | |
| PRK11545 | 163 | gntK gluconate kinase 1; Provisional | 97.36 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 97.35 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 97.35 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 97.33 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.32 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 97.32 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 97.31 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 97.3 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 97.29 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 97.27 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 97.27 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 97.24 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 97.23 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.23 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.2 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 97.18 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.18 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 97.18 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 97.17 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 97.16 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 97.16 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.16 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.15 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 97.15 | |
| KOG0062|consensus | 582 | 97.14 | ||
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 97.14 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.13 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 97.13 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 97.12 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 97.1 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 97.06 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 97.06 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 97.06 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 97.04 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.04 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 97.03 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 97.03 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 97.02 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 97.01 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 97.0 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 96.99 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 96.99 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 96.96 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 96.95 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 96.95 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 96.94 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 96.94 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 96.94 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 96.93 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 96.92 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 96.91 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 96.91 |
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=490.74 Aligned_cols=298 Identities=42% Similarity=0.679 Sum_probs=244.6
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+|||+++|+|++++++|+||.|++||+|+||+|||||||+||++++..+..++.++....+++.|....+.++|+|++++
T Consensus 1 ~vg~~~lP~q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~ 80 (366)
T KOG2655|consen 1 YVGFANLPNQVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLN 80 (366)
T ss_pred CCccccChHHHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEe
Confidence 58999999999999999999999999999999999999999999988887778888888889999999999999999999
Q ss_pred EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee----------------ccccchhhhh-cccceeE
Q psy91 322 LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI----------------EKKSMDIEER-GVKLRLT 384 (541)
Q Consensus 322 L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i----------------~~~~~di~~~-~l~~rvn 384 (541)
|+|+|||||||.++|+.||.||++||++||++||.+|++..|+.+. .+.++|++.| +++.+||
T Consensus 81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vN 160 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVN 160 (366)
T ss_pred eEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999998774322 2467899886 7999999
Q ss_pred EEcCCCCCCCCCcHHHH---HHHHHHHHHHhhhcc---Cccc--c-----------cccccccchhhh-----hhhccCC
Q psy91 385 VVDTPGFGDSINSEESW---RACCSYIDDQFRQYF---NDES--G-----------LNRKNIVDNRFA-----TNRHRNN 440 (541)
Q Consensus 385 vIpvi~k~D~lt~~e~~---~~i~~~i~~~~~~~~---~~e~--~-----------~~~~~i~d~~v~-----~~~~~~~ 440 (541)
+||+|+|||+||.+|+. +.|.+.|..+-+..+ .+++ . .+...+..+.+. +.++++.
T Consensus 161 iIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~d~~~~~~~~~l~~~~PFAIigs~~~~e~~G~~~vrgR~ 240 (366)
T KOG2655|consen 161 LIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDESDEELKEEEQDLKSSIPFAIIGSNTEIEEKGKKRVRGRK 240 (366)
T ss_pred ccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcchhhhHHHHHHHhhcCCeEEEecCceeecCCceEeecee
Confidence 99999999999999983 356666665433222 2221 0 011122222211 2255668
Q ss_pred CCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCCc----ccccC-CCCC----CCCch
Q psy91 441 APT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDR----GKLKK-DSAP----DGLIT 510 (541)
Q Consensus 441 ~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~~----~~~~~-~~~~----~~~~~ 510 (541)
||| +|+|||++||||.+||+|||+|||+||+++|+++||||||+++|+......+. +++.. +..+ ..++.
T Consensus 241 YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~~T~~~~YEnYR~~~L~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 320 (366)
T KOG2655|consen 241 YPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKDTTNNLLYENYRTEKLEGLLYKGENGEHEARLKNDELALEKVITQKVK 320 (366)
T ss_pred cCCceeeccCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccCCchhhhhhhcccchhhHHHHhhhhh
Confidence 999 99999999999999999999999999999999999999999999998865532 23333 2222 24555
Q ss_pred hhHHHhhhchHHH-HHHHHHHHHHHHhHhh
Q psy91 511 ETDRLLLEKDEEL-VKSTIIISALNAPKQQ 539 (541)
Q Consensus 511 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 539 (541)
|++..+++++++| |+|++|+++|++|+++
T Consensus 321 e~~~~~~~~e~~l~~~~~e~~~~l~~~~~~ 350 (366)
T KOG2655|consen 321 EKEDRLRQEEEELIRRHQEMKKKLEAQMQE 350 (366)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777666 9999999999999985
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=442.41 Aligned_cols=298 Identities=33% Similarity=0.569 Sum_probs=234.9
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC-CCCcceEEeeeEEEeeecCee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND-RQGKTTTIEKKSMDIEERGVK 319 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~-g~~q~v~I~~~~~~i~e~gv~ 319 (541)
.+||+.++|.|++++..++|+.|++||+|++|+|||||+|+||.+.+..+.......+ +..+++.|....+.++|+|++
T Consensus 2 ~~vgi~~l~~~r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~ 81 (373)
T COG5019 2 GYVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFH 81 (373)
T ss_pred CcCCcCcchHHHHHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeE
Confidence 5789999999999999999999999999999999999999999986555432222222 367899999999999999999
Q ss_pred eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee-----------------ccccchhhhh-cccc
Q psy91 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI-----------------EKKSMDIEER-GVKL 381 (541)
Q Consensus 320 ~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i-----------------~~~~~di~~~-~l~~ 381 (541)
++|+|+|||||||.++|+.||.||++||++||++||.+|++..|+..+ ...++||+.| +++.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~ 161 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK 161 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998876221 2467888885 7999
Q ss_pred eeEEEcCCCCCCCCCcHHH--H-HHHHHHHHHHhhhccC----cccc---c----------ccccccchhhh----hhhc
Q psy91 382 RLTVVDTPGFGDSINSEES--W-RACCSYIDDQFRQYFN----DESG---L----------NRKNIVDNRFA----TNRH 437 (541)
Q Consensus 382 rvnvIpvi~k~D~lt~~e~--~-~~i~~~i~~~~~~~~~----~e~~---~----------~~~~i~d~~v~----~~~~ 437 (541)
+||+||||||||+||.+|+ + +.|.+.+..+-...|. |+.. . +...|.++... +..+
T Consensus 162 ~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vr 241 (373)
T COG5019 162 RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPEDDEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVR 241 (373)
T ss_pred ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCccccchhhHHHHHHHhhcCCeEEEeccceeccCCceee
Confidence 9999999999999999998 2 3555556554333332 2211 0 01112221111 3356
Q ss_pred cCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCC-------cccccC-CCCC---
Q psy91 438 RNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGD-------RGKLKK-DSAP--- 505 (541)
Q Consensus 438 ~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~-------~~~~~~-~~~~--- 505 (541)
+|.||| +|+|||++||||..||++||++||+||++.|++.|||+||+++|.......+ .+++.. +..+
T Consensus 242 gR~YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 321 (373)
T COG5019 242 GRKYPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKK 321 (373)
T ss_pred eeccCCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhhhhccHHHHhHHHHHHHHH
Confidence 778999 9999999999999999999999999999999999999999999998775432 111111 0011
Q ss_pred -CCCchhhHHHhhhchHHH-HHHHHHHHHHHHhHh
Q psy91 506 -DGLITETDRLLLEKDEEL-VKSTIIISALNAPKQ 538 (541)
Q Consensus 506 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 538 (541)
.+++.++|+.+++.|++| .++++|.++|.++-+
T Consensus 322 ~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~ 356 (373)
T COG5019 322 FTEKIREKEKRLEELEQNLIEERKELNSKLEEIQK 356 (373)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 166788999999999998 777777777766544
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=402.46 Aligned_cols=254 Identities=37% Similarity=0.587 Sum_probs=201.5
Q ss_pred CCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe
Q psy91 239 PYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318 (541)
Q Consensus 239 ~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv 318 (541)
..+||||.+.-+|+.++++|.||.||+||||.||+||||++|+||.+.+......+.......+|++|......|+|+||
T Consensus 23 ~lgyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 23 LLGYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ccccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce
Confidence 35899999999999999999999999999999999999999999998866554444444578999999999999999999
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcce-----------------eeccccchhhh-hccc
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT-----------------TIEKKSMDIEE-RGVK 380 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~-----------------~i~~~~~di~~-~~l~ 380 (541)
+++|+++|||||||.+||..||+||.+||.+|+.+||++|..+.|.- -..++++||+. +|++
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt 182 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT 182 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999996544321 12357889998 5899
Q ss_pred ceeEEEcCCCCCCCCCcHHH--H-HHHHHHHHHH-hhhccCccccc-------ccc---cc-----c-chhhh---hhhc
Q psy91 381 LRLTVVDTPGFGDSINSEES--W-RACCSYIDDQ-FRQYFNDESGL-------NRK---NI-----V-DNRFA---TNRH 437 (541)
Q Consensus 381 ~rvnvIpvi~k~D~lt~~e~--~-~~i~~~i~~~-~~~~~~~e~~~-------~~~---~i-----~-d~~v~---~~~~ 437 (541)
.-|||||||+|+|+||.+|. | +.|.+.+..+ ++-|..++... |.+ .| . |+.+. +.+.
T Consensus 183 ~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG~~vl 262 (336)
T KOG1547|consen 183 EVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNGRRVL 262 (336)
T ss_pred hhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEcCeEee
Confidence 99999999999999999886 2 2333333222 22232222111 110 01 0 11110 2222
Q ss_pred cCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccc
Q psy91 438 RNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ 492 (541)
Q Consensus 438 ~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~ 492 (541)
++.-+| ++||||.+||||++||++||+||||||||.|+.+|||+||+.+|..+..
T Consensus 263 GRktrWg~IeVen~nhCeF~~LRdfliRtHlQdlke~Ts~iHyE~yR~krLn~~~~ 318 (336)
T KOG1547|consen 263 GRKTRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETTSNIHYETYRAKRLNELKE 318 (336)
T ss_pred ccccccceEEecccccchhHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhhcC
Confidence 334455 9999999999999999999999999999999999999999999998653
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=388.82 Aligned_cols=253 Identities=32% Similarity=0.518 Sum_probs=210.0
Q ss_pred CCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec
Q psy91 237 SIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316 (541)
Q Consensus 237 ~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~ 316 (541)
-...++|||.++|+|+..+++..||.||||++|++|+|||||+++||++.+-.. .|.+....|.+...++.+.|.
T Consensus 17 l~l~GHvGFdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~-----p~~H~~~~V~L~~~TyelqEs 91 (406)
T KOG3859|consen 17 LQLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESE-----PSTHTLPNVKLQANTYELQES 91 (406)
T ss_pred eeecCccCcccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCC-----CCccCCCCceeecchhhhhhc
Confidence 356789999999999999999999999999999999999999999999884322 344556778899999999999
Q ss_pred CeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee------------------eccccchhhhh-
Q psy91 317 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT------------------IEKKSMDIEER- 377 (541)
Q Consensus 317 gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~------------------i~~~~~di~~~- 377 (541)
+|+++|+|+||-||||.+|...+++||++|||.||+.||++|.++.|... +.++.+|+..+
T Consensus 92 nvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk 171 (406)
T KOG3859|consen 92 NVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMK 171 (406)
T ss_pred CeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877521 23466787764
Q ss_pred cccceeEEEcCCCCCCCCCcHHHHH---HHHHHHHHH---hhhccCccccccc-----------ccccchhhh----hhh
Q psy91 378 GVKLRLTVVDTPGFGDSINSEESWR---ACCSYIDDQ---FRQYFNDESGLNR-----------KNIVDNRFA----TNR 436 (541)
Q Consensus 378 ~l~~rvnvIpvi~k~D~lt~~e~~~---~i~~~i~~~---~~~~~~~e~~~~~-----------~~i~d~~v~----~~~ 436 (541)
.+..+|||||+|+|+|++..+|+.+ .|++.+..+ +.+|..|+..... ..+.+.... +.+
T Consensus 172 ~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~vKvgnkmv 251 (406)
T KOG3859|consen 172 KLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEVKVGNKMV 251 (406)
T ss_pred HHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHhhcCCceeEecchHhhhhhhhhh
Confidence 7999999999999999999999832 466555543 4555555443221 122222111 334
Q ss_pred ccCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccC
Q psy91 437 HRNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG 494 (541)
Q Consensus 437 ~~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~ 494 (541)
+.|.||| +|.|||+.||||++||+|||+++|+||++.||..|||.||..+|.+|+...
T Consensus 252 raRqyPwG~v~vENE~HCDFVKLREmLirtNmedlReqTHtrhYElyRr~kL~~Mgf~d 310 (406)
T KOG3859|consen 252 KARQYPWGTVQVENELHCDFVKLREMLIRTNMEDLREQTHTRHYELYRRCKLEEMGFKD 310 (406)
T ss_pred hhccCCCCceeecchhhhHHHHHHHHHccccHHHHhhhccccchHHHHHHHHHHcCCcc
Confidence 5668999 999999999999999999999999999999999999999999999998543
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=385.07 Aligned_cols=236 Identities=39% Similarity=0.671 Sum_probs=172.4
Q ss_pred hccceeeEeccCCcchhHHHHhhhcccccCCCC-CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR-KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 259 ~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~-~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+|+.|+|||+|++|+|||||||+||...+.... ..+..+....+++.|....+.++|+|++++|+|+|||||||.+++.
T Consensus 1 kg~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~ 80 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNS 80 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccch
Confidence 689999999999999999999999998866553 2233344667788999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhcccCccee-----------e-----ccccchhhhh-cccceeEEEcCCCCCCCCCcHHH
Q psy91 338 ESWRACCSYIDDQFRQYFNDENRQGKTTT-----------I-----EKKSMDIEER-GVKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 338 ~~~~~i~~yI~~~~~~~l~~e~~~~rt~~-----------i-----~~~~~di~~~-~l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
.||.+|++||++||.+||.+|.+..|... + ..+++||+.+ +++.+|||||+|+|||+||.+|+
T Consensus 81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 81 DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccccEEeEEecccccCHHHH
Confidence 99999999999999999999988766311 1 2347788875 79999999999999999999998
Q ss_pred ---HHHHHHHHHHHhhhccC---cccc-------------cccccccchhhh-----hhhccCCCCc-ccccCCCCcccH
Q psy91 401 ---WRACCSYIDDQFRQYFN---DESG-------------LNRKNIVDNRFA-----TNRHRNNAPT-PSQVENPKHSDF 455 (541)
Q Consensus 401 ---~~~i~~~i~~~~~~~~~---~e~~-------------~~~~~i~d~~v~-----~~~~~~~~p~-~veven~~h~DF 455 (541)
.+.|.+.+.+.-..++. ++.. .+...+..+... +..++|.||| +|||||++||||
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f~~~~~~~~e~~~~~~~~~~~PFavi~s~~~~~~~~g~~~~gR~YpWG~vev~n~~hsDF 240 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDFPEDDDDDEEIEENQKIRSMLPFAVIGSNTEIENSNGKRVRGRKYPWGTVEVENPEHSDF 240 (281)
T ss_dssp HHHHHHHHHHHHHTT--S----------HCHHHHHHHHHC-SEEE---SSEEEE-SSSEEEEEEETTEEEETT-TTTSSH
T ss_pred HHHHHHHHHHHHHcCceeeccccccccccccccccccccceeeEEEecceeeeccCCcEEeeeecCCccccccccccccH
Confidence 23555555543332221 1111 011122222211 2344568999 999999999999
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccC
Q psy91 456 NKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG 494 (541)
Q Consensus 456 ~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~ 494 (541)
.+||++||++||+|||+.|+++|||+||+++|++....+
T Consensus 241 ~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~L~~~~~~~ 279 (281)
T PF00735_consen 241 LKLRNLLLGTHLQDLKDSTENVHYENYRTEKLSSRKNKQ 279 (281)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH----
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhchhcc
Confidence 999999999999999999999999999999999877543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=341.00 Aligned_cols=232 Identities=41% Similarity=0.655 Sum_probs=176.6
Q ss_pred hccceeeEeccCCcchhHHHHhhhcccccCCCCCC-CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV-PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 259 ~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~-~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+|+.|+|||+|++|+|||||+|+||...+...... ........+++.+......++++|+..+|+|+|||||||.+++.
T Consensus 1 ~g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence 58999999999999999999999998875543221 11223457788888888889999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhcccCcce------------eec-----cccchhhh-hcccceeEEEcCCCCCCCCCcHH
Q psy91 338 ESWRACCSYIDDQFRQYFNDENRQGKTT------------TIE-----KKSMDIEE-RGVKLRLTVVDTPGFGDSINSEE 399 (541)
Q Consensus 338 ~~~~~i~~yI~~~~~~~l~~e~~~~rt~------------~i~-----~~~~di~~-~~l~~rvnvIpvi~k~D~lt~~e 399 (541)
.+|++|++||++||..|+.++.+..|.. .+. ..+.|++. +.++..+++|++++|+|.++.++
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e 160 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEE 160 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHH
Confidence 9999999999999999999998665521 011 12344554 35666899999999999999777
Q ss_pred HH---HHHHHHHHHHhhhccC---cccc-------------cccccccchhhh----hhhccCCCCc-ccccCCCCcccH
Q psy91 400 SW---RACCSYIDDQFRQYFN---DESG-------------LNRKNIVDNRFA----TNRHRNNAPT-PSQVENPKHSDF 455 (541)
Q Consensus 400 ~~---~~i~~~i~~~~~~~~~---~e~~-------------~~~~~i~d~~v~----~~~~~~~~p~-~veven~~h~DF 455 (541)
+. +.+.+.++.+-..++. ++.. .+...+..+.+. +.+++|.||| +||||||+||||
T Consensus 161 ~~~~k~~i~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Pfavi~s~~~~~~~g~~~~~R~y~WG~~~v~n~~h~df 240 (276)
T cd01850 161 LKEFKQRIMEDIEEHNIKIYKFPEDEEDDETIEENKKLRSLIPFAVVGSNEEVEVNGKKVRGRKYPWGVVEVENEEHCDF 240 (276)
T ss_pred HHHHHHHHHHHHHHcCCceECCCCCcccHHHHHHHHhhccCCCcEEEecCceeecCCcEEEEecCCccEEeecCcccccH
Confidence 52 3445555544333332 1110 111122222221 3345678999 999999999999
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhc
Q psy91 456 NKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQI 490 (541)
Q Consensus 456 ~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~ 490 (541)
.+||++||++||+||++.|+++|||+||+++|..+
T Consensus 241 ~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~l~~~ 275 (276)
T cd01850 241 VKLRNLLIRTHLQDLKETTHNVHYENYRTEKLSSR 275 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999865
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=263.24 Aligned_cols=200 Identities=21% Similarity=0.243 Sum_probs=167.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||++.||+..+|+|||++| +|+|||||||||||||| +..+++|+|+ ++|..+.... .....
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~---i~g~~~~~~~---~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT---VDGEDVGDKK---DILKL 75 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE---ECCEeccchh---hHHHH
Confidence 578999999999999999999999 99999999999999999 7788999999 8886332211 34456
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++.+|+|||+++||||+ ||.||+.++.. ..+.++.++.+.+..+|+.+||.+
T Consensus 76 R~~vGmVFQ~fnLFPHl------TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~--------------------- 128 (240)
T COG1126 76 RRKVGMVFQQFNLFPHL------TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD--------------------- 128 (240)
T ss_pred HHhcCeecccccccccc------hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh---------------------
Confidence 67899999999999999 99999999832 346678888889999999999875
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+.+|..+||||+|||+|+++
T Consensus 129 ----------------------------------------------------------ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 129 ----------------------------------------------------------KADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred ----------------------------------------------------------hhhhCccccCcHHHHHHHHHHH
Confidence 1234677899999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|++++.|||+.- ++..+-..+.+.+.+..+.+.|.++++|++.+.. .+..||.|.+
T Consensus 151 LaM------~P~vmLFDEPTSA-----------LDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr-~VadrviFmd 210 (240)
T COG1126 151 LAM------DPKVMLFDEPTSA-----------LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAR-EVADRVIFMD 210 (240)
T ss_pred HcC------CCCEEeecCCccc-----------CCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHH-HhhheEEEee
Confidence 999 9999999999654 2233444677778888889999999999988764 4888888876
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=244.23 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=162.7
Q ss_pred eeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|.|++|+++|++.+ +|+||||.| -|+|||||||||||++| ..+|+.|.|+ ++|.++. .+.+......
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~---~~~~dl~-~l~~~~iP~L 77 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL---VNGHDLS-RLKGREIPFL 77 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE---ECCeecc-cccccccchh
Confidence 78999999997544 999999999 89999999999999999 6689999999 8888553 3344455667
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++++|+||||+.|.++. ||+||++|+..-.+.+..+..+++.++|+.+||.+-
T Consensus 78 RR~IGvVFQD~rLL~~~------tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k--------------------- 130 (223)
T COG2884 78 RRQIGVVFQDFRLLPDR------TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK--------------------- 130 (223)
T ss_pred hheeeeEeeeccccccc------hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh---------------------
Confidence 88999999999999999 999999999555667788899999999999999761
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
....|..+|+|++|+++||++.
T Consensus 131 ----------------------------------------------------------~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 131 ----------------------------------------------------------ARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ----------------------------------------------------------hhcCccccCchHHHHHHHHHHH
Confidence 1123567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 311 MDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+. +|.++|.||| |..|..... .+.+.|.+.++.+.|+++.+|+.++...
T Consensus 153 V~------~P~vLlADEPTGNLDp~~s~------------~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 153 VN------QPAVLLADEPTGNLDPDLSW------------EIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred cc------CCCeEeecCCCCCCChHHHH------------HHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 99 9999999999 666554443 6788888999999999999999998764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=254.27 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=156.7
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++++++.|+...+|+||||+| +|+||||||||||||+|+ ..++.|+|. +.|. .+ ...
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~---~~g~----~v-----~~p 70 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL---LDGR----PV-----TGP 70 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCc----cc-----CCC
Confidence 578999999999999999999999 999999999999999994 467788888 8787 22 233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
...++||||++.|+|++ ||.+||.|+....+.++.+..+++..+|+.+||.+
T Consensus 71 ~~~~~~vFQ~~~LlPW~------Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~---------------------- 122 (248)
T COG1116 71 GPDIGYVFQEDALLPWL------TVLDNVALGLELRGKSKAEARERAKELLELVGLAG---------------------- 122 (248)
T ss_pred CCCEEEEeccCcccchh------hHHhhheehhhccccchHhHHHHHHHHHHHcCCcc----------------------
Confidence 45689999999999999 99999999944344566777778999999999987
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.+.+|..+|||++|||+|++++
T Consensus 123 ---------------------------------------------------------~~~~~P~qLSGGMrQRVaiARAL 145 (248)
T COG1116 123 ---------------------------------------------------------FEDKYPHQLSGGMRQRVAIARAL 145 (248)
T ss_pred ---------------------------------------------------------hhhcCccccChHHHHHHHHHHHH
Confidence 33456788999999999999999
Q ss_pred EEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++++||| |..|+.... .+.+.+.+.. +.+.|+++++|+++ |.-.++.||.++.
T Consensus 146 ~~------~P~lLLlDEPFgALDalTR~------------~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~ 205 (248)
T COG1116 146 AT------RPKLLLLDEPFGALDALTRE------------ELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLS 205 (248)
T ss_pred hc------CCCEEEEcCCcchhhHHHHH------------HHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEec
Confidence 99 9999999999 888776554 3344444443 34688999999876 3456777887763
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-31 Score=250.83 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=166.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+|+||++.|+++.+++++||+| +++|||||||||+|++| +..|++|+|+ ++|+ .+...+....+
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~---i~g~----~i~~~d~~~LR 74 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL---IDGE----DISDLDPVELR 74 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE---ECCe----ecccCCHHHHH
Confidence 78999999999999999999999 99999999999999999 7889999999 9998 44444444567
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+|||-|...||||+ ||.||+++-....++.++.+.++++++|.++||...
T Consensus 75 r~IGYviQqigLFPh~------Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------------------- 126 (309)
T COG1125 75 RKIGYVIQQIGLFPHL------TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------------------- 126 (309)
T ss_pred HhhhhhhhhcccCCCc------cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH----------------------
Confidence 7899999999999999 999999986444567888899999999999998630
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.|.+++|..+|||++||+.++++++
T Consensus 127 -------------------------------------------------------~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 127 -------------------------------------------------------EYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred -------------------------------------------------------HHhhcCchhcCcchhhHHHHHHHHh
Confidence 1567788999999999999999999
Q ss_pred EeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|++++.||| |..|.++.. ++-+.+.+.. +.++|+++++|++| +..++..|+-+.+
T Consensus 152 a------dP~ilLMDEPFgALDpI~R~------------~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~ 210 (309)
T COG1125 152 A------DPPILLMDEPFGALDPITRK------------QLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD 210 (309)
T ss_pred c------CCCeEeecCCccccChhhHH------------HHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec
Confidence 8 9999999999 998888776 3444444443 45899999999988 4445666766654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-30 Score=263.26 Aligned_cols=197 Identities=19% Similarity=0.350 Sum_probs=158.5
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|++++|+++||+..+|+|||++| +|+||||||||||||+| +..|++|+|. ++|+ .+.+.+
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~---l~G~----~i~~lp-- 73 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL---LDGE----DITDVP-- 73 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCE----ECCCCC--
Confidence 35789999999999999999999999 89999999999999999 4578899999 9999 444433
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+|.+|+|||+++||||+ ||.|||+|+.. .....+.++.+++.++++++|+.+
T Consensus 74 p~kR~ig~VFQ~YALFPHl------tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------------------- 128 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHM------TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------------------- 128 (352)
T ss_pred hhhcccceeecCcccCCCC------cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-------------------
Confidence 4567899999999999999 99999999943 233455668889999999999976
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++++..+||||+|||+++
T Consensus 129 ------------------------------------------------------------~~~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 129 ------------------------------------------------------------FADRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ------------------------------------------------------------hhhhChhhhChHHHHHHHHH
Confidence 33456778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
++++. +|+++++||| +..|. .+.+++...+.+..+ .+.|.++.+|+.+ +...++.++-|
T Consensus 149 RAL~~------~P~vLLLDEPlSaLD~------------kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~V 209 (352)
T COG3842 149 RALVP------EPKVLLLDEPLSALDA------------KLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAV 209 (352)
T ss_pred HHhhc------CcchhhhcCcccchhH------------HHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEE
Confidence 99999 9999999999 66553 333355555555543 4788999999866 33456666554
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
.
T Consensus 210 m 210 (352)
T COG3842 210 M 210 (352)
T ss_pred c
Confidence 3
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-30 Score=247.33 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=150.4
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+++|++.|+.. .+|++|||+| ||+|||||||||||++| +..|++|.|+ ++|+++.........
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~---i~g~d~~~l~~~~~~ 78 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL---INGKDLTKLSEKELA 78 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE---ECCEEcCcCCHHHHH
Confidence 4678999988643 6999999999 99999999999999999 6678999999 888744332222334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.+|||||+++|+|.+ ||.|||.++....+.+.....+++..++..+|+.+
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~l------tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~------------------- 133 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDL------TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED------------------- 133 (226)
T ss_pred HHHHHhEEEECccCCCCCCC------CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-------------------
Confidence 45677899999999999999 99999998733333333345556666777777754
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
...+.++..+|||++|||+|+
T Consensus 134 -----------------------------------------------------------~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 134 -----------------------------------------------------------RLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred -----------------------------------------------------------hhccCCchhcCHHHHHHHHHH
Confidence 122345778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhh
Q psy91 308 KKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEE 376 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~ 376 (541)
++++. +|+|++.||| |..|..+.. .+.+.|.+.++. +.++++++|+.++..
T Consensus 155 RAL~~------~P~iilADEPTgnLD~~t~~------------~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 155 RALIN------NPKIILADEPTGNLDSKTAK------------EVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHhc------CCCeEEeeCccccCChHHHH------------HHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 99999 9999999999 666666555 667777777655 789999999988876
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-30 Score=250.32 Aligned_cols=201 Identities=19% Similarity=0.253 Sum_probs=168.5
Q ss_pred eeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
|++++|++.|.. ..+|+||||+| +|||.||||||||+|++ +..|++|+|. ++|+++. .++...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~---v~G~di~-~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF---VDGQDLT-ALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE---EcCEecc-cCChHH
Confidence 789999999986 36999999999 99999999999999999 8889999999 8887543 345556
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.+..++.+|++||+++|+... ||.+|++|+....+.++.++.+++.++++++||.+
T Consensus 78 Lr~~R~~IGMIFQhFnLLssr------TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d------------------ 133 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSR------TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD------------------ 133 (339)
T ss_pred HHHHHhhccEEeccccccccc------hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 667788999999999999999 99999999955566788999999999999999975
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..+++|.++||||+|+|.|
T Consensus 134 -------------------------------------------------------------k~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 134 -------------------------------------------------------------KADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred -------------------------------------------------------------hhccCchhcCcchhhHHHH
Confidence 2345678899999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +|+++++|||+.-.+..... .+.+.|.+.++ .+-|+.+.+|.+|+. ++++.||-+
T Consensus 153 ARALa~------~P~iLL~DEaTSALDP~TT~-----------sIL~LL~~In~~lglTIvlITHEm~Vv-k~ic~rVav 214 (339)
T COG1135 153 ARALAN------NPKILLCDEATSALDPETTQ-----------SILELLKDINRELGLTIVLITHEMEVV-KRICDRVAV 214 (339)
T ss_pred HHHHhc------CCCEEEecCccccCChHHHH-----------HHHHHHHHHHHHcCCEEEEEechHHHH-HHHhhhheE
Confidence 999999 99999999996655444443 56666777654 478899999999965 457788777
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 215 m~ 216 (339)
T COG1135 215 LD 216 (339)
T ss_pred ee
Confidence 65
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-29 Score=233.96 Aligned_cols=204 Identities=19% Similarity=0.230 Sum_probs=161.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|++++|+++||++.||+||||+| +|+||||||||||||+| +.+|++|+|+ +.|.++.. .......
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~---i~G~~i~~-ls~~~~~ 81 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL---IDGEDIPQ-LSEEELY 81 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE---EcCcchhc-cCHHHHH
Confidence 56899999999999999999999999 99999999999999999 5678999999 88885432 2222223
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++++|++||+.+||..+ ||+||++|... ....++....+.+...|+.+||.+.
T Consensus 82 ~ir~r~GvlFQ~gALFssl------tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~------------------ 137 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSL------TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA------------------ 137 (263)
T ss_pred HHHhheeEEeecccccccc------chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh------------------
Confidence 4456899999999999999 99999999832 2356777777888888999998751
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..+..|..+|||+++|+++|
T Consensus 138 ------------------------------------------------------------~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 138 ------------------------------------------------------------AADLYPSELSGGMRKRVALA 157 (263)
T ss_pred ------------------------------------------------------------hhhhCchhhcchHHHHHHHH
Confidence 12335778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++.+. +|+|+++|||+.|.+.-... .|.+.+.+.++ .+-|+++.+|+++-. ..++.++.++
T Consensus 158 RAial------dPell~~DEPtsGLDPI~a~-----------~~~~LI~~L~~~lg~T~i~VTHDl~s~-~~i~Drv~~L 219 (263)
T COG1127 158 RAIAL------DPELLFLDEPTSGLDPISAG-----------VIDELIRELNDALGLTVIMVTHDLDSL-LTIADRVAVL 219 (263)
T ss_pred HHHhc------CCCEEEecCCCCCCCcchHH-----------HHHHHHHHHHHhhCCEEEEEECChHHH-HhhhceEEEE
Confidence 99998 99999999998887654443 44455544443 478899999987733 3477777776
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-29 Score=250.49 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=159.2
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||++.||+..+|+++|++| +|+||||||||||||+|+ ..+++|+|. ++|+ .++..+ ..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~---i~g~----~vt~l~--P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL---IDGR----DVTDLP--PE 73 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCE----ECCCCC--hh
Confidence 589999999999876999999999 999999999999999994 467899999 9998 444433 34
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
.|.+++|||+++|||++ ||++|++|+....+.++.+..+++.++.+.+++.+
T Consensus 74 ~R~iamVFQ~yALyPhm------tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~---------------------- 125 (338)
T COG3839 74 KRGIAMVFQNYALYPHM------TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH---------------------- 125 (338)
T ss_pred HCCEEEEeCCccccCCC------cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh----------------------
Confidence 56899999999999999 99999999955566778889999999999988876
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+||||+|+|+|++++
T Consensus 126 ---------------------------------------------------------lL~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 126 ---------------------------------------------------------LLNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred ---------------------------------------------------------HHhcCcccCChhhHHHHHHHHHH
Confidence 33456788999999999999999
Q ss_pred EEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|++.++||| ...|+ -+..+++..+....+ .+.|+++.+|+.. +.+.+..++-+..
T Consensus 149 Vr------~P~v~L~DEPlSnLDa------------~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~ 208 (338)
T COG3839 149 VR------KPKVFLLDEPLSNLDA------------KLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN 208 (338)
T ss_pred hc------CCCEEEecCchhHhhH------------HHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe
Confidence 99 9999999999 44443 233355555655543 4678889998854 5566777766654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=232.75 Aligned_cols=192 Identities=20% Similarity=0.278 Sum_probs=153.3
Q ss_pred Cceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
..|+++||++.| +++.+|++|||+| |||||||||||||||+| +..++.|+|. ++|..+. ...+...+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~---~~g~~i~-~~~~k~lr 77 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL---FNGVQIT-KLKGKELR 77 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEE---ecccchh-ccchHHHH
Confidence 358999999999 7889999999999 99999999999999999 6678899999 8886332 23334455
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccc--------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.+++.+||+||+++|.+.+ +|.+||..+++.+. +..++....+-.+|+.+|+.+.
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~------sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~----------- 140 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRL------SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK----------- 140 (258)
T ss_pred HHHHhceeEeccCCccccc------HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------
Confidence 6678899999999999999 99999999865532 1223445556666777776431
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
.-.....+||||
T Consensus 141 --------------------------------------------------------------------A~qra~~LSGGQ 152 (258)
T COG3638 141 --------------------------------------------------------------------AYQRASTLSGGQ 152 (258)
T ss_pred --------------------------------------------------------------------HHHHhccCCcch
Confidence 112345689999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhh
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEE 376 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~ 376 (541)
+|||+|+++++. ++++++.||| .+.|..+.. +.+++|+++++. +.|+++.+|.+|+..
T Consensus 153 QQRVaIARaL~Q------~pkiILADEPvasLDp~~a~------------~Vm~~l~~in~~~g~Tvi~nLH~vdlA~ 212 (258)
T COG3638 153 QQRVAIARALVQ------QPKIILADEPVASLDPESAK------------KVMDILKDINQEDGITVIVNLHQVDLAK 212 (258)
T ss_pred hHHHHHHHHHhc------CCCEEecCCcccccChhhHH------------HHHHHHHHHHHHcCCEEEEEechHHHHH
Confidence 999999999999 9999999999 666666555 788889888754 789999999999875
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=238.66 Aligned_cols=198 Identities=19% Similarity=0.269 Sum_probs=157.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++++++.|+...++++|++.| |++||||||||||||+| +..|+.|.|. ++|+.+. +......+
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~---~~~~~l~---D~~~~~~~ 75 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR---LNGRVLF---DVSNLAVR 75 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE---ECCEecc---chhccchh
Confidence 467889999999999999999999 99999999999999999 4568899999 9998432 22223455
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++|||||++.||+|+ ||.+||+||.... ..++.+...++.++|.++.|.+
T Consensus 76 ~R~VGfvFQ~YALF~Hm------tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-------------------- 129 (345)
T COG1118 76 DRKVGFVFQHYALFPHM------TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-------------------- 129 (345)
T ss_pred hcceeEEEechhhcccc------hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc--------------------
Confidence 67899999999999999 9999999993111 2245667778888888888876
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.+++|.++||||+|++++++
T Consensus 130 -----------------------------------------------------------la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 130 -----------------------------------------------------------LADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred -----------------------------------------------------------hhhcCchhcChHHHHHHHHHH
Confidence 345577889999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. .|+++++||| |..|+. ....++++|.+... .+-++++.+|+.+ +..++..+|-+.
T Consensus 151 ALA~------eP~vLLLDEPf~ALDa~------------vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl 211 (345)
T COG1118 151 ALAV------EPKVLLLDEPFGALDAK------------VRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVL 211 (345)
T ss_pred Hhhc------CCCeEeecCCchhhhHH------------HHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEe
Confidence 9988 9999999999 665542 23367777777654 4778889998866 335677777664
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-27 Score=232.62 Aligned_cols=199 Identities=19% Similarity=0.256 Sum_probs=161.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++|+++.+|+|+||+| +|+|||||||||||++|+ ..|..|+|+ ++|+ .+.....+.+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~---l~g~----~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL---LDGK----DIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE---ECCC----chhhcCHHHH
Confidence 468899999999999999999999 999999999999999994 467799999 9998 5555556677
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccc--h--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--V--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++||+|.....+.+ ||+|.|.+||.|+. . ..++..+.+..+|+.+|+.+
T Consensus 75 Ak~ia~vpQ~~~~~~~~------tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~------------------ 130 (258)
T COG1120 75 AKKLAYVPQSPSAPFGL------TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH------------------ 130 (258)
T ss_pred hhhEEEeccCCCCCCCc------EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH------------------
Confidence 88999999999888889 99999999988742 1 23445557888888888865
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|||++|++.|
T Consensus 131 -------------------------------------------------------------la~r~~~~LSGGerQrv~i 149 (258)
T COG1120 131 -------------------------------------------------------------LADRPVDELSGGERQRVLI 149 (258)
T ss_pred -------------------------------------------------------------HhcCcccccChhHHHHHHH
Confidence 3344566799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++++|||+...++.+.- .+.+.+.+..+ .++++++.+|+++...+ .+.++.+
T Consensus 150 ArALaQ------~~~iLLLDEPTs~LDi~~Q~-----------evl~ll~~l~~~~~~tvv~vlHDlN~A~r-yad~~i~ 211 (258)
T COG1120 150 ARALAQ------ETPILLLDEPTSHLDIAHQI-----------EVLELLRDLNREKGLTVVMVLHDLNLAAR-YADHLIL 211 (258)
T ss_pred HHHHhc------CCCEEEeCCCccccCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHHH-hCCEEEE
Confidence 999999 99999999996655555543 56777888874 58999999999887654 5666665
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 212 lk 213 (258)
T COG1120 212 LK 213 (258)
T ss_pred EE
Confidence 53
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-27 Score=226.03 Aligned_cols=188 Identities=19% Similarity=0.285 Sum_probs=150.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|+++|+++.|++.++|+||||+| +|+||||||||||+++|+| .|..|+|. +.|. .... .
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~---~~g~----~~~~---~ 71 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK---IFGK----PVRK---R 71 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE---Eccc----cccc---c
Confidence 35789999999999768999999999 9999999999999999955 67889998 7776 2111 1
Q ss_pred cccccEEEEeCCCccc--cccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 149 GRQYPWGVVEGSTVLT--PSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~--~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
..+.++|||+|...+. ..+ ||+|.+.++++... ...+...+.+.++|+.+|+.+
T Consensus 72 ~~~~~IgYVPQ~~~~d~~fP~------tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-------------- 131 (254)
T COG1121 72 RKRLRIGYVPQKSSVDRSFPI------TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-------------- 131 (254)
T ss_pred ccCCeEEEcCcccccCCCCCc------CHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh--------------
Confidence 1235799999965432 334 99999999865532 123344778899999999876
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.++.+..+||||+|
T Consensus 132 -----------------------------------------------------------------~~~r~i~~LSGGQ~Q 146 (254)
T COG1121 132 -----------------------------------------------------------------LRDRQIGELSGGQKQ 146 (254)
T ss_pred -----------------------------------------------------------------hhCCcccccCcHHHH
Confidence 334556679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
|+-||++++. +++|+++|||..|-+..... .|.+.|.+..+.++++++++|++....
T Consensus 147 RV~lARAL~~------~p~lllLDEP~~gvD~~~~~-----------~i~~lL~~l~~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQ------NPDLLLLDEPFTGVDVAGQK-----------EIYDLLKELRQEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhcc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCcHHhH
Confidence 9999999999 99999999998886666554 778888888877999999999988654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-27 Score=218.79 Aligned_cols=199 Identities=18% Similarity=0.164 Sum_probs=147.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcC-----CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLS-----DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~-----~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.+++|++.||.+.+|++||+.| |+|||||||||||||+| +.. ...|+|. +.|+++...
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~---~~g~ni~~~-- 79 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVL---LDGKNIYDP-- 79 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEE---ECCeeccCC--
Confidence 35689999999999999999999999 99999999999999999 322 2358888 888844321
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....-..++++|+|||.++-|| + +++|||+|+....+...++..+.++..|...+|.+--|
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~------SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK------------ 140 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-M------SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK------------ 140 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-c------hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH------------
Confidence 1223356678999999999999 8 99999999943344444666677777777776654111
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+ -.+.....+||||+||
T Consensus 141 -----------------------------------D----------------------------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 141 -----------------------------------D----------------------------RLHKSALGLSGGQQQR 157 (253)
T ss_pred -----------------------------------H----------------------------HhhCCccCCChhHHHH
Confidence 1 0122345689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++||++++. +|+++++||| ...|.+... ++++.+.+. +..-|++|++|.+.- ..|++..
T Consensus 158 LcIARalAv------~PeVlLmDEPtSALDPIsT~------------kIEeLi~eL-k~~yTIviVTHnmqQ-AaRvSD~ 217 (253)
T COG1117 158 LCIARALAV------KPEVLLMDEPTSALDPISTL------------KIEELITEL-KKKYTIVIVTHNMQQ-AARVSDY 217 (253)
T ss_pred HHHHHHHhc------CCcEEEecCcccccCchhHH------------HHHHHHHHH-HhccEEEEEeCCHHH-HHHHhHh
Confidence 999999988 9999999999 556666555 455555444 367788999998763 3344443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=200.74 Aligned_cols=193 Identities=20% Similarity=0.234 Sum_probs=150.5
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.|.++++++..+. -.||++|++.| ||||||||||||||-+| +..+++|+|+ +.|+.+...-....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~---l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR---LLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE---EcCcchhhcCHHHH
Confidence 5677777777754 35999999999 99999999999999999 5568899999 88986543323334
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...+.+++|||||.+.|.|++ |..||+.++....+.+.......+..+|+.+||.+
T Consensus 83 A~~R~~~vGfVFQSF~Lip~l------tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~------------------ 138 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNL------TALENVALPLELRGESSADSRAGAKALLEAVGLGK------------------ 138 (228)
T ss_pred HHhhccceeEEEEeeeccccc------hhhhhccchhhhcCCccccHHHHHHHHHHHhCccc------------------
Confidence 455678899999999999999 99999999854444344455666777888888864
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
-...+|.++|+|++|+|+|
T Consensus 139 -------------------------------------------------------------Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 139 -------------------------------------------------------------RLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred -------------------------------------------------------------ccccCccccCchHHHHHHH
Confidence 1123567899999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhh
Q psy91 307 EKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEER 377 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~ 377 (541)
+++..- .|.+++.||| |..|..... ++...|.+.++. +.|.++++|+..+..+
T Consensus 158 ARAfa~------~P~vLfADEPTGNLD~~Tg~------------~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 158 ARAFAG------RPDVLFADEPTGNLDRATGD------------KIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred HHHhcC------CCCEEeccCCCCCcchhHHH------------HHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 999988 9999999999 666654443 666777777664 6778889999877654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=231.87 Aligned_cols=198 Identities=17% Similarity=0.232 Sum_probs=153.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ .
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~---~~g~~i----~~~~--~ 75 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF---IDGEDV----THRS--I 75 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--H
Confidence 4689999999999888999999999 9999999999999999955 57789999 888733 2222 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||||++.+||++ ||.||+.|+....+..+.+..+++.++++.+|+.++
T Consensus 76 ~~r~ig~vfQ~~~lfp~~------tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-------------------- 129 (351)
T PRK11432 76 QQRDICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-------------------- 129 (351)
T ss_pred HHCCEEEEeCCcccCCCC------CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh--------------------
Confidence 346799999999999999 999999998322233455566678888888887541
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.++.+..+|+|++|+++|+++
T Consensus 130 -----------------------------------------------------------~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 130 -----------------------------------------------------------EDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred -----------------------------------------------------------hcCChhhCCHHHHHHHHHHHH
Confidence 233456789999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++++|||..+.+.... +++.+.|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 151 L~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tii~vTHd~~e~-~~laD~i~vm~ 211 (351)
T PRK11432 151 LIL------KPKVLLFDEPLSNLDANLR-----------RSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVIVMN 211 (351)
T ss_pred HHc------CCCEEEEcCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 999 9999999999777554433 2666667666543 78999999987643 34566666654
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-25 Score=204.56 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=152.0
Q ss_pred eeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+++++.+|.+++ +|+++|++| +++||||||||||||+++| .|..|+|. ++|. .+.+.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~---l~~r----~i~gP---- 72 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ---LNGR----RIEGP---- 72 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEE---ECCE----eccCC----
Confidence 45678888998877 999999999 9999999999999999954 67778888 7777 33332
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
....|+|||++.|+|++ |+.+|++|+....++.+.+..+.+...+.++||.+
T Consensus 73 -gaergvVFQ~~~LlPWl------~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~--------------------- 124 (259)
T COG4525 73 -GAERGVVFQNEALLPWL------NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG--------------------- 124 (259)
T ss_pred -CccceeEeccCccchhh------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc---------------------
Confidence 23459999999999999 99999999955567888888899999999999976
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++++..+|||++|++.|+++
T Consensus 125 ----------------------------------------------------------~~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 125 ----------------------------------------------------------AEHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred ----------------------------------------------------------ccccceEeecchHHHHHHHHHH
Confidence 2244567799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.. +|.++++||| |..|+... +++.+.|-+..+ .++.+.+.+|+++- .--+..++.+.
T Consensus 147 La~------eP~~LlLDEPfgAlDa~tR------------e~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvl 206 (259)
T COG4525 147 LAV------EPQLLLLDEPFGALDALTR------------EQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVL 206 (259)
T ss_pred hhc------CcceEeecCchhhHHHHHH------------HHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEe
Confidence 988 9999999999 77665443 367677666654 47788888887652 23455566555
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-25 Score=231.74 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=151.8
Q ss_pred ceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++|+++.| +++.+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|..+ ...+ .
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~---~~g~~i----~~~~--~ 73 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW---IGGRVV----NELE--P 73 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--H
Confidence 47899999999 7788999999999 9999999999999999955 57789999 888833 2211 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||||++.++|++ ||.||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 74 ~~r~ig~v~Q~~~lfp~~------tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------------------- 126 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHM------SVRENMAYGLKIRGMPKAEIEERVAEAARILELEP--------------------- 126 (356)
T ss_pred HHCCEEEEeCCccccCCC------CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh---------------------
Confidence 235799999999999999 99999998832223344455567778888888754
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|+++|+++
T Consensus 127 ----------------------------------------------------------~~~~~~~~LSgGq~QRvalARA 148 (356)
T PRK11650 127 ----------------------------------------------------------LLDRKPRELSGGQRQRVAMGRA 148 (356)
T ss_pred ----------------------------------------------------------HhhCChhhCCHHHHHHHHHHHH
Confidence 1233456799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++++|||..+.+.... +.+.++|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 149 L~~------~P~llLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~vl~ 209 (356)
T PRK11650 149 IVR------EPAVFLFDEPLSNLDAKLR-----------VQMRLEIQRLHRRLKTTSLYVTHDQVEA-MTLADRVVVMN 209 (356)
T ss_pred Hhc------CCCEEEEeCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEe
Confidence 999 9999999999777554443 2666667666554 78999999987633 34566666663
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-25 Score=231.17 Aligned_cols=197 Identities=19% Similarity=0.254 Sum_probs=153.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++|+++.+|+++||++ +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~---i~g~~~----~~~~--~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY---QGGRDI----TRLP--PQ 74 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--HH
Confidence 589999999999988999999999 9999999999999999955 57789999 888833 2211 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..+||++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 75 ~r~ig~v~Q~~~lfp~~------tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~---------------------- 126 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG---------------------- 126 (353)
T ss_pred HCCEEEEeCCcccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc----------------------
Confidence 45799999999999999 99999999832223344555667788888887754
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 127 ---------------------------------------------------------~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 127 ---------------------------------------------------------SERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred ---------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHH
Confidence 22345567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++++|||..+-+.... .++.+.|.+..+. +.++++.+|+.+. ...+..++.++.
T Consensus 150 ~~------~P~llLLDEP~s~LD~~~r-----------~~l~~~L~~l~~~~~~tvi~vTHd~~e-a~~l~d~i~vl~ 209 (353)
T TIGR03265 150 AT------SPGLLLLDEPLSALDARVR-----------EHLRTEIRQLQRRLGVTTIMVTHDQEE-ALSMADRIVVMN 209 (353)
T ss_pred hc------CCCEEEEcCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEE
Confidence 99 9999999999776554433 2677777766554 7899999999873 345666766664
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-25 Score=231.42 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=154.1
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.+.+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|+.+ ...+
T Consensus 10 ~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~---~~g~~i----~~~~ 82 (375)
T PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM---LDGQDI----THVP 82 (375)
T ss_pred cCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCC
Confidence 3456799999999999889999999999 9999999999999999955 56789999 888833 2222
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..++.+|||||++.+||++ ||.||+.|+....+.+..+..+++.++++.+|+.++
T Consensus 83 --~~~r~ig~vfQ~~~lfp~l------tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------------- 137 (375)
T PRK09452 83 --AENRHVNTVFQSYALFPHM------TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF----------------- 137 (375)
T ss_pred --HHHCCEEEEecCcccCCCC------CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------------
Confidence 2245799999999999999 999999997322233444455567777887777541
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.++.+..+|+|++|+++|
T Consensus 138 --------------------------------------------------------------~~~~p~~LSgGq~QRVaL 155 (375)
T PRK09452 138 --------------------------------------------------------------AQRKPHQLSGGQQQRVAI 155 (375)
T ss_pred --------------------------------------------------------------hhCChhhCCHHHHHHHHH
Confidence 233456789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +|+++++|||..+.+.... +.+.++|.+..+. +.++++.+|+.+.. ..+..++.+
T Consensus 156 ARaL~~------~P~llLLDEP~s~LD~~~r-----------~~l~~~L~~l~~~~g~tiI~vTHd~~ea-~~laDri~v 217 (375)
T PRK09452 156 ARAVVN------KPKVLLLDESLSALDYKLR-----------KQMQNELKALQRKLGITFVFVTHDQEEA-LTMSDRIVV 217 (375)
T ss_pred HHHHhc------CCCEEEEeCCCCcCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 999999 9999999999777554433 2667777766553 78899999987643 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 218 l~ 219 (375)
T PRK09452 218 MR 219 (375)
T ss_pred EE
Confidence 53
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-25 Score=230.73 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=154.2
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCC--CCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLY--GDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~--G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+++|+++|+++.+|+++||+| +|+|||||||||||++|+| .+++ |+|. ++|..+ ...+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~---~~g~~~----~~~~- 75 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA---IADRDL----THAP- 75 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE---ECCEEC----CCCC-
Confidence 4689999999999888999999999 9999999999999999955 5678 9999 888733 2211
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||||+..++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 76 -~~~r~ig~vfQ~~~l~p~~------tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~------------------- 129 (362)
T TIGR03258 76 -PHKRGLALLFQNYALFPHL------KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD------------------- 129 (362)
T ss_pred -HHHCCEEEEECCcccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-------------------
Confidence 2345799999999999999 99999998732223344555667788888888764
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++|+
T Consensus 130 ------------------------------------------------------------~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 130 ------------------------------------------------------------AAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 12334567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc--CcceeeccccchhhhhcccceeEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
++++. +|+++++|||..|.+..... ++.++|.+..+. +.++++.+|+.+.. ..+..++.+
T Consensus 150 RAL~~------~P~llLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~v 211 (362)
T TIGR03258 150 RAIAI------EPDVLLLDEPLSALDANIRA-----------NMREEIAALHEELPELTILCVTHDQDDA-LTLADKAGI 211 (362)
T ss_pred HHHhc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 99999 99999999997775544332 677777776654 67899999997743 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 212 l~ 213 (362)
T TIGR03258 212 MK 213 (362)
T ss_pred EE
Confidence 53
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-25 Score=217.46 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=151.1
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVL 163 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l 163 (541)
..-++++||+| +|||-||||||||+|+| +..|+.|+|+ ++|.++...........+++.+++|||.+.|
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il---v~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL---VDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE---ECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 34688999998 99999999999999999 7889999999 8888554322222223456789999999999
Q ss_pred ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCe
Q psy91 164 TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDI 243 (541)
Q Consensus 164 ~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~v 243 (541)
+||. ||.+|+.|+.-..+.++.+..+++.++|+.+||.+
T Consensus 118 lPhr------tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~----------------------------------- 156 (386)
T COG4175 118 LPHR------TVLENVAFGLEVQGVPKAEREERALEALELVGLEG----------------------------------- 156 (386)
T ss_pred ccch------hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-----------------------------------
Confidence 9999 99999999966678899999999999999999986
Q ss_pred eEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEE
Q psy91 244 GFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLT 323 (541)
Q Consensus 244 G~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~ 323 (541)
+.++++..+|||++|||.++++++. ++.++
T Consensus 157 --------------------------------------------~~~~yp~eLSGGMqQRVGLARAla~------~~~Il 186 (386)
T COG4175 157 --------------------------------------------YADKYPNELSGGMQQRVGLARALAN------DPDIL 186 (386)
T ss_pred --------------------------------------------hhhcCcccccchHHHHHHHHHHHcc------CCCEE
Confidence 3455677899999999999999999 99999
Q ss_pred EEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhh-cccCcceeeccccchhhhhcccceeEEE
Q psy91 324 VVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDE-NRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 324 I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e-~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.||| ...| ..|..++..-|-+. .+.++|+++.+|++| +..++..|+-+.
T Consensus 187 LMDEaFSALD------------PLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaim 238 (386)
T COG4175 187 LMDEAFSALD------------PLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIM 238 (386)
T ss_pred EecCchhhcC------------hHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEe
Confidence 99999 4443 44444554444444 456899999999988 455677776654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-25 Score=210.21 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=150.6
Q ss_pred ceeeecccccccccc----eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 79 YIGFATLPEQVHRKS----VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~----iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.++||++.|+.+. +|++|||+| +|+|+||||||||.++| +..++.|+|. ++|+.+ ....+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~---~~G~~~---~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL---LDGKPL---APKKR 76 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE---ECCccc---Ccccc
Confidence 578999999999887 999999999 99999999999999999 5578899999 888722 22222
Q ss_pred cccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.+.+.+.+.+||||+ .|.|.. ||.+.+.-+....+..+. .+++.++++.||+..
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~------tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~---------------- 132 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRR------TVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP---------------- 132 (252)
T ss_pred chhhccceeEEecCCccccCcch------hHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH----------------
Confidence 335677899999996 577877 888877665333333332 233777888888753
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
-+.++.+..+||||.||+
T Consensus 133 --------------------------------------------------------------~~l~R~P~eLSGGQ~QRi 150 (252)
T COG1124 133 --------------------------------------------------------------SFLDRRPHELSGGQRQRI 150 (252)
T ss_pred --------------------------------------------------------------HHHhcCchhcChhHHHHH
Confidence 134567788999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rv 383 (541)
+|++++.. +|+++|+|||....+. .+..++.++|.+..+. +-+.++.+|++..... ++.|+
T Consensus 151 aIARAL~~------~PklLIlDEptSaLD~-----------siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~-~cdRi 212 (252)
T COG1124 151 AIARALIP------EPKLLILDEPTSALDV-----------SVQAQILNLLLELKKERGLTYLFISHDLALVEH-MCDRI 212 (252)
T ss_pred HHHHHhcc------CCCEEEecCchhhhcH-----------HHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHH-Hhhhe
Confidence 99999988 9999999999665333 3334788888887654 5688899999886653 55565
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.|.
T Consensus 213 ~Vm 215 (252)
T COG1124 213 AVM 215 (252)
T ss_pred eee
Confidence 554
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-25 Score=228.82 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=152.9
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|+++||++.|++ ..+|+||||+| +|+|||||||||||++| +..+++|+|+ ++|..+. .......
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~---i~G~~i~-~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI---VDGQDLT-TLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEECC-cCCHHHH
Confidence 789999999952 46999999999 99999999999999999 4467889999 8887332 1111112
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++.+|||||+..+++.+ ||.+|+.++....+.++.+..+++.++++.+|+.+.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~------------------ 133 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSR------TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK------------------ 133 (343)
T ss_pred HHHhcCEEEEECCccccccC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh------------------
Confidence 23356799999999999999 999999887322233445556677888888887641
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.++++..+|+|++|++.|+
T Consensus 134 -------------------------------------------------------------~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 134 -------------------------------------------------------------HDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred -------------------------------------------------------------hhCChhhCCHHHHHHHHHH
Confidence 1234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++++|||..+.+..... .+.++|.+..+. +.++++.+|+++... .++.++.++
T Consensus 153 RAL~~------~P~iLLlDEPts~LD~~t~~-----------~i~~lL~~l~~~~g~tiiliTH~~~~v~-~~~d~v~vl 214 (343)
T TIGR02314 153 RALAS------NPKVLLCDEATSALDPATTQ-----------SILELLKEINRRLGLTILLITHEMDVVK-RICDCVAVI 214 (343)
T ss_pred HHHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99999 99999999998876655553 677777777654 789999999987543 356666665
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 215 ~ 215 (343)
T TIGR02314 215 S 215 (343)
T ss_pred E
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=210.62 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=161.1
Q ss_pred Cceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++++++.|++. .+|+++|++| +|+||||||||||+++| +..+.+|.|. ++|..+.. .....
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~---~~g~~~~~---~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL---VDGLDTSS---EKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE---ECCeeccc---hhhHH
Confidence 357899999999876 8999999999 99999999999999999 5578889998 88873221 12344
Q ss_pred cccccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||||++.. +..- ||.+.++|+....+.+.++..+++..+++.+|+.+
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~------tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~------------------- 130 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGP------TVEDEVAFGLENLGLPREEIEERVAEALELVGLEE------------------- 130 (235)
T ss_pred HhhcceEEEEECcccccccC------cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-------------------
Confidence 566789999998632 2333 89999999966667777788899999999999875
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++||
T Consensus 131 ------------------------------------------------------------~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 131 ------------------------------------------------------------LLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred ------------------------------------------------------------hccCCccccCCcceeeHHhh
Confidence 23456778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..++. +|+++|+|||+.|.+..... .+.+.+.+..+. +.|+++.+|+++.... +..++.++
T Consensus 151 ~vLa~------~P~iliLDEPta~LD~~~~~-----------~l~~~l~~L~~~~~~tii~~tHd~~~~~~-~ad~v~vl 212 (235)
T COG1122 151 GVLAM------GPEILLLDEPTAGLDPKGRR-----------ELLELLKKLKEEGGKTIIIVTHDLELVLE-YADRVVVL 212 (235)
T ss_pred HHHHc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhcCCCeEEEEeCcHHHHHh-hCCEEEEE
Confidence 99999 99999999999987766553 677778888776 6899999999886543 55666665
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 213 ~ 213 (235)
T COG1122 213 D 213 (235)
T ss_pred E
Confidence 4
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-25 Score=223.43 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=155.9
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++||++.|+ .+.+|+||||+| |++|||||||||||++|+ ..+++|+|. +.|. ..... ...
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~---i~G~----~~~~~-~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL---VLGY----DVVKE-PAK 75 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---EcCE----eCccC-HHH
Confidence 567899999999 699999999999 999999999999999994 467889999 8887 22221 223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||+|++.+++.+ ||+|++.|.....+.......++++++++.+||.+.
T Consensus 76 ~~~~igy~~~~~~~~~~l------T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-------------------- 129 (293)
T COG1131 76 VRRRIGYVPQEPSLYPEL------TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-------------------- 129 (293)
T ss_pred HHhheEEEccCCCCCccc------cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh--------------------
Confidence 456799999999999999 999999986322222224456678888888888641
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+..+..+|+|++|++.|+.+
T Consensus 130 -----------------------------------------------------------~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 130 -----------------------------------------------------------ANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred -----------------------------------------------------------hCcchhhcCHHHHHHHHHHHH
Confidence 122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC-cceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG-KTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~-rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+|+|+|||+.|.+.... ..|.+.|.+..+.+ +++++.+|.++-.+. ++.+|.++.
T Consensus 151 L~~------~P~lliLDEPt~GLDp~~~-----------~~~~~~l~~l~~~g~~tvlissH~l~e~~~-~~d~v~il~ 211 (293)
T COG1131 151 LLH------DPELLILDEPTSGLDPESR-----------REIWELLRELAKEGGVTILLSTHILEEAEE-LCDRVIILN 211 (293)
T ss_pred Hhc------CCCEEEECCCCcCCCHHHH-----------HHHHHHHHHHHhCCCcEEEEeCCcHHHHHH-hCCEEEEEe
Confidence 998 9999999999998665444 37888899888877 799999999875543 466777764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-25 Score=228.15 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=152.1
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+.++++++.|++..+|+++||+| +|+|||||||||||++|+| .++.|+|+ ++|+.+ ...+
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~---i~g~~i----~~~~- 87 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM---LDGVDL----SHVP- 87 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCC-
Confidence 345699999999999888999999999 9999999999999999954 56789999 888732 2211
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||||++.+||++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 88 -~~~r~ig~vfQ~~~lfp~l------tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~------------------- 141 (377)
T PRK11607 88 -PYQRPINMMFQSYALFPHM------TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE------------------- 141 (377)
T ss_pred -HHHCCEEEEeCCCccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 2345799999999999999 99999998732223344555566777777777753
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++|+
T Consensus 142 ------------------------------------------------------------~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 142 ------------------------------------------------------------FAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred ------------------------------------------------------------hhcCChhhCCHHHHHHHHHH
Confidence 22345567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++++|||..+.+..... ++.+.|.+..+ .+.++++.+|+.+. ...+..++.++
T Consensus 162 RAL~~------~P~lLLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~g~tii~vTHd~~e-a~~laDri~vl 223 (377)
T PRK11607 162 RSLAK------RPKLLLLDEPMGALDKKLRD-----------RMQLEVVDILERVGVTCVMVTHDQEE-AMTMAGRIAIM 223 (377)
T ss_pred HHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEE
Confidence 99999 99999999997765544332 45555554433 47889999998763 24566777666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 224 ~ 224 (377)
T PRK11607 224 N 224 (377)
T ss_pred e
Confidence 4
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-25 Score=199.75 Aligned_cols=203 Identities=17% Similarity=0.213 Sum_probs=158.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc--c---
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA--G--- 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~--~--- 144 (541)
+.+.++|+.++||...+|++||++. +|||.|||||||+|||| +..|..|.|. ++|+.+....+ +
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~---v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR---VNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEE---ECCeEEEeeeCCCCCee
Confidence 4678999999999999999999987 99999999999999999 8889999999 78875432211 1
Q ss_pred ----cccccccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 145 ----TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 145 ----~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
......+.+.|+|||+++|+.++ ||.||+.-+... .+.++.+..+++...|..+|+..
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHm------tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e----------- 144 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHM------TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE----------- 144 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHH------HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-----------
Confidence 11222345679999999999999 999999866222 24577888888888899888864
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
..+.++..+|||
T Consensus 145 --------------------------------------------------------------------k~~~YP~~LSGG 156 (256)
T COG4598 145 --------------------------------------------------------------------KADAYPAHLSGG 156 (256)
T ss_pred --------------------------------------------------------------------hhhcCccccCch
Confidence 123456779999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l 379 (541)
++|+++|++++.. .|.+++.|||+...+ ..+-......+.+....+||..+.+|.+.+.. .+
T Consensus 157 QQQR~aIARaLam------eP~vmLFDEPTSALD-----------PElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR-~V 218 (256)
T COG4598 157 QQQRVAIARALAM------EPEVMLFDEPTSALD-----------PELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR-DV 218 (256)
T ss_pred HHHHHHHHHHHhc------CCceEeecCCcccCC-----------HHHHHHHHHHHHHHHHhCCeEEEEeeehhHHH-hh
Confidence 9999999999988 999999999965422 22333556667777788999999999987653 35
Q ss_pred cceeEEE
Q psy91 380 KLRLTVV 386 (541)
Q Consensus 380 ~~rvnvI 386 (541)
+..|.++
T Consensus 219 ss~v~fL 225 (256)
T COG4598 219 SSHVIFL 225 (256)
T ss_pred hhheEEe
Confidence 5555554
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-25 Score=208.49 Aligned_cols=205 Identities=19% Similarity=0.255 Sum_probs=159.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc-
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR- 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~- 148 (541)
+.+.+++|+++||+-.+++||||+| +||||||||||||+|+| ...|+.|.|. +.|+ ++.+.+..
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~---~~G~----~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI---FRGR----DITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEE---ECCc----ccCCCCHHH
Confidence 3567899999999999999999999 99999999999999999 5678999999 9999 44443322
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc------------chhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE------------QVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~------------~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
..+..++..||...+|+.+ ||.||+..+.... .....+..+++..+|+.+||.+.
T Consensus 76 iar~Gi~RTFQ~~rlF~~l------TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~------- 142 (250)
T COG0411 76 IARLGIARTFQITRLFPGL------TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL------- 142 (250)
T ss_pred HHhccceeecccccccCCC------cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-------
Confidence 2345688899999999999 9999998872211 01234555667777777777652
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
.+....++
T Consensus 143 ------------------------------------------------------------------------a~~~A~~L 150 (250)
T COG0411 143 ------------------------------------------------------------------------ADRPAGNL 150 (250)
T ss_pred ------------------------------------------------------------------------hcchhhcC
Confidence 23334457
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
|.|++++++|+++++. +|+|+++|||..|-+..... .+.+++.+..+ .+.++.+.-|++++.
T Consensus 151 syG~qR~LEIArALa~------~P~lLLLDEPaAGln~~e~~-----------~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 151 SYGQQRRLEIARALAT------QPKLLLLDEPAAGLNPEETE-----------ELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred ChhHhHHHHHHHHHhc------CCCEEEecCccCCCCHHHHH-----------HHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 8899999999999999 99999999999997655443 55666666665 458889999999976
Q ss_pred hhcccceeEEEc---CCCCC
Q psy91 376 ERGVKLRLTVVD---TPGFG 392 (541)
Q Consensus 376 ~~~l~~rvnvIp---vi~k~ 392 (541)
++++.+++|.. +|+-|
T Consensus 214 -m~l~dri~Vl~~G~~IAeG 232 (250)
T COG0411 214 -MGLADRIVVLNYGEVIAEG 232 (250)
T ss_pred -hhhccEEEeccCCcCcccC
Confidence 45899999875 45444
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-24 Score=221.86 Aligned_cols=201 Identities=19% Similarity=0.206 Sum_probs=152.1
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.|.++||+++|+++.+|++|||+| ||+||||||||||+++|+| .+++|+|+ +.|..+ ....
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~---i~G~~~----~~~~- 75 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS---LCGEPV----PSRA- 75 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEec----ccch-
Confidence 345799999999999989999999999 9999999999999999955 57889999 888732 2211
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|+..+++.+ |+.||+.+.....+....+...++..+++.+|+.+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 130 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDF------TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN------------------- 130 (306)
T ss_pred HHHHhcEEEEeccCcCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 12346799999999999999 99999986421122233334445666666666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 131 ------------------------------------------------------------~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 131 ------------------------------------------------------------KADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred ------------------------------------------------------------HhcCchhhCCHHHHHHHHHH
Confidence 11223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||..|.+..... .+.+++.+..+.+.++++.+|.++..+ .++.++.++.
T Consensus 151 ~aL~~------~P~lllLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~till~sH~l~e~~-~~~d~i~il~ 212 (306)
T PRK13537 151 RALVN------DPDVLVLDEPTTGLDPQARH-----------LMWERLRSLLARGKTILLTTHFMEEAE-RLCDRLCVIE 212 (306)
T ss_pred HHHhC------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCCEEEEEE
Confidence 99999 99999999998887766553 677777777666889999999987443 3566666664
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-24 Score=193.26 Aligned_cols=194 Identities=17% Similarity=0.167 Sum_probs=151.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccc--eecccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNT--VIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~--~~~~~~~~~~ 148 (541)
.|+++++.+.||...+|.||+++. .++||||+|||||||.| +..+.+|+.. +.|... .........+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~---ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN---IAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEE---ecccccccccCccHHHHH
Confidence 478999999999999999999988 89999999999999999 7788899888 444411 0111112334
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|+|||++.|+|++ ||.||+.-+. ...++++.+...++.++|..+.+.
T Consensus 79 ~lr~~vgmvfqqy~lwphl------tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-------------------- 132 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHL------TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-------------------- 132 (242)
T ss_pred HHHHhhhhhhhhhccCchh------HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--------------------
Confidence 5677899999999999999 9999987651 122445555555555555544443
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ +.++.+-.+|||++|+++|+
T Consensus 133 ----------------------------------------------------------~-~adr~plhlsggqqqrvaia 153 (242)
T COG4161 133 ----------------------------------------------------------P-YADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred ----------------------------------------------------------c-ccccCceecccchhhhHHHH
Confidence 3 45666777999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
++++. +|.+++.|||+.. ++..|..|+...+++...-+.|-.|.+|..++..+
T Consensus 154 ralmm------kpqvllfdeptaa-----------ldpeitaqvv~iikel~~tgitqvivthev~va~k 206 (242)
T COG4161 154 RALMM------EPQVLLFDEPTAA-----------LDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred HHHhc------CCcEEeecCcccc-----------cCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHh
Confidence 99998 9999999999764 34556778999999999999999999999887654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-24 Score=195.87 Aligned_cols=196 Identities=15% Similarity=0.199 Sum_probs=147.9
Q ss_pred eeeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
|.+++|.+.|+..+.--++++.- ||+||||||||||||+| ...|.+|+|+ ++|+ +....+ ...+.
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~---i~g~----d~t~~~--P~~RP 72 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL---INGV----DHTASP--PAERP 72 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEE---EcCe----ecCcCC--cccCC
Confidence 45678888888766544444322 99999999999999999 4578889999 8888 333322 33457
Q ss_pred EEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCC
Q psy91 154 WGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 233 (541)
Q Consensus 154 ~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~ 233 (541)
++++||+.+||.|+ ||.+|+.+|.-|.-.-..+.+++++.++..+|+.++
T Consensus 73 VSmlFQEnNLFaHL------tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~------------------------ 122 (231)
T COG3840 73 VSMLFQENNLFAHL------TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGF------------------------ 122 (231)
T ss_pred hhhhhhccccchhh------hhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhH------------------------
Confidence 99999999999999 999999999666433455667788899999999762
Q ss_pred CCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEe
Q psy91 234 EKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI 313 (541)
Q Consensus 234 ~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i 313 (541)
.++.+..+|||++||++++++++.
T Consensus 123 -------------------------------------------------------~~RLP~~LSGGqRQRvALARclvR- 146 (231)
T COG3840 123 -------------------------------------------------------LKRLPGELSGGQRQRVALARCLVR- 146 (231)
T ss_pred -------------------------------------------------------hhhCccccCchHHHHHHHHHHHhc-
Confidence 234566799999999999999998
Q ss_pred eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 314 EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 314 ~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.-.++++|||..- +..-+...+...+.+... .+.|+.+++|..+ +..++..++-+++
T Consensus 147 -----~~PilLLDEPFsA-----------LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~ 204 (231)
T COG3840 147 -----EQPILLLDEPFSA-----------LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD 204 (231)
T ss_pred -----cCCeEEecCchhh-----------cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe
Confidence 8899999999432 223344466666666654 3678888998866 4456777777775
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=223.92 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=150.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++++++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|+.+ .... ..
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~---i~g~~i----~~~~--~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR---FHGTDV----SRLH--AR 72 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCC--HH
Confidence 378999999999889999999999 9999999999999999955 57789999 888733 2211 23
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccc----cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP----EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~----~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++||+|+..++|++ ||.||+.|+... ......+..+++.++++.+|+.+
T Consensus 73 ~r~i~~v~Q~~~l~p~~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------------------ 128 (353)
T PRK10851 73 DRKVGFVFQHYALFRHM------TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH------------------ 128 (353)
T ss_pred HCCEEEEecCcccCCCC------cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 35799999999999999 999999987321 11233444556777777777643
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++++..+|+|++|+++|
T Consensus 129 -------------------------------------------------------------~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 129 -------------------------------------------------------------LADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred -------------------------------------------------------------hhhCChhhCCHHHHHHHHH
Confidence 2233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++++|||..|.+..... .+.+.|.+..+. +.++++.+|+.+.. ..+..++.+
T Consensus 148 ArAL~~------~P~llLLDEP~s~LD~~~r~-----------~l~~~L~~l~~~~g~tii~vTHd~~ea-~~~~Dri~v 209 (353)
T PRK10851 148 ARALAV------EPQILLLDEPFGALDAQVRK-----------ELRRWLRQLHEELKFTSVFVTHDQEEA-MEVADRVVV 209 (353)
T ss_pred HHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 999999 99999999997776554432 667777776654 78899999987643 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 210 l~ 211 (353)
T PRK10851 210 MS 211 (353)
T ss_pred EE
Confidence 54
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-24 Score=224.51 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=148.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~---~~g~~i----~~~~--~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF---IGEKRM----NDVP--PA 73 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCC--Hh
Confidence 478999999999889999999999 9999999999999999955 57789999 888732 2111 12
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||+|+..+++++ ||.||+.|+....+....+..+++.++++.+|+.+
T Consensus 74 ~~~i~~v~Q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---------------------- 125 (369)
T PRK11000 74 ERGVGMVFQSYALYPHL------SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH---------------------- 125 (369)
T ss_pred HCCEEEEeCCcccCCCC------CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 35799999999999999 99999998732122233344456667777776643
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|++.|++++
T Consensus 126 ---------------------------------------------------------~~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 126 ---------------------------------------------------------LLDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred ---------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHH
Confidence 12334557899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 149 ~~------~P~lLLLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tvI~vTHd~~~~-~~~~d~i~vl~ 208 (369)
T PRK11000 149 VA------EPSVFLLDEPLSNLDAALRV-----------QMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKIVVLD 208 (369)
T ss_pred hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHhCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 98 99999999998776554442 566666666543 78899999998733 34566666664
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-24 Score=211.26 Aligned_cols=201 Identities=19% Similarity=0.228 Sum_probs=146.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+.......+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~~~-~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL---IDGEDISG-LSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccc-cChhhHHHHh
Confidence 46889999999888999999999 9999999999999999955 46789999 88873211 1100012334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++||+|+..+++.+ |+.+|+.++.... .....+..+++..+++.+|+.+
T Consensus 77 ~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (235)
T cd03261 77 RRMGMLFQSGALFDSL------TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG---------------------- 128 (235)
T ss_pred cceEEEccCcccCCCC------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 5799999999999989 9999998762111 1223333445566666666543
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 129 ---------------------------------------------------------AEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred ---------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|-+..+.. .+.++|.+..+ .++++++.+|+++.. ..++.++.++.
T Consensus 152 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~vsH~~~~~-~~~~d~v~~l~ 211 (235)
T cd03261 152 AL------DPELLLYDEPTAGLDPIASG-----------VIDDLIRSLKKELGLTSIMVTHDLDTA-FAIADRIAVLY 211 (235)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEecCHHHH-HHhcCEEEEEE
Confidence 98 99999999998887665553 67777777655 378999999998743 33556666653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-24 Score=209.01 Aligned_cols=199 Identities=21% Similarity=0.256 Sum_probs=143.9
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK- 146 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~- 146 (541)
+.++||++.|++ +.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. .+...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~~~-~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR---VDGTDISK-LSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE---ECCEehhh-cchhHH
Confidence 468899999986 68999999999 9999999999999999955 46789999 88873211 01000
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...+++.++|++|+..+++.+ |+.||+.++....+.......+.+..+++.+|+..
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 132 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDL------TALENVELPLLLAGVPKKERRERAEELLERVGLGD------------------ 132 (218)
T ss_pred HHHHhhcEEEEeeccccCCCC------cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 111345799999999999888 99999987632111122223344556666666532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 133 -------------------------------------------------------------RLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred -------------------------------------------------------------hhhcChhhcCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..... .+.+++.+..+ .++++++.+|+.+... +..++.+
T Consensus 152 a~al~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~--~~d~v~~ 212 (218)
T cd03255 152 ARALAN------DPKIILADEPTGNLDSETGK-----------EVMELLRELNKEAGTTIVVVTHDPELAE--YADRIIE 212 (218)
T ss_pred HHHHcc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCeEEEEECCHHHHh--hhcEEEE
Confidence 999999 99999999998886655543 67777777655 4789999999987643 5666655
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 213 l 213 (218)
T cd03255 213 L 213 (218)
T ss_pred e
Confidence 5
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-24 Score=223.93 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=153.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|.. +.....+..
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~---l~G~~----i~~~~~~~~ 75 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL---VAGDD----VEALSARAA 75 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE---ECCEE----cCcCCHHHH
Confidence 588999999999999999999999 9999999999999999955 57789999 88873 222222334
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc--chh--hHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--QVH--RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~~~--~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.+|||+|+..+++.+ ||.||+.+++.+. ... .....+++.++++.+|+.+.
T Consensus 76 ~~~ig~v~q~~~l~~~~------tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~----------------- 132 (402)
T PRK09536 76 SRRVASVPQDTSLSFEF------DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF----------------- 132 (402)
T ss_pred hcceEEEccCCCCCCCC------CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------------
Confidence 56799999999999899 9999999875432 111 23344566777777777541
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.++.+..+|+|++|++.|
T Consensus 133 --------------------------------------------------------------~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 133 --------------------------------------------------------------ADRPVTSLSGGERQRVLL 150 (402)
T ss_pred --------------------------------------------------------------hcCChhhCCHHHHHHHHH
Confidence 123355689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +|+++|+|||..|.+..... .+.++|.+..+.+.++++.+|+++... ++..++.++
T Consensus 151 ArAL~~------~P~iLLLDEPtsgLD~~~~~-----------~l~~lL~~l~~~g~TIIivsHdl~~~~-~~adrii~l 212 (402)
T PRK09536 151 ARALAQ------ATPVLLLDEPTASLDINHQV-----------RTLELVRRLVDDGKTAVAAIHDLDLAA-RYCDELVLL 212 (402)
T ss_pred HHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 999999 99999999998887766553 677777777666789999999987553 355555555
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 213 ~ 213 (402)
T PRK09536 213 A 213 (402)
T ss_pred E
Confidence 3
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-24 Score=219.80 Aligned_cols=199 Identities=20% Similarity=0.213 Sum_probs=150.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+ .... ..
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~---i~G~~~----~~~~-~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT---VLGVPV----PARA-RL 111 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE---ECCEEC----Ccch-HH
Confidence 4699999999999999999999999 9999999999999999955 57889999 888732 2111 23
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+||++|+..+++.+ |+.||+.+.....+....+..+++..+++.+|+..
T Consensus 112 ~~~~ig~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~--------------------- 164 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEF------TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES--------------------- 164 (340)
T ss_pred HhccEEEEeCCccCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch---------------------
Confidence 355799999999999999 99999976311111222233344555566555532
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+..+..+|+|++|++.|+++
T Consensus 165 ----------------------------------------------------------~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 165 ----------------------------------------------------------KADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred ----------------------------------------------------------hhCCChhhCCHHHHHHHHHHHH
Confidence 1233455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++|+|||..|.+..... ++.++|.+..+.++++++.+|+++.. ..++.++.++.
T Consensus 187 L~~------~P~lLiLDEPt~gLD~~~r~-----------~l~~~l~~l~~~g~tilisSH~l~e~-~~~~d~i~il~ 246 (340)
T PRK13536 187 LIN------DPQLLILDEPTTGLDPHARH-----------LIWERLRSLLARGKTILLTTHFMEEA-ERLCDRLCVLE 246 (340)
T ss_pred Hhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEEEEE
Confidence 998 99999999998887765553 77777877766688999999988743 34667777663
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-24 Score=207.46 Aligned_cols=200 Identities=19% Similarity=0.258 Sum_probs=143.3
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++|+++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ........
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR---FNGQDLTR-LRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEehhh-cChhHHHH
Confidence 678999999964 46999999999 9999999999999999955 46789999 88873211 11111112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++.+ |+.||+.++....+.......+++.++++.+|+..
T Consensus 78 ~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------- 130 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDR------TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG--------------------- 130 (216)
T ss_pred HHHhceEEecCccccccc------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh---------------------
Confidence 345799999999999989 99999987621111122233345566666666532
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|++.|+++
T Consensus 131 ----------------------------------------------------------~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 131 ----------------------------------------------------------KAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ----------------------------------------------------------hhhCChhhCCHHHHHHHHHHHH
Confidence 1122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 153 l~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~vsH~~~~~~-~~~d~i~~l 211 (216)
T TIGR00960 153 IVH------KPPLLLADEPTGNLDPELSR-----------DIMRLFEEFNRRGTTVLVATHDINLVE-TYRHRTLTL 211 (216)
T ss_pred Hhc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999 99999999998887655543 566666665555788999999987443 344555554
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-24 Score=199.00 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=158.6
Q ss_pred eeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+++.+++++|+... +++||||++ +|+|||||||||+||+| +..|++|.|+ ++|-++ ...+ ...
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~---idg~d~----~~~p-~~v 73 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT---IDGVDT----VRDP-SFV 73 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE---Eeeccc----ccCh-HHH
Confidence 67889999999876 999999998 99999999999999999 6789999999 777632 2222 244
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|.++.+..++..+ |++||+.|-....++.+.+..++++++.+.+++..+.|
T Consensus 74 rr~IGVl~~e~glY~Rl------T~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~------------------- 128 (245)
T COG4555 74 RRKIGVLFGERGLYARL------TARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD------------------- 128 (245)
T ss_pred hhhcceecCCcChhhhh------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------------------
Confidence 56899999989999999 99999987534456677788888888888887765322
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+....+|.|++|+|.|++++
T Consensus 129 ------------------------------------------------------------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 129 ------------------------------------------------------------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ------------------------------------------------------------HHHhhhchhhHHHHHHHHHH
Confidence 23345688999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +|.++|+|||..|.++.... .|.+++.+....+|.+++++|.+.- ...++.+|.+|
T Consensus 149 vh------~P~i~vlDEP~sGLDi~~~r-----------~~~dfi~q~k~egr~viFSSH~m~E-vealCDrvivl 206 (245)
T COG4555 149 VH------DPSILVLDEPTSGLDIRTRR-----------KFHDFIKQLKNEGRAVIFSSHIMQE-VEALCDRVIVL 206 (245)
T ss_pred hc------CCCeEEEcCCCCCccHHHHH-----------HHHHHHHHhhcCCcEEEEecccHHH-HHHhhheEEEE
Confidence 99 99999999999998876654 6778888888889999999998762 23477777765
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-24 Score=206.75 Aligned_cols=196 Identities=18% Similarity=0.237 Sum_probs=144.3
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|++++|+++.+|+++||++ ||+|||||||||||++|+| .+.+|+|. ++|..+ .... ...+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~-~~~~ 72 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT---VAGHDV----VREP-REVR 72 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEec----CcCh-HHHh
Confidence 46889999999889999999999 9999999999999999965 46789999 888732 1111 2234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++....+....+..+.+..+++.+|+..
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 123 (220)
T cd03265 73 RRIGIVFQDLSVDDEL------TGWENLYIHARLYGVPGAERRERIDELLDFVGLLE----------------------- 123 (220)
T ss_pred hcEEEecCCccccccC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------------------
Confidence 5799999999999889 99999987521111222233345566666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 124 --------------------------------------------------------~~~~~~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 124 --------------------------------------------------------AADRLVKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred --------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 112335568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+... .+..++.++
T Consensus 148 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~~tH~~~~~~-~~~d~i~~l 205 (220)
T cd03265 148 H------RPEVLFLDEPTIGLDPQTRA-----------HVWEYIEKLKEEFGMTILLTTHYMEEAE-QLCDRVAII 205 (220)
T ss_pred c------CCCEEEEcCCccCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998886665543 666777766554 788999999877433 244555554
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=205.14 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=142.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|++++|+++.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .... ..+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~--~~~ 71 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL---IDGRDV----TGVP--PER 71 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEc----CcCc--hhh
Confidence 46789999998888999999999 9999999999999999955 56789999 888732 1111 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++||+|+..+++.+ |+.+|+.++............+.+..+++.+|+..
T Consensus 72 ~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (213)
T cd03259 72 RNIGMVFQDYALFPHL------TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG----------------------- 122 (213)
T ss_pred ccEEEEcCchhhccCC------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 5799999999888888 99999987521111122222334555555555432
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 123 --------------------------------------------------------LLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred --------------------------------------------------------hhhcChhhCCHHHHHHHHHHHHHh
Confidence 112334568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..+.. .+.+++.+..+ .++++++.+|+.+... .+..++.++
T Consensus 147 ~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l 204 (213)
T cd03259 147 R------EPSLLLLDEPLSALDAKLRE-----------ELREELKELQRELGITTIYVTHDQEEAL-ALADRIAVM 204 (213)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEecCHHHHH-HhcCEEEEE
Confidence 8 99999999998887665543 66677776654 4788999999877433 345555555
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-24 Score=218.89 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=148.2
Q ss_pred eeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|.++||+++|+ .+.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~---~~g~~i~~-~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL---VDGQDLTA-LSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEECCc-CCHHHH
Confidence 67899999997 467999999999 9999999999999999955 57789999 88873211 111111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++.+|||+|+..+++.+ ||.+|+.++....+....+..+++..+++.+|+.+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------------- 132 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSR------TVFDNVALPLELAGTPKAEIKARVTELLELVGLSD------------------- 132 (343)
T ss_pred HHHhcCEEEEeCCCccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 12346799999999999999 99999987622122233334455666677666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 133 ------------------------------------------------------------~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 133 ------------------------------------------------------------KADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 11233456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+++... .++.++.++
T Consensus 153 raL~~------~p~iLlLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tiilvtH~~~~i~-~~~d~v~~l 214 (343)
T PRK11153 153 RALAS------NPKVLLCDEATSALDPATTR-----------SILELLKDINRELGLTIVLITHEMDVVK-RICDRVAVI 214 (343)
T ss_pred HHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887655543 667777776554 789999999987543 456666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 215 ~ 215 (343)
T PRK11153 215 D 215 (343)
T ss_pred E
Confidence 3
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-24 Score=219.41 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=143.7
Q ss_pred ccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc-ccccccEEEE
Q psy91 87 EQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV-RGRQYPWGVV 157 (541)
Q Consensus 87 ~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~~~~~g~V 157 (541)
+.|+++.+|+++||+| +|+|||||||||||++| +..++.|+|+ ++|..+.. .+.... ..+++.++||
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~---i~G~~i~~-~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF---IDGENIMK-QSPVELREVRRKKIGMV 76 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE---ECCEECCc-CCHHHHHHHHhCcEEEE
Confidence 3577888999999999 99999999999999999 4467899999 88873321 111111 1125689999
Q ss_pred eCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCC
Q psy91 158 EGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS 237 (541)
Q Consensus 158 ~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~ 237 (541)
+|+..++|++ ||+||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 77 ~Q~~~l~~~~------TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~----------------------------- 121 (363)
T TIGR01186 77 FQQFALFPHM------TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE----------------------------- 121 (363)
T ss_pred ECCCcCCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-----------------------------
Confidence 9999999999 99999998732233444555667778888887753
Q ss_pred CCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 238 IPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 238 ~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 122 --------------------------------------------------~~~~~p~~LSGGq~QRV~lARAL~~----- 146 (363)
T TIGR01186 122 --------------------------------------------------YEHRYPDELSGGMQQRVGLARALAA----- 146 (363)
T ss_pred --------------------------------------------------hhhCChhhCCHHHHHHHHHHHHHhc-----
Confidence 1223455689999999999999999
Q ss_pred eeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 318 v~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++++|+|||..+-+.... ..+.+.+.+..+ .++|+++.+|+++.. .++..++.++.
T Consensus 147 -~p~iLLlDEP~saLD~~~r-----------~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~vl~ 204 (363)
T TIGR01186 147 -EPDILLMDEAFSALDPLIR-----------DSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIVIMK 204 (363)
T ss_pred -CCCEEEEeCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEe
Confidence 9999999999766443333 266666766654 478999999998754 33556666653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-24 Score=204.25 Aligned_cols=195 Identities=17% Similarity=0.290 Sum_probs=143.3
Q ss_pred eeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
|.++++++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ...++
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~-~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR---IDGQDV----LKQP-QKLRR 72 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCCcc----ccch-HHHHh
Confidence 46889999998888999999998 9999999999999999955 57789999 888732 2111 23356
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.++|++|+..+++.+ |+.+|+.+.....+....+..+.+..+++.+|+.+.
T Consensus 73 ~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------- 123 (211)
T cd03264 73 RIGYLPQEFGVYPNF------TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR----------------------- 123 (211)
T ss_pred heEEecCCCcccccC------CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------------------
Confidence 799999999999888 999999875211112222233445556666655321
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
.+..+..+|+|++|++.|+++++.
T Consensus 124 --------------------------------------------------------~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 124 --------------------------------------------------------AKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred --------------------------------------------------------HhCchhhCCHHHHHHHHHHHHHhc
Confidence 122345689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..+.. ++.++|.+..+ +.++++.+|+.+... .+..++.++
T Consensus 148 ------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~vsH~~~~~~-~~~d~i~~l 202 (211)
T cd03264 148 ------DPSILIVDEPTAGLDPEERI-----------RFRNLLSELGE-DRIVILSTHIVEDVE-SLCNQVAVL 202 (211)
T ss_pred ------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhC-CCEEEEEcCCHHHHH-HhCCEEEEE
Confidence 99999999998887766553 66777776655 478889999887543 344555555
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=214.44 Aligned_cols=197 Identities=20% Similarity=0.218 Sum_probs=145.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||++.|+++.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ .... ...
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~-~~~ 75 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT---VLGEPV----PSRA-RLA 75 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----cccH-HHH
Confidence 589999999999889999999999 9999999999999999955 57789999 888732 1111 223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+||++|+..+++.+ |+.+|+.+.....+....+..+++..+++.+|+.+
T Consensus 76 ~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---------------------- 127 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEF------TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES---------------------- 127 (303)
T ss_pred hhcEEEEeccccCCcCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh----------------------
Confidence 45799999999999889 99999875311111222223334455555555532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 128 ---------------------------------------------------------~~~~~~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 128 ---------------------------------------------------------KADVRVALLSGGMKRRLTLARAL 150 (303)
T ss_pred ---------------------------------------------------------HhcCchhhCCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..... .+.+.|.+..+.+.++++.+|+++... .++.++.++
T Consensus 151 ~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~~~~~g~til~~sH~~~~~~-~~~d~i~~l 208 (303)
T TIGR01288 151 IN------DPQLLILDEPTTGLDPHARH-----------LIWERLRSLLARGKTILLTTHFMEEAE-RLCDRLCVL 208 (303)
T ss_pred hc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 666677766556889999999987443 355666555
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=205.34 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=141.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
+.++||++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL---LDGQDI----TKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEec----ccCCHhHHH
Confidence 46889999999889999999999 9999999999999999955 56789999 888732 11111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.+...............+..+++.+|+..
T Consensus 74 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 125 (232)
T cd03218 74 RLGIGYLPQEASIFRKL------TVEENILAVLEIRGLSKKEREEKLEELLEEFHITH---------------------- 125 (232)
T ss_pred hccEEEecCCccccccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 34699999999999989 99999987521111112222334444555544422
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 126 ---------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al 148 (232)
T cd03218 126 ---------------------------------------------------------LRKSKASSLSGGERRRVEIARAL 148 (232)
T ss_pred ---------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHH
Confidence 12334556899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+.+.. ..+..++.++
T Consensus 149 ~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tii~~sH~~~~~-~~~~d~i~~l 206 (232)
T cd03218 149 AT------NPKFLLLDEPFAGVDPIAVQ-----------DIQKIIKILKDRGIGVLITDHNVRET-LSITDRAYII 206 (232)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 98 99999999998876655543 66677766655678899999987633 2345566555
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=220.00 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=156.3
Q ss_pred ccccccccccccCCCCCCCCCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCC
Q psy91 56 LTFPEAYRIKMTPDGGSCATDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGD 127 (541)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~ 127 (541)
+.+.+-|+++..............+.+.++.+.|+...+|+++||+| +|+|||||||||||++|++ .+.+|+
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 44455555554432111111233567778888888777999999999 9999999999999999944 578899
Q ss_pred eeecccCCccceeccccccc-ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCC
Q psy91 128 RKVPNVNGSNTVIEVAGTKV-RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGE 206 (541)
Q Consensus 128 i~~~~~~G~~~~~~~~~~~~-~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL 206 (541)
|+ ++|..+.. .+.... +.+++.++||+|+..+++++ |+.||+.++....+....+..+++.++++.+|+
T Consensus 85 I~---i~G~~i~~-~~~~~l~~~~~~~igyv~Q~~~l~~~~------Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL 154 (400)
T PRK10070 85 VL---IDGVDIAK-ISDAELREVRRKKIAMVFQSFALMPHM------TVLDNTAFGMELAGINAEERREKALDALRQVGL 154 (400)
T ss_pred EE---ECCEECCc-CCHHHHHHHHhCCEEEEECCCcCCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 99 88873311 111111 11235799999999999999 999999886221222333444566677777777
Q ss_pred CCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccc
Q psy91 207 SGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 207 ~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+
T Consensus 155 ~~------------------------------------------------------------------------------ 156 (400)
T PRK10070 155 EN------------------------------------------------------------------------------ 156 (400)
T ss_pred Ch------------------------------------------------------------------------------
Confidence 43
Q ss_pred cCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcce
Q psy91 287 LYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTT 365 (541)
Q Consensus 287 ~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~ 365 (541)
+.++.+..+|+|++|++.|+++++. +++++|+|||..|.+..... ++.+.|.+..+ .++++
T Consensus 157 -~~~~~~~~LSgGq~QRv~LArAL~~------~P~iLLLDEPts~LD~~~r~-----------~l~~~L~~l~~~~g~TI 218 (400)
T PRK10070 157 -YAHSYPDELSGGMRQRVGLARALAI------NPDILLMDEAFSALDPLIRT-----------EMQDELVKLQAKHQRTI 218 (400)
T ss_pred -hhhcCcccCCHHHHHHHHHHHHHhc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHHHCCCeE
Confidence 1223455789999999999999998 99999999998775544432 66677776654 47899
Q ss_pred eeccccchhhhhcccceeEEEc
Q psy91 366 TIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 366 ~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+|+++.. .++..++.++.
T Consensus 219 IivTHd~~~~-~~~~Dri~vL~ 239 (400)
T PRK10070 219 VFISHDLDEA-MRIGDRIAIMQ 239 (400)
T ss_pred EEEECCHHHH-HHhCCEEEEEE
Confidence 9999998743 34556666653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=205.75 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=141.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
+.++|+++.|+++.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL---FDGEDI----TGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE---ECCEEC----CCCCHHHHH
Confidence 46789999998888999999999 9999999999999999965 46789999 888732 21111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccch----------hhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV----------HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~----------~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
+..++|++|+..+++.+ |+.+|+.++...... ......+.+.++++.+|+.+
T Consensus 74 ~~~i~~v~q~~~l~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------ 135 (236)
T cd03219 74 RLGIGRTFQIPRLFPEL------TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD------------ 135 (236)
T ss_pred hcCEEEEecccccccCC------CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc------------
Confidence 34699999999999999 999999876211110 01112223344444444322
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..+..+..+|+|+
T Consensus 136 -------------------------------------------------------------------~~~~~~~~LSgG~ 148 (236)
T cd03219 136 -------------------------------------------------------------------LADRPAGELSYGQ 148 (236)
T ss_pred -------------------------------------------------------------------hhhCChhhCCHHH
Confidence 2234456789999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+.
T Consensus 149 ~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~vsH~~~~~~-~~~ 210 (236)
T cd03219 149 QRRLEIARALAT------DPKLLLLDEPAAGLNPEETE-----------ELAELIRELRERGITVLLVEHDMDVVM-SLA 210 (236)
T ss_pred HHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhC
Confidence 999999999998 99999999998887665543 666777766556789999999887543 345
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 211 d~i~~l 216 (236)
T cd03219 211 DRVTVL 216 (236)
T ss_pred CEEEEE
Confidence 566555
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-24 Score=193.74 Aligned_cols=187 Identities=19% Similarity=0.285 Sum_probs=152.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++||+++|+++.+|+++|++| +|+|||||||||||.++ +...++|+|+ ++|. .+...+....+
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~---i~g~----~~~~~~s~~LA 74 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT---IDGL----ELTSTPSKELA 74 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEE---Eeee----ecccCChHHHH
Confidence 67899999999999999999999 99999999999999999 7788999999 8888 44455555667
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccc--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+.++.+-|+....-.+ ||++-+.|||+|.+ ....+.+..++++++.++|.++
T Consensus 75 k~lSILkQ~N~i~~rl------TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l-------------------- 128 (252)
T COG4604 75 KKLSILKQENHINSRL------TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL-------------------- 128 (252)
T ss_pred HHHHHHHhhchhhhee------EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch--------------------
Confidence 7788999999998899 99999999998864 4556777788888888877652
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+++...+||||+||.-|+..
T Consensus 129 -----------------------------------------------------------~dryLd~LSGGQrQRAfIAMV 149 (252)
T COG4604 129 -----------------------------------------------------------SDRYLDELSGGQRQRAFIAMV 149 (252)
T ss_pred -----------------------------------------------------------HHHhHHhcccchhhhhhhhee
Confidence 334455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhh
Q psy91 310 SMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEE 376 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~ 376 (541)
... +-.+.++||| ...|-.... ++++.|+.... .++|++++.|++.+..
T Consensus 150 laQ------dTdyvlLDEPLNNLDmkHsv------------~iMk~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 150 LAQ------DTDYVLLDEPLNNLDMKHSV------------QIMKILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred eec------cCcEEEecCcccccchHHHH------------HHHHHHHHHHHHhCCeEEEEEecccHHH
Confidence 988 8999999999 444433322 56666766644 4899999999987654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-23 Score=213.61 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=161.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++++++.|++..++++|||+| ||+|.||||||||+++| ...|++|+|+ ++|+.+.. ..+..
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~---v~G~~v~~---~sP~d 75 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR---VDGKEVRI---KSPRD 75 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE---ECCEEecc---CCHHH
Confidence 45789999999999999999999999 99999999999999999 5679999999 99984322 22334
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc---chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE---QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~---~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
..+..||+|+|++.|++.+ ||.||+.++..+. ........+++.++.+..|+.=
T Consensus 76 A~~~GIGMVhQHF~Lv~~l------TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v----------------- 132 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTL------TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV----------------- 132 (501)
T ss_pred HHHcCCcEEeecccccccc------chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-----------------
Confidence 5667899999999999999 9999999984332 2344556666666676666631
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
-++.++.++|-|++|+++
T Consensus 133 --------------------------------------------------------------dp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 133 --------------------------------------------------------------DPDAKVADLSVGEQQRVE 150 (501)
T ss_pred --------------------------------------------------------------CccceeecCCcchhHHHH
Confidence 234566778899999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|-++++. +++++|+|||+.-.+.... +.+.+.+....+.++++++.+|.++ +.++++.+++|
T Consensus 151 IlKaLyr------~a~iLILDEPTaVLTP~E~-----------~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTV 212 (501)
T COG3845 151 ILKALYR------GARLLILDEPTAVLTPQEA-----------DELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTV 212 (501)
T ss_pred HHHHHhc------CCCEEEEcCCcccCCHHHH-----------HHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEE
Confidence 9999999 9999999999765443222 2667778888889999999999977 55778889888
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+-
T Consensus 213 LR 214 (501)
T COG3845 213 LR 214 (501)
T ss_pred Ee
Confidence 74
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-23 Score=210.23 Aligned_cols=199 Identities=20% Similarity=0.196 Sum_probs=146.4
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++|+++.|+ .+.+|+++||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+ ......
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~ 75 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK---VMGREV----NAENEK 75 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE---ECCEEC----CCCCHH
Confidence 4689999999996 567999999999 9999999999999999955 57789999 888732 222222
Q ss_pred cccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||+|++. .++.. ||.+|+.|+....+.......+++..+++.+|+.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------------------- 130 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSS------TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD------------------- 130 (274)
T ss_pred HHHhhEEEEecChhhhhccC------cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-------------------
Confidence 33457999999863 44556 99999988632222233333445666677666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 131 ------------------------------------------------------------~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 131 ------------------------------------------------------------FRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred ------------------------------------------------------------HhcCChhhCCHHHHHHHHHH
Confidence 12234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... ++.+.|.+..+.+.++++.+|+++... .+..++.++
T Consensus 151 raL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tili~tH~~~~~~-~~~d~i~~l 211 (274)
T PRK13647 151 GVLAM------DPDVIVLDEPMAYLDPRGQE-----------TLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVL 211 (274)
T ss_pred HHHHc------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99999 99999999998887665543 677777776555889999999987543 345566555
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-23 Score=210.80 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=149.1
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.+.++|+++.|++ +.+|+|+||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+ ....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i----~~~~ 75 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII---IDGDLL----TEEN 75 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEC----CcCc
Confidence 36899999999974 45999999999 9999999999999999955 57899999 888732 2212
Q ss_pred cccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.+|||+|++ .+++.. ||.+|+.|+....+....+..+++..+++.+|+.+.
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---------------- 133 (279)
T PRK13650 76 VWDIRHKIGMVFQNPDNQFVGA------TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF---------------- 133 (279)
T ss_pred HHHHHhhceEEEcChHHhcccc------cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH----------------
Confidence 223345799999997 466677 999999887322233344445567777777777431
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
.++.+..+|+|++|++.
T Consensus 134 ---------------------------------------------------------------~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 134 ---------------------------------------------------------------KEREPARLSGGQKQRVA 150 (279)
T ss_pred ---------------------------------------------------------------hhCCcccCCHHHHHHHH
Confidence 12234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|.+..... .+.++|.+..+. ++++++.+|+++... .+.++.
T Consensus 151 lAral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tilivtH~~~~~~--~~dri~ 211 (279)
T PRK13650 151 IAGAVAM------RPKIIILDEATSMLDPEGRL-----------ELIKTIKGIRDDYQMTVISITHDLDEVA--LSDRVL 211 (279)
T ss_pred HHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEE
Confidence 9999999 99999999998887655443 677777777654 889999999987653 466666
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 212 ~l 213 (279)
T PRK13650 212 VM 213 (279)
T ss_pred EE
Confidence 65
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-23 Score=204.95 Aligned_cols=201 Identities=19% Similarity=0.246 Sum_probs=144.0
Q ss_pred Cceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+.+.+++|++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|+.+.. .+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~i~~-~~~~ 79 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI---FNGQPMSK-LSSA 79 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEcCc-CCHH
Confidence 45899999999974 46999999999 9999999999999999955 46789999 88873211 1111
Q ss_pred ccc-cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVR-GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~-~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
... .+++.++|++|+..+++.+ |+.+|+.++.........+..+++..+++.+|+.+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------------- 137 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDF------TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH---------------- 137 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------------
Confidence 101 1235699999999999888 99999987521111222233345666677666543
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..++.+..+|+|++|++
T Consensus 138 ---------------------------------------------------------------~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 138 ---------------------------------------------------------------RANHRPSELSGGERQRV 154 (233)
T ss_pred ---------------------------------------------------------------hhhCChhhCCHHHHHHH
Confidence 11223456899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .+.++++.+|+.+.... +. ++
T Consensus 155 ~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~-~~ 215 (233)
T PRK11629 155 AIARALVN------NPRLVLADEPTGNLDARNAD-----------SIFQLLGELNRLQGTAFLVVTHDLQLAKR-MS-RQ 215 (233)
T ss_pred HHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hC-EE
Confidence 99999998 99999999998887665553 66677776654 47899999999886543 33 44
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 216 ~~l 218 (233)
T PRK11629 216 LEM 218 (233)
T ss_pred EEE
Confidence 443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-23 Score=204.23 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=143.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|..+ .... ..
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~--~~ 72 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL---FGGEDA----TDVP--VQ 72 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CcCC--cc
Confidence 378999999999888999999999 9999999999999999955 46789999 888732 1111 12
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccch----hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV----HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~----~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++||+|+..+++.+ |+.+|+.++...... ......+.+..+++.+|+..
T Consensus 73 ~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 128 (239)
T cd03296 73 ERNVGFVFQHYALFRHM------TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW------------------ 128 (239)
T ss_pred ccceEEEecCCcccCCC------CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh------------------
Confidence 35699999999998888 999999876211111 11122234455555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 129 -------------------------------------------------------------~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 129 -------------------------------------------------------------LADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred -------------------------------------------------------------hhhcChhhCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..+.. .+.++|.+..+. ++++++.+|+.+... .+..++.+
T Consensus 148 a~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tvii~sH~~~~~~-~~~d~i~~ 209 (239)
T cd03296 148 ARALAV------EPKVLLLDEPFGALDAKVRK-----------ELRRWLRRLHDELHVTTVFVTHDQEEAL-EVADRVVV 209 (239)
T ss_pred HHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEE
Confidence 999998 99999999998886655543 667777776554 789999999987432 34556665
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 210 l~ 211 (239)
T cd03296 210 MN 211 (239)
T ss_pred EE
Confidence 53
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-23 Score=202.66 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=143.0
Q ss_pred eeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.| +++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i~~-~~~~~~~~~ 77 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW---FSGHDITR-LKNREVPFL 77 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccc-CChhHHHHH
Confidence 6789999999 6678999999999 9999999999999999955 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++.........+....+..+++.+|+.+
T Consensus 78 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 129 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDR------TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD---------------------- 129 (222)
T ss_pred HhheEEEecCccccccc------cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 45799999999888888 99999987521112222233334555666665532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 130 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 130 ---------------------------------------------------------KAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred ---------------------------------------------------------hhhCCchhCCHHHHHHHHHHHHH
Confidence 11223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.+.|.+..+.+.++++.+|+.+.... +..++.++
T Consensus 153 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~d~i~~l 210 (222)
T PRK10908 153 VN------KPAVLLADEPTGNLDDALSE-----------GILRLFEEFNRVGVTVLMATHDIGLISR-RSYRMLTL 210 (222)
T ss_pred Hc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHHH-hCCEEEEE
Confidence 98 99999999998887655543 5666666665557889999998775432 44455555
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-23 Score=228.38 Aligned_cols=229 Identities=19% Similarity=0.236 Sum_probs=165.1
Q ss_pred cCCcccccccc-cccccccCCCCCCCCC----CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHH
Q psy91 50 SCSPHCLTFPE-AYRIKMTPDGGSCATD----RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNS 118 (541)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~ 118 (541)
...+..+.|.+ .|+++......+.... ...-..++++++|+++.+|+|||+++ ||+|||||||||||++
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34467789999 9998755311111100 11225678899999999999999999 9999999999999999
Q ss_pred HhcCC----CCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceeccc---cccchhhH
Q psy91 119 LFLSD----LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT---LPEQVHRK 191 (541)
Q Consensus 119 L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~ 191 (541)
|+|.. .+|+|. ++|+.+ .. ..++.+|||+|++.+++.+ ||+||+.|+. ++.....+
T Consensus 114 LaG~~~~~~~sG~I~---inG~~~----~~----~~~~~i~yv~Q~~~l~~~l------TV~E~l~~~a~~~~~~~~~~~ 176 (659)
T PLN03211 114 LAGRIQGNNFTGTIL---ANNRKP----TK----QILKRTGFVTQDDILYPHL------TVRETLVFCSLLRLPKSLTKQ 176 (659)
T ss_pred HhCCCCCCceeEEEE---ECCEEC----ch----hhccceEEECcccccCCcC------CHHHHHHHHHHhCCCCCCCHH
Confidence 97653 268998 888722 11 2234689999999999999 9999998862 22223344
Q ss_pred hHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCC
Q psy91 192 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGES 271 (541)
Q Consensus 192 e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~s 271 (541)
+..++++++++.+|+.++.++.++
T Consensus 177 ~~~~~v~~~l~~lgL~~~~~t~vg-------------------------------------------------------- 200 (659)
T PLN03211 177 EKILVAESVISELGLTKCENTIIG-------------------------------------------------------- 200 (659)
T ss_pred HHHHHHHHHHHHcCChhhcCceeC--------------------------------------------------------
Confidence 555677888888888764322111
Q ss_pred cchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh
Q psy91 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQF 351 (541)
Q Consensus 272 g~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~ 351 (541)
+.....+|+|++|+++|+++++. +++++++|||..|.+..... .+
T Consensus 201 ------------------~~~~~~LSgGerqRv~ia~aL~~------~P~iLlLDEPtsgLD~~~~~-----------~l 245 (659)
T PLN03211 201 ------------------NSFIRGISGGERKRVSIAHEMLI------NPSLLILDEPTSGLDATAAY-----------RL 245 (659)
T ss_pred ------------------CCCCCCcChhhhhHHHHHHHHHh------CCCEEEEeCCCCCcCHHHHH-----------HH
Confidence 12244689999999999999999 99999999998886655543 66
Q ss_pred hhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 352 RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 352 ~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+.|.+..+.++++++.+|+.+.+...+..++.++
T Consensus 246 ~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL 280 (659)
T PLN03211 246 VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280 (659)
T ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence 77777766678999999998864333455555554
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-23 Score=201.72 Aligned_cols=200 Identities=17% Similarity=0.246 Sum_probs=142.7
Q ss_pred eeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.| +++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. .........
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~~ 77 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR---IAGEDVNR-LRGRQLPLL 77 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-CCHHHHHHH
Confidence 6789999999 4678999999999 9999999999999999955 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++....+.......+.+..+++.+|+..
T Consensus 78 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 129 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDR------TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH---------------------- 129 (214)
T ss_pred HhheEEEecChhhccCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 45799999999998888 99999987521111112222344555566655532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 130 ---------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 130 ---------------------------------------------------------KADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred ---------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHH
Confidence 11223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 153 ~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~tH~~~~~~-~~~d~i~~l 210 (214)
T TIGR02673 153 VN------SPPLLLADEPTGNLDPDLSE-----------RILDLLKRLNKRGTTVIVATHDLSLVD-RVAHRVIIL 210 (214)
T ss_pred hC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCEEEEe
Confidence 98 99999999998887665543 566667665555789999999876433 345565554
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=203.92 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=144.6
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|.++|+++.|+++ ++|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. ......
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL---VDGTDLTL-LSGKEL 77 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-CCHHHH
Confidence 6789999999876 8999999999 9999999999999999955 46789999 88873211 010111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++|++|+..+++.+ |+.||+.++..............+..+++.+|+.+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 132 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSR------TVFENVALPLEIAGVPKAEIEERVLELLELVGLED------------------- 132 (233)
T ss_pred HHHHhheEEEccCcccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------------------
Confidence 12245799999999999888 99999977521111222223344555666665532
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 133 ------------------------------------------------------------~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 133 ------------------------------------------------------------KADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred ------------------------------------------------------------hhhcChhhCCHHHHHHHHHH
Confidence 11223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.+++.+..+. ++++++.+|+.+.. ..+..++.++
T Consensus 153 ~al~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tvii~sH~~~~~-~~~~d~i~~l 214 (233)
T cd03258 153 RALAN------NPKVLLCDEATSALDPETTQ-----------SILALLRDINRELGLTIVLITHEMEVV-KRICDRVAVM 214 (233)
T ss_pred HHHhc------CCCEEEecCCCCcCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 99998 99999999998887665553 777788777654 78999999987743 2344555555
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-23 Score=202.53 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=141.3
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~~-~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL---FNGQSLSK-LSSNER 77 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEhhh-cCHhHH
Confidence 678999999974 46999999999 9999999999999999955 56789999 88873211 111111
Q ss_pred cc-ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RG-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.. +++.++||+|+..+++.+ |++||+.++.........+..+.+.++++.+|+..
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 133 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDF------TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH------------------ 133 (221)
T ss_pred HHHHHhcEEEEecccccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 11 225699999999999888 99999987521111112222334455555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|++.|
T Consensus 134 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 134 -------------------------------------------------------------RINHRPSELSGGERQRVAI 152 (221)
T ss_pred -------------------------------------------------------------hhhCChhhCCHHHHHHHHH
Confidence 1123345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..+.. .+.+.|.+..+ .++++++.+|+.+.... . .++.+
T Consensus 153 aral~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~-d~v~~ 213 (221)
T TIGR02211 153 ARALVN------QPSLVLADEPTGNLDNNNAK-----------IIFDLMLELNRELNTSFLVVTHDLELAKK-L-DRVLE 213 (221)
T ss_pred HHHHhC------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHhh-c-CEEEE
Confidence 999998 99999999998887665553 66667766654 37889999999886532 3 56665
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 214 l 214 (221)
T TIGR02211 214 M 214 (221)
T ss_pred E
Confidence 5
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-23 Score=203.13 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=144.0
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|+++ .+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ... .
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~-~ 73 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT---VDGFDV----VKE-P 73 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE---ECCEEc----ccC-H
Confidence 6789999999876 7999999999 9999999999999999955 46789999 888732 211 1
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++|++|+..+++.+ |+.||+.+.....+....+..+.+.++++.+|+.+.
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 129 (218)
T cd03266 74 AEARRRLGFVSDSTGLYDRL------TARENLEYFAGLYGLKGDELTARLEELADRLGMEEL------------------ 129 (218)
T ss_pred HHHHhhEEEecCCcccCcCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH------------------
Confidence 23345799999999999989 999999765211122233344556666776665321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+..+..+|+|++|++.|+
T Consensus 130 -------------------------------------------------------------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 130 -------------------------------------------------------------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred -------------------------------------------------------------HhhhhhhcCHHHHHHHHHH
Confidence 1123446899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 149 ral~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~tH~~~~~~-~~~d~i~~l 209 (218)
T cd03266 149 RALVH------DPPVLLLDEPTTGLDVMATR-----------ALREFIRQLRALGKCILFSTHIMQEVE-RLCDRVVVL 209 (218)
T ss_pred HHHhc------CCCEEEEcCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998 99999999998876655443 667777766555789999999876433 234455444
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-24 Score=221.01 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=147.1
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc---cccccc-
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV---AGTKVR- 148 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~---~~~~~~- 148 (541)
.-.++.+.|+...+|+|+||+| +|+|||||||||||++|++ .+++|+|+ ++|+.....+ +....+
T Consensus 26 ~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~---idG~~~~~~i~~~~~~~l~~ 102 (382)
T TIGR03415 26 TREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL---VKDGDGSIDVANCDAATLRR 102 (382)
T ss_pred CHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---ECCEecccccccCCHHHHHH
Confidence 3456778899999999999999 9999999999999999944 57889999 7775100011 111111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.++||||+..++|++ |+.||+.++....+....+...++.++++.+|+.+.
T Consensus 103 ~r~~~i~~vfQ~~~l~p~~------Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~------------------- 157 (382)
T TIGR03415 103 LRTHRVSMVFQKFALMPWL------TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW------------------- 157 (382)
T ss_pred HhcCCEEEEECCCcCCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-------------------
Confidence 2235799999999999999 999999987322233344455567777887777541
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+..+..+|+|++|++.|++
T Consensus 158 ------------------------------------------------------------~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 158 ------------------------------------------------------------ADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred ------------------------------------------------------------hcCChhhCCHHHHHHHHHHH
Confidence 12334568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|.+.... .++.+.|.+..+. ++++++.+|+++.. .++..++.++.
T Consensus 178 ALa~------~P~ILLlDEPts~LD~~~r-----------~~l~~~L~~l~~~~~~TII~iTHdl~e~-~~l~DrI~vl~ 239 (382)
T TIGR03415 178 AFAM------DADILLMDEPFSALDPLIR-----------TQLQDELLELQAKLNKTIIFVSHDLDEA-LKIGNRIAIME 239 (382)
T ss_pred HHhc------CCCEEEEECCCccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 9998 9999999999877554433 3666777766553 78999999998854 34566666653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=202.15 Aligned_cols=195 Identities=16% Similarity=0.267 Sum_probs=141.9
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++||++.|++ +.+|+++||++ ||+|||||||||||++|+| .+.+|+|. ++|..+. ... ..
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~----~~~-~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY---INGYSIR----TDR-KA 72 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEecc----cch-HH
Confidence 468899999987 78999999999 9999999999999999955 57789999 8887321 111 23
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|+..+++.+ |+.+|+.+.............+++.++++.+|+..
T Consensus 73 ~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------- 125 (220)
T cd03263 73 ARQSLGYCPQFDALFDEL------TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD--------------------- 125 (220)
T ss_pred HhhhEEEecCcCCccccC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH---------------------
Confidence 345699999999999888 99999987522112222233345556666666532
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+..+..+|+|++|++.|+++
T Consensus 126 ----------------------------------------------------------~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 126 ----------------------------------------------------------KANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred ----------------------------------------------------------HHhChhhhCCHHHHHHHHHHHH
Confidence 1122344689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+... .+..++.++
T Consensus 148 l~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sH~~~~~~-~~~d~i~~l 205 (220)
T cd03263 148 LIG------GPSVLLLDEPTSGLDPASRR-----------AIWDLILEVRK-GRSIILTTHSMDEAE-ALCDRIAIM 205 (220)
T ss_pred Hhc------CCCEEEECCCCCCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEcCCHHHHH-HhcCEEEEE
Confidence 998 99999999998876655443 66677776654 478899999877543 344555554
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-23 Score=201.45 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=138.4
Q ss_pred eecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 82 FATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 82 ~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
++++++.|++ +.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ ........+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL---VDGKDL----TKLSLKELR 74 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEEc----ccCCHHHHH
Confidence 6788999987 78999999999 9999999999999999955 56789999 888732 211122334
Q ss_pred ccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+.. .++.+ |+.+|+.++..............+..+++.+|+..
T Consensus 75 ~~i~~~~q~~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 126 (211)
T cd03225 75 RKVGLVFQNPDDQFFGP------TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG---------------------- 126 (211)
T ss_pred hhceEEecChhhhcCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh----------------------
Confidence 57899999974 35667 99999877521111112222334445555555422
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 127 ---------------------------------------------------------~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 127 ---------------------------------------------------------LRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ---------------------------------------------------------hhcCCcccCCHHHHHHHHHHHHH
Confidence 11234557899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 150 ~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 207 (211)
T cd03225 150 AM------DPDILLLDEPTAGLDPAGRR-----------ELLELLKKLKAEGKTIIIVTHDLDLLL-ELADRVIVL 207 (211)
T ss_pred hc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 667777766555789999999876443 345555554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-23 Score=201.17 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=140.5
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~---- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL---VDGEPV----T---- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----c----
Confidence 468899999987 78999999999 9999999999999999955 46789999 888722 1
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.++||+|+..+++.+ |+.+|+.++....+.......+.+..+++.+|+..
T Consensus 70 -~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 123 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWL------TVLDNVALGLELQGVPKAEARERAEELLELVGLSG------------------- 123 (220)
T ss_pred -cccCcEEEEecccccccCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------------------
Confidence 1245699999999888888 99999987521111122222334555565555532
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 124 ------------------------------------------------------------~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 124 ------------------------------------------------------------FENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred ------------------------------------------------------------hhhCCcccCCHHHHHHHHHH
Confidence 11223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..+.. .+.+++.+..+ .++++++.+|+.+... .+..++.++
T Consensus 144 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 205 (220)
T cd03293 144 RALAV------DPDVLLLDEPFSALDALTRE-----------QLQEELLDIWRETGKTVLLVTHDIDEAV-FLADRVVVL 205 (220)
T ss_pred HHHHc------CCCEEEECCCCCCCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887665543 66777776644 4788999999877432 344555554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-23 Score=200.84 Aligned_cols=193 Identities=15% Similarity=0.228 Sum_probs=141.4
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .. ..+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~----~~~ 69 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL---FDGKPL----DI----AAR 69 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCCch----hH----HHH
Confidence 46889999998888999999999 9999999999999999965 47789999 888732 11 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.+.....+.......+.+.++++.+|+.+.
T Consensus 70 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------- 121 (210)
T cd03269 70 NRIGYLPEERGLYPKM------KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY---------------------- 121 (210)
T ss_pred ccEEEeccCCcCCcCC------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH----------------------
Confidence 5789999999999888 999998765211112222333445556666555321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+..+..+|+|++|++.|+++++
T Consensus 122 ---------------------------------------------------------~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 122 ---------------------------------------------------------ANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ---------------------------------------------------------HhCcHhhCCHHHHHHHHHHHHHh
Confidence 11234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 145 ~------~p~~lllDEP~~~LD~~~~~-----------~~~~~l~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 201 (210)
T cd03269 145 H------DPELLILDEPFSGLDPVNVE-----------LLKDVIRELARAGKTVILSTHQMELVE-ELCDRVLLL 201 (210)
T ss_pred c------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHH-HhhhEEEEE
Confidence 8 99999999998887655543 566667666555789999999887533 234454444
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-23 Score=201.01 Aligned_cols=188 Identities=18% Similarity=0.222 Sum_probs=137.1
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc-cccccccc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG-TKVRGRQY 152 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~-~~~~~~~~ 152 (541)
++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. ... ......++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY---LNGKETPP-LNSKKASKFRRE 76 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEccc-cchhhHHHHHHh
Confidence 468899998888999999999 9999999999999999965 46789999 88873210 111 11112345
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.++|++|+..+++.+ |+.||+.++............+.+..+++.+|+..
T Consensus 77 ~i~~~~q~~~~~~~~------t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------ 126 (206)
T TIGR03608 77 KLGYLFQNFALIENE------TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL------------------------ 126 (206)
T ss_pred CeeEEecchhhccCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh------------------------
Confidence 799999999999888 99999987522111222233345556666665532
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
..++.+..+|+|++|++.|+++++.
T Consensus 127 -------------------------------------------------------~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 127 -------------------------------------------------------KLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred -------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1122345689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+++++|+|||..|-+..... .+.+.|.+..+.+.++++.+|+.++.
T Consensus 152 ------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 152 ------DPPLILADEPTGSLDPKNRD-----------EVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred ------CCCEEEEeCCcCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999998876655543 66667766655578899999998754
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-23 Score=200.69 Aligned_cols=199 Identities=20% Similarity=0.219 Sum_probs=143.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|..+.. ........+
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~--~~~~~~~~~ 75 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII---IDGLKLTD--DKKNINELR 75 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEECCc--cchhHHHHH
Confidence 46889999999888999999998 9999999999999999965 46789999 88873210 111112334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+..+++.+ |+.||+.++.. .......+..+++..+++.+|+.+
T Consensus 76 ~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 127 (213)
T cd03262 76 QKVGMVFQQFNLFPHL------TVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD---------------------- 127 (213)
T ss_pred hcceEEecccccCCCC------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------------------
Confidence 5799999999999888 99999987521 111122223334455555555432
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 128 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 128 ---------------------------------------------------------KADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ---------------------------------------------------------HhhhCccccCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 151 ~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~~sh~~~~~~-~~~d~i~~l 208 (213)
T cd03262 151 AM------NPKVMLFDEPTSALDPELVG-----------EVLDVMKDLAEEGMTMVVVTHEMGFAR-EVADRVIFM 208 (213)
T ss_pred hc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 566677766555788999999877443 344555554
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-23 Score=211.02 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=146.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+++++++|+++.+|+++||+| ||+|||||||||||++|+| .+++|+|. +.|..+ .... ...
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~---i~g~~~----~~~~-~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ---VCGEDV----LQNP-KEV 73 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEc----ccCh-HHH
Confidence 378999999999999999999999 9999999999999999954 57889999 888732 2111 123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+||++|+..+++.+ |+.||+.+.....+.+..+..+++..+++.+|+.+.
T Consensus 74 ~~~ig~~~q~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------------------- 126 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDM------YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE--------------------- 126 (301)
T ss_pred HhceEEecCCCCCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH---------------------
Confidence 45799999999999999 999999865211222233344556677777776531
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.++.+..+|+|++|++.|++++
T Consensus 127 ----------------------------------------------------------~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 127 ----------------------------------------------------------QHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ----------------------------------------------------------hcCchhhCCHHHHHHHHHHHHH
Confidence 1223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +|+++|+|||..|-+..... .+.+.+.+..+ ++++++.+|+++..+ .++.++.++
T Consensus 149 ~~------~p~lliLDEPt~gLD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~l~~~~-~~~d~i~~l 205 (301)
T TIGR03522 149 IH------DPKVLILDEPTTGLDPNQLV-----------EIRNVIKNIGK-DKTIILSTHIMQEVE-AICDRVIII 205 (301)
T ss_pred hc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEcCCHHHHH-HhCCEEEEE
Confidence 99 99999999998887765543 56666666544 688999999987332 355566555
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-23 Score=200.12 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=141.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ..+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~---~~g~~~----~~~~--~~~ 71 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY---IGGRDV----TDLP--PKD 71 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CcCC--ccc
Confidence 46889999999889999999999 9999999999999999965 46789999 888732 1111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++.........+..+.+..+++.+|+..
T Consensus 72 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (213)
T cd03301 72 RDIAMVFQNYALYPHM------TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH----------------------- 122 (213)
T ss_pred ceEEEEecChhhccCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------------------
Confidence 4699999999888888 99999987521111222333344555666665532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 123 --------------------------------------------------------LLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred --------------------------------------------------------HHhCChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.+.+.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 147 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 204 (213)
T cd03301 147 R------EPKVFLMDEPLSNLDAKLRV-----------QMRAELKRLQQRLGTTTIYVTHDQVEAM-TMADRIAVM 204 (213)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCeEEEE
Confidence 8 99999999998887655543 56666766654 3788999999876433 344455554
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-23 Score=202.23 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=144.8
Q ss_pred CCCceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc
Q psy91 76 DRDYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
+++.+.++||++.|++ ..+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~~~~-~~ 78 (228)
T PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS---LVGQPLHQ-MD 78 (228)
T ss_pred cCceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE---ECCEEccc-CC
Confidence 3456899999999975 35999999999 9999999999999999955 47789999 88873211 11
Q ss_pred ccc-cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTK-VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~-~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
... ...+.+.++|++|+..+++.+ |+.+|+.++............+++..+++.+|+.+
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------- 138 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTL------NALENVELPALLRGESSRQSRNGAKALLEQLGLGK-------------- 138 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCc------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh--------------
Confidence 000 011234699999999999888 99999987521111122233445566666666532
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..+..+..+|+|++|
T Consensus 139 -----------------------------------------------------------------~~~~~~~~LS~Ge~q 153 (228)
T PRK10584 139 -----------------------------------------------------------------RLDHLPAQLSGGEQQ 153 (228)
T ss_pred -----------------------------------------------------------------HhhCChhhCCHHHHH
Confidence 112234568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+.... ..
T Consensus 154 rl~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~~--~d 214 (228)
T PRK10584 154 RVALARAFNG------RPDVLFADEPTGNLDRQTGD-----------KIADLLFSLNREHGTTLILVTHDLQLAAR--CD 214 (228)
T ss_pred HHHHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHHh--CC
Confidence 9999999998 99999999998887765543 66677776644 37889999999886532 45
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 215 ~i~~l 219 (228)
T PRK10584 215 RRLRL 219 (228)
T ss_pred EEEEE
Confidence 55554
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-23 Score=208.69 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=147.8
Q ss_pred ceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.+++|++.|+. +.+|++|||+| ||+|||||||||||++|+| .+..|+|+ ++|..+... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~~--~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII---IDGVDITDK--KV 76 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE---ECCEECCCc--Cc
Confidence 3789999999974 46999999999 9999999999999999954 57789999 888732110 01
Q ss_pred ccccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+..+|||+|++. .+... ||++|+.|+....+....+..+++.++++.+|+.. .
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------------~- 135 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEE------TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY--------------E- 135 (287)
T ss_pred cHHHHhhceEEEecCchhccccc------cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc--------------h-
Confidence 11233467999999863 23346 99999988633223344555566777888777741 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ +.++.+..+|+|++|++
T Consensus 136 -------------------------------------------------------------~-~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 136 -------------------------------------------------------------D-YKDKSPFELSGGQKRRV 153 (287)
T ss_pred -------------------------------------------------------------h-hccCCcccCCHHHHHHH
Confidence 0 12334567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +|+++|+|||..|.+..... ++.++|.+..+. ++++++.+|+++... .++.++
T Consensus 154 ~iAraL~~------~P~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~drv 215 (287)
T PRK13637 154 AIAGVVAM------EPKILILDEPTAGLDPKGRD-----------EILNKIKELHKEYNMTIILVSHSMEDVA-KLADRI 215 (287)
T ss_pred HHHHHHHc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEE
Confidence 99999999 99999999998887665543 677777776554 789999999987543 355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~l~ 219 (287)
T PRK13637 216 IVMN 219 (287)
T ss_pred EEEE
Confidence 6663
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-23 Score=179.16 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=146.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-----CCCCeeecccCCccceeccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-----LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-----~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.++||+...++...|.++|++| .|||||||||||||..+.|.. .+|+++ ++++ .++..+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~---l~~~----~l~~lP- 73 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELW---LNEQ----RLDMLP- 73 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEE---ECCe----eccccc-
Confidence 356789998889999999999999 899999999999999994432 367787 7777 444433
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|++|||+.|||++ +|.+|+.|+ ++..+.....+..++.+++.+|+.|..
T Consensus 74 -a~qRq~GiLFQD~lLFphl------sVg~Nl~fA-lp~~~KG~aRr~~a~aAL~~~gL~g~f----------------- 128 (213)
T COG4136 74 -AAQRQIGILFQDALLFPHL------SVGQNLLFA-LPATLKGNARRNAANAALERSGLDGAF----------------- 128 (213)
T ss_pred -hhhhheeeeeccccccccc------ccccceEEe-cCcccccHHHHhhHHHHHHHhccchhh-----------------
Confidence 4456899999999999999 999999998 666666666677788899999988731
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
++.+..+|||++-++++.
T Consensus 129 --------------------------------------------------------------~~dP~tlSGGQrARvaL~ 146 (213)
T COG4136 129 --------------------------------------------------------------HQDPATLSGGQRARVALL 146 (213)
T ss_pred --------------------------------------------------------------hcChhhcCcchHHHHHHH
Confidence 234567899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccch
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMD 373 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~d 373 (541)
++++. .|+++++|||-. .++..+.+||+++...+.+ .+..++.++|+..
T Consensus 147 R~Lla------~Pk~lLLDEPFS-----------~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 147 RALLA------QPKALLLDEPFS-----------RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHh------CcceeeeCCchh-----------HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99888 899999999944 2556677899999777654 5777788887754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-23 Score=202.21 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=140.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-------CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-------SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-------~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+. .
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~~~~-~~~-~ 75 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL---LDGKDIYD-LDV-D 75 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEE---ECCEEhhh-cch-H
Confidence 46889999999889999999999 9999999999999999954 46789999 88873211 110 0
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhh-HhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHR-KSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~-~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++|++|+..++ .+ |+.||+.++........ .+..+++..+++.+|+.+.
T Consensus 76 ~~~~~~~i~~~~q~~~~~-~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------- 132 (227)
T cd03260 76 VLELRRRVGMVFQKPNPF-PG------SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE---------------- 132 (227)
T ss_pred HHHHHhhEEEEecCchhc-cc------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH----------------
Confidence 123345799999998887 78 99999987622111111 1233455566666665431
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCC-CCCCCCCCCcce
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK-VPNVNDRQGKTT 304 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~-~~~ls~g~~q~v 304 (541)
..... +..+|+|++|++
T Consensus 133 --------------------------------------------------------------~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 133 --------------------------------------------------------------VKDRLHALGLSGGQQQRL 150 (227)
T ss_pred --------------------------------------------------------------HhccCCcccCCHHHHHHH
Confidence 00011 356899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+. +++++.+|+.+... .+..++.
T Consensus 151 ~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~-~tii~~sH~~~~~~-~~~d~i~ 211 (227)
T cd03260 151 CLARALAN------EPEVLLLDEPTSALDPISTA-----------KIEELIAELKKE-YTIVIVTHNMQQAA-RVADRTA 211 (227)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhhC-cEEEEEeccHHHHH-HhCCEEE
Confidence 99999998 99999999998876655543 666777766555 78899999877432 3445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 212 ~l 213 (227)
T cd03260 212 FL 213 (227)
T ss_pred EE
Confidence 54
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-23 Score=204.60 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=143.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|.. +.......+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~---~~g~~----~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR---LNGRP----LADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEE----cccCCHHHh
Confidence 378999999999888999999999 9999999999999999955 46789999 88872 221112223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++............+.+..+++.+|+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 126 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPF------TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH---------------------- 126 (258)
T ss_pred hhheEEEccCCcCCCCC------CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh----------------------
Confidence 45789999998888888 99999987632221111222334555566665532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 127 ---------------------------------------------------------~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 127 ---------------------------------------------------------LAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred ---------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHH
Confidence 11233557899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.-.+-..+++++|+|||..|.+..... .+.++|.+.. +.+.++++.+|+.+... .++.++.++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 214 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQH-----------HVLRLARQLAHERGLAVIVVLHDLNLAA-RYADRIVLL 214 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCHHHHH-HhcCEEEEE
Confidence 7200000168999999998887665543 5666676665 45788999999877443 355566555
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-23 Score=207.56 Aligned_cols=198 Identities=19% Similarity=0.150 Sum_probs=148.0
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++||++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|..+ .....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~---~~g~~i----~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT---VGGMVL----SEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECCEEC----CcCcH
Confidence 46899999999974 56999999999 9999999999999999954 57789999 888732 22222
Q ss_pred ccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.+||++|+.. +++.. |+.+|+.++....+....+..+++..++..+|+.+
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------------ 132 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGA------TVQDDVAFGLENIGVPREEMVERVDQALRQVGMED------------------ 132 (279)
T ss_pred HHHhhheEEEEeCHHHhcccc------cHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 233457999999973 66667 99999987632222233444456677777777643
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 133 -------------------------------------------------------------FLNREPHRLSGGQKQRVAI 151 (279)
T ss_pred -------------------------------------------------------------hhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++|+|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++... . ..++.+
T Consensus 152 aral~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~l~~~~~~tilivsH~~~~~~-~-~d~i~~ 212 (279)
T PRK13635 152 AGVLAL------QPDIIILDEATSMLDPRGRR-----------EVLETVRQLKEQKGITVLSITHDLDEAA-Q-ADRVIV 212 (279)
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHcCCCEEEEEecCHHHHH-c-CCEEEE
Confidence 999999 99999999998887766553 677777776654 789999999988654 2 556655
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 213 l 213 (279)
T PRK13635 213 M 213 (279)
T ss_pred E
Confidence 5
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-23 Score=202.40 Aligned_cols=201 Identities=20% Similarity=0.227 Sum_probs=141.1
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++||++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|..+.. .........
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~~ 76 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL---IDGTDINK-LKGKALRQL 76 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEE---ECCEeccc-cCHhHHHHH
Confidence 468899999987 78999999999 9999999999999999955 46789999 88873211 010001123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc--------chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--------QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--------~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
++.++|++|+..+++.+ |+.+|+.++.... ........+.+..+++.+|+..
T Consensus 77 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------- 136 (241)
T cd03256 77 RRQIGMIFQQFNLIERL------SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-------------- 136 (241)
T ss_pred HhccEEEcccCcccccC------cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh--------------
Confidence 45799999999999889 9999998752110 0001111223333344443321
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..+..+..+|+|++|
T Consensus 137 -----------------------------------------------------------------~~~~~~~~LS~G~~q 151 (241)
T cd03256 137 -----------------------------------------------------------------KAYQRADQLSGGQQQ 151 (241)
T ss_pred -----------------------------------------------------------------hhCCCcccCCHHHHH
Confidence 123345679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ .++++++.+|+++... .+..
T Consensus 152 rv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~~d 213 (241)
T cd03256 152 RVAIARALMQ------QPKLILADEPVASLDPASSR-----------QVMDLLKRINREEGITVIVSLHQVDLAR-EYAD 213 (241)
T ss_pred HHHHHHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCC
Confidence 9999999998 99999999998887655543 66677776654 3788999999987543 3556
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 214 ~v~~l~ 219 (241)
T cd03256 214 RIVGLK 219 (241)
T ss_pred EEEEEE
Confidence 666653
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-23 Score=203.64 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=141.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .. ..
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~-----~~ 69 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT---LDGKPV----EG-----PG 69 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CC-----CC
Confidence 67899999998888999999999 9999999999999999965 46789999 888722 11 12
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..++|++|+..+++.+ |+.+|+.++....+....+..+++..+++.+|+.+
T Consensus 70 ~~~~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------------- 120 (255)
T PRK11248 70 AERGVVFQNEGLLPWR------NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG----------------------- 120 (255)
T ss_pred CcEEEEeCCCccCCCC------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 3479999999998888 99999987521112222223344555666665532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 121 --------------------------------------------------------~~~~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 121 --------------------------------------------------------AEKRYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred --------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..+.. .+.++|.+..+ .+.++++.+|+.+... .++.++.++
T Consensus 145 ~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~tviivsH~~~~~~-~~~d~i~~l 202 (255)
T PRK11248 145 A------NPQLLLLDEPFGALDAFTRE-----------QMQTLLLKLWQETGKQVLLITHDIEEAV-FMATELVLL 202 (255)
T ss_pred c------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998887765553 66666766533 4788999999887443 344555555
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-23 Score=203.06 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=144.7
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.+++++++|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF---IDGEDI----REQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCeEc----CcCChHHh
Confidence 467899999988 78999999999 9999999999999999955 46789999 888732 21111223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+..++|++|+..+++.+ |+.||+.++....+.......+.+.++++.+|+...
T Consensus 74 ~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~--------------------- 126 (242)
T cd03295 74 RRKIGYVIQQIGLFPHM------TVEENIALVPKLLKWPKEKIRERADELLALVGLDPA--------------------- 126 (242)
T ss_pred hcceEEEccCccccCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------------------
Confidence 45789999999999888 999999875211122223334456666777666420
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+.++.+..+|+|++|++.|++++
T Consensus 127 --------------------------------------------------------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 127 --------------------------------------------------------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred --------------------------------------------------------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 011223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.+.|.+..+. ++++++.+|+.+.. ..+..++.++
T Consensus 151 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~tvii~sH~~~~~-~~~~d~i~~l 209 (242)
T cd03295 151 AA------DPPLLLMDEPFGALDPITRD-----------QLQEEFKRLQQELGKTIVFVTHDIDEA-FRLADRIAIM 209 (242)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 98 99999999998887766553 666677766543 78899999987743 2345566555
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-23 Score=199.68 Aligned_cols=200 Identities=19% Similarity=0.276 Sum_probs=142.1
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+.. .........
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i~~-~~~~~~~~~ 76 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR---VNGQDVSD-LRGRAIPYL 76 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEccc-CCHHHHHHH
Confidence 467899999964 68999999999 9999999999999999965 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++||+|+..+++.+ |+.+|+.++.........+..+++..+++.+|+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (214)
T cd03292 77 RRKIGVVFQDFRLLPDR------NVYENVAFALEVTGVPPREIRKRVPAALELVGLSH---------------------- 128 (214)
T ss_pred HHheEEEecCchhccCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH----------------------
Confidence 45799999999999989 99999987621111222233344556666665532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 129 ---------------------------------------------------------KHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred ---------------------------------------------------------HhhCChhhcCHHHHHHHHHHHHH
Confidence 11223446899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..... .+.+++.+..+.+.++++.+|+.+... .+..++.++
T Consensus 152 ~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tiiivtH~~~~~~-~~~d~i~~l 209 (214)
T cd03292 152 VN------SPTILIADEPTGNLDPDTTW-----------EIMNLLKKINKAGTTVVVATHAKELVD-TTRHRVIAL 209 (214)
T ss_pred Hc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 566667666555788999999876543 244455444
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-23 Score=198.94 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=141.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~--~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT---FDGKSY----QKN--IEAL 71 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCCcc----cch--HHHH
Confidence 46889999998889999999999 9999999999999999955 56789999 888732 111 1234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.+....... ..+++..+++.+|+...
T Consensus 72 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~---------------------- 119 (208)
T cd03268 72 RRIGALIEAPGFYPNL------TARENLRLLARLLGI----RKKRIDEVLDVVGLKDS---------------------- 119 (208)
T ss_pred hhEEEecCCCccCccC------cHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHH----------------------
Confidence 5799999999999889 999999775211111 12344555666555321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.++.+..+|+|++|++.|+++++
T Consensus 120 ---------------------------------------------------------~~~~~~~LS~G~~qrv~la~al~ 142 (208)
T cd03268 120 ---------------------------------------------------------AKKKVKGFSLGMKQRLGIALALL 142 (208)
T ss_pred ---------------------------------------------------------HhhhHhhCCHHHHHHHHHHHHHh
Confidence 11234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 143 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~tH~~~~~~-~~~d~v~~l 199 (208)
T cd03268 143 G------NPDLLILDEPTNGLDPDGIK-----------ELRELILSLRDQGITVLISSHLLSEIQ-KVADRIGII 199 (208)
T ss_pred c------CCCEEEECCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-HhcCEEEEE
Confidence 8 99999999998887665543 666777766656788999999877443 244455554
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-23 Score=205.47 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=143.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~-~~~~~~~~ 81 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL---FDGENIPA-MSRSRLYT 81 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-cChhhHHH
Confidence 4689999999999889999999999 9999999999999999955 46789999 88873211 11111112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|+..+++.+ |+.+|+.++.... ..........+..+++.+|+.+
T Consensus 82 ~~~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------------------- 135 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDM------NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-------------------- 135 (269)
T ss_pred HhhcEEEEecccccCCCC------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh--------------------
Confidence 345699999999999888 9999998752111 1112222233444455554432
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+..+..+|+|++|++.|++
T Consensus 136 -----------------------------------------------------------~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 136 -----------------------------------------------------------AAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred -----------------------------------------------------------hhhCChhhCCHHHHHHHHHHH
Confidence 122345578999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..... .+.++|.+..+. ++++++.+|+++... .+..++.++
T Consensus 157 al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tiiivsH~~~~~~-~~~d~v~~l 217 (269)
T PRK11831 157 AIAL------EPDLIMFDEPFVGQDPITMG-----------VLVKLISELNSALGVTCVVVSHDVPEVL-SIADHAYIV 217 (269)
T ss_pred HHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEecCHHHHH-HhhCEEEEE
Confidence 9998 99999999998887665543 666777766544 789999999876433 344555555
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-23 Score=208.37 Aligned_cols=203 Identities=18% Similarity=0.177 Sum_probs=146.7
Q ss_pred ceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.+++|+++|++ +.+|+||||+| ||+|||||||||||++|+| .+.+|+|. ++|+.+.......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT---IGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECCEECccccccc
Confidence 3789999999974 46999999999 9999999999999999954 57789999 8887331110111
Q ss_pred ccccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 146 KVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.....++.+|||+|++ .++ .. ||.+|+.|+....+....+..+++..+++.+|+...
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-------------- 137 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EE------TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE-------------- 137 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hh------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh--------------
Confidence 1223445799999986 344 46 999999887322223334444567777777777420
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 138 ----------------------------------------------------------------~~~~~~~~LSgGq~qr 153 (290)
T PRK13634 138 ----------------------------------------------------------------LLARSPFELSGGQMRR 153 (290)
T ss_pred ----------------------------------------------------------------hhhCCcccCCHHHHHH
Confidence 1123455689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++... .+..+
T Consensus 154 v~lAraL~~------~P~llllDEPt~~LD~~~~~-----------~l~~~L~~l~~~~g~tviiitHd~~~~~-~~~dr 215 (290)
T PRK13634 154 VAIAGVLAM------EPEVLVLDEPTAGLDPKGRK-----------EMMEMFYKLHKEKGLTTVLVTHSMEDAA-RYADQ 215 (290)
T ss_pred HHHHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCE
Confidence 999999999 99999999998886655543 677777776554 789999999988543 34566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 216 v~~l~ 220 (290)
T PRK13634 216 IVVMH 220 (290)
T ss_pred EEEEE
Confidence 66653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-23 Score=192.41 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=148.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+++|.++|+.+.++++|||+| +++|||||||||.+.++ +..+++|.|+ ++|. ++...+...+
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~---ld~~----diT~lPm~~R 76 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL---LDDE----DITKLPMHKR 76 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE---ECCc----ccccCChHHH
Confidence 467889999999999999999999 99999999999999999 6678999999 8888 4444444333
Q ss_pred -cccEEEEeCCCccccccccccCCCcccceeccccccc--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 151 -QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 151 -~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..+||++|+...|..+ ||.+|+....-... ....+...+++.+|+.+++.++
T Consensus 77 ArlGigYLpQE~SIFr~L------tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl------------------ 132 (243)
T COG1137 77 ARLGIGYLPQEASIFRKL------TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL------------------ 132 (243)
T ss_pred hhcCcccccccchHhhcC------cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH------------------
Confidence 34689999999999999 99999976521111 1223444456677777776653
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+.+...+|||++++++|+
T Consensus 133 -------------------------------------------------------------r~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 133 -------------------------------------------------------------RDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred -------------------------------------------------------------hcCcccccccchHHHHHHH
Confidence 2334456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++++|||..|=+.-.-. .+.+.+......+--+.|..|..+ +.-.++.|.|+|-
T Consensus 152 RaLa~------~P~fiLLDEPFAGVDPiaV~-----------dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~ 213 (243)
T COG1137 152 RALAA------NPKFILLDEPFAGVDPIAVI-----------DIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIIS 213 (243)
T ss_pred HHHhc------CCCEEEecCCccCCCchhHH-----------HHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEe
Confidence 99998 99999999997774432221 233333344445667788888765 4457888999983
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-23 Score=201.94 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=142.2
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++||++.|+ ++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .........
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~~ 77 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL---LEGTDITK-LRGKKLRKL 77 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE---ECCEEhhh-CCHHHHHHH
Confidence 67899999998 778999999999 9999999999999999955 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccc--------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
++.++||+|+..+++.+ |+.+|+.++..... .......+++.++++.+|+..
T Consensus 78 ~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------- 137 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERL------TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-------------- 137 (243)
T ss_pred HhheEEEcCCCcccccc------cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh--------------
Confidence 45799999999999888 99999987632110 001122233444455544422
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..++.+..+|+|++|
T Consensus 138 -----------------------------------------------------------------~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 138 -----------------------------------------------------------------KAYQRADQLSGGQQQ 152 (243)
T ss_pred -----------------------------------------------------------------hhcCCcccCCHHHHH
Confidence 112345578999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ .+.++++.+|+.+... +++.
T Consensus 153 rv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~tH~~~~~~-~~~d 214 (243)
T TIGR02315 153 RVAIARALAQ------QPDLILADEPIASLDPKTSK-----------QVMDYLKRINKEDGITVIINLHQVDLAK-KYAD 214 (243)
T ss_pred HHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcC
Confidence 9999999999 99999999998876655443 56666766644 3788999999887542 3555
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 215 ~v~~l~ 220 (243)
T TIGR02315 215 RIVGLK 220 (243)
T ss_pred eEEEEE
Confidence 665553
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-23 Score=199.24 Aligned_cols=195 Identities=15% Similarity=0.226 Sum_probs=138.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
|.++|++++|+++.+|+++||++ ||+|||||||||||++|+| .+..|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR---FDGRDI----TGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEc----CCCCHHHHH
Confidence 46889999999888999999999 9999999999999999955 56789999 888622 11111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhC-CCCccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVG-ESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vG-L~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++.++|++|+..+++.+ |+++|+.++..... .......+..+++.++ +..
T Consensus 74 ~~~i~~~~q~~~~~~~~------t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~--------------------- 124 (222)
T cd03224 74 RAGIGYVPEGRRIFPEL------TVEENLLLGAYARR--RAKRKARLERVYELFPRLKE--------------------- 124 (222)
T ss_pred hcCeEEeccccccCCCC------cHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhh---------------------
Confidence 45699999999999989 99999987621111 1111222223333221 110
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+..+..+|+|++|++.|+++
T Consensus 125 ----------------------------------------------------------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 125 ----------------------------------------------------------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred ----------------------------------------------------------hhhCchhhCCHHHHHHHHHHHH
Confidence 1223455789999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 147 l~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 205 (222)
T cd03224 147 LMS------RPKLLLLDEPSEGLAPKIVE-----------EIFEAIRELRDEGVTILLVEQNARFAL-EIADRAYVL 205 (222)
T ss_pred Hhc------CCCEEEECCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhccEEEEe
Confidence 998 99999999998886655543 677777766555788999999877433 344555554
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-23 Score=208.44 Aligned_cols=203 Identities=18% Similarity=0.160 Sum_probs=145.9
Q ss_pred ceeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee-----
Q psy91 79 YIGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI----- 140 (541)
Q Consensus 79 ~i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~----- 140 (541)
.|.++||++.|++. .+|++|||+| ||+||||||||||+++|+| .+..|+|+ +.|.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~---~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE---WIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---Eeceecccccccc
Confidence 37899999999753 5999999999 9999999999999999954 57889999 66652210
Q ss_pred ---------cccc------cccccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHh
Q psy91 141 ---------EVAG------TKVRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVV 204 (541)
Q Consensus 141 ---------~~~~------~~~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~v 204 (541)
.+.. ......++.+|||+|++ ..+... ||.+|+.|+....+....+..+++..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ------TIEKDIIFGPVSMGVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccc------cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 0000 01123456799999985 233345 9999999874333344445556677778877
Q ss_pred CCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc
Q psy91 205 GESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 205 GL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~ 284 (541)
|+...
T Consensus 153 gL~~~--------------------------------------------------------------------------- 157 (305)
T PRK13651 153 GLDES--------------------------------------------------------------------------- 157 (305)
T ss_pred CCChh---------------------------------------------------------------------------
Confidence 77420
Q ss_pred cccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc
Q psy91 285 SDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT 364 (541)
Q Consensus 285 ~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt 364 (541)
+.++.+..+|+|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.+.+
T Consensus 158 ---~~~~~~~~LSgGqkqrvalA~aL~~------~P~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~t 217 (305)
T PRK13651 158 ---YLQRSPFELSGGQKRRVALAGILAM------EPDFLVFDEPTAGLDPQGVK-----------EILEIFDNLNKQGKT 217 (305)
T ss_pred ---hhhCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHCCCE
Confidence 1233456799999999999999999 99999999998886655443 566667666556889
Q ss_pred eeeccccchhhhhcccceeEEE
Q psy91 365 TTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+|+++... .+..++.++
T Consensus 218 iiivtHd~~~~~-~~adrv~vl 238 (305)
T PRK13651 218 IILVTHDLDNVL-EWTKRTIFF 238 (305)
T ss_pred EEEEeeCHHHHH-HhCCEEEEE
Confidence 999999987543 345566665
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-23 Score=209.15 Aligned_cols=189 Identities=16% Similarity=0.226 Sum_probs=140.4
Q ss_pred cccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 88 QVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 88 ~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
+|+++.+|+++||+| ||+|||||||||||++|+| .+++|+|. ++|..+ .... ...++.+||++|
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~-~~~~~~i~~~~q 73 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR---VAGYDV----VREP-RKVRRSIGIVPQ 73 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEc----ccCH-HHHHhhcEEecC
Confidence 577788999999999 9999999999999999955 57889999 888732 1111 123456999999
Q ss_pred CCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCC
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIP 239 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~ 239 (541)
+..+++.+ ||.||+.+.....+....+..+++..+++.+|+.+
T Consensus 74 ~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------------- 116 (302)
T TIGR01188 74 YASVDEDL------TGRENLEMMGRLYGLPKDEAEERAEELLELFELGE------------------------------- 116 (302)
T ss_pred CCCCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------------------------------
Confidence 99999999 99999987521122223334445666777777643
Q ss_pred CCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee
Q psy91 240 YSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319 (541)
Q Consensus 240 ~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~ 319 (541)
..++.+..+|+|++|++.|+++++. +
T Consensus 117 ------------------------------------------------~~~~~~~~LSgG~~qrv~la~al~~------~ 142 (302)
T TIGR01188 117 ------------------------------------------------AADRPVGTYSGGMRRRLDIAASLIH------Q 142 (302)
T ss_pred ------------------------------------------------HhCCchhhCCHHHHHHHHHHHHHhc------C
Confidence 1123345689999999999999999 9
Q ss_pred eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 320 ~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++|+|||..|.+..... .+.+++.+..+.+.++++.+|+++... .++.++.++.
T Consensus 143 p~lllLDEPt~gLD~~~~~-----------~l~~~l~~~~~~g~tvi~~sH~~~~~~-~~~d~v~~l~ 198 (302)
T TIGR01188 143 PDVLFLDEPTTGLDPRTRR-----------AIWDYIRALKEEGVTILLTTHYMEEAD-KLCDRIAIID 198 (302)
T ss_pred CCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCCEEEEEE
Confidence 9999999998887665543 666777776656889999999987433 3566666653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-23 Score=201.51 Aligned_cols=200 Identities=22% Similarity=0.251 Sum_probs=144.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|+ ++|..+.. . .......+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~-~~~~~~~~ 76 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI---VDGLKVND-P-KVDERLIR 76 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEECCc-C-ChhHHHHh
Confidence 67899999999888999999999 9999999999999999955 46789999 88873211 0 01112334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+..+++.+ |+.+|+.++... .+.......+.+.++++.+|+..
T Consensus 77 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------------------- 128 (240)
T PRK09493 77 QEAGMVFQQFYLFPHL------TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE---------------------- 128 (240)
T ss_pred hceEEEecccccCCCC------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH----------------------
Confidence 5799999999998888 999999875211 11122223344555565555532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 129 ---------------------------------------------------------RAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred ---------------------------------------------------------HHhcChhhcCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|-+..+.. .+.++|.+..+.++++++.+|+.+... .+..++.++.
T Consensus 152 ~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~ 210 (240)
T PRK09493 152 AV------KPKLMLFDEPTSALDPELRH-----------EVLKVMQDLAEEGMTMVIVTHEIGFAE-KVASRLIFID 210 (240)
T ss_pred hc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 98 99999999998887765553 666777766555789999999987543 3455665553
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-23 Score=210.25 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=149.5
Q ss_pred CCCceeeecccccccc-------------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccC
Q psy91 76 DRDYIGFATLPEQVHR-------------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVN 134 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-------------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~ 134 (541)
.++.++++||++.|+. ..+|+||||+| ||+|+||||||||+++|++ .+.+|+|+ ++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~---~~ 81 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA---WL 81 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE---EC
Confidence 3467899999999962 46999999999 9999999999999999954 56789999 88
Q ss_pred CccceecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCcc
Q psy91 135 GSNTVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLG 210 (541)
Q Consensus 135 G~~~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ 210 (541)
|..+.. ......+..++.++||+|+. .++|.+ |+.+|+.++.... ...+.+..+++.++++.+|+..
T Consensus 82 G~~i~~-~~~~~~~~~r~~i~~v~Q~~~~~l~p~~------tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-- 152 (331)
T PRK15079 82 GKDLLG-MKDDEWRAVRSDIQMIFQDPLASLNPRM------TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-- 152 (331)
T ss_pred CEECCc-CCHHHHHHHhCceEEEecCchhhcCCCC------CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh--
Confidence 874321 11111122345799999997 688889 9999998752111 1334445556666777766631
Q ss_pred chhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCC
Q psy91 211 KSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 290 (541)
Q Consensus 211 ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~ 290 (541)
.+.+
T Consensus 153 ----------------------------------------------------------------------------~~~~ 156 (331)
T PRK15079 153 ----------------------------------------------------------------------------NLIN 156 (331)
T ss_pred ----------------------------------------------------------------------------HHhc
Confidence 0112
Q ss_pred CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeecc
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEK 369 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~ 369 (541)
+++..+|+|++|++.|+++++. +++++|+|||..|.+..... ++.+.|.+..+. +.++++.+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~------~P~llilDEPts~LD~~~~~-----------~i~~lL~~l~~~~~~til~iT 219 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALIL------EPKLIICDEPVSALDVSIQA-----------QVVNLLQQLQREMGLSLIFIA 219 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEe
Confidence 3456799999999999999999 99999999998886665543 667777776553 78999999
Q ss_pred ccchhhhhcccceeEEE
Q psy91 370 KSMDIEERGVKLRLTVV 386 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvI 386 (541)
|+++... .+..++.++
T Consensus 220 Hdl~~~~-~~~dri~vl 235 (331)
T PRK15079 220 HDLAVVK-HISDRVLVM 235 (331)
T ss_pred CCHHHHH-HhCCEEEEE
Confidence 9987553 355566655
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-23 Score=206.63 Aligned_cols=204 Identities=18% Similarity=0.138 Sum_probs=145.3
Q ss_pred ceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.++||++.|++ +.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.......
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT---IAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEECccccccc
Confidence 4789999999974 46999999999 9999999999999999944 57789999 8887331110001
Q ss_pred ccccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|++. .+..+ |+.+|+.++.........+..+++..+++.+|+..
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------------- 136 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFEN------TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE---------------- 136 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccc------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------------
Confidence 11233457999999862 23356 99999987632222233344455666777776631
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.+.++.+..+|+|++|++
T Consensus 137 --------------------------------------------------------------~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 137 --------------------------------------------------------------DLISKSPFELSGGQMRRV 154 (287)
T ss_pred --------------------------------------------------------------hHhhCCcccCCHHHHHHH
Confidence 011234557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +|+++|+|||..|.+..... .+.++|.+..+.+.++++.+|+++... .++.++.
T Consensus 155 ~laral~~------~p~lLlLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~tvlivsH~~~~~~-~~~d~v~ 216 (287)
T PRK13641 155 AIAGVMAY------EPEILCLDEPAAGLDPEGRK-----------EMMQLFKDYQKAGHTVILVTHNMDDVA-EYADDVL 216 (287)
T ss_pred HHHHHHHc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEE
Confidence 99999999 99999999998887655543 566677666556889999999887543 3566666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 217 ~l~ 219 (287)
T PRK13641 217 VLE 219 (287)
T ss_pred EEE
Confidence 664
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-22 Score=199.76 Aligned_cols=196 Identities=21% Similarity=0.243 Sum_probs=143.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~i----~~~~~-~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS---VAGHDL----RRAPR-AAL 73 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCEEc----ccCCh-hhh
Confidence 67899999999889999999999 9999999999999999965 46789999 888732 11111 122
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+.............+.+.++++.+|+..
T Consensus 74 ~~i~~~~q~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------------- 124 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDL------SVRQNLRYHAALHGLSRAEARERIAALLARLGLAE----------------------- 124 (236)
T ss_pred hhEEEeCCCCCCcccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 4799999999888888 99999876521111222223334555555555532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 125 --------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 125 --------------------------------------------------------RADDKVRELNGGHRRRVEIARALL 148 (236)
T ss_pred --------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHHh
Confidence 112334568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..+.. .+.++|.+..+ .+.++++.+|+.+... . ..++.++.
T Consensus 149 ~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l~ 206 (236)
T TIGR03864 149 H------RPALLLLDEPTVGLDPASRA-----------AIVAHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVLH 206 (236)
T ss_pred c------CCCEEEEcCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEEe
Confidence 8 99999999998887665543 66677776653 4788999999987654 3 66666664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-23 Score=204.90 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=143.4
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-cccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGRQ 151 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~~ 151 (541)
.++++++.|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. .+.... ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~---i~g~~~~~-~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL---IDGQDIAA-MSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEccc-cChhhhhhhhc
Confidence 4668999999999999999999 9999999999999999955 46789999 88873211 111111 1123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++............+.+..+++.+|+.+
T Consensus 102 ~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 152 (269)
T cd03294 102 KKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALELVGLEG----------------------- 152 (269)
T ss_pred CcEEEEecCcccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------------------
Confidence 5799999999999889 99999987521111122223344556666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 153 --------------------------------------------------------~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 153 --------------------------------------------------------WEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred --------------------------------------------------------HhhCCcccCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..... .+.+++.+..+ .++++++.+|+++.. ..+..++.++.
T Consensus 177 ~------~p~illLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tiii~tH~~~~~-~~~~d~v~~l~ 235 (269)
T cd03294 177 V------DPDILLMDEAFSALDPLIRR-----------EMQDELLRLQAELQKTIVFITHDLDEA-LRLGDRIAIMK 235 (269)
T ss_pred c------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhcCEEEEEE
Confidence 8 99999999998887665543 66666766644 378999999987743 34556666653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-22 Score=201.15 Aligned_cols=203 Identities=18% Similarity=0.175 Sum_probs=144.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc-c---cc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA-G---TK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~-~---~~ 146 (541)
.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+..... . ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR---VGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEccccccccchhhH
Confidence 478999999999888999999999 9999999999999999965 46789999 88873211000 0 01
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++||+|+..+++.+ |+.||+.++... .........+.+..+++.+|+..
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------- 136 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHR------TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG----------------- 136 (250)
T ss_pred HHHhhhhEEEEecCcccCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------------
Confidence 122345799999999999888 999999875211 11122223334555566555532
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
..+..+..+|+|++|++.
T Consensus 137 --------------------------------------------------------------~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 137 --------------------------------------------------------------KETSYPRRLSGGQQQRVA 154 (250)
T ss_pred --------------------------------------------------------------hhhCChhhCChHHHHHHH
Confidence 112345568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+.+... .++.++.+
T Consensus 155 la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~~tH~~~~~~-~~~d~i~~ 216 (250)
T PRK11264 155 IARALAM------RPEVILFDEPTSALDPELVG-----------EVLNTIRQLAQEKRTMVIVTHEMSFAR-DVADRAIF 216 (250)
T ss_pred HHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEE
Confidence 9999998 99999999998887665543 566666666555788999999877432 34556655
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 217 l~ 218 (250)
T PRK11264 217 MD 218 (250)
T ss_pred EE
Confidence 53
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-22 Score=205.26 Aligned_cols=202 Identities=17% Similarity=0.156 Sum_probs=144.9
Q ss_pred eeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
|.++|+++.|+.. .+|++|||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+........
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT---VGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE---ECCEECcccccccc
Confidence 6889999999742 5999999999 9999999999999999954 57889999 88873311000111
Q ss_pred cccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
....++.+|||+|++ .++ .. ||.+|+.|+....+.+..+...++.++++.+|+...
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~-~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--------------- 136 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLF-EE------TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE--------------- 136 (288)
T ss_pred HHHHHhhEEEEecCcchhcc-cc------hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh---------------
Confidence 223456799999986 343 35 899999887322233444555667777777776320
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.++.+..+|+|++|++
T Consensus 137 ---------------------------------------------------------------~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 137 ---------------------------------------------------------------FWEKSPFELSGGQMRRV 153 (288)
T ss_pred ---------------------------------------------------------------hccCCcccCCHHHHHHH
Confidence 11233556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+|+++++. +++++|+|||..|.+..... .+.+.|.+..+.++++++.+|+++... .+..++.
T Consensus 154 aiA~aL~~------~p~illLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~til~vtHd~~~~~-~~~dri~ 215 (288)
T PRK13643 154 AIAGILAM------EPEVLVLDEPTAGLDPKARI-----------EMMQLFESIHQSGQTVVLVTHLMDDVA-DYADYVY 215 (288)
T ss_pred HHHHHHHh------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhCCEEE
Confidence 99999998 99999999998887655443 566666665555889999999987443 3455666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 216 ~l~ 218 (288)
T PRK13643 216 LLE 218 (288)
T ss_pred EEE
Confidence 653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-22 Score=196.34 Aligned_cols=190 Identities=19% Similarity=0.255 Sum_probs=137.1
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccccc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ . ..++.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~-----~~~~~ 69 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR---VFGKPL----E-----KERKR 69 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE---ECCccH----H-----HHHhh
Confidence 678999998888999999999 9999999999999999955 47789999 888732 1 13457
Q ss_pred EEEEeCCCcccc--ccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 154 WGVVEGSTVLTP--SLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 154 ~g~V~Q~~~l~~--~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
++||+|+..+.+ .+ |+.||+.++..... .......+++..+++.+|+..
T Consensus 70 i~~v~q~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 124 (213)
T cd03235 70 IGYVPQRRSIDRDFPI------SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE------------------- 124 (213)
T ss_pred eEEeccccccccCCCC------cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-------------------
Confidence 999999987642 36 99999987522110 011122234455555555432
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 125 ------------------------------------------------------------~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 125 ------------------------------------------------------------LADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred ------------------------------------------------------------HHhCCcccCCHHHHHHHHHH
Confidence 11234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|.+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 145 ~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 205 (213)
T cd03235 145 RALVQ------DPDLLLLDEPFAGVDPKTQE-----------DIYELLRELRREGMTILVVTHDLGLVL-EYFDRVLLL 205 (213)
T ss_pred HHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998 99999999998887665543 666777766556788999999977443 345555555
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=199.47 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=139.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+ .......
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~---~~g~~~----~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL---FKGQDL----LELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEE---ECCEec----CCCCHHH
Confidence 46889999999888999999999 99999999999999999664 6789999 888732 1111111
Q ss_pred -ccccEEEEeCCCccccccccccCCCcccceeccccccc-------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 150 -RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 150 -~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.+..++||+|+..+++.+ |+.+++.+...... ....+..+++..+++.+|+..
T Consensus 74 ~~~~~i~~v~q~~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 134 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGV------SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE------------- 134 (243)
T ss_pred hhccceEeeeccccccCCc------CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------------
Confidence 233589999999999988 99998876411000 011111223344444444421
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVNDRQ 300 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~g~ 300 (541)
.+.+..+. .+|+|+
T Consensus 135 -----------------------------------------------------------------~~~~~~~~~~LS~G~ 149 (243)
T TIGR01978 135 -----------------------------------------------------------------EFLNRSVNEGFSGGE 149 (243)
T ss_pred -----------------------------------------------------------------hhcccccccCcCHHH
Confidence 01223343 489999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+....-..
T Consensus 150 ~qrl~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~ 212 (243)
T TIGR01978 150 KKRNEILQMALL------EPKLAILDEIDSGLDIDALK-----------IVAEGINRLREPDRSFLIITHYQRLLNYIKP 212 (243)
T ss_pred HHHHHHHHHHhc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHCCcEEEEEEecHHHHHhhcC
Confidence 999999999998 99999999998876655543 6677777665567899999999875543224
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 213 d~i~~l 218 (243)
T TIGR01978 213 DYVHVL 218 (243)
T ss_pred CeEEEE
Confidence 555555
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-22 Score=200.48 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=145.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
.++.|.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|+.+.. .
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~-~ 78 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL---LDGENIYD-P 78 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE---ECCEEccc-c
Confidence 356799999999999888999999999 99999999999999999653 3689999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.......++.++|++|+..+++ . |+.+|+.++....+. ......+.+..+++.+|+....
T Consensus 79 -~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------- 139 (253)
T PRK14242 79 -HVDVVELRRRVGMVFQKPNPFP-K------SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV----------- 139 (253)
T ss_pred -ccCHHHHhhcEEEEecCCCCCc-C------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----------
Confidence 0111233457999999987776 6 899999876211111 1222334555666666653200
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
.. ..++.+..+|+|++
T Consensus 140 ----------------------------------------------------------~~------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 140 ----------------------------------------------------------KD------RLHESALGLSGGQQ 155 (253)
T ss_pred ----------------------------------------------------------hH------HhhCCcccCCHHHH
Confidence 00 11234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+... ++..
T Consensus 156 qrv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tvii~tH~~~~~~-~~~d 216 (253)
T PRK14242 156 QRLCIARALAV------EPEVLLMDEPASALDPIATQ-----------KIEELIHELKA-RYTIIIVTHNMQQAA-RVSD 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEEecHHHHH-HhCC
Confidence 99999999998 99999999998887655543 56666666533 678899999877443 3556
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 217 ~v~~l~ 222 (253)
T PRK14242 217 VTAFFY 222 (253)
T ss_pred EEEEEE
Confidence 666653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=190.80 Aligned_cols=200 Identities=14% Similarity=0.259 Sum_probs=142.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
+.+++++|+..||...+|++|||++ +|+|||||||||||++|+| ++.+|+|. +.|+ ++...+. +
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~---~~G~----dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII---FDGE----DITGLPPHE 74 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE---ECCe----ecCCCCHHH
Confidence 3578999999999999999999999 9999999999999999955 45579999 9999 4444433 2
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++||+|...+||.+ ||.||+.++...... +.......+.+.++
T Consensus 75 r~r~Gi~~VPegR~iF~~L------TVeENL~~g~~~~~~-~~~~~~~~e~v~~l------------------------- 122 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRL------TVEENLLLGAYARRD-KEAQERDLEEVYEL------------------------- 122 (237)
T ss_pred HHhCCeEeCcccccchhhC------cHHHHHhhhhhcccc-cccccccHHHHHHH-------------------------
Confidence 3456899999999999999 999999988332211 01111001111111
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.|.. .+ ..++....+|||++|.++|++
T Consensus 123 -------------------FP~L---------------------------------ke-r~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 123 -------------------FPRL---------------------------------KE-RRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred -------------------ChhH---------------------------------HH-HhcCcccCCChHHHHHHHHHH
Confidence 0000 00 123445679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++++|||+-|-+ .-|-+++.+.+.+..+. +-+++.+-...+.. ..+..+.||..
T Consensus 150 ALm~------~PklLLLDEPs~GLa-----------P~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A-l~iaDr~yvle 211 (237)
T COG0410 150 ALMS------RPKLLLLDEPSEGLA-----------PKIVEEIFEAIKELRKEGGMTILLVEQNARFA-LEIADRGYVLE 211 (237)
T ss_pred HHhc------CCCEEEecCCccCcC-----------HHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH-HHhhCEEEEEe
Confidence 9999 999999999999954 34555777777777755 55666555444432 34777888875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-22 Score=218.53 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=147.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc-ccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT-KVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~-~~~ 148 (541)
+.|.++|++++|+++.+|+++||+| ||+|||||||||||++|+| .+++|+|. ++|..+ ... ...
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL---YLGKEV----TFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCCHHH
Confidence 4689999999999889999999999 9999999999999999955 46789999 888732 111 111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
..++.++||+|+..+++.+ ||.||+.++.... .....+..+++.++++.+|+.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 133 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQL------TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF---------------- 133 (501)
T ss_pred HHhCCEEEEEcchhccCCC------cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC----------------
Confidence 1235699999999999999 9999998863211 1112223344555666666543
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..++.+..+|+|++|++
T Consensus 134 ---------------------------------------------------------------~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 134 ---------------------------------------------------------------SSDKLVGELSIGEQQMV 150 (501)
T ss_pred ---------------------------------------------------------------CccCchhhCCHHHHHHH
Confidence 12344567999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.+++.+..+.+.++++.+|+.+... .++.++.
T Consensus 151 ~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~~tvii~sHd~~~~~-~~~d~i~ 212 (501)
T PRK10762 151 EIAKVLSF------ESKVIIMDEPTDALTDTETE-----------SLFRVIRELKSQGRGIVYISHRLKEIF-EICDDVT 212 (501)
T ss_pred HHHHHHhc------CCCEEEEeCCcCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEE
Confidence 99999998 99999999998886665543 566666665555788999999877543 3555666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 213 ~l~ 215 (501)
T PRK10762 213 VFR 215 (501)
T ss_pred EEe
Confidence 553
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=199.61 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=145.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+ ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~i----~~~ 75 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY---LDGQDI----FKM 75 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEE---ECCEEC----CcC
Confidence 578999999999888999999999 999999999999999996642 589999 888732 211
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+++.++|++|+..+++.+ |+.+|+.++...... ...+..+.+..+++.+|+.....
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------ 137 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNL------SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK------------ 137 (250)
T ss_pred CHHHHhccEEEEeccCccCCCC------cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh------------
Confidence 2223456799999999888888 999999876211111 12333445666777776642000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ..+..+..+|+|++|+
T Consensus 138 --------------------------------------------------------------~-~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 138 --------------------------------------------------------------D-RLDAPAGKLSGGQQQR 154 (250)
T ss_pred --------------------------------------------------------------h-hhcCCcccCCHHHHHH
Confidence 0 1123355689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+.. ..+..++
T Consensus 155 v~laral~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~-~~~~d~i 215 (250)
T PRK14247 155 LCIARALAF------QPEVLLADEPTANLDPENTA-----------KIESLFLELKK-DMTIVLVTHFPQQA-ARISDYV 215 (250)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHH-HHhcCEE
Confidence 999999998 99999999998876655543 56666666544 68889999987743 2345566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~l~ 219 (250)
T PRK14247 216 AFLY 219 (250)
T ss_pred EEEE
Confidence 6653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=194.79 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=136.9
Q ss_pred eecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 82 FATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 82 ~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .. ..+++
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~---~~~~~ 71 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL---LNGKPI----KA---KERRK 71 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEh----hh---HHhhc
Confidence 5789999987 78999999999 9999999999999999955 57789999 888732 11 12345
Q ss_pred cEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 153 PWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 153 ~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
.++|++|+.. .+... |+.||+.++..... ....++..+++.+|+.+
T Consensus 72 ~i~~~~q~~~~~~~~~------tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~----------------------- 118 (205)
T cd03226 72 SIGYVMQDVDYQLFTD------SVREELLLGLKELD----AGNEQAETVLKDLDLYA----------------------- 118 (205)
T ss_pred ceEEEecChhhhhhhc------cHHHHHhhhhhhcC----ccHHHHHHHHHHcCCch-----------------------
Confidence 7999999964 23456 99999987521111 11134555666666543
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 119 --------------------------------------------------------~~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 119 --------------------------------------------------------LKERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred --------------------------------------------------------hcCCCchhCCHHHHHHHHHHHHHH
Confidence 122334568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 143 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 199 (205)
T cd03226 143 S------GKDLLIFDEPTSGLDYKNME-----------RVGELIRELAAQGKAVIVITHDYEFLA-KVCDRVLLL 199 (205)
T ss_pred h------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998886655443 667777766556889999999877432 344555554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=201.11 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=144.9
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
...+.++++++.|+++.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ ......
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL---LDAQPL----ESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE---ECCEeh----hhCCHH
Confidence 34689999999999889999999998 9999999999999999955 46789999 888732 111112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.+++.++|++|+..+++.+ |+.+|+.++.... . .......+++..+++.+|+.+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 139 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGM------TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP---------------- 139 (265)
T ss_pred HHhhheEEeccCCCCCCCc------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----------------
Confidence 3345799999998888888 9999998762111 0 001112233444555554422
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..+..+..+|+|++|++
T Consensus 140 ---------------------------------------------------------------~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 140 ---------------------------------------------------------------LAHRLVDSLSGGERQRA 156 (265)
T ss_pred ---------------------------------------------------------------HhcCCcccCCHHHHHHH
Confidence 12233557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|-+..... .+.+.|.+..+. +.++++.+|+++... ++..++
T Consensus 157 ~laral~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~l~~~~~~tiii~sH~~~~i~-~~~d~i 218 (265)
T PRK10575 157 WIAMLVAQ------DSRCLLLDEPTSALDIAHQV-----------DVLALVHRLSQERGLTVIAVLHDINMAA-RYCDYL 218 (265)
T ss_pred HHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEE
Confidence 99999998 99999999998887665543 666777766544 788999999877443 355566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 219 ~~l~ 222 (265)
T PRK10575 219 VALR 222 (265)
T ss_pred EEEE
Confidence 6653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-22 Score=210.47 Aligned_cols=219 Identities=19% Similarity=0.233 Sum_probs=166.7
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
..+.++++|++|+|++..+|++|||++ ||+|.||||||||+|+| ...+++|+|+ ++|+.... ..+.
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~---~~G~~~~~---~sp~ 78 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL---IDGKPVAF---SSPR 78 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE---ECCEEccC---CCHH
Confidence 345789999999999999999999999 99999999999999999 4578899999 88983211 2233
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.|+|+.+|.|++ ||.||+.+++.+.. +..+...+++..+|..+|+..
T Consensus 79 ~A~~~GI~~V~QEl~L~p~L------sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~--------------- 137 (500)
T COG1129 79 DALAAGIATVHQELSLVPNL------SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI--------------- 137 (500)
T ss_pred HHHhCCcEEEeechhccCCc------cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC---------------
Confidence 45567899999999999999 99999999976643 244555566666676666531
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
-++..+.++|.+++|.
T Consensus 138 ----------------------------------------------------------------~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 138 ----------------------------------------------------------------DPDTLVGDLSIAQRQM 153 (500)
T ss_pred ----------------------------------------------------------------ChhhhhhhCCHHHHHH
Confidence 1223455678899999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
|+|++++.. +.+++|+|||+.-.+..... ++.+.+.+....+.++++.+|.++ +-..++.++
T Consensus 154 VeIArAl~~------~arllIlDEPTaaLt~~E~~-----------~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~Dri 215 (500)
T COG1129 154 VEIARALSF------DARVLILDEPTAALTVKETE-----------RLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRI 215 (500)
T ss_pred HHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEE
Confidence 999999988 89999999997765544332 677778888889999999999876 445688888
Q ss_pred EEEc---CCCC---CCCCCcHHHHHH
Q psy91 384 TVVD---TPGF---GDSINSEESWRA 403 (541)
Q Consensus 384 nvIp---vi~k---~D~lt~~e~~~~ 403 (541)
+|.- .++- ...++.+++.+.
T Consensus 216 tVlRDG~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 216 TVLRDGRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred EEEeCCEEeeecccccCCCHHHHHHH
Confidence 8863 1222 235566555443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=203.15 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=145.1
Q ss_pred Cceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++|+++.|+ ++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .....
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~i----~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK---IDGITI----SKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEec----CcCCH
Confidence 4689999999995 467999999999 9999999999999999955 46789999 888732 21122
Q ss_pred ccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.++|++|+.. .++.+ |+.+|+.++.........+....+.++++.+|+.+
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 134 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGA------TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED------------------ 134 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcc------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH------------------
Confidence 233457999999964 56667 99999987622112222333445666666666632
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 135 -------------------------------------------------------------~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 135 -------------------------------------------------------------YLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred -------------------------------------------------------------HhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|.+..... .+.++|.+..+. ++++++.+|+.+... ...++.+
T Consensus 154 aral~~------~p~lllLDEP~~gLD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~--~~d~v~~ 214 (271)
T PRK13632 154 ASVLAL------NPEIIIFDESTSMLDPKGKR-----------EIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIV 214 (271)
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEEechhHHh--hCCEEEE
Confidence 999998 99999999998887665543 667777776554 488999999987653 4566666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 215 l~ 216 (271)
T PRK13632 215 FS 216 (271)
T ss_pred EE
Confidence 53
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-22 Score=203.83 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=147.7
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
..|.++|+++.|+ ++.+|+++||+| ||+||||||||||+++|+| .+.+|+|. ++|..+. .......
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~---i~g~~~~--~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL---FDGKPID--YSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEE---ECCEECC--CCcchHH
Confidence 3689999999996 577999999999 9999999999999999954 57789999 8887321 0111122
Q ss_pred cccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+..+||++|++. .+... |+.+|+.++....+.+..+..+++..+++.+|+.+
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------------- 133 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSA------SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH------------------- 133 (283)
T ss_pred HHHhhEEEEecCcchhhccc------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-------------------
Confidence 34467999999863 23346 99999987632222333444456677777777643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 134 ------------------------------------------------------------~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 134 ------------------------------------------------------------LKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred ------------------------------------------------------------hhhCCcccCCHHHHHHHHHH
Confidence 11234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||..|.+..+.. ++.++|.+..+. ++++++.+|+++... .++.++.++
T Consensus 154 raL~~------~p~lLilDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tillvsH~~~~~~-~~~dri~~l 215 (283)
T PRK13636 154 GVLVM------EPKVLVLDEPTAGLDPMGVS-----------EIMKLLVEMQKELGLTIIIATHDIDIVP-LYCDNVFVM 215 (283)
T ss_pred HHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887665553 677777777654 789999999988643 345566665
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=199.85 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=140.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~---~~g~~~---------~ 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL---AGTAPL---------A 77 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEH---------H
Confidence 35689999999999889999999999 9999999999999999965 46789988 766521 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++|++|+..+++.+ |+.||+.++... ....++..+++.+|+.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~~------tv~enl~~~~~~------~~~~~~~~~l~~~gl~~-------------------- 125 (257)
T PRK11247 78 EAREDTRLMFQDARLLPWK------KVIDNVGLGLKG------QWRDAALQALAAVGLAD-------------------- 125 (257)
T ss_pred HhhCceEEEecCccCCCCC------cHHHHHHhcccc------hHHHHHHHHHHHcCChh--------------------
Confidence 2345699999999999888 999999875211 11234555566665532
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+..+..+|+|++|++.|++
T Consensus 126 -----------------------------------------------------------~~~~~~~~LSgGqkqrl~lar 146 (257)
T PRK11247 126 -----------------------------------------------------------RANEWPAALSGGQKQRVALAR 146 (257)
T ss_pred -----------------------------------------------------------HhcCChhhCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 147 aL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~~tviivsHd~~~~~-~~~d~i~~l 207 (257)
T PRK11247 147 ALIH------RPGLLLLDEPLGALDALTRI-----------EMQDLIESLWQQHGFTVLLVTHDVSEAV-AMADRVLLI 207 (257)
T ss_pred HHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 9998 99999999998887655543 56666666543 4788999999987532 233444443
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-22 Score=197.80 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=141.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-ccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK-VRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~-~~~ 149 (541)
.+.+++++++|+++.+|+++||++ ||+|||||||||||++|+| .+.+|+|. ++|..+ .... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~ 75 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII---IDDEDI----SLLPLHAR 75 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCCHHHH
Confidence 478999999999889999999999 9999999999999999965 46789999 888732 1111 112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|+..+++.+ |+.||+.+..... .....+...++..+++.+|+.+
T Consensus 76 ~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------- 129 (241)
T PRK10895 76 ARRGIGYLPQEASIFRRL------SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-------------------- 129 (241)
T ss_pred HHhCeEEeccCCcccccC------cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH--------------------
Confidence 345799999999998888 9999997752111 1112223334555555555432
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+..+..+|+|++|++.|++
T Consensus 130 -----------------------------------------------------------~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 130 -----------------------------------------------------------LRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred -----------------------------------------------------------HhhcchhhCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..... .+.+.+.+..+.++++++.+|+.+... .+..++.++
T Consensus 151 al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiii~sH~~~~~~-~~~d~v~~l 210 (241)
T PRK10895 151 ALAA------NPKFILLDEPFAGVDPISVI-----------DIKRIIEHLRDSGLGVLITDHNVRETL-AVCERAYIV 210 (241)
T ss_pred HHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEEcCHHHHH-HhcCEEEEE
Confidence 9998 99999999998886655443 555666665555789999999876333 244455554
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=204.44 Aligned_cols=202 Identities=18% Similarity=0.131 Sum_probs=143.0
Q ss_pred eeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.++||++.|++ +.+|++|||+| ||+|||||||||||++|+| .+..|+|+ ++|..+........
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~---~~g~~i~~~~~~~~ 79 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT---VDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEECccccccch
Confidence 789999999964 36999999999 9999999999999999954 57789999 88873211101111
Q ss_pred cccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.+|||+|++. .+... |+.+|+.|+....+....+..+++..++..+|+..
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------------- 136 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFED------TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------------- 136 (286)
T ss_pred HHHHHhheEEEecChHhccchh------hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----------------
Confidence 2234567999999852 22235 89999988632222233344455666666666531
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
...+..+..+|+|++|++.
T Consensus 137 -------------------------------------------------------------~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 137 -------------------------------------------------------------DVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred -------------------------------------------------------------hhhhCCcccCCHHHHHHHH
Confidence 0122345678999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|.+..... .+.+++.+..+ .+.|+++.+|+++... ....++.
T Consensus 156 laraL~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvl~vtH~~~~~~-~~~dri~ 217 (286)
T PRK13646 156 IVSILAM------NPDIIVLDEPTAGLDPQSKR-----------QVMRLLKSLQTDENKTIILVSHDMNEVA-RYADEVI 217 (286)
T ss_pred HHHHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEE
Confidence 9999999 99999999998886655543 67777777654 4789999999987533 2445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 218 ~l 219 (286)
T PRK13646 218 VM 219 (286)
T ss_pred EE
Confidence 55
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=204.76 Aligned_cols=206 Identities=20% Similarity=0.171 Sum_probs=146.2
Q ss_pred CCCceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~ 142 (541)
..+.|.++|+++.|++ +.+|+||||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+....
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~---i~g~~~~~~~ 94 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ---VGDIYIGDKK 94 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---ECCEEccccc
Confidence 3457999999999974 35999999999 9999999999999999955 57789999 7776321110
Q ss_pred ------------cccccccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 143 ------------AGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 143 ------------~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
........++.+|||+|++ .++ .. |+.+|+.|+.........+..+++..+++.+|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KD------TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccc-cc------hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 0001123456799999986 344 35 89999988732222333344456666677766631
Q ss_pred ccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccC
Q psy91 209 LGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 288 (541)
Q Consensus 209 ~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~ 288 (541)
.+
T Consensus 168 ------------------------------------------------------------------------------~~ 169 (320)
T PRK13631 168 ------------------------------------------------------------------------------SY 169 (320)
T ss_pred ------------------------------------------------------------------------------hH
Confidence 01
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeec
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~ 368 (541)
.++.+..+|+|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.++++++.
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~------~p~iLLLDEPtsgLD~~~~~-----------~l~~~L~~l~~~g~Tiiiv 232 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAI------QPEILIFDEPTAGLDPKGEH-----------EMMQLILDAKANNKTVFVI 232 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEE
Confidence 123455789999999999999999 99999999998886655543 6666776665568899999
Q ss_pred cccchhhhhcccceeEEEc
Q psy91 369 KKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 369 ~~~~di~~~~l~~rvnvIp 387 (541)
+|+++... .+..++.++.
T Consensus 233 tHd~~~~~-~~adri~vl~ 250 (320)
T PRK13631 233 THTMEHVL-EVADEVIVMD 250 (320)
T ss_pred ecCHHHHH-HhCCEEEEEE
Confidence 99987432 3445666553
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=199.82 Aligned_cols=205 Identities=18% Similarity=0.152 Sum_probs=145.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
+..+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|+ ++|+.+.. .
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~---~~g~~i~~-~- 76 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR---LFGRNIYS-P- 76 (253)
T ss_pred cceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE---ECCEEccc-c-
Confidence 34689999999999888999999999 999999999999999996642 389999 88873310 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.......++.++|++|+..+++.+ |+.+|+.++...... ........+..+++.+|+...
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 138 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHL------TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE------------ 138 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCC------cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc------------
Confidence 111112345799999999999888 999999875221111 122333455666666665320
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. . ..+..+..+|+|++
T Consensus 139 ---------------------------------------------------------~~-----~-~~~~~~~~LS~G~~ 155 (253)
T PRK14267 139 ---------------------------------------------------------VK-----D-RLNDYPSNLSGGQR 155 (253)
T ss_pred ---------------------------------------------------------hh-----h-hhccChhhCCHHHH
Confidence 00 0 01234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+.. ..+..
T Consensus 156 qrv~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~-~~~~d 216 (253)
T PRK14267 156 QRLVIARALAM------KPKILLMDEPTANIDPVGTA-----------KIEELLFELKK-EYTIVLVTHSPAQA-ARVSD 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhh-CCEEEEEECCHHHH-HhhCC
Confidence 99999999998 99999999998887655543 56666666543 57899999987743 33555
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 217 ~i~~l 221 (253)
T PRK14267 217 YVAFL 221 (253)
T ss_pred EEEEE
Confidence 66555
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=199.99 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=142.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF---LGDKPI----SMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEE---ECCEEh----HHCCHHHH
Confidence 378999999999889999999998 9999999999999999955 56789999 888722 11111223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++|++|+..+++.+ |+.+|+.++.... ........+.+..+++.+|+..
T Consensus 75 ~~~i~~~~q~~~~~~~~------tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 130 (255)
T PRK11231 75 ARRLALLPQHHLTPEGI------TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH------------------ 130 (255)
T ss_pred hhheEEecccCCCCCCc------cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH------------------
Confidence 45699999999888888 9999988762110 0011122233444555555431
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.+..+..+|+|++|++.|
T Consensus 131 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 131 -------------------------------------------------------------LADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred -------------------------------------------------------------HHcCCcccCCHHHHHHHHH
Confidence 1223456789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 150 aral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~l~~~~~tiii~tH~~~~~~-~~~d~i~~l 211 (255)
T PRK11231 150 AMVLAQ------DTPVVLLDEPTTYLDINHQV-----------ELMRLMRELNTQGKTVVTVLHDLNQAS-RYCDHLVVL 211 (255)
T ss_pred HHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEECCHHHHH-HhcCEEEEE
Confidence 999999 99999999998886655443 566667665555788999999877432 355555555
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-22 Score=202.61 Aligned_cols=197 Identities=18% Similarity=0.167 Sum_probs=144.4
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc-cccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT-KVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~-~~~~ 149 (541)
+.++||++.|+ .+.+|++|||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+ ... ....
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL---VSGIDT----GDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEEC----CccccHHH
Confidence 67899999995 567999999999 9999999999999999954 56789999 888732 111 1123
Q ss_pred ccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|++. .+... |+.+|+.++....+.......+.+..+++.+|+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------------------- 128 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGR------TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-------------------- 128 (274)
T ss_pred HHhheEEEEEChhhhcccc------hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH--------------------
Confidence 3457999999875 35556 99999987632222233334445666676666643
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.+..+..+|+|++|++.|++
T Consensus 129 -----------------------------------------------------------~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 129 -----------------------------------------------------------YRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred -----------------------------------------------------------HhcCCcccCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|.+..+.. .+.+.|.+..+.+.++++.+|+++... ...++.++.
T Consensus 150 al~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~til~~tH~~~~~~--~~d~v~~l~ 209 (274)
T PRK13644 150 ILTM------EPECLIFDEVTSMLDPDSGI-----------AVLERIKKLHEKGKTIVYITHNLEELH--DADRIIVMD 209 (274)
T ss_pred HHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHh--hCCEEEEEE
Confidence 9999 99999999998887765543 666677766556889999999988653 366666663
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-22 Score=217.64 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=146.2
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C--CCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D--LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~--~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++|++++|+++.+|++|||+| +|+|||||||||||++|+|. + .+|+|. ++|..+ .....
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~---~~g~~~----~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII---FEGEEL----QASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE---ECCEEC----CCCCH
Confidence 4689999999999889999999999 99999999999999999654 2 589999 888732 21111
Q ss_pred -ccccccEEEEeCCCccccccccccCCCcccceecccccc--c-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 -RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--Q-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 -~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
..+++.+|||+|+..+++.+ ||.||+.++.... . .......+++.++++.+|+.+
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------- 135 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKEL------SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI--------------- 135 (506)
T ss_pred HHHHHCCeEEEEeccccCCCC------cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC---------------
Confidence 12245699999999999999 9999998863211 1 122223344555666665532
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 136 ----------------------------------------------------------------~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 136 ----------------------------------------------------------------NPATPVGNLGLGQQQL 151 (506)
T ss_pred ----------------------------------------------------------------CcccchhhCCHHHHHH
Confidence 2233456799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|.+..... .+.++|.+..+.+.++++.+|+++... .++.++
T Consensus 152 v~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~~tvi~~tH~~~~~~-~~~d~v 213 (506)
T PRK13549 152 VEIAKALNK------QARLLILDEPTASLTESETA-----------VLLDIIRDLKAHGIACIYISHKLNEVK-AISDTI 213 (506)
T ss_pred HHHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCcHHHHH-HhcCEE
Confidence 999999998 99999999998776655443 566666666555788999999977543 344555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 214 ~~l~ 217 (506)
T PRK13549 214 CVIR 217 (506)
T ss_pred EEEE
Confidence 5553
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-22 Score=203.46 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=146.1
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCC---CCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLY---GDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~---G~i~~~~~~G~~~~~~~~~ 144 (541)
..|.++|+++.|++ +.+|+++||+| ||+|||||||||||++|+|. +.. |+|. ++|..+ ..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~---i~g~~~----~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT---VDGITL----TA 76 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEE---ECCEEC----Cc
Confidence 36899999999964 46999999999 99999999999999999664 444 8999 888732 22
Q ss_pred cccccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.+|||+|+.. +++.. ||.+|+.|+.........+..+++..+++.+|+.+
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--------------- 135 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGA------TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD--------------- 135 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccC------CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh---------------
Confidence 122233457999999974 66678 99999987621122233344455666677666643
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 136 ----------------------------------------------------------------~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 136 ----------------------------------------------------------------YIDSEPANLSGGQKQR 151 (282)
T ss_pred ----------------------------------------------------------------HhcCCcccCCHHHHHH
Confidence 1123345789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++... .+.+
T Consensus 152 v~laral~~------~P~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tvli~tH~~~~~~--~~d~ 212 (282)
T PRK13640 152 VAIAGILAV------EPKIIILDESTSMLDPAGKE-----------QILKLIRKLKKKNNLTVISITHDIDEAN--MADQ 212 (282)
T ss_pred HHHHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCE
Confidence 999999999 99999999998887665543 666777766553 789999999988653 4666
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 213 i~~l 216 (282)
T PRK13640 213 VLVL 216 (282)
T ss_pred EEEE
Confidence 6665
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-22 Score=199.23 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=149.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec-------
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE------- 141 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~------- 141 (541)
++.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV---VNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEccccccccccc
Confidence 35689999999999889999999999 9999999999999999955 46789999 888733110
Q ss_pred --ccccccccccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 --VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 --~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.........++.++||+|+..+++.+ |++||+.++... .........+++.++++.+|+.+.
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------- 144 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHM------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDER--------- 144 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCC------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 00001123345799999999999989 999999764211 112223334455666666666431
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
..+..+..+|+
T Consensus 145 ---------------------------------------------------------------------~~~~~~~~LS~ 155 (257)
T PRK10619 145 ---------------------------------------------------------------------AQGKYPVHLSG 155 (257)
T ss_pred ---------------------------------------------------------------------hhhCCcccCCH
Confidence 11223456899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhc
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERG 378 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~ 378 (541)
|++|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+.+... .
T Consensus 156 G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tiiivsH~~~~~~-~ 217 (257)
T PRK10619 156 GQQQRVSIARALAM------EPEVLLFDEPTSALDPELVG-----------EVLRIMQQLAEEGKTMVVVTHEMGFAR-H 217 (257)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-H
Confidence 99999999999999 99999999998887766553 666777766656889999999877543 3
Q ss_pred ccceeEEEc
Q psy91 379 VKLRLTVVD 387 (541)
Q Consensus 379 l~~rvnvIp 387 (541)
++.++.++.
T Consensus 218 ~~d~i~~l~ 226 (257)
T PRK10619 218 VSSHVIFLH 226 (257)
T ss_pred hcCEEEEEE
Confidence 556666653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-22 Score=217.11 Aligned_cols=199 Identities=20% Similarity=0.197 Sum_probs=146.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
+.+.++|++++|+++.+|+++||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+ ..... .
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~i----~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT---INNINY----NKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEE---ECCEEC----CCCCHHH
Confidence 4689999999999889999999999 9999999999999999955 46789999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc----ch---hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE----QV---HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~----~~---~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
..++.++||+|+..+++.+ ||.+|+.++.... +. ...+..+++..+++.+|+.+
T Consensus 77 ~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------- 137 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDEL------TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV------------- 137 (510)
T ss_pred HHHCCeEEEeecccccCCC------cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------------
Confidence 1234699999999999999 9999998763211 10 11222334555555555532
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..++.+..+|+|++
T Consensus 138 ------------------------------------------------------------------~~~~~~~~LSgG~~ 151 (510)
T PRK09700 138 ------------------------------------------------------------------DLDEKVANLSISHK 151 (510)
T ss_pred ------------------------------------------------------------------CcccchhhCCHHHH
Confidence 22345567999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+.+.++++.+|+++... .++.
T Consensus 152 qrv~ia~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tiiivsHd~~~~~-~~~d 213 (510)
T PRK09700 152 QMLEIAKTLML------DAKVIIMDEPTSSLTNKEVD-----------YLFLIMNQLRKEGTAIVYISHKLAEIR-RICD 213 (510)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCC
Confidence 99999999998 99999999998886665543 666677766555789999999977544 3455
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 214 ~v~~l 218 (510)
T PRK09700 214 RYTVM 218 (510)
T ss_pred EEEEE
Confidence 55555
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-22 Score=196.11 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=141.8
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc-c
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR-G 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~-~ 149 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ...... .
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL---FGGTDL----TGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---ECCeec----CCCCHHHH
Confidence 478999999998888999999999 9999999999999999955 47889999 888722 111111 1
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccc--------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.+..++|++|+..+++.+ |+.+|+.++..... ........++..+++.+|+.+
T Consensus 75 ~~~~i~~~~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 135 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENL------TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD------------- 135 (242)
T ss_pred HhcCeeEeccccccCCCC------CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-------------
Confidence 234699999999999999 99999987521100 011122334445555554432
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..+..+..+|+|++
T Consensus 136 ------------------------------------------------------------------~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 136 ------------------------------------------------------------------EADRLAGLLSHGQK 149 (242)
T ss_pred ------------------------------------------------------------------hhcCChhhCCHHHH
Confidence 11234556899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++++|||..|-+..... .+.++|.+..+ ++++++.+|+.+... .+..
T Consensus 150 qrv~laral~~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sH~~~~~~-~~~d 210 (242)
T TIGR03411 150 QWLEIGMLLMQ------DPKLLLLDEPVAGMTDEETE-----------KTAELLKSLAG-KHSVVVVEHDMEFVR-SIAD 210 (242)
T ss_pred HHHHHHHHHhc------CCCEEEecCCccCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEECCHHHHH-HhCC
Confidence 99999999998 99999999998887665543 56666666554 578999999887543 2445
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 211 ~i~~l 215 (242)
T TIGR03411 211 KVTVL 215 (242)
T ss_pred EEEEE
Confidence 55555
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-22 Score=199.71 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=143.5
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.-.|.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ ......
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW---LDGEHI----QHYASK 77 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE---ECCEEh----hhCCHH
Confidence 34689999999999889999999998 9999999999999999955 46789999 888732 221122
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.+++.++|++|+..+++.+ |+.+|+.++..+.. .........+..+++.+|+.+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 135 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDI------TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---------------- 135 (265)
T ss_pred HHhhheEEeeccCcCCCCC------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----------------
Confidence 2345699999999888888 99999877522110 001112233445555555432
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.++.+..+|+|++|++
T Consensus 136 ---------------------------------------------------------------~~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 136 ---------------------------------------------------------------LADQSVDTLSGGQRQRA 152 (265)
T ss_pred ---------------------------------------------------------------HhcCCcccCChHHHHHH
Confidence 12334567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ .+.++++.+|+.+... .+..++
T Consensus 153 ~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~L~~l~~~~~~tiii~tH~~~~~~-~~~d~i 214 (265)
T PRK10253 153 WIAMVLAQ------ETAIMLLDEPTTWLDISHQI-----------DLLELLSELNREKGYTLAAVLHDLNQAC-RYASHL 214 (265)
T ss_pred HHHHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEE
Confidence 99999998 99999999998886655443 56666666654 3778999999987432 345555
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 215 ~~l 217 (265)
T PRK10253 215 IAL 217 (265)
T ss_pred EEE
Confidence 555
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-22 Score=197.76 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=142.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCC-----CCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDL-----YGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~-----~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
++++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+. +|+|. ++|..+.. . ...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~---~~g~~~~~-~-~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL---FDGQDIYD-K-KID 76 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEE---ECCEEccc-c-ccc
Confidence 67899999999888999999999 9999999999999999955 444 89999 88873211 0 011
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++|++|+..+++ . |+.+|+.++....+ ....+..+.+..+++.+|+.....
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------------- 135 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-M------SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------------- 135 (247)
T ss_pred hHHHHhheEEEecCcccCC-C------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh--------------
Confidence 1233457999999988887 8 99999987521111 122333445666777777642000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+ ..+..+..+|+|++|++.
T Consensus 136 ------------------------------------------------------------~-~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 136 ------------------------------------------------------------D-RLHDSALGLSGGQQQRLC 154 (247)
T ss_pred ------------------------------------------------------------h-HhhCCcccCCHHHHHHHH
Confidence 0 112345578999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ +.++++.+|+.+... .+..++.+
T Consensus 155 laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiivsH~~~~~~-~~~d~i~~ 215 (247)
T TIGR00972 155 IARALAV------EPEVLLLDEPTSALDPIATG-----------KIEELIQELKK-KYTIVIVTHNMQQAA-RISDRTAF 215 (247)
T ss_pred HHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-cCeEEEEecCHHHHH-HhCCEEEE
Confidence 9999998 99999999998876655443 56666666544 378899999887432 34456655
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 216 l~ 217 (247)
T TIGR00972 216 FY 217 (247)
T ss_pred EE
Confidence 53
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-22 Score=192.29 Aligned_cols=193 Identities=17% Similarity=0.207 Sum_probs=138.4
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|++++|+++. .++||+| +|+|||||||||||++|++ .+.+|+|. ++|..+ .... ..+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~---~~g~~~----~~~~--~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL---INGVDV----TAAP--PAD 69 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEc----CcCC--HhH
Confidence 46889999998654 3999998 9999999999999999955 46789999 888732 1111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.++............+.+..+++.+|+.+
T Consensus 70 ~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 120 (211)
T cd03298 70 RPVSMLFQENNLFAHL------TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG----------------------- 120 (211)
T ss_pred ccEEEEecccccCCCC------cHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-----------------------
Confidence 5799999999999888 99999987632111111122334556666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 121 --------------------------------------------------------~~~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 121 --------------------------------------------------------LEKRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred --------------------------------------------------------HHhCCcccCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 145 ~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 202 (211)
T cd03298 145 R------DKPVLLLDEPFAALDPALRA-----------EMLDLVLDLHAETKMTVLMVTHQPEDAK-RLAQRVVFL 202 (211)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-hhhCEEEEE
Confidence 8 99999999998887665553 66677776654 3788999999877543 234455544
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-22 Score=201.21 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=140.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+. .........+
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~--~~~~~~~~~~ 76 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL---WQGKPLD--YSKRGLLALR 76 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEE---ECCEEcc--cccCCHHHHH
Confidence 67899999999888999999999 9999999999999999955 57789999 8887321 0111112234
Q ss_pred ccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++||+|+..+ +... ++.+|+.++....+....+..+.+..+++.+|+.+
T Consensus 77 ~~i~~v~q~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (271)
T PRK13638 77 QQVATVFQDPEQQIFYT------DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH---------------------- 128 (271)
T ss_pred hheEEEeeChhhccccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh----------------------
Confidence 579999998653 2334 67788876411111222233344555666666532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 129 ---------------------------------------------------------FRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred ---------------------------------------------------------HhcCCchhCCHHHHHHHHHHHHH
Confidence 11223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 152 ~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tii~vtH~~~~~~-~~~d~i~~l 209 (271)
T PRK13638 152 VL------QARYLLLDEPTAGLDPAGRT-----------QMIAIIRRIVAQGNHVIISSHDIDLIY-EISDAVYVL 209 (271)
T ss_pred Hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99 99999999998886655543 666777766555788999999887543 345566555
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-22 Score=187.88 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=155.3
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+.+||+++..++.+|++|||++ ||+|||||||||||+.|.| .|.+|++. ++|. ..+..+.....
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~---~~g~----~l~~~~~~~lA 74 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT---LNGV----PLNSWPPEELA 74 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEe---eCCc----ChhhCCHHHHH
Confidence 67889999999999999999998 9999999999999999955 46789999 8888 55555555666
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhH--hHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRK--SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~--e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+..++++|+..+-+.+ ||.|.|.||+.|.+...+ +..+.+..+|+.+++.++
T Consensus 75 ~~raVlpQ~s~laFpF------tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~l-------------------- 128 (259)
T COG4559 75 RHRAVLPQNSSLAFPF------TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL-------------------- 128 (259)
T ss_pred HHhhhcccCcccccce------EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhh--------------------
Confidence 7789999999998889 999999999988755443 455567888888888763
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+....+|||++|||.+++.
T Consensus 129 -----------------------------------------------------------a~R~y~~LSGGEqQRVqlARv 149 (259)
T COG4559 129 -----------------------------------------------------------AGRDYRTLSGGEQQRVQLARV 149 (259)
T ss_pred -----------------------------------------------------------hccchhhcCchHHHHHHHHHH
Confidence 223345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+..+-.-.-..+.+++|||+.-.++.... ...+...+..+.+-.++...||+.+...
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~-----------~tl~laR~la~~g~~V~~VLHDLNLAA~ 206 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQH-----------HTLRLARQLAREGGAVLAVLHDLNLAAQ 206 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHH-----------HHHHHHHHHHhcCCcEEEEEccchHHHH
Confidence 87765444345899999997766655543 4566677777778788889999987753
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-22 Score=200.89 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=143.9
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++|++++|+ .+.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .......
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL---IRGEPI----TKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEC----CcCCHHH
Confidence 478999999995 467999999999 9999999999999999955 57789999 888732 2112223
Q ss_pred ccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+..++||+|+.. .+... |+.+|+.++............+++..+++.+|+..
T Consensus 76 ~~~~i~~v~q~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------- 129 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSP------TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-------------------- 129 (277)
T ss_pred HHhheEEEecCcccccccc------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh--------------------
Confidence 4457899999963 23356 99999987532222233333445666666666643
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..++.+..+|+|++|++.|++
T Consensus 130 -----------------------------------------------------------~~~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 130 -----------------------------------------------------------LRDRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred -----------------------------------------------------------HhcCCcccCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++.... +..++.++
T Consensus 151 aL~~------~p~llilDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tvli~tH~~~~~~~-~~drv~~l 211 (277)
T PRK13652 151 VIAM------EPQVLVLDEPTAGLDPQGVK-----------ELIDFLNDLPETYGMTVIFSTHQLDLVPE-MADYIYVM 211 (277)
T ss_pred HHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHHH-hCCEEEEE
Confidence 9999 99999999998887665543 677778777654 7899999999875432 45565555
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-22 Score=200.88 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=146.2
Q ss_pred CCceeeecccccccc------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc
Q psy91 77 RDYIGFATLPEQVHR------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~ 142 (541)
.+.+.++|++++|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---i~g~~i~--- 75 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY---VDGLDTS--- 75 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEecc---
Confidence 456899999999963 56999999998 9999999999999999955 47789999 8887321
Q ss_pred cccccccccccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.+||++|++.. +... ++.+|+.|+....+....+..+.+..+++.+|+..
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~------~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------- 136 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVAT------IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE------------- 136 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccc------cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-------------
Confidence 111112335679999998642 2234 78899987632222333344455666777766643
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+.++.+..+|+|++
T Consensus 137 ------------------------------------------------------------------~~~~~~~~LS~G~~ 150 (280)
T PRK13633 137 ------------------------------------------------------------------YRRHAPHLLSGGQK 150 (280)
T ss_pred ------------------------------------------------------------------HhhCCcccCCHHHH
Confidence 12234567899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+++... . .
T Consensus 151 qrv~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tillvtH~~~~~~-~-~ 211 (280)
T PRK13633 151 QRVAIAGILAM------RPECIIFDEPTAMLDPSGRR-----------EVVNTIKELNKKYGITIILITHYMEEAV-E-A 211 (280)
T ss_pred HHHHHHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecChHHHh-c-C
Confidence 99999999999 99999999998887765553 66777777655 4889999999988654 3 6
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 212 d~v~~l~ 218 (280)
T PRK13633 212 DRIIVMD 218 (280)
T ss_pred CEEEEEE
Confidence 6666663
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-22 Score=215.65 Aligned_cols=198 Identities=20% Similarity=0.218 Sum_probs=148.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+.++|++++|+++.+|+++||+| ||+|||||||||||++|+| .+..|+|. ++|..+ .....
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE---IGGNPC----ARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCCH
Confidence 445799999999999889999999999 9999999999999999955 46789999 888732 11111
Q ss_pred -ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 -RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 -~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..++..+|||+|+..+++.+ ||.||+.++... .....+++..+++.+|+..
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~------------------ 132 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFPNL------SVKENILFGLPK----RQASMQKMKQLLAALGCQL------------------ 132 (510)
T ss_pred HHHHhCCEEEEeccCccCCCC------cHHHHhhccccc----chHHHHHHHHHHHHcCCCc------------------
Confidence 11234699999999999999 999999886311 1222344555666665532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LSgG~~qrv~l 151 (510)
T PRK15439 133 -------------------------------------------------------------DLDSSAGSLEVADRQIVEI 151 (510)
T ss_pred -------------------------------------------------------------cccCChhhCCHHHHHHHHH
Confidence 1233456789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|.+..... .+.++|.+..+.+.++++.+|+.+... .++.++.++
T Consensus 152 a~aL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiiivtHd~~~~~-~~~d~i~~l 213 (510)
T PRK15439 152 LRGLMR------DSRILILDEPTASLTPAETE-----------RLFSRIRELLAQGVGIVFISHKLPEIR-QLADRISVM 213 (510)
T ss_pred HHHHHc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999998886655543 566667666556789999999987543 355566655
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 214 ~ 214 (510)
T PRK15439 214 R 214 (510)
T ss_pred E
Confidence 3
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-22 Score=205.06 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=147.4
Q ss_pred Cceeeecccccccc----------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccce
Q psy91 78 DYIGFATLPEQVHR----------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTV 139 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~ 139 (541)
+.|+++||++.|+. ..+|+||||+| ||+|+||||||||+++|++ .+.+|+|. ++|..+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~---~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY---YQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEE---ECCEEcC
Confidence 46899999999962 46999999999 9999999999999999954 56789999 8887432
Q ss_pred ecccccccccccccEEEEeCCC--ccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 140 IEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 140 ~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
. ......+.+++.++||+|+. .+.|.+ ++.+++..+... ....+.+..+++.++++.+|+...
T Consensus 81 ~-~~~~~~~~~r~~i~~v~Q~~~~~l~p~~------~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 146 (327)
T PRK11308 81 K-ADPEAQKLLRQKIQIVFQNPYGSLNPRK------KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------- 146 (327)
T ss_pred c-CCHHHHHHHhCCEEEEEcCchhhcCCcc------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH-------
Confidence 1 11111123345799999997 688888 998887654111 122334455567777777776320
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
..++++..+
T Consensus 147 -----------------------------------------------------------------------~~~~~p~~L 155 (327)
T PRK11308 147 -----------------------------------------------------------------------HYDRYPHMF 155 (327)
T ss_pred -----------------------------------------------------------------------HhcCCCccC
Confidence 112345679
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +++++|+|||+.+.+..... ++.+.|.+..+ .+.++++.+|++...
T Consensus 156 SgGq~QRv~iArAL~~------~P~lLilDEPts~LD~~~~~-----------~i~~lL~~l~~~~g~til~iTHdl~~~ 218 (327)
T PRK11308 156 SGGQRQRIAIARALML------DPDVVVADEPVSALDVSVQA-----------QVLNLMMDLQQELGLSYVFISHDLSVV 218 (327)
T ss_pred CHHHHHHHHHHHHHHc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999999999999 99999999998876655443 67777777655 478999999998755
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. ++..++.++
T Consensus 219 ~-~~adrv~vm 228 (327)
T PRK11308 219 E-HIADEVMVM 228 (327)
T ss_pred H-HhCCEEEEE
Confidence 3 355566555
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-22 Score=198.68 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=143.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC--C---CCCeeecccCCccceecc-cc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--L---YGDRKVPNVNGSNTVIEV-AG 144 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~---~G~i~~~~~~G~~~~~~~-~~ 144 (541)
.+.+.++||++.|+++.+|+++||++ +|+|||||||||||++|+|.. . +|+|+ ++|..+.... ..
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~---~~g~~~~~~~~~~ 78 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE---LLGRTVQREGRLA 78 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEE---ECCEecccccccc
Confidence 45789999999999889999999999 999999999999999996643 2 48999 8887321100 00
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceecccccc--------chhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--------QVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--------~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
......++.++|++|+..+++.+ |+.+|+.++.... ..........+..+++.+|+.+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 144 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRL------SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-------- 144 (262)
T ss_pred hhHHHHHhheEEEccccccccCC------cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH--------
Confidence 01122345689999999999888 9999998752110 0001112233444455444422
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
+.++.+..+
T Consensus 145 -----------------------------------------------------------------------~~~~~~~~L 153 (262)
T PRK09984 145 -----------------------------------------------------------------------FAHQRVSTL 153 (262)
T ss_pred -----------------------------------------------------------------------HHhCCcccc
Confidence 123345678
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +|+++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+..
T Consensus 154 S~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tvii~tH~~~~~ 216 (262)
T PRK09984 154 SGGQQQRVAIARALMQ------QAKVILADEPIASLDPESAR-----------IVMDTLRDINQNDGITVVVTLHQVDYA 216 (262)
T ss_pred CHHHHHHHHHHHHHhc------CCCEEEecCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999998 99999999998887665543 66677776654 478999999998753
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. .++.++.++
T Consensus 217 ~-~~~d~i~~l 226 (262)
T PRK09984 217 L-RYCERIVAL 226 (262)
T ss_pred H-HhCCEEEEE
Confidence 2 244555554
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-22 Score=191.94 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=138.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
++++++++.|+++.+|+++||+| +|+||||||||||+++|++ .+.+|+|. ++|..+. ... ...+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~---~~g~~~~----~~~-~~~~ 73 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL---WQGEPIR----RQR-DEYH 73 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEcc----cch-HHhh
Confidence 67899999999888999999999 9999999999999999955 57789999 8887321 111 1234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.+...... ....+.+..+++.+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~------tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~----------------------- 121 (204)
T PRK13538 74 QDLLYLGHQPGIKTEL------TALENLRFYQRLHG---PGDDEALWEALAQVGLAG----------------------- 121 (204)
T ss_pred hheEEeCCccccCcCC------cHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHH-----------------------
Confidence 5789999999999888 99999987521111 012234555666666542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 122 --------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 122 --------------------------------------------------------FEDVPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred --------------------------------------------------------HhhCChhhcCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+....
T Consensus 146 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 146 T------RAPLWILDEPFTAIDKQGVA-----------RLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred c------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9 99999999998776655443 5666666665557889999998775543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-22 Score=197.52 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=141.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
..+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL---LRGQHI----EGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEE---ECCEEC----CCCCHHH
Confidence 3589999999999889999999999 9999999999999999955 57789999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchh---------------hHhHhhhHHHHHHHhCCCCccchh
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH---------------RKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~---------------~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
..+..++|++|+..+++.+ |+.+|+.++....... ..+....+..
T Consensus 77 ~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 136 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREM------TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT-------------- 136 (255)
T ss_pred HHhcCeEEeccCcccCCCC------cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH--------------
Confidence 1234589999999999999 9999998762110000 0000011111
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
++..+...+ ..+..+
T Consensus 137 ----------------------------------------------------------------~l~~~gl~~-~~~~~~ 151 (255)
T PRK11300 137 ----------------------------------------------------------------WLERVGLLE-HANRQA 151 (255)
T ss_pred ----------------------------------------------------------------HHHhCChhh-hhhCCh
Confidence 222222222 234556
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSM 372 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~ 372 (541)
..+|+|++|++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+. +.++++.+|+.
T Consensus 152 ~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVT------QPEILMLDEPAAGLNPKETK-----------ELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHhc------CCCEEEEcCCccCCCHHHHH-----------HHHHHHHHHHhhcCCEEEEEeCCH
Confidence 7799999999999999999 99999999998887665543 666777766554 78899999987
Q ss_pred hhhhhcccceeEEEc
Q psy91 373 DIEERGVKLRLTVVD 387 (541)
Q Consensus 373 di~~~~l~~rvnvIp 387 (541)
+... .++.++.++.
T Consensus 215 ~~~~-~~~d~i~~l~ 228 (255)
T PRK11300 215 KLVM-GISDRIYVVN 228 (255)
T ss_pred HHHH-HhCCEEEEEE
Confidence 7543 3555666653
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-22 Score=200.62 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=145.6
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
..+.++||++.|++ ..+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ ....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~i----~~~~ 75 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK---IDGELL----TAEN 75 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE---ECCEEC----CcCC
Confidence 46899999999974 34999999999 9999999999999999944 57789999 888732 2212
Q ss_pred cccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.+||++|++. +++.. |+.+|+.++.........+..+++..+++.+|+.+.
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------- 133 (277)
T PRK13642 76 VWNLRRKIGMVFQNPDNQFVGA------TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF---------------- 133 (277)
T ss_pred HHHHhcceEEEEECHHHhhccC------CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH----------------
Confidence 2234567999999974 56677 999999875221122233334456666666666431
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
.+..+..+|+|++|++.
T Consensus 134 ---------------------------------------------------------------~~~~~~~LS~G~~qrv~ 150 (277)
T PRK13642 134 ---------------------------------------------------------------KTREPARLSGGQKQRVA 150 (277)
T ss_pred ---------------------------------------------------------------hhCCcccCCHHHHHHHH
Confidence 12234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|-+..... .+.+.|.+..+. +.++++.+|+++... ...++.
T Consensus 151 lAraL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~ 211 (277)
T PRK13642 151 VAGIIAL------RPEIIILDESTSMLDPTGRQ-----------EIMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRIL 211 (277)
T ss_pred HHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEE
Confidence 9999999 99999999998876655543 666777766654 889999999988764 356666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 212 ~l~ 214 (277)
T PRK13642 212 VMK 214 (277)
T ss_pred EEE
Confidence 653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-22 Score=199.45 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=142.9
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++|+++.|++ +.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .....
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~----~~~~~ 78 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF---YNNQAI----TDDNF 78 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEC----CcCCH
Confidence 46899999999975 45999999999 9999999999999999955 46789999 888732 22122
Q ss_pred ccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.++|++|+.. +++.. ++.+|+.++............+.+..+++.+|+.+
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 134 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGS------IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE------------------ 134 (269)
T ss_pred HHHHhheeEEEeChHHhcccc------cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 233457999999974 66667 88888877622111222223334555566655532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..+..+..+|+|++|++.|
T Consensus 135 -------------------------------------------------------------~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 135 -------------------------------------------------------------RADYEPNALSGGQKQRVAI 153 (269)
T ss_pred -------------------------------------------------------------hhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..+.. .+.++|.+..+. +.++++.+|+.+... . ..++.+
T Consensus 154 aral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~ 214 (269)
T PRK13648 154 AGVLAL------NPSVIILDEATSMLDPDARQ-----------NLLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIV 214 (269)
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEE
Confidence 999999 99999999998886655543 666777766543 788999999987654 3 566666
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 215 l 215 (269)
T PRK13648 215 M 215 (269)
T ss_pred E
Confidence 5
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-22 Score=197.72 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=143.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc---------
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV--------- 142 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~--------- 142 (541)
|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+....
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ---VEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEcccccccccccccc
Confidence 46889999999888999999999 9999999999999999955 56789999 8887331100
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++|++|+..+++.. |+.+|+.++.. ............+.++++.+|+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------- 138 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHK------TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD------------- 138 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCC------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-------------
Confidence 0000112345799999999999888 99999987521 111122222334455555555432
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..+..+..+|+|++
T Consensus 139 ------------------------------------------------------------------~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 139 ------------------------------------------------------------------KADHMPAQLSGGQQ 152 (252)
T ss_pred ------------------------------------------------------------------HhhcChhhcCHHHH
Confidence 11223456899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+.+... .+.
T Consensus 153 qrv~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tiiivsH~~~~~~-~~~ 214 (252)
T TIGR03005 153 QRVAIARALAM------RPKVMLFDEVTSALDPELVG-----------EVLNVIRRLASEHDLTMLLVTHEMGFAR-EFA 214 (252)
T ss_pred HHHHHHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEeCCHHHHH-Hhc
Confidence 99999999998 99999999998876655443 666777766553 788999999887542 344
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 215 d~i~~l~ 221 (252)
T TIGR03005 215 DRVCFFD 221 (252)
T ss_pred CEEEEEE
Confidence 5665553
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-22 Score=196.16 Aligned_cols=202 Identities=17% Similarity=0.154 Sum_probs=141.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec--ccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE--VAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~--~~~~~~~ 148 (541)
.+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+... .......
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN---IAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEecccccccchhhHH
Confidence 378899999999889999999999 9999999999999999955 46789999 888732100 0001112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.++|++|+..+++.+ |+.||+.+.... .+....+....+..+++.+|+..
T Consensus 79 ~~~~~i~~~~q~~~~~~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------------- 133 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHL------TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP------------------- 133 (242)
T ss_pred HHHhheEEEecCccccCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------------------
Confidence 2345799999999999888 999998653111 11112222334445555555432
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.+..+..+|+|++|++.|+
T Consensus 134 ------------------------------------------------------------~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 134 ------------------------------------------------------------YADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 12233456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..+.. .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 154 ral~~------~p~llilDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sh~~~~~~-~~~d~i~~l 214 (242)
T PRK11124 154 RALMM------EPQVLLFDEPTAALDPEITA-----------QIVSIIRELAETGITQVIVTHEVEVAR-KTASRVVYM 214 (242)
T ss_pred HHHhc------CCCEEEEcCCCCcCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998 99999999998876655443 566666666555788999999877543 234455544
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-22 Score=204.82 Aligned_cols=204 Identities=13% Similarity=0.092 Sum_probs=146.8
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceecc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~~ 142 (541)
.++++||++.|+. ..+|+||||+| ||+||||||||||+++|++. +++|+|. ++|+.+.. .
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~---~~G~~i~~-~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE---FNGQDLQR-I 78 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE---ECCEECCc-C
Confidence 4789999999976 46999999999 99999999999999999553 2579999 88874321 1
Q ss_pred cccc-cccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 143 AGTK-VRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 143 ~~~~-~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.... .+.+++.++||+|+. .+.|.+ ++.+++..... ..+..+.+..+++.++++.+|+.....
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~------~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~------- 145 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCY------TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS------- 145 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH-------
Confidence 1111 112335799999997 578888 88776654311 112233445567778888888753100
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
..++++..+|+
T Consensus 146 ---------------------------------------------------------------------~l~~~p~~LSg 156 (326)
T PRK11022 146 ---------------------------------------------------------------------RLDVYPHQLSG 156 (326)
T ss_pred ---------------------------------------------------------------------HHhCCchhCCH
Confidence 11234567999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~ 377 (541)
|++|++.|+++++. +++++|+|||..|.+..... ++.++|.+..+ .+.++++.+|+++...
T Consensus 157 Gq~QRv~iArAL~~------~P~llilDEPts~LD~~~~~-----------~il~lL~~l~~~~g~til~iTHdl~~~~- 218 (326)
T PRK11022 157 GMSQRVMIAMAIAC------RPKLLIADEPTTALDVTIQA-----------QIIELLLELQQKENMALVLITHDLALVA- 218 (326)
T ss_pred HHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-
Confidence 99999999999998 99999999998876655543 67777777755 4789999999988543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.+..++.++
T Consensus 219 ~~adri~vm 227 (326)
T PRK11022 219 EAAHKIIVM 227 (326)
T ss_pred HhCCEEEEE
Confidence 356666665
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-22 Score=194.12 Aligned_cols=201 Identities=18% Similarity=0.198 Sum_probs=137.7
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++||+++|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII---FDGKDLLK-LSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-cchhhH
Confidence 6789999999865 7999999999 9999999999999999955 47889999 88873211 110001
Q ss_pred ccccccEEEEeCCC--ccccccccccCCCcccceeccccccchh-hHhHhhh-HHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 RGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKG-FDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~-v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
..+++.++|++|+. .+++.+ |+++|+.++....... ....... +..+++.+|+..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------- 136 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRM------TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE--------------- 136 (228)
T ss_pred HHhhccEEEEecCchhhcCCcC------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh---------------
Confidence 23455799999997 466778 9999987652111100 1111111 123344433310
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.+.+..+..+|+|++|+
T Consensus 137 ---------------------------------------------------------------~~~~~~~~~LS~G~~qr 153 (228)
T cd03257 137 ---------------------------------------------------------------EVLNRYPHELSGGQRQR 153 (228)
T ss_pred ---------------------------------------------------------------hHhhCCchhcCHHHHHH
Confidence 01223455689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.+.+.+..+. ++++++.+|+.+... .+..+
T Consensus 154 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~ 215 (228)
T cd03257 154 VAIARALAL------NPKLLIADEPTSALDVSVQA-----------QILDLLKKLQEELGLTLLFITHDLGVVA-KIADR 215 (228)
T ss_pred HHHHHHHhc------CCCEEEecCCCCCCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCe
Confidence 999999998 99999999998886655443 666777766554 789999999987443 34455
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 216 i~~l 219 (228)
T cd03257 216 VAVM 219 (228)
T ss_pred EEEE
Confidence 5555
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-22 Score=195.59 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=142.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-----CCCCCeeecccCCccceeccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-----DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-----~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.|.++|+++.|+++.+|+++||++ +|+||||||||||+++|+|. +..|+|. ++|+.+ .....
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~---~~g~~i----~~~~~ 74 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE---IEGKDV----KNQDV 74 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE---ECCEec----ccCCH
Confidence 367899999999888999999999 99999999999999999664 4789999 888733 21112
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
...++.++|++|+..+++ . |+.+|+.++....+. ......+++..+++.+|+...
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------- 131 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-K------SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE---------------- 131 (246)
T ss_pred HHHhhhEEEEecCCcccc-c------cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChh----------------
Confidence 233457999999988875 7 999999876211111 112233345566666666320
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+.. ..+..+..+|+|++|++.
T Consensus 132 -----------------------------------------------------~~~------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 132 -----------------------------------------------------VKD------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred -----------------------------------------------------hhH------HhcCCcccCCHHHHHHHH
Confidence 000 012234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+ +.++++.+|+.+... .+..++.+
T Consensus 153 laral~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~~~-~~~d~i~~ 213 (246)
T PRK14269 153 IARALAI------KPKLLLLDEPTSALDPISSG-----------VIEELLKELSH-NLSMIMVTHNMQQGK-RVADYTAF 213 (246)
T ss_pred HHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhC-CCEEEEEecCHHHHH-hhCcEEEE
Confidence 9999999 99999999998887665443 56666666544 788999999877443 34455555
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 214 l 214 (246)
T PRK14269 214 F 214 (246)
T ss_pred E
Confidence 5
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-22 Score=218.34 Aligned_cols=176 Identities=23% Similarity=0.285 Sum_probs=142.8
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCC-----CCeeecccCCccceecccccccccccccEEEEeC
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLY-----GDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~-----G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
.+.+|+|||+.+ ||+|||||||||||++|+++... |+|+ ++|+ ....+..++.+|||.|
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il---vNG~-------~~~~~~~~~~s~yV~Q 111 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL---LNGR-------PRDSRSFRKISGYVQQ 111 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE---ECCc-------cCchhhhhheeEEEcc
Confidence 478999999998 99999999999999999776554 4444 4443 1223345677899999
Q ss_pred CCccccccccccCCCcccceecc---ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFA---TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG 236 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~---~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~ 236 (541)
++.++|++ ||+|++.|. +++...+++++.+++++++..+||..++++.+++..
T Consensus 112 dD~l~~~L------TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~------------------ 167 (613)
T KOG0061|consen 112 DDVLLPTL------TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPG------------------ 167 (613)
T ss_pred cccccccc------cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCC------------------
Confidence 99999999 999999987 667777888999999999999999988777554211
Q ss_pred CCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec
Q psy91 237 SIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316 (541)
Q Consensus 237 ~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~ 316 (541)
...+|+|+++|++|+..++.
T Consensus 168 --------------------------------------------------------~rgiSGGErkRvsia~Ell~---- 187 (613)
T KOG0061|consen 168 --------------------------------------------------------IRGLSGGERKRVSIALELLT---- 187 (613)
T ss_pred --------------------------------------------------------CCccccchhhHHHHHHHHHc----
Confidence 12478999999999999988
Q ss_pred CeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 317 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 317 gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
+|.++++|||+.|.+..... +..+.|++..+.||++++..|...
T Consensus 188 --~P~iLflDEPTSGLDS~sA~-----------~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 188 --DPSILFLDEPTSGLDSFSAL-----------QVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred --CCCEEEecCCCCCcchhhHH-----------HHHHHHHHHHhCCCEEEEEEeCCc
Confidence 99999999998886544443 788899999888999998887643
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-22 Score=192.93 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=142.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~ 77 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL---FEGEDI----STLKPE 77 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE---ECCEEc----CcCCHH
Confidence 45689999999999889999999999 9999999999999999955 57889999 888622 111112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.++|++|+..+++ . |+.+|+.+....... ....+.+..+++.+|+..
T Consensus 78 ~~~~~i~~~~q~~~l~~-~------tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~-------------------- 128 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFG-D------TVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPD-------------------- 128 (225)
T ss_pred HHHhccEEEeccccccc-c------cHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCCh--------------------
Confidence 23457899999987764 6 899998764111110 111223444555555421
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
...+..+..+|+|++|++.|++
T Consensus 129 ----------------------------------------------------------~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 129 ----------------------------------------------------------TILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred ----------------------------------------------------------HHhcCCcccCCHHHHHHHHHHH
Confidence 0112345678999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..... .+.++|.+..+ .+.++++.+|+.+... .+.++.+++
T Consensus 151 al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvii~sh~~~~~~--~~d~i~~l~ 211 (225)
T PRK10247 151 NLQF------MPKVLLLDEITSALDESNKH-----------NVNEIIHRYVREQNIAVLWVTHDKDEIN--HADKVITLQ 211 (225)
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECChHHHH--hCCEEEEEe
Confidence 9999 99999999998886655443 56666776654 3778999999988653 366777763
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-22 Score=196.40 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=141.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .......++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD---LAGVDL----HGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE---ECCEEc----ccCCHHHHh
Confidence 67899999999889999999999 9999999999999999955 46789999 888722 221222234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+.++|++|+..+++.+ |+.+|+.++.... . ....+..+++..+++.+|+.+
T Consensus 75 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 129 (256)
T TIGR03873 75 RRVALVEQDSDTAVPL------TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH------------------- 129 (256)
T ss_pred hheEEecccCccCCCC------CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-------------------
Confidence 4689999998777778 9999998752111 0 011112233444555554422
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..+..+..+|+|++|++.|+
T Consensus 130 ------------------------------------------------------------~~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 130 ------------------------------------------------------------LADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred ------------------------------------------------------------hhcCCcccCCHHHHHHHHHH
Confidence 12334557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|.+..... .+.+.|.+..+.+.++++.+|+++... .+..++.++
T Consensus 150 ~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 210 (256)
T TIGR03873 150 RALAQ------EPKLLLLDEPTNHLDVRAQL-----------ETLALVRELAATGVTVVAALHDLNLAA-SYCDHVVVL 210 (256)
T ss_pred HHHhc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887665543 566666665555788999999877543 345565555
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-22 Score=196.74 Aligned_cols=204 Identities=16% Similarity=0.126 Sum_probs=144.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..+.++|++++|+++.+|+++||+| ||+|||||||||||++|+|.. .+|+|. ++|..+.. ..
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~---~~g~~~~~--~~ 77 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL---LDGEDLYG--PG 77 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE---ECCEeccc--cc
Confidence 3689999999999889999999999 999999999999999996642 589999 88873211 00
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++.+ |+.+|+.++...... ......+.+..+++.+|+....
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------- 138 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTM------SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------------- 138 (258)
T ss_pred cChHHHhcceEEEccccccCCCC------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------------
Confidence 11123345799999999999888 999999875211111 2223334556666666653200
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.. ..+..+..+|+|++|+
T Consensus 139 -------------------------------------------------------------~~-~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 139 -------------------------------------------------------------KD-RLDKPGGGLSGGQQQR 156 (258)
T ss_pred -------------------------------------------------------------hh-HhhCCcccCCHHHHHH
Confidence 00 1123456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+... .+..++
T Consensus 157 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tviivsH~~~~~~-~~~d~i 217 (258)
T PRK14241 157 LCIARAIAV------EPDVLLMDEPCSALDPISTL-----------AIEDLINELKQ-DYTIVIVTHNMQQAA-RVSDQT 217 (258)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHHH-HhCCEE
Confidence 999999998 99999999998886655543 55666665533 578899999876432 345566
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 218 ~~l 220 (258)
T PRK14241 218 AFF 220 (258)
T ss_pred EEE
Confidence 665
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-22 Score=197.25 Aligned_cols=205 Identities=15% Similarity=0.127 Sum_probs=145.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|..+.. .
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---~~g~~i~~--~ 84 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS---IEGEDIYE--P 84 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE---ECCEEccc--c
Confidence 34689999999999888999999999 99999999999999999664 2689999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.......++.++|++|+..+++ + |+.+|+.++....+.......+.+..+++.+|+.+...
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------ 145 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-M------SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS------------ 145 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-c------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh------------
Confidence 1111123457999999988887 8 99999987621111222223344566666666532000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ..+..+..+|+|++|+
T Consensus 146 --------------------------------------------------------------~-~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 146 --------------------------------------------------------------D-RLKSPALSLSGGQQQR 162 (258)
T ss_pred --------------------------------------------------------------h-hhcCChhhCCHHHHHH
Confidence 0 1123345689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .++.++
T Consensus 163 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~-~~tiiivsH~~~~~~-~~~d~i 223 (258)
T PRK14268 163 LCIARTLAV------KPKIILFDEPTSALDPISTA-----------RIEDLIMNLKK-DYTIVIVTHNMQQAA-RISDYT 223 (258)
T ss_pred HHHHHHHHc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHhh-CCEEEEEECCHHHHH-HhCCEE
Confidence 999999998 99999999998887665553 55666666543 688899999877543 356666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 224 ~~l~ 227 (258)
T PRK14268 224 GFFL 227 (258)
T ss_pred EEEE
Confidence 6664
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-22 Score=195.81 Aligned_cols=197 Identities=13% Similarity=0.194 Sum_probs=140.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-cc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~ 149 (541)
.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~~~~~ 77 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV---FDGKDI----TDWQTAKI 77 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE---ECCEec----CCCCHHHH
Confidence 589999999999888999999999 9999999999999999955 56789999 888732 11111 12
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHh-CCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVV-GESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~v-GL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|+..+++.+ |+.+|+.++.... ......+.+..+++.+ ++.
T Consensus 78 ~~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--------------------- 128 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRM------TVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--------------------- 128 (237)
T ss_pred HHhCEEEeccCcccCCCC------cHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH---------------------
Confidence 345799999999998888 9999998763111 1111112222222222 110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+ ..+..+..+|+|++|++.|++
T Consensus 129 ---------------------------------------------------------~-~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 129 ---------------------------------------------------------E-RRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred ---------------------------------------------------------H-HHhCchhhCCHHHHHHHHHHH
Confidence 0 112245568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++.
T Consensus 151 al~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~ 211 (237)
T PRK11614 151 ALMS------QPRLLLLDEPSLGLAPIIIQ-----------QIFDTIEQLREQGMTIFLVEQNANQAL-KLADRGYVLE 211 (237)
T ss_pred HHHh------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCcHHHHH-hhCCEEEEEe
Confidence 9998 99999999998887655443 666777766556889999999876332 3556666653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-22 Score=194.76 Aligned_cols=195 Identities=18% Similarity=0.232 Sum_probs=140.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i----~~~~~~~~ 75 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL---IDGVDI----KTIDVIDL 75 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEh----hhcChHHh
Confidence 378999999998888999999999 9999999999999999955 47789999 888732 21112233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++ . |+.+|+.++..... ....++..+++.+|+..
T Consensus 76 ~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~---------------------- 122 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-G------TVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK---------------------- 122 (241)
T ss_pred hhcEEEEecCchhch-h------hHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH----------------------
Confidence 457999999987775 6 89999887522111 11223444555555421
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+.++.+..+|+|++|++.|++++
T Consensus 123 --------------------------------------------------------~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 123 --------------------------------------------------------EYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred --------------------------------------------------------HHhhCCcccCCHHHHHHHHHHHHH
Confidence 011234556899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|.+..+.. .+.++|.+..+ .++++++.+|+.+... .+..++.++.
T Consensus 147 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tii~~sH~~~~~~-~~~d~i~~l~ 206 (241)
T PRK14250 147 AN------NPEVLLLDEPTSALDPTSTE-----------IIEELIVKLKNKMNLTVIWITHNMEQAK-RIGDYTAFLN 206 (241)
T ss_pred hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeccHHHHH-HhCCEEEEEe
Confidence 98 99999999998887655443 56666666554 3789999999887432 3455665553
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-22 Score=189.19 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=129.6
Q ss_pred EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCccccee
Q psy91 103 MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIG 180 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~ 180 (541)
||-|+||||||||+|+| +.+|+.|.|. ++|+++.....+......++++||||||..||||+ ||+.|+.
T Consensus 28 AlFG~SGsGKTslin~IaGL~rPdeG~I~---lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~------tVrgNL~ 98 (352)
T COG4148 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIE---LNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY------TVRGNLR 98 (352)
T ss_pred EEecCCCCChhhHHHHHhccCCccccEEE---ECCEEeecccCCcccChhhheeeeEeeccccccce------EEecchh
Confidence 99999999999999999 5578899999 99996655444444455677899999999999999 9999999
Q ss_pred ccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhc
Q psy91 181 FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKG 260 (541)
Q Consensus 181 ~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g 260 (541)
|++... ....++.+.+++|+.+
T Consensus 99 YG~~~~------~~~~fd~iv~lLGI~h---------------------------------------------------- 120 (352)
T COG4148 99 YGMWKS------MRAQFDQLVALLGIEH---------------------------------------------------- 120 (352)
T ss_pred hhhccc------chHhHHHHHHHhCcHH----------------------------------------------------
Confidence 994322 2334666677777765
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhh
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEES 339 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~ 339 (541)
+.++.|..+|||++|+|+|.+++.. .|.|++.||| ...|.....
T Consensus 121 ---------------------------LL~R~P~~LSGGEkQRVAIGRALLt------~P~LLLmDEPLaSLD~~RK~-- 165 (352)
T COG4148 121 ---------------------------LLDRYPGTLSGGEKQRVAIGRALLT------APELLLMDEPLASLDLPRKR-- 165 (352)
T ss_pred ---------------------------HHhhCCCccCcchhhHHHHHHHHhc------CCCeeeecCchhhcccchhh--
Confidence 2345677899999999999999998 9999999999 666654443
Q ss_pred hhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 340 WRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 340 ~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|..| |+...+ .+..+..++|+++ +..|+..+|-+++
T Consensus 166 --Eilpy--------lERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le 203 (352)
T COG4148 166 --EILPY--------LERLRDEINIPILYVSHSLD-EVLRLADRVVVLE 203 (352)
T ss_pred --HHHHH--------HHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec
Confidence 24444 443332 2445677888876 3356777777664
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-22 Score=199.13 Aligned_cols=199 Identities=20% Similarity=0.222 Sum_probs=143.0
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.|+ .+.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+. .........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~~--~~~~~~~~~ 76 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL---IKGEPIK--YDKKSLLEV 76 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCEECc--cccchHHHH
Confidence 67899999996 467999999999 9999999999999999955 56789999 8887321 011111223
Q ss_pred cccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++.++|++|+.. .+... |+.+|+.++....+....+..+++..+++.+|+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--------------------- 129 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAP------TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG--------------------- 129 (275)
T ss_pred HhheEEEeeChhhhhccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch---------------------
Confidence 457999999963 33446 99999987632212223333445666666666643
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|++.|+++
T Consensus 130 ----------------------------------------------------------~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 130 ----------------------------------------------------------FENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred ----------------------------------------------------------hhcCChhhCCHHHHHHHHHHHH
Confidence 1223455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..+.. ++.++|.+..+.+.++++.+|+++... .++.++.++
T Consensus 152 l~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~~til~vtH~~~~~~-~~~d~i~~l 210 (275)
T PRK13639 152 LAM------KPEIIVLDEPTSGLDPMGAS-----------QIMKLLYDLNKEGITIIISTHDVDLVP-VYADKVYVM 210 (275)
T ss_pred Hhc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998 99999999998886655443 677777776656889999999987544 244555554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-22 Score=197.25 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=146.0
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceec
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~ 141 (541)
...+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|+ ++|+.+..
T Consensus 15 ~~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~---~~g~~i~~- 90 (267)
T PRK14235 15 ATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT---LDGEDIYD- 90 (267)
T ss_pred CCCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE---ECCEECcc-
Confidence 3456899999999999888999999999 99999999999999999653 2689999 88873211
Q ss_pred ccccccccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
. ......+++.++|++|+..+++ . |+.+|+.++...... ......+.+..+++.+|+.....
T Consensus 91 ~-~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------- 154 (267)
T PRK14235 91 P-RLDVVELRARVGMVFQKPNPFP-K------SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------- 154 (267)
T ss_pred c-ccchHHHhhceEEEecCCCCCC-C------cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh--------
Confidence 0 0111234457999999987765 5 899999876211111 12223345566677666632000
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
. ..+..+..+|+|
T Consensus 155 ------------------------------------------------------------------~-~~~~~~~~LSgG 167 (267)
T PRK14235 155 ------------------------------------------------------------------D-RLHEPGTGLSGG 167 (267)
T ss_pred ------------------------------------------------------------------H-HhhCCcccCCHH
Confidence 0 012235568999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l 379 (541)
++|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+++... .+
T Consensus 168 q~qrv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~l~~-~~tiiivtH~~~~~~-~~ 228 (267)
T PRK14235 168 QQQRLCIARAIAV------SPEVILMDEPCSALDPIATA-----------KVEELIDELRQ-NYTIVIVTHSMQQAA-RV 228 (267)
T ss_pred HHHHHHHHHHHHc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHhc-CCeEEEEEcCHHHHH-hh
Confidence 9999999999999 99999999998887665543 56666666544 578899999877543 35
Q ss_pred cceeEEEc
Q psy91 380 KLRLTVVD 387 (541)
Q Consensus 380 ~~rvnvIp 387 (541)
..++.++.
T Consensus 229 ~d~v~~l~ 236 (267)
T PRK14235 229 SQRTAFFH 236 (267)
T ss_pred CCEEEEEE
Confidence 55666654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-21 Score=196.24 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=144.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|..+.. .
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~---~~g~~~~~--~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL---LDGENILT--P 85 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE---ECCEEccc--c
Confidence 35689999999999888999999999 99999999999999999664 3579999 88873210 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++.... ........+++.++++.+|+....
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------ 146 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-M------SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV------------ 146 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-C------cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh------------
Confidence 1111233457999999988776 7 9999998762111 122233334566667766653200
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
.. ..+..+..+|+|++|
T Consensus 147 ---------------------------------------------------------~~------~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 147 ---------------------------------------------------------KD------KLHQSGYSLSGGQQQ 163 (260)
T ss_pred ---------------------------------------------------------HH------HHhcCCCCCCHHHHH
Confidence 00 112235568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+ +.++++.+|+.+... .+..+
T Consensus 164 rv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tiii~sH~~~~~~-~~~d~ 224 (260)
T PRK10744 164 RLCIARGIAI------RPEVLLLDEPCSALDPISTG-----------RIEELITELKQ-DYTVVIVTHNMQQAA-RCSDY 224 (260)
T ss_pred HHHHHHHHHC------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998886655443 55666665533 578889999876432 35556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 225 i~~l~ 229 (260)
T PRK10744 225 TAFMY 229 (260)
T ss_pred EEEEE
Confidence 66664
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-22 Score=204.84 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=138.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.+ ||+++|+++.+ ++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+............+
T Consensus 2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~---~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV---LNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccccccccccchhh
Confidence 455 88999987543 899998 9999999999999999955 46789999 8887331100001112234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++||+|+..+++++ ||.+|+.++.. ....+++.++++.+|+..
T Consensus 76 ~~i~~v~q~~~l~~~~------tv~enl~~~~~------~~~~~~~~~~l~~~gl~~----------------------- 120 (352)
T PRK11144 76 RRIGYVFQDARLFPHY------KVRGNLRYGMA------KSMVAQFDKIVALLGIEP----------------------- 120 (352)
T ss_pred CCEEEEcCCcccCCCC------cHHHHHHhhhh------hhhHHHHHHHHHHcCCch-----------------------
Confidence 6799999999999999 99999988621 112234555666665532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 121 --------------------------------------------------------~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 121 --------------------------------------------------------LLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred --------------------------------------------------------hhhCCcccCCHHHHHHHHHHHHHH
Confidence 123345678999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 145 ~------~p~llLLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tii~vTHd~~~~-~~~~d~i~~l~ 203 (352)
T PRK11144 145 T------APELLLMDEPLASLDLPRKR-----------ELLPYLERLAREINIPILYVSHSLDEI-LRLADRVVVLE 203 (352)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCeEEEEecCHHHH-HHhCCEEEEEe
Confidence 9 99999999997776554432 666677666554 78899999998633 34556666553
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-22 Score=199.22 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=139.3
Q ss_pred eeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.++||++.|++ +++|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+........
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~i~~~~~~~~ 79 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR---VDDTLITSTSKNKD 79 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccccccccC
Confidence 688999999974 36999999999 9999999999999999955 57789999 88873211000011
Q ss_pred cccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++|++|+.. .+... |+.+|+.++.........+..+.+..+++.+|+..
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------- 136 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLFEE------TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------------- 136 (280)
T ss_pred HHHHHhheEEEeeChhhhhccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-----------------
Confidence 1233457999999862 22236 99999987521111222233344555666665531
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
...+..+..+|+|++|++.
T Consensus 137 -------------------------------------------------------------~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 137 -------------------------------------------------------------SLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred -------------------------------------------------------------hhhhCCcccCCHHHHHHHH
Confidence 0112345568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+.++++++.+|+.+... .+..++.+
T Consensus 156 la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiiivsH~~~~~~-~~~d~i~~ 217 (280)
T PRK13649 156 IAGILAM------EPKILVLDEPTAGLDPKGRK-----------ELMTLFKKLHQSGMTIVLVTHLMDDVA-NYADFVYV 217 (280)
T ss_pred HHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeccHHHHH-HhCCEEEE
Confidence 9999998 99999999998886655443 566666665555789999999877432 34556555
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 218 l 218 (280)
T PRK13649 218 L 218 (280)
T ss_pred E
Confidence 5
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=193.95 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=146.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
...|.++|++++|+++.+|+|+||+| +|+|||||||||||++|+|.. .+|+|+ ++|..+.. .
T Consensus 2 ~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~i~~-~- 76 (252)
T PRK14256 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL---LDDTDIYD-R- 76 (252)
T ss_pred CcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE---ECCEEccc-c-
Confidence 45689999999999888999999999 999999999999999996652 479999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++.+ |+.+|+.++..... ....+..+++..+++.+|+.....
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 139 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAM------SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK----------- 139 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcC------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----------
Confidence 111123355799999999999888 99999987521111 122223344566666666542000
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
. ..+..+..+|+|++|
T Consensus 140 ----------------------------------------------------------~------~~~~~~~~LS~G~~q 155 (252)
T PRK14256 140 ----------------------------------------------------------D------RLKSNAMELSGGQQQ 155 (252)
T ss_pred ----------------------------------------------------------H------HhhCCcCcCCHHHHH
Confidence 0 011235568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. ++.++|.+..+ ++++++.+|+.+... .++.+
T Consensus 156 rl~laral~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tiiivsH~~~~~~-~~~d~ 216 (252)
T PRK14256 156 RLCIARTIAV------KPEVILMDEPASALDPISTL-----------KIEELIEELKE-KYTIIIVTHNMQQAA-RVSDY 216 (252)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHh-CCcEEEEECCHHHHH-hhCCE
Confidence 9999999998 99999999998887766553 56666666544 478899999877443 35566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 217 i~~l~ 221 (252)
T PRK14256 217 TAFFY 221 (252)
T ss_pred EEEEE
Confidence 66653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-21 Score=213.12 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=146.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~i~~---~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL---IDGQEMRF---ASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEECCC---CCHHHH
Confidence 4689999999999888999999999 9999999999999999955 46789999 88873211 111112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc--c-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--Q-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
+++.++||+|+..+++.+ ||.+|+.++.... . ....+..+++..+++.+|+..
T Consensus 77 ~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 132 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI------------------ 132 (501)
T ss_pred HhCCEEEEEechhccCCC------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC------------------
Confidence 345799999999999999 9999998863211 1 112223344555566555532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 133 -------------------------------------------------------------DPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred -------------------------------------------------------------CcCCchhhCCHHHHHHHHH
Confidence 1233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+++... .++.++.++
T Consensus 152 aral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiiiitHd~~~~~-~~~d~i~~l 213 (501)
T PRK11288 152 AKALAR------NARVIAFDEPTSSLSAREIE-----------QLFRVIRELRAEGRVILYVSHRMEEIF-ALCDAITVF 213 (501)
T ss_pred HHHHHh------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999998887665543 566666666556889999999987543 344555554
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-22 Score=189.15 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=125.8
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+. .........++.++|++|+.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~--~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVL---IDGEPLD--YSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEE---ECCEEcc--ccccchHHHHhhEEEEecCh
Confidence 5567999999999 9999999999999999955 56789999 8887331 11111123345799999986
Q ss_pred c-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCC
Q psy91 162 V-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPY 240 (541)
Q Consensus 162 ~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~ 240 (541)
. .+... |+.||+.++.........+..+.+..+++.+|+..
T Consensus 78 ~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------------------- 119 (190)
T TIGR01166 78 DDQLFAA------DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-------------------------------- 119 (190)
T ss_pred hhccccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh--------------------------------
Confidence 3 23346 99999987522111222233344555666665532
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~ 320 (541)
+.++.+..+|+|++|++.|+++++. ++
T Consensus 120 -----------------------------------------------~~~~~~~~LS~G~~qrv~laral~~------~p 146 (190)
T TIGR01166 120 -----------------------------------------------LRERPTHCLSGGEKKRVAIAGAVAM------RP 146 (190)
T ss_pred -----------------------------------------------hhhCChhhCCHHHHHHHHHHHHHhc------CC
Confidence 1123345689999999999999998 99
Q ss_pred eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 321 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 321 ~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
+++|+|||..|-+..+.. .+.++|.+..+.++++++.+|+.+.
T Consensus 147 ~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 147 DVLLLDEPTAGLDPAGRE-----------QMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999998887665543 6667777665567889999998763
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-22 Score=187.46 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=154.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+++|+++||++.+++||||++ +++|||||||||.+|+| +..+++|.|. ++|..+ . ...
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~---~~g~~~----~----~~~ 70 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT---WNGGPL----S----QEI 70 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEE---EcCcch----h----hhh
Confidence 468999999999999999999999 99999999999999999 4567789999 888722 1 133
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
..+|||++.+..|+|.+ ||.|.+.|-...+++++++....+..+|+.+++.+
T Consensus 71 ~~rIGyLPEERGLy~k~------tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~---------------------- 122 (300)
T COG4152 71 KNRIGYLPEERGLYPKM------TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG---------------------- 122 (300)
T ss_pred hhhcccChhhhccCccC------cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc----------------------
Confidence 45799999999999999 99999887645567888888888888888887765
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+...++..+|.|.+|.+++..+.
T Consensus 123 ---------------------------------------------------------~~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 123 ---------------------------------------------------------KKTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred ---------------------------------------------------------cccchHHHhhhhhhHHHHHHHHH
Confidence 22234556788889999988888
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+. +|.|+|+|||..|.+.-|.+ .+.+.+.+....+.|+++++|.++-.+ ++|.+|-
T Consensus 146 iH------ePeLlILDEPFSGLDPVN~e-----------lLk~~I~~lk~~GatIifSsH~Me~vE-eLCD~ll 201 (300)
T COG4152 146 IH------EPELLILDEPFSGLDPVNVE-----------LLKDAIFELKEEGATIIFSSHRMEHVE-ELCDRLL 201 (300)
T ss_pred hc------CCCEEEecCCccCCChhhHH-----------HHHHHHHHHHhcCCEEEEecchHHHHH-HHhhhhh
Confidence 88 99999999997776655553 556667777788999999999887443 2444443
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-22 Score=203.43 Aligned_cols=204 Identities=13% Similarity=0.055 Sum_probs=144.4
Q ss_pred ceeeecccccc----cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceecc
Q psy91 79 YIGFATLPEQV----HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 79 ~i~~~~l~~~~----~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~~ 142 (541)
.+.++||++.| +...+|++|||+| ||+|+||||||||+++|++. ++.|+|+ ++|+.+.. .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~---~~g~~i~~-~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR---FDDIDLLR-L 78 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE---ECCEECCc-C
Confidence 57899999999 3457999999999 99999999999999999554 3679999 88874321 1
Q ss_pred ccccc-ccccccEEEEeCCCc--cccccccccCCCcccceecccc---ccc--h-hhHhHhhhHHHHHHHhCCCCccchh
Q psy91 143 AGTKV-RGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATL---PEQ--V-HRKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 143 ~~~~~-~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~---~~~--~-~~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
..... ..+++.++||||+.. +.|.+ |+.+++.+... ... . ...+..+++.++++.+|+....+
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~-- 150 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSE------RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD-- 150 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccc------cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--
Confidence 11111 123457999999975 67778 88888864310 000 0 11233445667777777753100
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
..+..+
T Consensus 151 --------------------------------------------------------------------------~~~~~p 156 (330)
T PRK15093 151 --------------------------------------------------------------------------AMRSFP 156 (330)
T ss_pred --------------------------------------------------------------------------HHhCCc
Confidence 113345
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSM 372 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~ 372 (541)
..+|+|++|++.|+++++. +++|+|+|||..|.+..... ++.++|.+..+ .+.++++.+|++
T Consensus 157 ~~LSgG~~QRv~iArAL~~------~P~llilDEPts~LD~~~~~-----------~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 157 YELTEGECQKVMIAIALAN------QPRLLIADEPTNAMEPTTQA-----------QIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred hhCCHHHHHHHHHHHHHHC------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCH
Confidence 6799999999999999999 99999999998876654443 67777777665 478999999998
Q ss_pred hhhhhcccceeEEE
Q psy91 373 DIEERGVKLRLTVV 386 (541)
Q Consensus 373 di~~~~l~~rvnvI 386 (541)
.... .+..++.++
T Consensus 220 ~~v~-~~~dri~vm 232 (330)
T PRK15093 220 QMLS-QWADKINVL 232 (330)
T ss_pred HHHH-HhCCEEEEE
Confidence 7654 355666555
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=195.19 Aligned_cols=203 Identities=15% Similarity=0.118 Sum_probs=142.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++++++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|+ ++|..+.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~--~~ 80 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI---YEGKNIYS--NN 80 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE---ECCEeccc--cc
Confidence 4689999999999888999999999 999999999999999996642 379999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++||+|+..+++ + |+.||+.++...... ......+.+..+++.+|+...
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 139 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-M------SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------------- 139 (254)
T ss_pred ccHHHHhhceEEEeecccccc-C------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh--------------
Confidence 111233557999999988774 7 999999876321111 122233445556666554210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+. + ..+..+..+|+|++|+
T Consensus 140 -------------------------------------------------------l~-----~-~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 140 -------------------------------------------------------VK-----D-KLNTNALSLSGGQQQR 158 (254)
T ss_pred -------------------------------------------------------hH-----H-HHhCCcccCCHHHHHH
Confidence 00 0 1122456799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ +.++++.+|+.+... .+..++
T Consensus 159 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tvii~sH~~~~~~-~~~d~i 219 (254)
T PRK14273 159 LCIARTLAI------EPNVILMDEPTSALDPISTG-----------KIEELIINLKE-SYTIIIVTHNMQQAG-RISDRT 219 (254)
T ss_pred HHHHHHHHc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCEE
Confidence 999999998 99999999998886655543 55666666543 578889999887533 345566
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 220 ~~l 222 (254)
T PRK14273 220 AFF 222 (254)
T ss_pred EEE
Confidence 555
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-21 Score=194.51 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=145.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~ 142 (541)
|.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~---~~g~~i~~-- 75 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL---LDGKNIYD-- 75 (251)
T ss_pred CccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE---ECCEeccc--
Confidence 356789999999999888999999999 999999999999999997642 579999 88873311
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++|++|+..+++ . |+.+|+.++....+. .......++..+++.+|+...
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 136 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-M------SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE------------ 136 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-C------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh------------
Confidence 01111123457999999988886 7 999999876211111 122233445556666665310
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. + ..+..+..+|+|++
T Consensus 137 ---------------------------------------------------------~~-----~-~~~~~~~~LS~G~~ 153 (251)
T PRK14270 137 ---------------------------------------------------------VK-----D-DLKKSALKLSGGQQ 153 (251)
T ss_pred ---------------------------------------------------------hh-----h-HhhCCcccCCHHHH
Confidence 00 0 11224557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+.. ..+..
T Consensus 154 qrv~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~L~~~~~-~~tiiivsH~~~~~-~~~~d 214 (251)
T PRK14270 154 QRLCIARTIAV------KPDVILMDEPTSALDPISTL-----------KIEDLMVELKK-EYTIVIVTHNMQQA-SRVSD 214 (251)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-CCeEEEEEcCHHHH-HHhcC
Confidence 99999999988 99999999998887766553 56666666544 47888999987643 24556
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 215 ~v~~l~ 220 (251)
T PRK14270 215 YTAFFL 220 (251)
T ss_pred EEEEEE
Confidence 666663
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-21 Score=188.66 Aligned_cols=193 Identities=18% Similarity=0.223 Sum_probs=139.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|..+ ... .
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~i----~~~---~ 79 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ---IDGKTA----TRG---D 79 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEE---ECCEEc----cch---h
Confidence 4689999999999888999999999 9999999999999999955 56789999 888732 111 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++.+ |+.+|+.+...... ....+.+..++..+|+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~--------------------- 129 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADL------STLENLHFLCGLHG---RRAKQMPGSALAIVGLAG--------------------- 129 (214)
T ss_pred hhhceEEeecCcccccCC------cHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChh---------------------
Confidence 234689999998888888 99999876411000 011122333344333321
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.+..+..+|+|++|++.|+++
T Consensus 130 ----------------------------------------------------------~~~~~~~~LS~G~~qrv~lara 151 (214)
T PRK13543 130 ----------------------------------------------------------YEDTLVRQLSAGQKKRLALARL 151 (214)
T ss_pred ----------------------------------------------------------hccCChhhCCHHHHHHHHHHHH
Confidence 1233455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+.... ++.++.++
T Consensus 152 l~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~i~~l 210 (214)
T PRK13543 152 WLS------PAPLWLLDEPYANLDLEGIT-----------LVNRMISAHLRGGGAALVTTHGAYAAPP-VRTRMLTL 210 (214)
T ss_pred Hhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecChhhhhh-hcceEEEE
Confidence 998 99999999998886655543 6677777666667899999998774432 44455444
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-21 Score=188.65 Aligned_cols=178 Identities=18% Similarity=0.215 Sum_probs=134.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++||++.|+++.+|+++||+| ||+|||||||||||++|++ .+.+|+|. ++|..+. ... ...+
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~----~~~-~~~~ 72 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL---LNGGPLD----FQR-DSIA 72 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEecc----ccc-HHhh
Confidence 46889999999889999999999 9999999999999999955 46789999 8887321 111 2344
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+++|+.+... . ...+++..+++.+|+.+.
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~-~-----~~~~~~~~~l~~~~l~~~---------------------- 118 (201)
T cd03231 73 RGLLYLGHAPGIKTTL------SVLENLRFWHA-D-----HSDEQVEEALARVGLNGF---------------------- 118 (201)
T ss_pred hheEEeccccccCCCc------CHHHHHHhhcc-c-----ccHHHHHHHHHHcCChhh----------------------
Confidence 5799999999888888 99999987521 0 012345566666666421
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+..+..+|+|++|++.|+++++
T Consensus 119 ---------------------------------------------------------~~~~~~~LS~G~~qrl~laral~ 141 (201)
T cd03231 119 ---------------------------------------------------------EDRPVAQLSAGQQRRVALARLLL 141 (201)
T ss_pred ---------------------------------------------------------hcCchhhCCHHHHHHHHHHHHHh
Confidence 12234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
. +++++|+|||..|-+..... .+.+.|.+..+.+.++++.+|+..
T Consensus 142 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 142 S------GRPLWILDEPTTALDKAGVA-----------RFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred c------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCch
Confidence 8 99999999998886655443 666667666556788888888654
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-21 Score=195.66 Aligned_cols=203 Identities=15% Similarity=0.078 Sum_probs=143.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|..+... .
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~---~~g~~i~~~--~ 86 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVL---FDGTDLYDP--R 86 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEcccc--c
Confidence 4689999999999889999999999 99999999999999999664 4689999 888732110 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++||+|+..+++ . |+.||+.++....... ....+.+..+++.+|+...
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------------- 143 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-K------SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDE--------------- 143 (269)
T ss_pred CCHHHHhhceEEEccCCccch-h------hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcch---------------
Confidence 111223457999999988775 6 8999998763211111 1122344455555554310
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ .. ..+..+..+|+|++|++
T Consensus 144 ------------------------------------------------------l-----~~-~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 144 ------------------------------------------------------C-----KD-KLNESGYSLSGGQQQRL 163 (269)
T ss_pred ------------------------------------------------------h-----hh-hhCCCcccCCHHHHHHH
Confidence 0 00 11334567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ ++++++.+|+.+.. ..++.++.
T Consensus 164 ~laral~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~~~~-~~tiiivtH~~~~~-~~~~d~i~ 224 (269)
T PRK14259 164 CIARTIAI------EPEVILMDEPCSALDPISTL-----------KIEETMHELKK-NFTIVIVTHNMQQA-VRVSDMTA 224 (269)
T ss_pred HHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHH-HHhcCEEE
Confidence 99999998 99999999998886655543 56666665533 57889999987744 34666777
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 225 ~l~ 227 (269)
T PRK14259 225 FFN 227 (269)
T ss_pred EEe
Confidence 765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-22 Score=193.52 Aligned_cols=195 Identities=15% Similarity=0.193 Sum_probs=137.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
+.++||++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR---LDGEDI----TKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEEC----CCCCHHHHH
Confidence 46889999999889999999999 9999999999999999955 46789999 888732 11111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++....... ..+.+..++..++.
T Consensus 74 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~------------------------ 120 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRL------TVEENLLTGLAALPRR---SRKIPDEIYELFPV------------------------ 120 (230)
T ss_pred HhCeEEeccCCcccCCC------cHHHHHHHHHHhcCcc---hHHHHHHHHHHHHh------------------------
Confidence 45799999999999988 9999987752111100 01111222222210
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
... ..+..+..+|+|++|++.|++++
T Consensus 121 -----------------------------------------------------l~~-~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 121 -----------------------------------------------------LKE-MLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred -----------------------------------------------------HHH-HhhCChhhCCHHHHHHHHHHHHH
Confidence 001 22345667899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... ++.+.|.+..+. ++++++.+|+.+... .++.++.++
T Consensus 147 ~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l 205 (230)
T TIGR03410 147 VT------RPKLLLLDEPTEGIQPSIIK-----------DIGRVIRRLRAEGGMAILLVEQYLDFAR-ELADRYYVM 205 (230)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHcCCcEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998876655543 667777766553 789999999987443 344555555
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=204.00 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=138.6
Q ss_pred cccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEE
Q psy91 84 TLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWG 155 (541)
Q Consensus 84 ~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g 155 (541)
||+++|+++.+ ++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+............++.++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~---~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV---LNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEECccCccccccchhhCCeE
Confidence 78889987654 899998 9999999999999999955 56789999 88873321100001123345799
Q ss_pred EEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCC
Q psy91 156 VVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235 (541)
Q Consensus 156 ~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~ 235 (541)
||+|+..+++++ ||.+|+.|+.... ...+..+++.++++.+|+.+
T Consensus 79 ~v~q~~~l~~~~------tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~--------------------------- 123 (354)
T TIGR02142 79 YVFQEARLFPHL------SVRGNLRYGMKRA--RPSERRISFERVIELLGIGH--------------------------- 123 (354)
T ss_pred EEecCCccCCCC------cHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChh---------------------------
Confidence 999999999999 9999998862211 11222334556666665532
Q ss_pred CCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeee
Q psy91 236 GSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315 (541)
Q Consensus 236 ~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e 315 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 124 ----------------------------------------------------~~~~~~~~LSgGqkqRvalAraL~~--- 148 (354)
T TIGR02142 124 ----------------------------------------------------LLGRLPGRLSGGEKQRVAIGRALLS--- 148 (354)
T ss_pred ----------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHHc---
Confidence 2233456789999999999999998
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|.+..... .+.++|.+..+. +.++++.+|+.+.. ..+..++.++
T Consensus 149 ---~p~lllLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tiiivtH~~~~~-~~~~d~i~~l 205 (354)
T TIGR02142 149 ---SPRLLLMDEPLAALDDPRKY-----------EILPYLERLHAEFGIPILYVSHSLQEV-LRLADRVVVL 205 (354)
T ss_pred ---CCCEEEEcCCCcCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 99999999998876655443 667777766554 78899999988743 3355566555
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=201.68 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=147.0
Q ss_pred CCCceeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CC---CCCeeecccCCcccee
Q psy91 76 DRDYIGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DL---YGDRKVPNVNGSNTVI 140 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~---~G~i~~~~~~G~~~~~ 140 (541)
..+.+.++||++.|+ ...+|+||||+| ||+|+||||||||+++|++. +. +|+|. ++|..+..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~---~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT---FNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE---ECCEECCc
Confidence 445789999999995 356999999999 99999999999999999553 33 79999 88874321
Q ss_pred cccccccc-cccccEEEEeCCC--ccccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 141 EVAGTKVR-GRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 141 ~~~~~~~~-~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
......+ .+.+.++||||+. .++|.+ ++.+++.... ........+..+++.++++.+|+.+..
T Consensus 86 -~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~------~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~------ 152 (330)
T PRK09473 86 -LPEKELNKLRAEQISMIFQDPMTSLNPYM------RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR------ 152 (330)
T ss_pred -CCHHHHHHHhcCCEEEEEcCchhhcCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChH------
Confidence 1111111 2235799999997 688888 8888776541 111223344455666777777664200
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
. ..++.+..+
T Consensus 153 ---------------------------------------------------------------------~-~~~~~p~~L 162 (330)
T PRK09473 153 ---------------------------------------------------------------------K-RMKMYPHEF 162 (330)
T ss_pred ---------------------------------------------------------------------H-HhcCCcccC
Confidence 0 112345679
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +++|+|+|||..|.+..... ++.+.|.+..+. +.++++.+|+++..
T Consensus 163 SgG~~QRv~IArAL~~------~P~llilDEPts~LD~~~~~-----------~i~~lL~~l~~~~g~til~iTHdl~~~ 225 (330)
T PRK09473 163 SGGMRQRVMIAMALLC------RPKLLIADEPTTALDVTVQA-----------QIMTLLNELKREFNTAIIMITHDLGVV 225 (330)
T ss_pred CHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 9999999999999998 99999999998876655443 666777766554 78999999998854
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. .++.++.++
T Consensus 226 ~-~~~Dri~vm 235 (330)
T PRK09473 226 A-GICDKVLVM 235 (330)
T ss_pred H-HhCCEEEEE
Confidence 3 356666665
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-22 Score=189.05 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=133.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++.+|+++||+| +|+||||||||||+++|+| .+..|+|. ++|..+. ... ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~----~~~-~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR---WNGTALA----EQR-DEPH 72 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCEEcc----cch-HHhh
Confidence 46789999999999999999999 9999999999999999955 47789999 8887321 111 1234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+...... .+ .+.+..+++.+|+...
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~~~---------------------- 120 (198)
T TIGR01189 73 RNILYLGHLPGLKPEL------SALENLHFWAAIHG---GA-QRTIEDALAAVGLTGF---------------------- 120 (198)
T ss_pred hheEEeccCcccccCC------cHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCHHH----------------------
Confidence 5789999998888888 99999876521111 11 2234555666555321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+..+..+|+|++|++.|+++++
T Consensus 121 ---------------------------------------------------------~~~~~~~LS~G~~qrv~la~al~ 143 (198)
T TIGR01189 121 ---------------------------------------------------------EDLPAAQLSAGQQRRLALARLWL 143 (198)
T ss_pred ---------------------------------------------------------hcCChhhcCHHHHHHHHHHHHHh
Confidence 12234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
. +++++|+|||..|-+..... .+.+.+.+..+.++++++.+|+..
T Consensus 144 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 144 S------RAPLWILDEPTTALDKAGVA-----------LLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred c------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEEcccc
Confidence 8 99999999998887655443 566666665555788888888653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-21 Score=195.90 Aligned_cols=204 Identities=13% Similarity=0.156 Sum_probs=138.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CC--------CCCeeecccCCccceeccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DL--------YGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~--------~G~i~~~~~~G~~~~~~~~ 143 (541)
+.++|++++|+++.+|+++||+| +|+|||||||||||++|+|. +. .|+|. ++|..+ .
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~---~~g~~~----~ 74 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT---LNGEPL----A 74 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE---ECCEEc----c
Confidence 67899999999889999999999 99999999999999999664 44 78888 777722 1
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
......+++.++|++|+..+++.+ |+.||+.++..+.. ....+..+.+..+++.+|+..
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------- 137 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAF------SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA----------- 137 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCC------cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------
Confidence 111122344589999998766667 99999987632210 001112233444555554421
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
+.++.+..+|+|
T Consensus 138 --------------------------------------------------------------------~~~~~~~~LSgG 149 (272)
T PRK13547 138 --------------------------------------------------------------------LVGRDVTTLSGG 149 (272)
T ss_pred --------------------------------------------------------------------hhcCCcccCCHH
Confidence 112345678999
Q ss_pred CCcceEEeeeEEEe---eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 300 QGKTTTIEKKSMDI---EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 300 ~~q~v~I~~~~~~i---~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
++|++.|+++++.- .....+++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+..
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tviiisH~~~~~ 218 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH-----------RLLDTVRRLARDWNLGVLAIVHDPNLA 218 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 99999999998710 0000179999999998876655443 566666666554 78899999987744
Q ss_pred hhcccceeEEEc
Q psy91 376 ERGVKLRLTVVD 387 (541)
Q Consensus 376 ~~~l~~rvnvIp 387 (541)
. ++..++.++.
T Consensus 219 ~-~~~d~i~~l~ 229 (272)
T PRK13547 219 A-RHADRIAMLA 229 (272)
T ss_pred H-HhCCEEEEEE
Confidence 3 3555666653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-21 Score=197.98 Aligned_cols=205 Identities=19% Similarity=0.146 Sum_probs=140.5
Q ss_pred Cceeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|++++|+++ .+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+......
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI---VGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEEccccccc
Confidence 458999999999864 4999999999 9999999999999999955 46789999 888732110000
Q ss_pred -cccccccccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 145 -TKVRGRQYPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 145 -~~~~~~~~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
......++.++|++|+... +... |+.+|+.++............+.+..+++.+|+..
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------------- 141 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQE------TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------------- 141 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhhh------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh--------------
Confidence 1112334579999998632 2235 89999987632111222223334445555555421
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ +.++.+..+|+|++|
T Consensus 142 ---------------------------------------------------------------~-~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 142 ---------------------------------------------------------------D-YVKRSPFELSGGQKR 157 (289)
T ss_pred ---------------------------------------------------------------h-HhcCChhhCCHHHHH
Confidence 0 122345568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ .++++++.+|+.+.. .++..
T Consensus 158 rv~laral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiiiisH~~~~~-~~~~d 219 (289)
T PRK13645 158 RVALAGIIAM------DGNTLVLDEPTGGLDPKGEE-----------DFINLFERLNKEYKKRIIMVTHNMDQV-LRIAD 219 (289)
T ss_pred HHHHHHHHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCC
Confidence 9999999998 99999999998887665543 56666666654 378899999987743 33555
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 220 ~i~~l~ 225 (289)
T PRK13645 220 EVIVMH 225 (289)
T ss_pred EEEEEE
Confidence 665553
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-21 Score=191.23 Aligned_cols=195 Identities=17% Similarity=0.251 Sum_probs=142.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.+++++++|+++.+|+++||+| +|+|||||||||||++|++ .+..|+|. ++|..+ .... ..+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~---~~g~~~----~~~~--~~~ 71 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL---LDGKDI----TNLP--PHK 71 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEc----CcCC--hhh
Confidence 46889999999889999999999 9999999999999999955 46689999 888722 2111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++............+.+..+++.+|+..
T Consensus 72 ~~i~~~~q~~~~~~~~------t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (232)
T cd03300 72 RPVNTVFQNYALFPHL------TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG----------------------- 122 (232)
T ss_pred cceEEEecccccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------------
Confidence 5799999999988888 99999876521111122223334555666666542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 123 --------------------------------------------------------YANRKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred --------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHHh
Confidence 112234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.+.|.+..+. ++++++.+|+.+.. .....++.++
T Consensus 147 ~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~~~~~tiii~sh~~~~~-~~~~d~i~~l 204 (232)
T cd03300 147 N------EPKVLLLDEPLGALDLKLRK-----------DMQLELKRLQKELGITFVFVTHDQEEA-LTMSDRIAVM 204 (232)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhcCEEEEE
Confidence 9 99999999998887766654 666777766543 78999999987643 2344455444
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=195.30 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=141.2
Q ss_pred Cceeeecccccccc---------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHR---------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~ 140 (541)
+.+.++||+++|+. +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~-- 77 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL---IDDHPL-- 77 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEEC--
Confidence 35889999999962 46999999999 9999999999999999955 46789999 888732
Q ss_pred cccccccccccccEEEEeCCCc--cccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.......+++.++|++|+.. +++.+ |+.+++.++.. ..........+.+..+++.+|+..
T Consensus 78 --~~~~~~~~~~~i~~v~q~~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 140 (267)
T PRK15112 78 --HFGDYSYRSQRIRMIFQDPSTSLNPRQ------RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--------- 140 (267)
T ss_pred --CCCchhhHhccEEEEecCchhhcCcch------hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 21112223356999999864 56677 88888776411 111122233345566666666621
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
...+..+..+|
T Consensus 141 ---------------------------------------------------------------------~~~~~~~~~LS 151 (267)
T PRK15112 141 ---------------------------------------------------------------------DHASYYPHMLA 151 (267)
T ss_pred ---------------------------------------------------------------------HHHhcCchhcC
Confidence 01122345689
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEE 376 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~ 376 (541)
+|++|++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+. +.++++.+|+.+...
T Consensus 152 ~G~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 152 PGQKQRLGLARALIL------RPKVIIADEALASLDMSMRS-----------QLINLMLELQEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHHHHHHHHHHHHHh------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 999999999999998 99999999998887665543 566667766543 788999999877443
Q ss_pred hcccceeEEEc
Q psy91 377 RGVKLRLTVVD 387 (541)
Q Consensus 377 ~~l~~rvnvIp 387 (541)
.+..++.++.
T Consensus 215 -~~~d~i~~l~ 224 (267)
T PRK15112 215 -HISDQVLVMH 224 (267)
T ss_pred -HhcCEEEEEE
Confidence 4556666653
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-21 Score=190.35 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=133.5
Q ss_pred eeeecccccccc-------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccC--Cc--ccee
Q psy91 80 IGFATLPEQVHR-------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVN--GS--NTVI 140 (541)
Q Consensus 80 i~~~~l~~~~~~-------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~--G~--~~~~ 140 (541)
+.++|+++.|+. +.+|+++||+| +|+|||||||||||++|++ .+..|+|. ++ |. .+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~~~g~~~~~~- 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL---VRHEGAWVDLA- 77 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---EecCCCccchh-
Confidence 678999999963 46999999999 9999999999999999955 46789998 66 32 110
Q ss_pred ccccccc-ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 141 EVAGTKV-RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 141 ~~~~~~~-~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
..+.... ..+++.++|++|+..+++.+ |+.|++.+.....+.......+.+..+++.+|+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------- 140 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRV------SALEVVAEPLLERGVPREAARARARELLARLNIPE----------- 140 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------
Confidence 0010100 11234689999999999999 99999876411111112222334455555555432
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
.+.+..+..+|+|
T Consensus 141 -------------------------------------------------------------------~~~~~~~~~LS~G 153 (224)
T TIGR02324 141 -------------------------------------------------------------------RLWHLPPATFSGG 153 (224)
T ss_pred -------------------------------------------------------------------hhhhCCcccCCHH
Confidence 0112235568999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.+.++++.+|+.++.
T Consensus 154 ~~qrl~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 154 EQQRVNIARGFIA------DYPILLLDEPTASLDAANRQ-----------VVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred HHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999998 99999999998887655543 56666766655578899999996644
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-21 Score=213.83 Aligned_cols=202 Identities=15% Similarity=0.090 Sum_probs=144.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccC---------------
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVN--------------- 134 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~--------------- 134 (541)
|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. +.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~---~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII---YHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE---Eeccccccccccccccc
Confidence 46889999999888999999999 99999999999999999664 7789998 54
Q ss_pred --------Cccce---ecccc---cccccccccEEEEeCC-CccccccccccCCCcccceeccccccchhhHhHhhhHHH
Q psy91 135 --------GSNTV---IEVAG---TKVRGRQYPWGVVEGS-TVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDF 199 (541)
Q Consensus 135 --------G~~~~---~~~~~---~~~~~~~~~~g~V~Q~-~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~ 199 (541)
|..+. ..... ......++.++||+|+ ..+++.+ |+.+|+.++....+....+..+++.+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD------TVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 21110 00000 0011234569999997 6888888 99999987521122223344456667
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHH
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLV 279 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~i 279 (541)
+++.+|+.+
T Consensus 152 ~l~~~gl~~----------------------------------------------------------------------- 160 (520)
T TIGR03269 152 LIEMVQLSH----------------------------------------------------------------------- 160 (520)
T ss_pred HHHHcCChh-----------------------------------------------------------------------
Confidence 777776643
Q ss_pred hhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc
Q psy91 280 NSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359 (541)
Q Consensus 280 n~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~ 359 (541)
+.++.+..+|+|++|++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..
T Consensus 161 --------~~~~~~~~LSgGq~qrv~iA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~ 215 (520)
T TIGR03269 161 --------RITHIARDLSGGEKQRVVLARQLAK------EPFLFLADEPTGTLDPQTAK-----------LVHNALEEAV 215 (520)
T ss_pred --------hhhcCcccCCHHHHHHHHHHHHHhc------CCCEEEeeCCcccCCHHHHH-----------HHHHHHHHHH
Confidence 1123456799999999999999998 99999999998876655543 5666666664
Q ss_pred c-cCcceeeccccchhhhhcccceeEEEc
Q psy91 360 R-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 360 ~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+ .+.++++.+|+.+... .++.++.++.
T Consensus 216 ~~~g~tviivtHd~~~~~-~~~d~i~~l~ 243 (520)
T TIGR03269 216 KASGISMVLTSHWPEVIE-DLSDKAIWLE 243 (520)
T ss_pred HhcCcEEEEEeCCHHHHH-HhcCEEEEEe
Confidence 4 4788999999987543 3555666553
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-21 Score=189.87 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=138.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++||+++|++.. .++||+| +|+|||||||||||++|+| .+.+|+|. ++|+.+ .... ...
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~--~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT---LNGQDH----TTTP--PSR 70 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCeec----CcCC--hhh
Confidence 67899999998644 4899998 9999999999999999955 56789999 888732 1111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.++..+.........+++.++++.+|+..
T Consensus 71 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 121 (232)
T PRK10771 71 RPVSMLFQENNLFSHL------TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED----------------------- 121 (232)
T ss_pred ccEEEEecccccccCC------cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-----------------------
Confidence 4699999999999888 99999987522110011122334555566655532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 122 --------------------------------------------------------~~~~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 122 --------------------------------------------------------LLARLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred --------------------------------------------------------HHhCCcccCCHHHHHHHHHHHHHh
Confidence 122344568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 146 ~------~p~lllLDEP~~gLD~~~~~-----------~~~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 203 (232)
T PRK10771 146 R------EQPILLLDEPFSALDPALRQ-----------EMLTLVSQVCQERQLTLLMVSHSLEDAA-RIAPRSLVV 203 (232)
T ss_pred c------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 9 99999999998887665553 66677776654 3788999999988443 344555555
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=186.98 Aligned_cols=182 Identities=15% Similarity=0.091 Sum_probs=134.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|+ ++|+.+ ... ....+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~---~~g~~~----~~~-~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL---FERQSI----KKD-LCTYQ 73 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE---ECCCcc----ccC-HHHHH
Confidence 67899999999889999999999 9999999999999999955 47789999 888732 111 12234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++.... . ....+.++++.+++..
T Consensus 74 ~~i~~~~q~~~~~~~~------tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~----------------------- 119 (200)
T PRK13540 74 KQLCFVGHRSGINPYL------TLRENCLYDIHFS---P--GAVGITELCRLFSLEH----------------------- 119 (200)
T ss_pred hheEEeccccccCcCC------CHHHHHHHHHhcC---c--chHHHHHHHHHcCCch-----------------------
Confidence 5799999999888888 9999988752110 0 1123344444444321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 120 --------------------------------------------------------~~~~~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 120 --------------------------------------------------------LIDYPCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred --------------------------------------------------------hhhCChhhcCHHHHHHHHHHHHHh
Confidence 112234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.....
T Consensus 144 ~------~p~~lilDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 144 S------KAKLWLLDEPLVALDELSLL-----------TIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred c------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 9 99999999998886655443 666777766556788899998876554
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-21 Score=193.99 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=140.2
Q ss_pred ceeeeccccccc---------ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec
Q psy91 79 YIGFATLPEQVH---------RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 79 ~i~~~~l~~~~~---------~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~ 141 (541)
.+.++||++.|+ ++.+|+++||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~- 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS---FRGQDLYQ- 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEccc-
Confidence 378899999995 367999999999 9999999999999999955 47789999 88873211
Q ss_pred ccccccccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 VAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.........++.++||+|+. .+++.+ |+.+|+.++.. ..........+++..+++.+|+..
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------- 141 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS---------- 141 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 11111112345799999986 466778 99998876411 011112223344555666665531
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
.+.+..+..+|+
T Consensus 142 --------------------------------------------------------------------~~~~~~~~~LSg 153 (265)
T TIGR02769 142 --------------------------------------------------------------------EDADKLPRQLSG 153 (265)
T ss_pred --------------------------------------------------------------------hhhhCChhhCCH
Confidence 011233456899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~ 377 (541)
|++|++.|+++++. +++++|+|||..|.+..... .+.++|.+..+. ++++++.+|+.+...
T Consensus 154 Ge~qrv~laral~~------~p~illLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tiiivsH~~~~~~- 215 (265)
T TIGR02769 154 GQLQRINIARALAV------KPKLIVLDEAVSNLDMVLQA-----------VILELLRKLQQAFGTAYLFITHDLRLVQ- 215 (265)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEeCCHHHHH-
Confidence 99999999999998 99999999998776654443 666777766554 789999999887543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.+..++.++
T Consensus 216 ~~~d~i~~l 224 (265)
T TIGR02769 216 SFCQRVAVM 224 (265)
T ss_pred HHhcEEEEE
Confidence 244555555
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-21 Score=190.82 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=141.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+++++++++|+++.+|+++||++ +|+||||||||||+++|+| .+.+|+|. ++|..+ .... ..+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---i~g~~~----~~~~--~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR---LNGQDA----TRVH--ARD 71 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEc----CcCC--hhh
Confidence 46889999999889999999999 9999999999999999955 46789999 788732 1111 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+.............+.+..+++.+|+..
T Consensus 72 ~~i~~~~q~~~~~~~~------t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (237)
T TIGR00968 72 RKIGFVFQHYALFKHL------TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG----------------------- 122 (237)
T ss_pred cCEEEEecChhhccCC------cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------------------
Confidence 5799999999999888 99999987521111111222334445555555422
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 123 --------------------------------------------------------LGDRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred --------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 112234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..+.. .+.++|.+..+. ++++++.+|..+.. ..+..++.++.
T Consensus 147 ~------~p~llllDEP~~~LD~~~~~-----------~~~~~l~~~~~~~~~tvli~sH~~~~~-~~~~d~i~~l~ 205 (237)
T TIGR00968 147 V------EPQVLLLDEPFGALDAKVRK-----------ELRSWLRKLHDEVHVTTVFVTHDQEEA-MEVADRIVVMS 205 (237)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HhhcCEEEEEE
Confidence 8 99999999998887766553 666777766554 78999999987743 33455555553
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-21 Score=189.54 Aligned_cols=199 Identities=21% Similarity=0.187 Sum_probs=142.5
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|++ +.+|+++||++ ||+||||||||||+++|+| .+.+|+|+ ++|..+. .......
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~~-~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK---VLGQELY-GASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEhH-hcCHhHH
Confidence 678999999975 67999999999 9999999999999999955 46789999 8887321 1111111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.++|++|+..+++.+ |+.+|+.++.... .....+....+.++++.+|+..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~------t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 133 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFL------TARQNVQMALELQPNLSYQEARERARAMLEAVGLGD------------------ 133 (220)
T ss_pred HHHHhheEEEcCChhhcCCC------CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 12346799999999999888 9999998762211 1122333345566666666532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..+..+..+|+|++|++.|
T Consensus 134 -------------------------------------------------------------~~~~~~~~lS~G~~qrv~l 152 (220)
T TIGR02982 134 -------------------------------------------------------------HLDYYPHNLSGGQKQRVAI 152 (220)
T ss_pred -------------------------------------------------------------hhhcChhhCCHHHHHHHHH
Confidence 1122334689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..... .+.+.|.+..+ .++++++.+|+.++. .+..++.+
T Consensus 153 aral~~------~p~illlDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sh~~~~~--~~~d~v~~ 213 (220)
T TIGR02982 153 ARALVH------RPKLVLADEPTAALDSKSGR-----------DVVELMQKLAREQGCTILIVTHDNRIL--DVADRIVH 213 (220)
T ss_pred HHHHhc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH--hhCCEEEE
Confidence 999998 99999999998876655443 56666666554 478999999998753 35556555
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 214 l 214 (220)
T TIGR02982 214 M 214 (220)
T ss_pred E
Confidence 4
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-21 Score=186.80 Aligned_cols=192 Identities=19% Similarity=0.209 Sum_probs=138.2
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
.++||++.|+. ++.++||++ +|+||||||||||+++|+| .+.+|+|+ ++|..+ ... ...++
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~--~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK---VNDQSH----TGL--APYQR 70 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEc----ccC--Chhcc
Confidence 57899999974 578999999 9999999999999999955 46789999 888732 111 12345
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.++||+|+..+++.+ |+.+|+.++.............++.++++.+|+..
T Consensus 71 ~i~~v~q~~~~~~~~------t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------ 120 (213)
T TIGR01277 71 PVSMLFQENNLFAHL------TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD------------------------ 120 (213)
T ss_pred ceEEEeccCccCCCC------cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH------------------------
Confidence 799999999999889 99999976521111111122334555666666532
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 121 -------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 121 -------------------------------------------------------YLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred -------------------------------------------------------HhhCCcccCCHHHHHHHHHHHHHhc
Confidence 1123345689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+... .+..++.++
T Consensus 146 ------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~tii~vsh~~~~~~-~~~d~v~~l 202 (213)
T TIGR01277 146 ------PNPILLLDEPFSALDPLLRE-----------EMLALVKQLCSERQRTLLMVTHHLSDAR-AIASQIAVV 202 (213)
T ss_pred ------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-hhcCeEEEE
Confidence 99999999998887665543 666777766543 788999999877443 344555555
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-21 Score=186.64 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=136.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|+++.|+++.+|+++||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+ .. . . .
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~-~-~-~ 71 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK---LDGGDI----DD-P-D-V 71 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEeC----cc-h-h-h
Confidence 478999999999888999999999 9999999999999999955 46789999 778632 11 1 1 3
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+..++|++|+..+++.+ |+.+|+.+....... ..+.+.++++.+|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~------tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~---------------------- 119 (207)
T PRK13539 72 AEACHYLGHRNAMKPAL------TVAENLEFWAAFLGG----EELDIAAALEAVGLAP---------------------- 119 (207)
T ss_pred HhhcEEecCCCcCCCCC------cHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHH----------------------
Confidence 45689999998888888 999998764111010 1123455565555532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 120 ---------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 120 ---------------------------------------------------------LAHLPFGYLSAGQKRRVALARLL 142 (207)
T ss_pred ---------------------------------------------------------HHcCChhhcCHHHHHHHHHHHHH
Confidence 11223346899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+. +++++|+|||..|-+..... ++.++|.+..+.+.++++.+|+.+....
T Consensus 143 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 143 VS------NRPIWILDEPTAALDAAAVA-----------LFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 98 99999999998886655543 6777777665568899999999875543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-21 Score=209.55 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=142.0
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc-ccccccc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT-KVRGRQY 152 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~-~~~~~~~ 152 (541)
++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|+.+ ... .....++
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---FQGKEI----DFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEE---ECCEEC----CCCCHHHHHhC
Confidence 368899998888999999999 9999999999999999955 46789999 888732 211 1112345
Q ss_pred cEEEEeCCCccccccccccCCCcccceecccccc-c--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++||+|+..+++.+ ||.+|+.++.... . .......+++..+++.+|+.+
T Consensus 74 ~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------- 126 (491)
T PRK10982 74 GISMVHQELNLVLQR------SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI--------------------- 126 (491)
T ss_pred CEEEEecccccccCC------CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC---------------------
Confidence 699999999888889 9999998763211 1 112222334555555555432
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..++.+..+|+|++|++.|+++
T Consensus 127 ----------------------------------------------------------~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 127 ----------------------------------------------------------DPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred ----------------------------------------------------------CccCchhhCCHHHHHHHHHHHH
Confidence 1233456789999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... ++.++|.+..+.+.++++.+|+.+... .++.++.++
T Consensus 149 l~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tvii~tH~~~~~~-~~~d~i~~l 207 (491)
T PRK10982 149 FSY------NAKIVIMDEPTSSLTEKEVN-----------HLFTIIRKLKERGCGIVYISHKMEEIF-QLCDEITIL 207 (491)
T ss_pred HHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998 99999999998886655443 666667666556889999999987543 345566555
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-21 Score=192.44 Aligned_cols=206 Identities=18% Similarity=0.111 Sum_probs=144.8
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
....|.++|++++|+++.+|+++||++ ||+|||||||||||++|+|. +.+|+|. ++|..+..
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~~~~-- 91 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL---YRGIDINR-- 91 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE---ECCEEccc--
Confidence 345799999999999889999999999 99999999999999999664 3689999 88873210
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++||+|+..+++ . |+.+|+.++....+. ........+..+++.+|+.....
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---------- 154 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPFA-K------SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK---------- 154 (267)
T ss_pred ccCChHHHhcceEEEecCCcccc-c------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh----------
Confidence 01111223457999999987775 6 999999876211111 12233345556666666632100
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
. ..+..+..+|+|++
T Consensus 155 ----------------------------------------------------------------~-~~~~~~~~LS~G~~ 169 (267)
T PRK14237 155 ----------------------------------------------------------------D-DLHKSALTLSGGQQ 169 (267)
T ss_pred ----------------------------------------------------------------h-hhcCCcccCCHHHH
Confidence 0 11234567899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+ +.++++.+|+.+.. ..+..
T Consensus 170 qrl~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~~-~~~~d 230 (267)
T PRK14237 170 QRLCIARAIAV------KPDILLMDEPASALDPISTM-----------QLEETMFELKK-NYTIIIVTHNMQQA-ARASD 230 (267)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHH-HHhcC
Confidence 99999999998 99999999998887655443 56666666643 57888999987643 23555
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 231 ~i~~l~ 236 (267)
T PRK14237 231 YTAFFY 236 (267)
T ss_pred EEEEEE
Confidence 666653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-21 Score=192.19 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=143.3
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. ..|+|. ++|..+.. .
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~---~~g~~~~~--~ 84 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN---YNGSNILK--G 84 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE---ECCEEccc--c
Confidence 35789999999999889999999999 999999999999999996532 479999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....+. ...+..+++..+++.+|+.....
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 146 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFP-Q------SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK----------- 146 (259)
T ss_pred ccCHHHHhhceEEEecCCcccc-c------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----------
Confidence 0111233457999999987764 5 899999876211111 12233344556666666532000
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ ..+..+..+|+|++|
T Consensus 147 ---------------------------------------------------------------~-~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 147 ---------------------------------------------------------------D-RLHTQALSLSGGQQQ 162 (259)
T ss_pred ---------------------------------------------------------------h-hhhCCcccCCHHHHH
Confidence 0 112234568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .+..+
T Consensus 163 rv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiivtH~~~~~~-~~~d~ 223 (259)
T PRK14274 163 RLCIARALAT------NPDVLLMDEPTSALDPVSTR-----------KIEELILKLKE-KYTIVIVTHNMQQAA-RVSDQ 223 (259)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEEcCHHHHH-HhCCE
Confidence 9999999998 99999999998887765553 56666666544 678899999877443 34556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 224 i~~l~ 228 (259)
T PRK14274 224 TAFFY 228 (259)
T ss_pred EEEEE
Confidence 65553
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-21 Score=189.99 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=141.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++++++.|++. +|+++||+| +|+|||||||||||++|+| .+..|+|+ ++|..+ .... ..+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~---i~g~~~----~~~~--~~~ 70 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL---LNGKDI----TNLP--PEK 70 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCEEc----CcCC--hhH
Confidence 4678999999865 899999999 9999999999999999954 57789999 888732 2111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++.........+..+.+..+++.+|+.+
T Consensus 71 ~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 121 (235)
T cd03299 71 RDISYVPQNYALFPHM------TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH----------------------- 121 (235)
T ss_pred cCEEEEeecCccCCCc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 5799999999999889 99999987632221222233334555666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 122 --------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 122 --------------------------------------------------------LLNRKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred --------------------------------------------------------HHhcCcccCCHHHHHHHHHHHHHH
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++++|||..|-+..+.. .+.+.|.+.... ++++++.+|+.+... .+..++.++.
T Consensus 146 ~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~~~~~~~~tili~tH~~~~~~-~~~d~i~~l~ 204 (235)
T cd03299 146 V------NPKILLLDEPFSALDVRTKE-----------KLREELKKIRKEFGVTVLHVTHDFEEAW-ALADKVAIML 204 (235)
T ss_pred c------CCCEEEECCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEE
Confidence 8 99999999998887665553 566667665443 788999999877532 3445555553
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-22 Score=176.11 Aligned_cols=204 Identities=13% Similarity=0.148 Sum_probs=145.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
++++++.+.-++..+|+++||.+ +|+|||||||||||+++ +..+++|.++ +.|+ .++......++
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~---f~Ge----~vs~~~pea~R 76 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL---FEGE----DVSTLKPEAYR 76 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE---EcCc----cccccChHHHH
Confidence 34556666667788999999999 99999999999999999 7788999999 9999 55555556778
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|+.|.+.||+. ||.+|+.|+-... .++....++...++.+++.+
T Consensus 77 q~VsY~~Q~paLfg~-------tVeDNlifP~~~r--~rr~dr~aa~~llar~~l~~----------------------- 124 (223)
T COG4619 77 QQVSYCAQTPALFGD-------TVEDNLIFPWQIR--NRRPDRAAALDLLARFALPD----------------------- 124 (223)
T ss_pred HHHHHHHcCcccccc-------chhhccccchHHh--ccCCChHHHHHHHHHcCCch-----------------------
Confidence 899999999999965 7999999972111 11122334445555555543
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
-+.+..+.++|||++|+.++.+.+.
T Consensus 125 -------------------------------------------------------~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 125 -------------------------------------------------------SILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred -------------------------------------------------------hhhcchhhhccchHHHHHHHHHHhh
Confidence 0223345678999999999999887
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEcCCCC
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 391 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIpvi~k 391 (541)
. -|+++++|||+...+.+|... |++.+..|+. ..++.+...+|+.|-..+-.+..+++.| |+
T Consensus 150 ~------~P~ILLLDE~TsALD~~nkr~-------ie~mi~~~v~---~q~vAv~WiTHd~dqa~rha~k~itl~~--G~ 211 (223)
T COG4619 150 F------MPKILLLDEITSALDESNKRN-------IEEMIHRYVR---EQNVAVLWITHDKDQAIRHADKVITLQP--GH 211 (223)
T ss_pred c------CCceEEecCchhhcChhhHHH-------HHHHHHHHhh---hhceEEEEEecChHHHhhhhheEEEecc--Cc
Confidence 6 799999999988777777653 3334455554 2355677788887744433444555554 45
Q ss_pred CCCC
Q psy91 392 GDSI 395 (541)
Q Consensus 392 ~D~l 395 (541)
++.+
T Consensus 212 ~~~~ 215 (223)
T COG4619 212 AGEM 215 (223)
T ss_pred cccc
Confidence 5544
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-21 Score=190.33 Aligned_cols=205 Identities=16% Similarity=0.124 Sum_probs=141.7
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~ 142 (541)
+.+.|.++|+++.|+++.+|+|+||+| +|+|||||||||||++|+|. + ..|+|. ++|..+.. .
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~~~~-~ 78 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL---YNGENIMD-S 78 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE---ECCEEccc-c
Confidence 445789999999999889999999999 99999999999999999653 2 379999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.......++.++|++|+..+++ . ||++|+.++...... ......+.+..+++.+|+...
T Consensus 79 -~~~~~~~~~~i~~~~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 138 (253)
T PRK14261 79 -GADVVALRRKIGMVFQRPNPFP-K------SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE------------ 138 (253)
T ss_pred -ccchhhhhceEEEEecCCccCc-c------cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh------------
Confidence 0011233457999999988775 6 899999876211111 112223344555555554210
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. . ..+..+..+|+|++
T Consensus 139 ---------------------------------------------------------l~-----~-~~~~~~~~LS~G~~ 155 (253)
T PRK14261 139 ---------------------------------------------------------VK-----D-RLHDSALSLSGGQQ 155 (253)
T ss_pred ---------------------------------------------------------hH-----H-HhhcChhhCCHHHH
Confidence 00 0 11234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.+++.+..+ ++++++.+|+.+... .+..
T Consensus 156 qrv~laral~~------~p~lllLDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tvii~sh~~~~~~-~~~d 216 (253)
T PRK14261 156 QRLCIARTLAV------NPEVILMDEPCSALDPIATA-----------KIEDLIEDLKK-EYTVIIVTHNMQQAA-RVSD 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhh-CceEEEEEcCHHHHH-hhCC
Confidence 99999999998 99999999998887665543 55566665544 478899999876543 2445
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 217 ~v~~l 221 (253)
T PRK14261 217 YTGFM 221 (253)
T ss_pred EEEEE
Confidence 55555
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-21 Score=191.13 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=141.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + .+|+|. ++|+.+.. . .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~---~~g~~~~~-~-~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV---YNGHNIYS-P-R 78 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE---ECCEECcC-c-c
Confidence 3689999999999888999999999 99999999999999999654 3 379999 88873311 0 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++||+|+..+++ . |+.||+.++....+.. .....+.+..+++.+|+...
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 137 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-M------SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------------- 137 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-C------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh--------------
Confidence 111233457999999988876 7 9999998752111111 11223344555555554210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.. ..++.+..+|+|++|+
T Consensus 138 -------------------------------------------------------~~~------~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 138 -------------------------------------------------------VKD------RLHDSALGLSGGQQQR 156 (252)
T ss_pred -------------------------------------------------------HHH------HHhcCcccCCHHHHHH
Confidence 000 1123455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+++.. ..+..++
T Consensus 157 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sH~~~~~-~~~~d~i 217 (252)
T PRK14239 157 VCIARVLAT------SPKIILLDEPTSALDPISAG-----------KIEETLLGLKD-DYTMLLVTRSMQQA-SRISDRT 217 (252)
T ss_pred HHHHHHHhc------CCCEEEEcCCccccCHHHHH-----------HHHHHHHHHhh-CCeEEEEECCHHHH-HHhCCEE
Confidence 999999998 99999999998887655543 55566665543 57889999987633 2355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 218 ~~l~ 221 (252)
T PRK14239 218 GFFL 221 (252)
T ss_pred EEEE
Confidence 6663
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-21 Score=209.09 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=144.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC----CCCCeeecccCCccceeccccccc-c
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD----LYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
++++|+++.|+++.+|++|||++ +|+|||||||||||++|+|.. .+|+|. ++|+.+ ..... .
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~---~~g~~~----~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIY---WSGSPL----KASNIRD 74 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE---ECCEEC----CCCCHHH
Confidence 67899999999888999999999 999999999999999996642 579999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc--c--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--Q--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
..++.+|||+|+..+++.+ |+.+|+.++.... . .......+++.++++.+|+.+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 132 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPEL------SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA---------------- 132 (500)
T ss_pred HHhCCEEEEeeccccCCCC------cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC----------------
Confidence 1235699999999999999 9999998762111 0 112222334555555555432
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
...++.+..+|+|++|++
T Consensus 133 --------------------------------------------------------------~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 133 --------------------------------------------------------------DNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred --------------------------------------------------------------CcccCchhhCCHHHHHHH
Confidence 111234567999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .++.++.
T Consensus 151 ~iA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tviiitHd~~~~~-~~~d~i~ 212 (500)
T TIGR02633 151 EIAKALNK------QARLLILDEPSSSLTEKETE-----------ILLDIIRDLKAHGVACVYISHKLNEVK-AVCDTIC 212 (500)
T ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCcHHHHH-HhCCEEE
Confidence 99999998 99999999998886655543 666777766556889999999977543 3555666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 213 ~l~ 215 (500)
T TIGR02633 213 VIR 215 (500)
T ss_pred EEe
Confidence 553
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-21 Score=186.73 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=135.6
Q ss_pred cccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEE
Q psy91 84 TLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGV 156 (541)
Q Consensus 84 ~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~ 156 (541)
+|+++|+++.+ |+||+| +|+|||||||||||++|+| .+.+|+|. ++|..+............++.++|
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIV---LNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCeee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEecccccchhhhhhHhhcEEE
Confidence 88999998876 999998 9999999999999999955 56789999 888732110000011123457999
Q ss_pred EeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC
Q psy91 157 VEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG 236 (541)
Q Consensus 157 V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~ 236 (541)
++|+..+++.+ |+.+|+.++.... ......+++..+++.+|+.+
T Consensus 80 ~~q~~~~~~~~------t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~---------------------------- 123 (214)
T cd03297 80 VFQQYALFPHL------NVRENLAFGLKRK--RNREDRISVDELLDLLGLDH---------------------------- 123 (214)
T ss_pred EecCCccCCCC------CHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHh----------------------------
Confidence 99999999888 9999998752111 11122334555566555432
Q ss_pred CCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec
Q psy91 237 SIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316 (541)
Q Consensus 237 ~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~ 316 (541)
..+..+..+|+|++|++.|+++++.
T Consensus 124 ---------------------------------------------------~~~~~~~~LS~G~~qrv~la~al~~---- 148 (214)
T cd03297 124 ---------------------------------------------------LLNRYPAQLSGGEKQRVALARALAA---- 148 (214)
T ss_pred ---------------------------------------------------HhhcCcccCCHHHHHHHHHHHHHhc----
Confidence 1122345689999999999999998
Q ss_pred CeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 317 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 317 gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..+.. .+.+++.+..+. +.++++.+|+.+... .+..++.++
T Consensus 149 --~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 205 (214)
T cd03297 149 --QPELLLLDEPFSALDRALRL-----------QLLPELKQIKKNLNIPVIFVTHDLSEAE-YLADRIVVM 205 (214)
T ss_pred --CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCcEEEEEecCHHHHH-HhcCEEEEE
Confidence 99999999998887655543 566666666544 788999999987543 344555554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-21 Score=190.45 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=141.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++||++.|+++.+|+|+||+| +|+|||||||||||++|+|. + .+|+|. ++|..+.. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~~~~--~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL---LDGQDIYK--SDI 77 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEccc--ccc
Confidence 578999999999888999999999 99999999999999999763 2 479999 88873211 001
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+..++|++|+..+++ . |+.+|+.++....+. ......+.+..++..+++...
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~------t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------- 135 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-M------SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE--------------- 135 (250)
T ss_pred chHHHhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh---------------
Confidence 11233457999999988877 7 999999876211111 112233445555555554210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+. . ..+..+..+|+|++|++
T Consensus 136 ------------------------------------------------------l~-----~-~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 136 ------------------------------------------------------VK-----D-RLKKSALGLSGGQQQRL 155 (250)
T ss_pred ------------------------------------------------------hH-----H-HHhcCCCCCCHHHHHHH
Confidence 00 0 11234557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .+..++.
T Consensus 156 ~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~~-~~~d~v~ 216 (250)
T PRK14240 156 CIARALAV------EPEVLLMDEPTSALDPISTL-----------KIEELIQELKK-DYTIVIVTHNMQQAS-RISDKTA 216 (250)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEEeCHHHHH-hhCCEEE
Confidence 99999999 99999999998887655543 56666666543 678999999877432 3455665
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 217 ~l~ 219 (250)
T PRK14240 217 FFL 219 (250)
T ss_pred EEE
Confidence 553
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-21 Score=187.89 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=138.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ... . .
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~~~~~----~~~---~-~ 69 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII---FDGHPW----TRK---D-L 69 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEec----ccc---c-c
Confidence 46889999998888999999999 9999999999999999965 56789999 777622 111 1 2
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+....... ....+..+++.+|+.+
T Consensus 70 ~~~~~~~q~~~~~~~~------t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~----------------------- 116 (223)
T TIGR03740 70 HKIGSLIESPPLYENL------TARENLKVHTTLLGL----PDSRIDEVLNIVDLTN----------------------- 116 (223)
T ss_pred ccEEEEcCCCCccccC------CHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcH-----------------------
Confidence 4689999999888888 999998765211111 1123445555555542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 117 --------------------------------------------------------~~~~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 117 --------------------------------------------------------TGKKKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred --------------------------------------------------------HHhhhHhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++++|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 141 ~------~p~llllDEP~~~LD~~~~~-----------~l~~~L~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 197 (223)
T TIGR03740 141 N------HPKLLILDEPTNGLDPIGIQ-----------ELRELIRSFPEQGITVILSSHILSEVQ-QLADHIGII 197 (223)
T ss_pred c------CCCEEEECCCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-HhcCEEEEE
Confidence 8 99999999998887665543 677777776556788999999877432 244444444
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-21 Score=189.52 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=141.3
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC--C-----CCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--L-----YGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~-----~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+|.. . .|+|. ++|..+.. .
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~~~~-~- 76 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL---LDNENIYS-P- 76 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEE---ECCEEccc-c-
Confidence 45689999999999888999999999 999999999999999996643 2 48999 77873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++||+|+..+++ . |+.||+.++....+.. .....+.+..++..+|+...
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------- 136 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFP-K------SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE------------- 136 (251)
T ss_pred ccChHHhhceEEEEecCCccCc-C------cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------------
Confidence 1111233567999999988775 6 8999998763211111 11222344445555554310
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
++. +.++.+..+|+|++|
T Consensus 137 --------------------------------------------------------l~~------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 137 --------------------------------------------------------VKD------NLHKSGLALSGGQQQ 154 (251)
T ss_pred --------------------------------------------------------hhh------HhhCCcccCCHHHHH
Confidence 000 113345679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+.. .+.++++.+|+++... .+..+
T Consensus 155 rv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~-~~~tilivsh~~~~~~-~~~d~ 215 (251)
T PRK14249 155 RLCIARVLAI------EPEVILMDEPCSALDPVSTM-----------RIEELMQELK-QNYTIAIVTHNMQQAA-RASDW 215 (251)
T ss_pred HHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHh-cCCEEEEEeCCHHHHH-hhCCE
Confidence 9999999998 99999999998887665543 5556666553 3678999999877543 34556
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 216 i~~l 219 (251)
T PRK14249 216 TGFL 219 (251)
T ss_pred EEEE
Confidence 6555
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-21 Score=189.00 Aligned_cols=201 Identities=16% Similarity=0.190 Sum_probs=138.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+++|++.|+++.+|++|||++ ||+|||||||||||++|+|. +..|+|+ ++|..+ .....
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~---~~g~~~----~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL---FKGESI----LDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEE---ECCEEc----ccCCh
Confidence 3589999999998888999999999 99999999999999999773 6789999 888732 21111
Q ss_pred cccc-ccEEEEeCCCccccccccccCCCcccceeccccccc-------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 148 RGRQ-YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 148 ~~~~-~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
..+. ..++|++|+..+++.+ ++.+++.+...... ....+....+..+++.+|+..
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------- 141 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGV------SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------- 141 (252)
T ss_pred hhhheeeEEEEeccccccccc------cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-----------
Confidence 1222 2478999999998888 88888765411100 000111122333343333320
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVND 298 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~ 298 (541)
...+..+. .+|+
T Consensus 142 -------------------------------------------------------------------~~~~~~~~~~LSg 154 (252)
T CHL00131 142 -------------------------------------------------------------------SFLSRNVNEGFSG 154 (252)
T ss_pred -------------------------------------------------------------------hhhccccccCCCH
Confidence 01122333 4899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhc
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERG 378 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~ 378 (541)
|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.++++++.+|+.+....-
T Consensus 155 G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tii~~tH~~~~~~~~ 217 (252)
T CHL00131 155 GEKKRNEILQMALL------DSELAILDETDSGLDIDALK-----------IIAEGINKLMTSENSIILITHYQRLLDYI 217 (252)
T ss_pred HHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 99999999999998 99999999998887655543 56667776655578999999987765432
Q ss_pred ccceeEEE
Q psy91 379 VKLRLTVV 386 (541)
Q Consensus 379 l~~rvnvI 386 (541)
...++.++
T Consensus 218 ~~d~i~~l 225 (252)
T CHL00131 218 KPDYVHVM 225 (252)
T ss_pred hCCEEEEE
Confidence 24566555
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-21 Score=206.51 Aligned_cols=195 Identities=21% Similarity=0.284 Sum_probs=134.3
Q ss_pred CCCCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+|+||+|.|+.+ +||+|+||+| |||||||+||||+.++| +..|.+|+|. ++|.++ .
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il---lDG~~i----~ 533 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL---LDGVPI----S 533 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE---ECCeeh----h
Confidence 466789999999999876 4999999999 99999999999999999 7889999999 899833 3
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......+++++|+|.|++.||. + |++|||.|+.. ..+.++....+ +..+-.+ -+..+
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs---~----sI~eNI~YG~~--~~t~e~i~~AA----k~ANah~--------FI~~~-- 590 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFS---G----SIRENIAYGLD--NATDEEIEAAA----KMANAHE--------FITNF-- 590 (716)
T ss_pred hcCHHHHHHHeeeeeccceeec---c----cHHHHHhcCCC--CCCHHHHHHHH----HHhChHH--------HHHhC--
Confidence 3333455678999999999994 3 89999999943 33333332221 1111110 00000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
++ ||.+ +||+.| ..+||||+||
T Consensus 591 p~------------------gY~T-------------------~VGEkG---------------------~qLSGGQKQR 612 (716)
T KOG0058|consen 591 PD------------------GYNT-------------------VVGEKG---------------------SQLSGGQKQR 612 (716)
T ss_pred cc------------------cccc-------------------ccCCcc---------------------ccccchHHHH
Confidence 00 0100 234444 3589999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++|||+++. +|+++|+||.+.-.+..++. ...+.|.. ...+||+++..|.+.-.
T Consensus 613 IAIARALlr------~P~VLILDEATSALDaeSE~-----------lVq~aL~~-~~~~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 613 IAIARALLR------NPRVLILDEATSALDAESEY-----------LVQEALDR-LMQGRTVLVIAHRLSTV 666 (716)
T ss_pred HHHHHHHhc------CCCEEEEechhhhcchhhHH-----------HHHHHHHH-hhcCCeEEEEehhhhHh
Confidence 999999999 99999999996654444442 22222222 22358988888775533
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-21 Score=202.16 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=154.0
Q ss_pred CCCceeeecccccccc-----------cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCc
Q psy91 76 DRDYIGFATLPEQVHR-----------KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~ 136 (541)
..+.+.++||++.|.. ..+++||||++ ||||+||||||||.++| +..|.+|.|. +.|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~---~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII---FDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---EeCc
Confidence 5578899999999973 25899999999 99999999999999999 4467889999 8887
Q ss_pred cceecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchh
Q psy91 137 NTVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
++ .......+..++.+-+|||++ .|.|.+ ||.+.+..+.. .......+..+++.++++.+||..
T Consensus 354 ~~--~~~~~~~~~~r~~~QmvFQdp~~SLnPr~------tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~----- 420 (539)
T COG1123 354 DL--DLTGGELRRLRRRIQMVFQDPYSSLNPRM------TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP----- 420 (539)
T ss_pred cc--ccccchhhhhhhheEEEEeCcccccCccc------cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-----
Confidence 41 222222334455778888874 789999 99988876622 122234556667899999999861
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
-+.++++
T Consensus 421 -------------------------------------------------------------------------~~l~ryP 427 (539)
T COG1123 421 -------------------------------------------------------------------------EFLDRYP 427 (539)
T ss_pred -------------------------------------------------------------------------HHHhcCc
Confidence 0234568
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeecccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKS 371 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~ 371 (541)
..+||||+||++|+++++. +|+++|+||| +..|..... ++.+.|.+.++ .+-+.++.+|+
T Consensus 428 ~elSGGQrQRvaIARALa~------~P~lli~DEp~SaLDvsvqa------------~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 428 HELSGGQRQRVAIARALAL------EPKLLILDEPVSALDVSVQA------------QVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred hhcCcchhHHHHHHHHHhc------CCCEEEecCCccccCHHHHH------------HHHHHHHHHHHHhCCEEEEEeCC
Confidence 8899999999999999998 9999999999 555543332 77777777765 48899999999
Q ss_pred chhhhhcccceeEEE
Q psy91 372 MDIEERGVKLRLTVV 386 (541)
Q Consensus 372 ~di~~~~l~~rvnvI 386 (541)
+++.. .++.++.+.
T Consensus 490 l~vV~-~i~drv~vm 503 (539)
T COG1123 490 LAVVR-YIADRVAVM 503 (539)
T ss_pred HHHHH-hhCceEEEE
Confidence 98765 367777665
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-21 Score=214.34 Aligned_cols=205 Identities=19% Similarity=0.142 Sum_probs=148.9
Q ss_pred CCceeeecccccccc-----------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcc
Q psy91 77 RDYIGFATLPEQVHR-----------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSN 137 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~ 137 (541)
.+.++++||++.|+. ..+|++|||+| ||+||||||||||+++|+| .+..|+|+ ++|+.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~---~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII---FNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE---ECCEE
Confidence 357999999999962 46999999999 9999999999999999955 57889999 88873
Q ss_pred ceecccccccccccccEEEEeCCC--ccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhh
Q psy91 138 TVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTL 214 (541)
Q Consensus 138 ~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l 214 (541)
+.. ......+.+++.++||+|+. .+++.+ ||.+++.++...... ...+..+++.++++.+|+..
T Consensus 388 i~~-~~~~~~~~~~~~i~~v~Q~~~~~l~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~------ 454 (623)
T PRK10261 388 IDT-LSPGKLQALRRDIQFIFQDPYASLDPRQ------TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP------ 454 (623)
T ss_pred CCc-CCHHHHHHhcCCeEEEecCchhhcCCCC------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH------
Confidence 321 11111122345799999996 588888 999998765211111 12233445666666666631
Q ss_pred hhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC
Q psy91 215 VNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 294 (541)
Q Consensus 215 ~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~ 294 (541)
...++.+.
T Consensus 455 ------------------------------------------------------------------------~~~~~~~~ 462 (623)
T PRK10261 455 ------------------------------------------------------------------------EHAWRYPH 462 (623)
T ss_pred ------------------------------------------------------------------------HHhhCCcc
Confidence 01234567
Q ss_pred CCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccch
Q psy91 295 NVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMD 373 (541)
Q Consensus 295 ~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~d 373 (541)
.+|+|++|++.|+++++. +++|+|+|||..|.+..... ++.+.|.+..+. +.++++.+|+++
T Consensus 463 ~LSgGqrQRv~iAraL~~------~p~llllDEPts~LD~~~~~-----------~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 463 EFSGGQRQRICIARALAL------NPKVIIADEAVSALDVSIRG-----------QIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred cCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 799999999999999998 99999999998886655543 777777776554 789999999987
Q ss_pred hhhhcccceeEEEc
Q psy91 374 IEERGVKLRLTVVD 387 (541)
Q Consensus 374 i~~~~l~~rvnvIp 387 (541)
... .++.++.++.
T Consensus 526 ~v~-~~~dri~vl~ 538 (623)
T PRK10261 526 VVE-RISHRVAVMY 538 (623)
T ss_pred HHH-HhCCEEEEEE
Confidence 553 4666776663
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-21 Score=186.45 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=139.1
Q ss_pred ceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.++++++++.|++ +.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ ......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL---LDGTDI----RQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE---ECCEEh----HHCCHH
Confidence 3688999999975 56999999999 9999999999999999955 46789999 888732 111111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++|++|+..+++ . |+.||+.+..... ....+..+++.+|+.+..+.. ..++.
T Consensus 75 ~~~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~----~~~~~------ 131 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-G------TLRDNITLGAPLA------DDERILRAAELAGVTDFVNKH----PNGLD------ 131 (220)
T ss_pred HHHhhEEEeCCCCcccc-c------hHHHHhhcCCCCC------CHHHHHHHHHHcCcHHHHHhc----ccccc------
Confidence 23457999999987765 6 8999987752111 112344556666654311110 00000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
. .....+..+|+|++|++.|++
T Consensus 132 --------------------------------------------------------~--~~~~~~~~LSgG~~qrl~la~ 153 (220)
T cd03245 132 --------------------------------------------------------L--QIGERGRGLSGGQRQAVALAR 153 (220)
T ss_pred --------------------------------------------------------c--eecCCCccCCHHHHHHHHHHH
Confidence 0 011234579999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..... .+.+.|.+..+. .++++.+|+.++. .+..++.++
T Consensus 154 al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~-~tii~~sH~~~~~--~~~d~v~~l 211 (220)
T cd03245 154 ALLN------DPPILLLDEPTSAMDMNSEE-----------RLKERLRQLLGD-KTLIIITHRPSLL--DLVDRIIVM 211 (220)
T ss_pred HHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhcCC-CEEEEEeCCHHHH--HhCCEEEEE
Confidence 9998 99999999998887766553 566666665543 7889999998864 366676665
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-21 Score=187.00 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=135.5
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--C---CCCCCeeecccCCccceeccc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--S---DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~---~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.++|+++.|++ +.+|+++||+| +|+||||||||||+++|++ . +.+|+|. ++|..+ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~---~~g~~~----~ 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL---FNGQPR----K 75 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE---ECCEEC----C
Confidence 4568889999964 57999999999 9999999999999999955 3 5789999 888722 2
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc---hhhHhHhhhHHH-HHHHhCCCCccchhhhhhhc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ---VHRKSVKKGFDF-TLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~---~~~~e~~~~v~~-~L~~vGL~g~~ks~l~~~l~ 219 (541)
. ...++.++|++|+..+++.+ |+.||+.++..... .........+.. .+.
T Consensus 76 ~---~~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------- 129 (226)
T cd03234 76 P---DQFQKCVAYVRQDDILLPGL------TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR----------------- 129 (226)
T ss_pred h---HHhcccEEEeCCCCccCcCC------cHHHHHHHHHHhhcccccchHHHHHHHHHHHHH-----------------
Confidence 1 13456799999999999999 99999987521100 000000011111 121
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
.+.... +.++.+..+|+|
T Consensus 130 -------------------------------------------------------------~~~l~~-~~~~~~~~LS~G 147 (226)
T cd03234 130 -------------------------------------------------------------DLALTR-IGGNLVKGISGG 147 (226)
T ss_pred -------------------------------------------------------------hhcchh-hhcccccCcCHH
Confidence 111111 223456679999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l 379 (541)
++|++.|+++++. +++++|+|||..|-+..... .+.+.+.+..+.+.++++.+|+...+...+
T Consensus 148 ~~qrl~laral~~------~p~illlDEP~~gLD~~~~~-----------~~~~~l~~~~~~~~tiii~sh~~~~~~~~~ 210 (226)
T cd03234 148 ERRRVSIAVQLLW------DPKVLILDEPTSGLDSFTAL-----------NLVSTLSQLARRNRIVILTIHQPRSDLFRL 210 (226)
T ss_pred HHHHHHHHHHHHh------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCCCHHHHHh
Confidence 9999999999998 99999999998887655543 666667666555789999999873222234
Q ss_pred cceeEEE
Q psy91 380 KLRLTVV 386 (541)
Q Consensus 380 ~~rvnvI 386 (541)
+.++.++
T Consensus 211 ~d~i~~l 217 (226)
T cd03234 211 FDRILLL 217 (226)
T ss_pred CCEEEEE
Confidence 5555554
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-21 Score=187.61 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=136.7
Q ss_pred eeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|.++|+++.|+++ .+|+++||++ +|+|||||||||||++|+| .+.+|+|+ ++|..+ .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL---IDGHDV----RDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEE---ECCEEh----hhCCHHH
Confidence 4688999999765 7999999999 9999999999999999955 47789999 888732 1111122
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++ . |+.||+.+..... .. ..+...+...++..
T Consensus 74 ~~~~i~~~~q~~~~~~-~------tv~enl~~~~~~~--~~----~~~~~~~~~~~~~~--------------------- 119 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-D------TVAENIAYGRPGA--TR----EEVEEAARAANAHE--------------------- 119 (234)
T ss_pred HHhhEEEeCCCCeecc-c------cHHHHhhccCCCC--CH----HHHHHHHHHcCcHH---------------------
Confidence 3457999999987764 6 9999998763211 11 11222222222211
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEEe
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+++.+ .... ..+..+..+|+|++|++.|+
T Consensus 120 ------------------------------------------------~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la 150 (234)
T cd03251 120 ------------------------------------------------FIMELPEGYDT-VIGERGVKLSGGQRQRIAIA 150 (234)
T ss_pred ------------------------------------------------HHHhcccCcce-eeccCCCcCCHHHHHHHHHH
Confidence 11111 0011 12334667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+.... ..++.++.
T Consensus 151 ~al~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~v~~l~ 210 (234)
T cd03251 151 RALLK------DPPILILDEATSALDTESER-----------LVQAALERLMK-NRTTFVIAHRLSTIEN--ADRIVVLE 210 (234)
T ss_pred HHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEecCHHHHhh--CCEEEEec
Confidence 99999 99999999998887766553 56666666644 7889999999876543 66666653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-21 Score=191.16 Aligned_cols=206 Identities=16% Similarity=0.103 Sum_probs=140.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
..+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|+.+..
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~-- 92 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL---YEGLNILD-- 92 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE---ECCEEccc--
Confidence 345689999999999889999999999 99999999999999999663 4689999 88873211
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++|++|+..+++ . |+.+|+.++...... ......+.+..++..+|+...
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 153 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFP-K------SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE------------ 153 (268)
T ss_pred ccccHHHHhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc------------
Confidence 01111223457999999987765 5 899998765211111 111112233444444443210
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. . ..+..+..+|+|++
T Consensus 154 ---------------------------------------------------------~~-----~-~~~~~~~~LSgGq~ 170 (268)
T PRK14248 154 ---------------------------------------------------------VK-----D-RLHSSALSLSGGQQ 170 (268)
T ss_pred ---------------------------------------------------------hH-----H-HHhcCcccCCHHHH
Confidence 00 0 11234567999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+... .++.
T Consensus 171 qrl~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~~~-~~~d 231 (268)
T PRK14248 171 QRLCIARTLAM------KPAVLLLDEPASALDPISNA-----------KIEELITELKE-EYSIIIVTHNMQQAL-RVSD 231 (268)
T ss_pred HHHHHHHHHhC------CCCEEEEcCCCcccCHHHHH-----------HHHHHHHHHhc-CCEEEEEEeCHHHHH-HhCC
Confidence 99999999998 99999999998887655543 55566665543 578889999977432 3455
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 232 ~v~~l~ 237 (268)
T PRK14248 232 RTAFFL 237 (268)
T ss_pred EEEEEE
Confidence 666653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-21 Score=189.47 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=141.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + ..|+|. ++|..+.. . .
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---~~g~~~~~-~-~ 76 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR---IDGRNIYD-K-G 76 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE---ECCEeccc-c-c
Confidence 3578999999999888999999999 99999999999999999652 2 379999 88873211 0 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.+|+.++....... .....+.+..+++.+|+...-.
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------ 137 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-K------SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK------------ 137 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-c------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh------------
Confidence 111233457999999987775 6 8999998752111111 1222344556666666532000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ..+..+..+|+|++|+
T Consensus 138 --------------------------------------------------------------~-~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 138 --------------------------------------------------------------D-KLKESAFALSGGQQQR 154 (250)
T ss_pred --------------------------------------------------------------h-hhhCCcccCCHHHHHH
Confidence 0 1123355689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+.. .++++++.+|+.+... ++..++
T Consensus 155 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~-~~~tiiivtH~~~~~~-~~~d~v 215 (250)
T PRK14245 155 LCIARAMAV------SPSVLLMDEPASALDPISTA-----------KVEELIHELK-KDYTIVIVTHNMQQAA-RVSDKT 215 (250)
T ss_pred HHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHh-cCCeEEEEeCCHHHHH-hhCCEE
Confidence 999999998 99999999998887665543 5666666653 3678899999877433 355566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~l~ 219 (250)
T PRK14245 216 AFFY 219 (250)
T ss_pred EEEE
Confidence 6553
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-21 Score=189.77 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=141.2
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~~~---~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT---MDGEDIY---GNI 76 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE---ECCEEcc---ccc
Confidence 578999999999889999999999 999999999999999996542 479999 8887321 011
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++ . |+.+|+.++...... ......+++..+++.+|+.....
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------- 136 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-M------SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK------------- 136 (249)
T ss_pred chHHHHhheeEEecCCCcCc-c------cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------------
Confidence 12233457999999988886 7 999999876211111 11222334555565555532000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ ..+..+..+|+|++|++
T Consensus 137 -------------------------------------------------------------~-~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 137 -------------------------------------------------------------D-RLKSHAFGLSGGQQQRL 154 (249)
T ss_pred -------------------------------------------------------------H-HhhcCcccCCHHHHHHH
Confidence 0 11233557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+.. ..+..++.
T Consensus 155 ~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~-~~~~d~i~ 215 (249)
T PRK14253 155 CIARTIAM------EPDVILMDEPTSALDPIATH-----------KIEELMEELKK-NYTIVIVTHSMQQA-RRISDRTA 215 (249)
T ss_pred HHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEecCHHHH-HHhCCEEE
Confidence 99999998 99999999998887655443 66667776654 47889999987743 33555666
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 216 ~l 217 (249)
T PRK14253 216 FF 217 (249)
T ss_pred EE
Confidence 55
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-21 Score=187.86 Aligned_cols=189 Identities=21% Similarity=0.225 Sum_probs=132.1
Q ss_pred ccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 87 EQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 87 ~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+.|+.+++|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ...++.++|++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~~----~~~~-~~~~~~i~~~~ 100 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR---VAGLVP----WKRR-KKFLRRIGVVF 100 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCEEc----cccc-hhhcccEEEEc
Confidence 5677788999999999 9999999999999999965 47789999 777622 1111 23345789998
Q ss_pred -CCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCC
Q psy91 159 -GSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS 237 (541)
Q Consensus 159 -Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~ 237 (541)
|...+++.+ |+.+|+.+.....+....+..+.+..+++.+|+..
T Consensus 101 ~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------------------- 145 (236)
T cd03267 101 GQKTQLWWDL------PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEE----------------------------- 145 (236)
T ss_pred CCccccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------------
Confidence 556777888 99999876521111222223334445555555432
Q ss_pred CCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 238 IPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 238 ~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
..+..+..+|+|++|++.|+++++.
T Consensus 146 --------------------------------------------------~~~~~~~~LS~G~~qrl~la~al~~----- 170 (236)
T cd03267 146 --------------------------------------------------LLDTPVRQLSLGQRMRAEIAAALLH----- 170 (236)
T ss_pred --------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 1122345689999999999999998
Q ss_pred eeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 318 v~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|.+..... .+.++|.+..+ .++++++.+|+.+... .+..++.++
T Consensus 171 -~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiiivsH~~~~~~-~~~d~i~~l 227 (236)
T cd03267 171 -EPEILFLDEPTIGLDVVAQE-----------NIRNFLKEYNRERGTTVLLTSHYMKDIE-ALARRVLVI 227 (236)
T ss_pred -CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhcCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99999999998887665543 66777776654 3788999999987432 344454444
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-21 Score=191.51 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=139.8
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.|.+++|++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+.. ..
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~---i~G~~i~~-~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT---FRGKNVYD-AD 112 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE---ECCEEccc-cc
Confidence 45689999999999888999999999 99999999999999999664 4689999 88873211 01
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++||+|+..+++ . |+.+|+.+.....+... ...+.+..+++.+|+....
T Consensus 113 -~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i------------- 170 (285)
T PRK14254 113 -VDPVALRRRIGMVFQKPNPFP-K------SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEV------------- 170 (285)
T ss_pred -cchHhhhccEEEEecCCccCc-C------CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchh-------------
Confidence 111223457999999987665 5 89999876521111111 2233455666666653200
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. + ..+..+..+|+|++|+
T Consensus 171 --------------------------------------------------------~-----~-~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 171 --------------------------------------------------------K-----D-QLDSSGLDLSGGQQQR 188 (285)
T ss_pred --------------------------------------------------------H-----H-HHhCCcccCCHHHHHH
Confidence 0 0 1123456799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+.+... .+..++
T Consensus 189 v~LAraL~~------~p~lLLLDEPts~LD~~~~~-----------~l~~~L~~~~~-~~tiii~tH~~~~i~-~~~dri 249 (285)
T PRK14254 189 LCIARAIAP------DPEVILMDEPASALDPVATS-----------KIEDLIEELAE-EYTVVIVTHNMQQAA-RISDKT 249 (285)
T ss_pred HHHHHHHHc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-hhcCEE
Confidence 999999998 99999999998887665543 55566665544 368889999877543 244553
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-21 Score=192.67 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=142.5
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
..+.+.++++++.|+++.+|+|+||+| +|+|||||||||||++|+|. +..|+|. ++|..+.. .
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~---~~g~~i~~-~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM---FDGEDIYG-K 111 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE---ECCEEhhh-c
Confidence 345789999999998888999999999 99999999999999999763 3789999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
......+++.++||+|+..+++ . |+.||+.++...... ......+.+..+++.+|+...
T Consensus 112 -~~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 171 (286)
T PRK14275 112 -FTDEVLLRKKIGMVFQKPNPFP-K------SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE------------ 171 (286)
T ss_pred -ccchHHhhhcEEEECCCCCCCc-c------CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc------------
Confidence 0111123557999999987765 5 899999876211111 112223345555665554310
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+ .+ ..+..+..+|+|++
T Consensus 172 ---------------------------------------------------------l-----~~-~~~~~~~~LSgGq~ 188 (286)
T PRK14275 172 ---------------------------------------------------------V-----SD-RLDKNALGLSGGQQ 188 (286)
T ss_pred ---------------------------------------------------------h-----hh-HhhCChhhCCHHHH
Confidence 0 00 11234567899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+ ++++++.+|+.+... .+..
T Consensus 189 qrv~LAraL~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~L~~~~~-~~tvIivsH~~~~~~-~~~d 249 (286)
T PRK14275 189 QRLCVARTLAV------EPEILLLDEPTSALDPKATA-----------KIEDLIQELRG-SYTIMIVTHNMQQAS-RVSD 249 (286)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCC
Confidence 99999999999 99999999998887665543 55566665544 478899999877543 3455
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 250 ~i~~L~ 255 (286)
T PRK14275 250 YTMFFY 255 (286)
T ss_pred EEEEEE
Confidence 555553
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-21 Score=189.46 Aligned_cols=208 Identities=18% Similarity=0.148 Sum_probs=146.7
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc--cc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA--GT 145 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~--~~ 145 (541)
..+.+.+++++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|++.....+ ..
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~---~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK---VDGKVLYFGKDIFQI 83 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCcee---EcCEEEECCcccccC
Confidence 346799999999999999999999999 9999999999999999955 45688888 77763321111 11
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+..++|++|+..+++.+ |+.+|+.++...... ...+..+++..+++.+|+.....
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------- 144 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHL------SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY------------- 144 (257)
T ss_pred CHHHHhcceEEEccCCccCCCC------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------------
Confidence 1122345799999999999888 999999876211111 22333455666777766643100
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ ..+..+..+|+|++|++
T Consensus 145 -------------------------------------------------------------~-~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 145 -------------------------------------------------------------D-RLNSPASQLSGGQQQRL 162 (257)
T ss_pred -------------------------------------------------------------h-hhcCCcccCCHHHHHHH
Confidence 0 01123456899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+|+++++. +|+++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... +++.++.
T Consensus 163 ~laral~~------~P~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiilvsh~~~~~~-~~~d~v~ 223 (257)
T PRK14246 163 TIARALAL------KPKVLLMDEPTSMIDIVNSQ-----------AIEKLITELKN-EIAIVIVSHNPQQVA-RVADYVA 223 (257)
T ss_pred HHHHHHHc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CcEEEEEECCHHHHH-HhCCEEE
Confidence 99999999 99999999998887665543 56666665543 578999999977443 3445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 224 ~l 225 (257)
T PRK14246 224 FL 225 (257)
T ss_pred EE
Confidence 55
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-21 Score=189.17 Aligned_cols=204 Identities=14% Similarity=0.139 Sum_probs=140.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|++++|+.+.+|+++||+| +|+|||||||||||++|+|.. ..|+|. ++|..+.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~---i~g~~~~~--~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK---FEGQNIYG--SK 77 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEE---ECCEEccc--cc
Confidence 4689999999999889999999999 999999999999999996642 589999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.+|+.++....+.. .....+.+..+++.+|+....
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------- 137 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-F------SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET------------- 137 (251)
T ss_pred chHHHhhccEEEEecCCccCC-C------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------------
Confidence 111233457999999988774 6 9999998752111111 111223445555555553100
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ...+..+..+|+|++|+
T Consensus 138 -------------------------------------------------------------~-~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 138 -------------------------------------------------------------K-DNLDRNAQAFSGGQQQR 155 (251)
T ss_pred -------------------------------------------------------------H-HHhccChhhCCHHHHHH
Confidence 0 01123455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... .+..++
T Consensus 156 ~~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiiiisH~~~~~~-~~~d~i 216 (251)
T PRK14251 156 ICIARALAV------RPKVVLLDEPTSALDPISSS-----------EIEETLMELKH-QYTFIMVTHNLQQAG-RISDQT 216 (251)
T ss_pred HHHHHHHhc------CCCEEEecCCCccCCHHHHH-----------HHHHHHHHHHc-CCeEEEEECCHHHHH-hhcCEE
Confidence 999999998 99999999998876655443 55566665533 578899999877432 244555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 217 ~~l~ 220 (251)
T PRK14251 217 AFLM 220 (251)
T ss_pred EEEE
Confidence 5553
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-21 Score=189.56 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=137.7
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee-ccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI-EVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~-~~~~~~~ 147 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..... .+.....
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH---YRMRDGQLRDLYALSE 80 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCccccccccccCCH
Confidence 34689999999998888999999999 9999999999999999955 47789999 77763000 0111111
Q ss_pred c----cccccEEEEeCCCc--cccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 148 R----GRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 148 ~----~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
. .+++.++||+|+.. +++.+ ++.+|+.+...... .........+.++++.+|+..
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------ 142 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPRDGLRMQV------SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA------------ 142 (258)
T ss_pred HHHHHHhhcceEEEeeCcccccCccc------cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh------------
Confidence 1 12456999999963 55666 77777754310000 011122233444444444321
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
...+..+..+|+|+
T Consensus 143 ------------------------------------------------------------------~~~~~~~~~LS~Gq 156 (258)
T PRK11701 143 ------------------------------------------------------------------ARIDDLPTTFSGGM 156 (258)
T ss_pred ------------------------------------------------------------------hHHhCCCccCCHHH
Confidence 01123456789999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l 379 (541)
+|++.|+++++. +++++|+|||..|.+..... .+.+++.+..+. +.++++.+|+.+.... +
T Consensus 157 ~qrl~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~isH~~~~~~~-~ 218 (258)
T PRK11701 157 QQRLQIARNLVT------HPRLVFMDEPTGGLDVSVQA-----------RLLDLLRGLVRELGLAVVIVTHDLAVARL-L 218 (258)
T ss_pred HHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEeCCHHHHHH-h
Confidence 999999999998 99999999998887655543 556666655443 7889999999876542 3
Q ss_pred cceeEEE
Q psy91 380 KLRLTVV 386 (541)
Q Consensus 380 ~~rvnvI 386 (541)
..++.++
T Consensus 219 ~d~i~~l 225 (258)
T PRK11701 219 AHRLLVM 225 (258)
T ss_pred cCEEEEE
Confidence 4455544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-21 Score=186.95 Aligned_cols=198 Identities=17% Similarity=0.208 Sum_probs=136.9
Q ss_pred ceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.++++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|..+ .......
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL---IDGIDI----RDISRKS 74 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCEeH----HHcCHHH
Confidence 4789999999975 57999999999 9999999999999999955 46789999 888622 2111223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++ . |+.+|+.+..... ....+..++..+++...
T Consensus 75 ~~~~i~~~~q~~~~~~-~------tv~~~~~~~~~~~------~~~~~~~~~~~~~l~~~-------------------- 121 (229)
T cd03254 75 LRSMIGVVLQDTFLFS-G------TIMENIRLGRPNA------TDEEVIEAAKEAGAHDF-------------------- 121 (229)
T ss_pred HhhhEEEecCCchhhh-h------HHHHHHhccCCCC------CHHHHHHHHHHhChHHH--------------------
Confidence 3456999999977654 5 8899988762111 11223334444444221
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc--ccccCCCCCCCCCCCCCCcceEEe
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~--~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
++.+. ... ..+..+..+|+|++|++.|+
T Consensus 122 -------------------------------------------------~~~~~~~~~~-~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 122 -------------------------------------------------IMKLPNGYDT-VLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred -------------------------------------------------HHhCcccccC-HhhcCCCcCCHHHHHHHHHH
Confidence 11110 000 11233567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|.+..... .+.++|.+.. .++++++.+|+.+... .+.++.++
T Consensus 152 ~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~-~~~tii~~sh~~~~~~--~~d~i~~l 210 (229)
T cd03254 152 RAMLR------DPKILILDEATSNIDTETEK-----------LIQEALEKLM-KGRTSIIIAHRLSTIK--NADKILVL 210 (229)
T ss_pred HHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEecCHHHHh--hCCEEEEE
Confidence 99999 99999999998887765543 5566666554 3788999999987654 25666655
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=189.53 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=142.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
++.+.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+. .
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~---~~g~~i~---~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL---LGGRSIF---N 92 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE---ECCEEcc---c
Confidence 45789999999999999999999999 99999999999999999664 2589999 8887321 1
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++..... ....+....+..+++.+|+.....
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 154 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFP-M------SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK----------- 154 (276)
T ss_pred cchhHHHhhheEEeccCCccCC-c------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-----------
Confidence 1111233457999999988877 7 99999987621111 122223333445555555532100
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ ..+..+..+|+|++|
T Consensus 155 ------------------------------------------------------~----------~l~~~~~~LSgGq~q 170 (276)
T PRK14271 155 ------------------------------------------------------D----------RLSDSPFRLSGGQQQ 170 (276)
T ss_pred ------------------------------------------------------h----------HhhCCcccCCHHHHH
Confidence 0 012235568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ..++++.+|+.+... .+..+
T Consensus 171 rl~LAral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tiiivsH~~~~~~-~~~dr 231 (276)
T PRK14271 171 LLCLARTLAV------NPEVLLLDEPTSALDPTTTE-----------KIEEFIRSLAD-RLTVIIVTHNLAQAA-RISDR 231 (276)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998886655543 55566665544 478899999887433 34456
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 232 i~~l~ 236 (276)
T PRK14271 232 AALFF 236 (276)
T ss_pred EEEEE
Confidence 65553
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-21 Score=210.46 Aligned_cols=187 Identities=20% Similarity=0.240 Sum_probs=134.3
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++||+++|++ +++|+|+||+| ||+||||||||||+++| ...+.+|+|. ++|. ++... ..
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~---i~g~----~i~~~-~~ 404 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT---LDGV----SVSSL-QD 404 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCE----EhhhH-HH
Confidence 45999999999975 56999999999 99999999999999999 4467889999 8887 33333 44
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+|+. |++||+.++. +. ...+++.++++.+|+...-.+.. .|++.
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-------TI~eNI~~g~-~~-----~~~e~i~~al~~a~l~~~i~~lp----~GldT----- 462 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-------TVRDNLRLGR-PD-----ATDEELWAALERVGLADWLRSLP----DGLDT----- 462 (529)
T ss_pred HHHhheEEEccCcccccc-------cHHHHHhccC-CC-----CCHHHHHHHHHHcCCHHHHHhCc----ccccc-----
Confidence 566789999999999843 8999999973 11 12334566777777654211100 00000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+|+. -..+||||+||++|+|
T Consensus 463 --------------------------------------~ige~---------------------G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 463 --------------------------------------VLGEG---------------------GARLSGGERQRLALAR 483 (529)
T ss_pred --------------------------------------hhccc---------------------cCcCCHHHHHHHHHHH
Confidence 01221 2358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
+.+. +++++|+|||+.+-+..++. .+.+.+.+. ..++|+++.+|.
T Consensus 484 all~------~~~iliLDE~TSaLD~~te~-----------~I~~~l~~~-~~~~TvIiItHr 528 (529)
T TIGR02868 484 ALLA------DAPILLLDEPTEHLDAGTES-----------ELLEDLLAA-LSGKTVVVITHH 528 (529)
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHh-cCCCEEEEEecC
Confidence 9999 99999999997765554443 455555432 356888888875
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-21 Score=188.21 Aligned_cols=203 Identities=14% Similarity=0.136 Sum_probs=142.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+.. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---i~g~~~~~--~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY---FKGQDIYD--PQL 77 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE---ECCEEccc--chh
Confidence 578999999999888999999998 99999999999999999663 2679999 88873211 001
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++ . |+++|+.++...... ......+.+..+++.+|+....
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------------- 136 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-M------SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------------- 136 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-c------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--------------
Confidence 11223457999999988876 7 999999875221111 1122333455566666653200
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.. ..+..+..+|+|++|++
T Consensus 137 -------------------------------------------------------~~------~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 137 -------------------------------------------------------KS------ELNKPGTRLSGGQQQRL 155 (250)
T ss_pred -------------------------------------------------------HH------HHhCChhhcCHHHHHHH
Confidence 00 11234556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .+..++.
T Consensus 156 ~la~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tili~sH~~~~~~-~~~d~i~ 216 (250)
T PRK14262 156 CIARALAV------EPEVILLDEPTSALDPIATQ-----------RIEKLLEELSE-NYTIVIVTHNIGQAI-RIADYIA 216 (250)
T ss_pred HHHHHHhC------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHhc-CcEEEEEeCCHHHHH-HhCCEEE
Confidence 99999998 99999999998886655543 56666666544 578899999877332 3455666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 217 ~l~ 219 (250)
T PRK14262 217 FMY 219 (250)
T ss_pred EEE
Confidence 653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-21 Score=226.36 Aligned_cols=216 Identities=18% Similarity=0.221 Sum_probs=154.1
Q ss_pred Ccccccccc-cccccccCCCCCCCCCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC
Q psy91 52 SPHCLTFPE-AYRIKMTPDGGSCATDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL 124 (541)
Q Consensus 52 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~ 124 (541)
.|..++|.| +|.|..+.. .++.+..++.+.+|+|||+.+ ||+|||||||||||++|+|...
T Consensus 864 ~~~~~~~~~v~y~v~~~~~------------~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~ 931 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAE------------MKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 931 (1470)
T ss_pred CcceEEEEEEEEEEccCcc------------ccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence 355688898 888865431 112233445668999999999 9999999999999999987754
Q ss_pred ----CCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceeccc---cccchhhHhHhhhH
Q psy91 125 ----YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT---LPEQVHRKSVKKGF 197 (541)
Q Consensus 125 ----~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~e~~~~v 197 (541)
.|+|. ++|.. ... ...++.+|||+|++.+++.+ ||+|++.|+. ++...+..+..+.+
T Consensus 932 ~g~~~G~I~---inG~~----~~~---~~~~~~igyv~Q~d~~~~~l------TV~E~L~~~a~lr~~~~~~~~~~~~~v 995 (1470)
T PLN03140 932 GGYIEGDIR---ISGFP----KKQ---ETFARISGYCEQNDIHSPQV------TVRESLIYSAFLRLPKEVSKEEKMMFV 995 (1470)
T ss_pred CCcccceEE---ECCcc----CCh---HHhhhheEEEccccccCCCC------cHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 46676 66651 111 12345689999999999999 9999999862 23333344555678
Q ss_pred HHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHH
Q psy91 198 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKST 277 (541)
Q Consensus 198 ~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT 277 (541)
+++++.+|+.++.++.++
T Consensus 996 ~~vl~~lgL~~~~~~~vg-------------------------------------------------------------- 1013 (1470)
T PLN03140 996 DEVMELVELDNLKDAIVG-------------------------------------------------------------- 1013 (1470)
T ss_pred HHHHHHCCChhHhCCccC--------------------------------------------------------------
Confidence 888999888764322111
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
...+..+|+|++|+++|+++++. +|+++++|||+.|.+..... .+.+.|.+
T Consensus 1014 ------------~~~~~~LSgGerkRvsIa~aL~~------~P~lL~LDEPTsgLD~~~a~-----------~v~~~L~~ 1064 (1470)
T PLN03140 1014 ------------LPGVTGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAA-----------IVMRTVRN 1064 (1470)
T ss_pred ------------CCCCCCcCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHH
Confidence 00123589999999999999999 99999999998887655443 66667777
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.++++++.+|+...+......++.++
T Consensus 1065 l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1065 TVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 66678999999999875433344455444
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-21 Score=189.21 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=143.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||+| +|+|+|||||||||++|+|.. .+|+|. ++|..+.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~---~~g~~i~~--~~ 80 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD---FFGQNIYD--PR 80 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE---ECCEeccc--cc
Confidence 4689999999999888999999999 999999999999999996632 379999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......+..++|++|+..+++ . |+.||+.++..... .......+.+..++..+|+...
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 139 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP-M------SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE-------------- 139 (259)
T ss_pred cchHhhhhheEEEecccccCC-c------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch--------------
Confidence 111233457999999988886 7 99999987521111 1222233445555666655320
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+. . ..+..+..+|+|++|+
T Consensus 140 -------------------------------------------------------l~-----~-~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 140 -------------------------------------------------------VK-----D-KLNKSALGLSGGQQQR 158 (259)
T ss_pred -------------------------------------------------------hh-----h-HhcCCcccCCHHHHHH
Confidence 00 0 1123455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+++... .+..++
T Consensus 159 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~i~-~~~d~i 219 (259)
T PRK14260 159 LCIARALAI------KPKVLLMDEPCSALDPIATM-----------KVEELIHSLRS-ELTIAIVTHNMQQAT-RVSDFT 219 (259)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhcCeE
Confidence 999999998 99999999998886655543 56666666544 578999999877543 355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 220 ~~l~ 223 (259)
T PRK14260 220 AFFS 223 (259)
T ss_pred EEEe
Confidence 6663
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-20 Score=204.59 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=143.5
Q ss_pred Cceeeeccccccc---ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC---CCCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQVH---RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS---DLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~~---~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~---~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+.+.++||++.|+ ++.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|+.+.. ..
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~---~~g~~~~~---~~ 331 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF---IDGKPVKI---RN 331 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE---ECCEECCC---CC
Confidence 4689999999994 467999999999 99999999999999999664 3789999 88873211 01
Q ss_pred ccccccccEEEEeCCC---ccccccccccCCCcccceecccccc--c---hhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 146 KVRGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPE--Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~--~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.....+..++||+|+. .+++.+ |+.+|+.++.... . .......+++..+++.+|+..
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 396 (506)
T PRK13549 332 PQQAIAQGIAMVPEDRKRDGIVPVM------GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT--------- 396 (506)
T ss_pred HHHHHHCCCEEeCcchhhCCCcCCC------CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC---------
Confidence 1112244689999985 477888 9999998752110 0 011222234455555555421
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
...++.+..+|
T Consensus 397 ---------------------------------------------------------------------~~~~~~~~~LS 407 (506)
T PRK13549 397 ---------------------------------------------------------------------ASPELAIARLS 407 (506)
T ss_pred ---------------------------------------------------------------------CCcccccccCC
Confidence 02234566799
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+|++|++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+++...
T Consensus 408 gG~kqrv~lA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tvi~~sHd~~~~~- 469 (506)
T PRK13549 408 GGNQQKAVLAKCLLL------NPKILILDEPTRGIDVGAKY-----------EIYKLINQLVQQGVAIIVISSELPEVL- 469 (506)
T ss_pred HHHHHHHHHHHHHhh------CCCEEEEcCCCCCcCHhHHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHH-
Confidence 999999999999998 99999999998887766553 666677766566889999999987543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 470 ~~~d~v~~l 478 (506)
T PRK13549 470 GLSDRVLVM 478 (506)
T ss_pred HhCCEEEEE
Confidence 355555555
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-21 Score=186.53 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=134.8
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|.++|+++.|+. +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL---VDGHDL----ALADPAW 73 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCeeh----HhcCHHH
Confidence 468899999963 57999999999 9999999999999999955 47789999 888732 1111122
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..++ .. ||.+|+.+.... .. ...+...++..++..
T Consensus 74 ~~~~i~~~~q~~~~~-~~------tv~~nl~~~~~~--~~----~~~~~~~~~~~~~~~--------------------- 119 (237)
T cd03252 74 LRRQVGVVLQENVLF-NR------SIRDNIALADPG--MS----MERVIEAAKLAGAHD--------------------- 119 (237)
T ss_pred HhhcEEEEcCCchhc-cc------hHHHHhhccCCC--CC----HHHHHHHHHHcCcHH---------------------
Confidence 345799999998765 46 999999875211 11 111222233233211
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEEe
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+++.+ .... ..+..+..+|+|++|++.|+
T Consensus 120 ------------------------------------------------~l~~l~~~~~~-~~~~~~~~LSgG~~qrv~la 150 (237)
T cd03252 120 ------------------------------------------------FISELPEGYDT-IVGEQGAGLSGGQRQRIAIA 150 (237)
T ss_pred ------------------------------------------------HHHhCcccccc-hhhcCCCcCCHHHHHHHHHH
Confidence 11111 0000 12335667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+... ...++.++
T Consensus 151 ral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~~--~~d~v~~l 209 (237)
T cd03252 151 RALIH------NPRILIFDEATSALDYESEH-----------AIMRNMHDICA-GRTVIIIAHRLSTVK--NADRIIVM 209 (237)
T ss_pred HHHhh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEeCCHHHHH--hCCEEEEE
Confidence 99998 99999999998886655543 56666666543 788999999988653 25565555
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-20 Score=184.03 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred CCCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc
Q psy91 76 DRDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..+.+.++++++.|++ ..+|+++||+| +|+||||||||||+++|+| .+..|+|. ++|..+ ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~ 80 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL---LDGKPI----SQ 80 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE---ECCCch----HH
Confidence 4567899999999975 36999999999 9999999999999999955 46789999 888732 11
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+++.++|++|+..+++ . |+.+|+.++...... .... ......++
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~------tv~~nl~~~~~~~~~--~~~~----~~~~~~~~------------------ 129 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFA-R------SLQDNIAYGLQSCSF--ECVK----EAAQKAHA------------------ 129 (226)
T ss_pred cCHHHHHhhEEEEecccHHHh-h------hHHHHhccccCCCCH--HHHH----HHHHHcCc------------------
Confidence 112233457999999987764 6 899999876221111 0000 00000000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCc
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q 302 (541)
..+++.+ .... ..+..+..+|+|++|
T Consensus 130 ---------------------------------------------------~~~l~~l~~gl~~-~~~~~~~~LSgG~~q 157 (226)
T cd03248 130 ---------------------------------------------------HSFISELASGYDT-EVGEKGSQLSGGQKQ 157 (226)
T ss_pred ---------------------------------------------------HHHHHhccccccc-hhhcCCCcCCHHHHH
Confidence 0112222 1111 123446679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... . ..+
T Consensus 158 rv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~-~-~d~ 217 (226)
T cd03248 158 RVAIARALIR------NPQVLILDEATSALDAESEQ-----------QVQQALYDWPE-RRTVLVIAHRLSTVE-R-ADQ 217 (226)
T ss_pred HHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHcC-CCEEEEEECCHHHHH-h-CCE
Confidence 9999999998 99999999998876655543 56666766544 578889999987653 2 556
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 218 i~~l 221 (226)
T cd03248 218 ILVL 221 (226)
T ss_pred EEEe
Confidence 5554
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-21 Score=212.03 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=148.7
Q ss_pred CCCceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCcccee---
Q psy91 76 DRDYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVI--- 140 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~--- 140 (541)
..+.|.++||++.|+. ..+|++|||+| ||+|||||||||||++|+|. +..|.|. ++|..+..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~---~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ---CDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEE---ECCEEeccccc
Confidence 3457999999999963 46999999999 99999999999999999554 6789998 66642200
Q ss_pred ---cc---cccccc-cccccEEEEeCCC--ccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCcc
Q psy91 141 ---EV---AGTKVR-GRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLG 210 (541)
Q Consensus 141 ---~~---~~~~~~-~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ 210 (541)
.. .....+ .+.+.+|||+|++ .+++.+ ||.+|+.++... .+....+..+++.++++.+|+....
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF------TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh
Confidence 00 000011 1234699999997 688889 999999886211 1233444556677778777764200
Q ss_pred chhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCC
Q psy91 211 KSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 290 (541)
Q Consensus 211 ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~ 290 (541)
...+
T Consensus 160 ----------------------------------------------------------------------------~~~~ 163 (623)
T PRK10261 160 ----------------------------------------------------------------------------TILS 163 (623)
T ss_pred ----------------------------------------------------------------------------hHHh
Confidence 0123
Q ss_pred CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeecc
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEK 369 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~ 369 (541)
+++..+|+|++|++.|+++++. +++|+|+|||+.+.+..... ++.+++.+..+. +.++++.+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~------~P~lLllDEPt~~LD~~~~~-----------~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSC------RPAVLIADEPTTALDVTIQA-----------QILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhC------CCCEEEEeCCCCccCHHHHH-----------HHHHHHHHHHHhcCCEEEEEc
Confidence 3566799999999999999998 99999999997776554443 677777776544 78999999
Q ss_pred ccchhhhhcccceeEEEc
Q psy91 370 KSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvIp 387 (541)
|+++... ++..++.++.
T Consensus 227 Hdl~~~~-~~adri~vl~ 243 (623)
T PRK10261 227 HDMGVVA-EIADRVLVMY 243 (623)
T ss_pred CCHHHHH-HhCCEEEEee
Confidence 9987543 3556666653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-20 Score=187.33 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=140.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|+++.|+++.+|+++||+| ||+|||||||||||++|+|. + .+|+|. ++|..+.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~~~~--~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS---LRGQNIYA--PN 78 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE---EcCEEccc--cc
Confidence 4689999999999888999999999 99999999999999999763 2 379999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.+|+.++....+.. .....+.+...++.+|+...
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 137 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-F------SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------------- 137 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-C------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc--------------
Confidence 111123457999999988876 7 9999998752111111 11112233444554444210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+. + ..+..+..+|+|++|+
T Consensus 138 -------------------------------------------------------i~-----~-~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 138 -------------------------------------------------------VK-----D-HLHESALSLSGGQQQR 156 (252)
T ss_pred -------------------------------------------------------hh-----h-HHhcCcccCCHHHHHH
Confidence 00 0 1123456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ +.++++.+|+.+... .+..++
T Consensus 157 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~vsH~~~~~~-~~~d~i 217 (252)
T PRK14255 157 VCIARVLAV------KPDVILLDEPTSALDPISST-----------QIENMLLELRD-QYTIILVTHSMHQAS-RISDKT 217 (252)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHh-CCEEEEEECCHHHHH-HhCCEE
Confidence 999999999 99999999998887665553 56666666544 478889999877433 344566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 218 ~~l~ 221 (252)
T PRK14255 218 AFFL 221 (252)
T ss_pred EEEE
Confidence 5553
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-20 Score=187.09 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=140.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C-----CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D-----LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~-----~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + .+|+|. ++|..+.. . ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~~~~-~-~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL---LDGQDIYG-P-RV 78 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE---ECCEEccc-C-cc
Confidence 578999999999889999999999 99999999999999999765 2 269999 88873211 0 01
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++.+ |+.+|+.++...... ......+.+..++..+++...
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~------t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------- 137 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTM------SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE--------------- 137 (252)
T ss_pred CHHHhhceeEEEeccCccCcCC------CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---------------
Confidence 1113345799999999999888 999999765211111 112222333333443333210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+. . ..+..+..+|+|++|++
T Consensus 138 ------------------------------------------------------l~-----~-~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 138 ------------------------------------------------------VK-----D-RLKTPATGLSGGQQQRL 157 (252)
T ss_pred ------------------------------------------------------hh-----h-hhcCCcccCCHHHHHHH
Confidence 00 0 11234567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... .+..++.
T Consensus 158 ~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~~-~~~d~i~ 218 (252)
T PRK14272 158 CIARALAV------EPEILLMDEPTSALDPASTA-----------RIEDLMTDLKK-VTTIIIVTHNMHQAA-RVSDTTS 218 (252)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCCEEE
Confidence 99999999 99999999998887655543 56666666543 578899999877433 3555666
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 219 ~l 220 (252)
T PRK14272 219 FF 220 (252)
T ss_pred EE
Confidence 55
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-21 Score=188.04 Aligned_cols=204 Identities=17% Similarity=0.166 Sum_probs=148.7
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~ 142 (541)
++++||+..|.. ..+++||||+| ||||.|||||||+.++|++.. .+|+|. ++|+++....
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~---f~g~~l~~l~ 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL---FDGKDLLSLS 78 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE---ECCcccccCC
Confidence 578899998864 36999999999 999999999999999994422 357787 7787443221
Q ss_pred cccccccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 143 AGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.....+.+.+.++||||++ .|.|.+ ++.+.+.-... .... .+++..+++.++|+.+|+....
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~------~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~-------- 144 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVM------TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE-------- 144 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChh------hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------
Confidence 1111134556899999995 688888 88766654411 1222 4566777888889998886410
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
...+.++.++||
T Consensus 145 --------------------------------------------------------------------~~~~~YPhelSG 156 (316)
T COG0444 145 --------------------------------------------------------------------RRLKSYPHELSG 156 (316)
T ss_pred --------------------------------------------------------------------HHHhhCCcccCC
Confidence 012346788999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~ 377 (541)
|++||+.|+.+++. +|+|+|.|||+.+.++.... |+.+.|++..+ .+.++++.+|++-+..
T Consensus 157 GMrQRV~IAmala~------~P~LlIADEPTTALDvt~Qa-----------qIl~Ll~~l~~e~~~aiilITHDl~vva- 218 (316)
T COG0444 157 GMRQRVMIAMALAL------NPKLLIADEPTTALDVTVQA-----------QILDLLKELQREKGTALILITHDLGVVA- 218 (316)
T ss_pred cHHHHHHHHHHHhC------CCCEEEeCCCcchhhHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-
Confidence 99999999999998 99999999997776554443 88888888876 5778889999987654
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.+|.|.
T Consensus 219 ~~aDri~VM 227 (316)
T COG0444 219 EIADRVAVM 227 (316)
T ss_pred HhcceEEEE
Confidence 366666553
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-20 Score=177.89 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=125.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|+++.|+++.+|+++||++ +|+||||||||||+++|+| .+..|+|. ++|..+.. ... .....+
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~-~~~~~~ 75 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL---IDGEDLTD-LED-ELPPLR 75 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccc-cch-hHHHHh
Confidence 46889999998888999999999 9999999999999999954 45689999 77862211 100 012345
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+.
T Consensus 76 ~~i~~~~q~~~~~~~~------t~~~~l~~~------------------------------------------------- 100 (178)
T cd03229 76 RRIGMVFQDFALFPHL------TVLENIALG------------------------------------------------- 100 (178)
T ss_pred hcEEEEecCCccCCCC------CHHHheeec-------------------------------------------------
Confidence 6799999998888777 887776542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+|+|++|++.|+++++
T Consensus 101 ----------------------------------------------------------------lS~G~~qr~~la~al~ 116 (178)
T cd03229 101 ----------------------------------------------------------------LSGGQQQRVALARALA 116 (178)
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHHH
Confidence 6788999999999998
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..+.. .+.+++.+..+. ++++++.+|+.+... .+..++.++
T Consensus 117 ~------~p~llilDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 174 (178)
T cd03229 117 M------DPDVLLLDEPTSALDPITRR-----------EVRALLKSLQAQLGITVVLVTHDLDEAA-RLADRVVVL 174 (178)
T ss_pred C------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 8 99999999998887766554 667777766665 688999999876543 233444443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-20 Score=188.07 Aligned_cols=203 Identities=14% Similarity=0.071 Sum_probs=141.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|++. +..|+|. ++|..+.. ..
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~--~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT---FHGKNLYA--PD 83 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE---ECCEEccc--cc
Confidence 3689999999999889999999999 99999999999999999653 2579999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++|++|+..+++ . |+.+|+.++....... ....+.+..++..+|+...
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------------- 140 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFP-K------SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDE--------------- 140 (264)
T ss_pred cChHHHhhhEEEEccCCcccc-c------cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhh---------------
Confidence 111233457999999987765 6 8999998762111111 1122334444554444210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.. ..+..+..+|+|++|++
T Consensus 141 ------------------------------------------------------l~~------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 141 ------------------------------------------------------VKD------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ------------------------------------------------------HHH------HhcCCcccCCHHHHHHH
Confidence 000 11234567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... ++.++|.+..+ ++++++.+|+.+.. ..+..++.
T Consensus 161 ~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tvi~vtH~~~~~-~~~~d~v~ 221 (264)
T PRK14243 161 CIARAIAV------QPEVILMDEPCSALDPISTL-----------RIEELMHELKE-QYTIIIVTHNMQQA-ARVSDMTA 221 (264)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHH-HHhCCEEE
Confidence 99999998 99999999998887665543 56666666544 47888999987643 34566777
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 222 ~l~ 224 (264)
T PRK14243 222 FFN 224 (264)
T ss_pred EEe
Confidence 774
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-20 Score=187.99 Aligned_cols=202 Identities=15% Similarity=0.049 Sum_probs=139.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. ..|+|. ++|..+.. . .
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~l~~-~-~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL---YRDRNIYD-S-Q 93 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE---ECCEeccc-c-c
Confidence 4789999999999888999999999 999999999999999996531 479999 88873211 0 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++|++|+..+++ . |+.+|+.++....... ....+.+..+++.+|+...
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~------tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------------- 150 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFP-K------SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEE--------------- 150 (274)
T ss_pred chhHHHhhcEEEEccCCcccc-c------cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchh---------------
Confidence 111123457999999987764 5 8899988752211111 1111223334444443210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+. + ..+..+..+|+|++|++
T Consensus 151 ------------------------------------------------------l~-----~-~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 151 ------------------------------------------------------VK-----D-KLKEKGTALSGGQQQRL 170 (274)
T ss_pred ------------------------------------------------------hH-----H-HhcCCcccCCHHHHHHH
Confidence 00 0 11234567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+... .+..++.
T Consensus 171 ~LAraL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tiii~sH~~~~~~-~~~d~i~ 231 (274)
T PRK14265 171 CIARAIAM------KPDVLLMDEPCSALDPISTR-----------QVEELCLELKE-QYTIIMVTHNMQQAS-RVADWTA 231 (274)
T ss_pred HHHHHHhh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCEEE
Confidence 99999998 99999999998886655543 56666666644 578899999887543 3556776
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 232 ~l 233 (274)
T PRK14265 232 FF 233 (274)
T ss_pred EE
Confidence 66
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-20 Score=203.21 Aligned_cols=199 Identities=12% Similarity=0.165 Sum_probs=141.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++|+++.|+ .+|+++||+| +|+|||||||||||++|+| .++.|+|+ ++|+.+. .......
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~---~~g~~~~---~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR---LNGKDIS---PRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE---ECCEECC---CCCHHHH
Confidence 4699999999764 4899999999 9999999999999999955 46789999 8887321 1111112
Q ss_pred ccccEEEEeCC---CccccccccccCCCcccceecccccc--------ch-hhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 150 RQYPWGVVEGS---TVLTPSLIGSLFQTDRDYIGFATLPE--------QV-HRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 150 ~~~~~g~V~Q~---~~l~~~lig~~~qtv~e~l~~~~~~~--------~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.++.+|||+|+ ..+++.+ ||.+|+.++.... +. ........+..+++.+|+..
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 400 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNF------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC--------- 400 (510)
T ss_pred HHCCcEEccCccccCCCcCCC------cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC---------
Confidence 23468999998 4688889 9999998762110 00 01111123344444444320
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
+ ..++.+..+|
T Consensus 401 --------------------------------------------------------------------~-~~~~~~~~LS 411 (510)
T PRK09700 401 --------------------------------------------------------------------H-SVNQNITELS 411 (510)
T ss_pred --------------------------------------------------------------------C-CccCccccCC
Confidence 1 2345677899
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+|++|++.|+++++. +++++|+|||+.|.+..+.. .+.++|.+..+.+.++++.+|+++...
T Consensus 412 gGq~qrv~lAral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tvi~vsHd~~~~~- 473 (510)
T PRK09700 412 GGNQQKVLISKWLCC------CPEVIIFDEPTRGIDVGAKA-----------EIYKVMRQLADDGKVILMVSSELPEII- 473 (510)
T ss_pred hHHHHHHHHHHHHhc------CCCEEEECCCCCCcCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-
Confidence 999999999999998 99999999998887766553 666777766556889999999987543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 474 ~~~d~i~~l 482 (510)
T PRK09700 474 TVCDRIAVF 482 (510)
T ss_pred hhCCEEEEE
Confidence 355566655
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-20 Score=187.56 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=141.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-C------CCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-L------YGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-~------~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||++ +|+|||||||||||++|++.. . .|+|. ++|+.+.. ..
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~---~~g~~i~~--~~ 80 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE---FFNQNIYE--RR 80 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEE---ECCEEhhc--cc
Confidence 3689999999998888999999999 999999999999999996542 2 45555 55542110 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.||+.++....+. +..+..+.+..+++.+|+.+.
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 139 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-M------SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------------- 139 (261)
T ss_pred cchHHhhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch--------------
Confidence 111233457999999988887 8 999999775211111 122233445666666665320
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
++. ..+..+..+|+|++|+
T Consensus 140 -------------------------------------------------------~~~------~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 140 -------------------------------------------------------IKH------KIHKSALDLSGGQQQR 158 (261)
T ss_pred -------------------------------------------------------hhh------HhcCCcccCCHHHHHH
Confidence 000 1122455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .++++++.+|+.+... .+..+
T Consensus 159 v~laral~~------~p~vllLDEP~~~LD~~~~~-----------~l~~~l~~l~~~~~~tiiivsH~~~~i~-~~~d~ 220 (261)
T PRK14258 159 LCIARALAV------KPKVLLMDEPCFGLDPIASM-----------KVESLIQSLRLRSELTMVIVSHNLHQVS-RLSDF 220 (261)
T ss_pred HHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEECCHHHHH-HhcCE
Confidence 999999998 99999999998887665543 56666766543 4788999999987543 35566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 221 i~~l~ 225 (261)
T PRK14258 221 TAFFK 225 (261)
T ss_pred EEEEc
Confidence 66664
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-20 Score=189.16 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=139.7
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| ||+|+|||||||||++|+|. +.+|+|. ++|..+.. .
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---~~g~~~~~--~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL---YRDQNIFD--K 96 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE---ECCEEccc--c
Confidence 34789999999999888999999999 99999999999999999664 3779999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....... .......+..++..+++..
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 155 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFP-K------SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------------- 155 (271)
T ss_pred cccHHHHhhhEEEEecCCcccc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc--------------
Confidence 1111233457999999987764 5 8999998752111111 1111222333333333210
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ +. . ..+..+..+|+|++|
T Consensus 156 -------------------------------------------------~------l~-----~-~~~~~~~~LSgGe~q 174 (271)
T PRK14238 156 -------------------------------------------------E------LK-----D-RLHDNAYGLSGGQQQ 174 (271)
T ss_pred -------------------------------------------------h------HH-----H-HHhcCcccCCHHHHH
Confidence 0 00 0 112345678999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+.+... .++.+
T Consensus 175 rv~laraL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiivsH~~~~i~-~~~d~ 235 (271)
T PRK14238 175 RLCIARCLAI------EPDVILMDEPTSALDPISTL-----------KVEELVQELKK-DYSIIIVTHNMQQAA-RISDK 235 (271)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHc-CCEEEEEEcCHHHHH-HhCCE
Confidence 9999999998 99999999998887665553 56666766654 578899999877533 34556
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 236 i~~l 239 (271)
T PRK14238 236 TAFF 239 (271)
T ss_pred EEEE
Confidence 6555
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-20 Score=209.11 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=143.0
Q ss_pred CCCCceeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccc
Q psy91 75 TDRDYIGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
...+.|.++|++++|+.. .+|+|+|++| ||+|+||||||||+|+| +..|..|+|+ ++|. ++..
T Consensus 467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~---~dg~----dl~~ 539 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL---LDGV----DLND 539 (709)
T ss_pred ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----eHHh
Confidence 345689999999999866 6999999999 99999999999999999 5678899999 8888 4555
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
-.....++.+|||.|++.|| .| |++||+.++.-.. + .+.+-+++...|.... +..+ |
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf---~g----SI~eNi~l~~p~~--~----~e~i~~A~~~ag~~~f--------I~~l--P 596 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLF---SG----SIRENIALGNPEA--T----DEEIIEAAQLAGAHEF--------IENL--P 596 (709)
T ss_pred cCHHHHHhheeEEcccchhh---cC----cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHH--------HHhc--c
Confidence 55567788999999999998 44 8999999983111 1 1223333333333221 0000 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.||.+ .+|+. -..+||||+|++
T Consensus 597 ------------------~gy~t-------------------~v~E~---------------------G~~LSGGQrQrl 618 (709)
T COG2274 597 ------------------MGYDT-------------------PVGEG---------------------GANLSGGQRQRL 618 (709)
T ss_pred ------------------ccccc-------------------ccccC---------------------CCCCCHHHHHHH
Confidence 01110 12222 346899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +|+++|+|||+..-+..++. ++.+.|.+.. .++|+++.+|...... ...++.
T Consensus 619 alARaLl~------~P~ILlLDEaTSaLD~~sE~-----------~I~~~L~~~~-~~~T~I~IaHRl~ti~--~adrIi 678 (709)
T COG2274 619 ALARALLS------KPKILLLDEATSALDPETEA-----------IILQNLLQIL-QGRTVIIIAHRLSTIR--SADRII 678 (709)
T ss_pred HHHHHhcc------CCCEEEEeCcccccCHhHHH-----------HHHHHHHHHh-cCCeEEEEEccchHhh--hccEEE
Confidence 99999999 99999999997776655553 5555554433 3588888888755332 344555
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
|.+
T Consensus 679 Vl~ 681 (709)
T COG2274 679 VLD 681 (709)
T ss_pred Ecc
Confidence 554
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=176.32 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=123.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~----~~~~-~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK---VLGKDI----KKEP-EEVK 72 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEc----ccch-Hhhh
Confidence 46789999998888999999999 9999999999999999966 46789999 888732 1111 2334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~~~~~--------------------------------------------------- 95 (173)
T cd03230 73 RRIGYLPEEPSLYENL------TVRENLK--------------------------------------------------- 95 (173)
T ss_pred ccEEEEecCCccccCC------cHHHHhh---------------------------------------------------
Confidence 5799999998887777 7776642
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+|+|++|++.|+++++
T Consensus 96 ----------------------------------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 96 ----------------------------------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred ----------------------------------------------------------------cCHHHHHHHHHHHHHH
Confidence 6788999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 112 ~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiii~th~~~~~~-~~~d~i~~l 168 (173)
T cd03230 112 H------DPELLILDEPTSGLDPESRR-----------EFWELLRELKKEGKTILLSSHILEEAE-RLCDRVAIL 168 (173)
T ss_pred c------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHH-HhCCEEEEE
Confidence 8 99999999998876655543 666777766555788899999877433 344455544
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-20 Score=187.76 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=141.9
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| +|+||||||||||+++|+|. +.+|+|. ++|..+.. .
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~---i~g~~i~~--~ 97 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR---LDGQNIYD--K 97 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE---ECCEECcc--c
Confidence 34689999999998888999999999 99999999999999999665 3689999 88873311 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....+. ......+.+..+++.+|+...
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------- 157 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFP-K------SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE------------- 157 (272)
T ss_pred ccCHHHHhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------------
Confidence 1111233567999999987775 5 899999775211111 111222345555555554320
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.. ..+..+..+|+|++|
T Consensus 158 --------------------------------------------------------~~~------~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 158 --------------------------------------------------------VKD------RLHENAFGLSGGQQQ 175 (272)
T ss_pred --------------------------------------------------------HHH------HhhCCcccCCHHHHH
Confidence 000 112335568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+... .+..+
T Consensus 176 rv~laral~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~L~~~~~-~~tiiivtH~~~~~~-~~~d~ 236 (272)
T PRK14236 176 RLVIARAIAI------EPEVLLLDEPTSALDPISTL-----------KIEELITELKS-KYTIVIVTHNMQQAA-RVSDY 236 (272)
T ss_pred HHHHHHHHHC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-CCeEEEEeCCHHHHH-hhCCE
Confidence 9999999998 99999999998887655443 56666666654 578899999877433 34556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 237 i~~l~ 241 (272)
T PRK14236 237 TAFMY 241 (272)
T ss_pred EEEEE
Confidence 65553
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-20 Score=202.82 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=143.0
Q ss_pred Cceeeecccccc---cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C-CCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQV---HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D-LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~---~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~-~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
..+.++|+++.| +++.+|+++||+| ||+|||||||||||++|+|. | .+|+|. ++|+.+. ...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~---~~g~~~~---~~~ 329 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF---INGKPVD---IRN 329 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE---ECCEECC---CCC
Confidence 368999999999 3467999999999 99999999999999999664 2 589999 8887321 011
Q ss_pred ccccccccEEEEeCCC---ccccccccccCCCcccceecccccc-----chhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 146 KVRGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPE-----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~-----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.....++.+|||+|+. .+++.+ |+.+|+.++.... ..........+..+++.+|+..
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~~~~------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 394 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIVPIL------GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT--------- 394 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcCCCC------CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC---------
Confidence 1122345789999995 588888 9999998862110 0111112233444455444421
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
...++.+..+|
T Consensus 395 ---------------------------------------------------------------------~~~~~~~~~LS 405 (500)
T TIGR02633 395 ---------------------------------------------------------------------ASPFLPIGRLS 405 (500)
T ss_pred ---------------------------------------------------------------------CCccCccccCC
Confidence 12344566799
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+|++|++.|+++++. +++++|+|||..|.+..+.. .+.+++.+..+.+.++++.+|+++...
T Consensus 406 gGqkqrv~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tviivsHd~~~~~- 467 (500)
T TIGR02633 406 GGNQQKAVLAKMLLT------NPRVLILDEPTRGVDVGAKY-----------EIYKLINQLAQEGVAIIVVSSELAEVL- 467 (500)
T ss_pred HHHHHHHHHHHHHhh------CCCEEEEcCCCCCcCHhHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-
Confidence 999999999999998 99999999998887766553 566666666566889999999987543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 468 ~~~d~v~~l 476 (500)
T TIGR02633 468 GLSDRVLVI 476 (500)
T ss_pred HhCCEEEEE
Confidence 345555555
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=206.31 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=144.5
Q ss_pred Cceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C-----CCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D-----LYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~-----~~G~i~~~~~~G~~~~~ 140 (541)
+.++++|+++.|++ +.+|++|||+| ||+|||||||||||++|++. + ++|+|. ++|..+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR---FHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE---ECCEeccc
Confidence 35899999999963 57999999999 99999999999999999654 2 479999 88873211
Q ss_pred ccccccc-ccccccEEEEeCCCc--cccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 141 EVAGTKV-RGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 141 ~~~~~~~-~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
...... ..+++.+|||+|+.. +++.+ ++.+++.+.. ...+....+..+++.++++.+|+.+...
T Consensus 81 -~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----- 148 (529)
T PRK15134 81 -ASEQTLRGVRGNKIAMIFQEPMVSLNPLH------TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK----- 148 (529)
T ss_pred -CCHHHHHHHhcCceEEEecCchhhcCchh------hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH-----
Confidence 111111 122347999999864 56667 8888876431 1112233344556677777777643100
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
..++.+..+
T Consensus 149 -----------------------------------------------------------------------~~~~~~~~L 157 (529)
T PRK15134 149 -----------------------------------------------------------------------RLTDYPHQL 157 (529)
T ss_pred -----------------------------------------------------------------------HHhhCCccc
Confidence 113356679
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +|+++|+|||..|.+..... .+.++|.+..+. +.++++.+|+++..
T Consensus 158 SgGe~qrv~iAraL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 158 SGGERQRVMIAMALLT------RPELLIADEPTTALDVSVQA-----------QILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred CHHHHHHHHHHHHHhc------CCCEEEEcCCCCccCHHHHH-----------HHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 9999999999999998 99999999998876655543 667777776554 78899999998754
Q ss_pred hhcccceeEEEc
Q psy91 376 ERGVKLRLTVVD 387 (541)
Q Consensus 376 ~~~l~~rvnvIp 387 (541)
. .+..++.++.
T Consensus 221 ~-~~~dri~~l~ 231 (529)
T PRK15134 221 R-KLADRVAVMQ 231 (529)
T ss_pred H-HhcCEEEEEE
Confidence 3 3555665553
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-20 Score=186.84 Aligned_cols=204 Identities=19% Similarity=0.177 Sum_probs=135.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccce-ecccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTV-IEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~-~~~~~~~~~ 148 (541)
+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|.... ..+......
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT---YIMRSGAELELYQLSEA 78 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---EecccccccccccCCHH
Confidence 3588999999999888999999999 9999999999999999955 46789999 6665200 001111111
Q ss_pred ----cccccEEEEeCCCc--cccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 149 ----GRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 149 ----~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.+++.++|++|+.. +.+.+ ++.+|+.+...... .........+..+++.+|+.+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------------- 139 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRV------SAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP------------- 139 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccc------cHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-------------
Confidence 12346899999864 34445 66777654210000 001112233444455444421
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
...+..+..+|+|++
T Consensus 140 -----------------------------------------------------------------~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 140 -----------------------------------------------------------------TRIDDLPRAFSGGMQ 154 (253)
T ss_pred -----------------------------------------------------------------hhhhcCchhcCHHHH
Confidence 012234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .+.++++.+|+.+... .+.
T Consensus 155 qrv~laral~~------~p~vlllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~vsH~~~~~~-~~~ 216 (253)
T TIGR02323 155 QRLQIARNLVT------RPRLVFMDEPTGGLDVSVQA-----------RLLDLLRGLVRDLGLAVIIVTHDLGVAR-LLA 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-Hhc
Confidence 99999999999 99999999998887665543 56666666544 3788999999877443 244
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 217 d~~~~l 222 (253)
T TIGR02323 217 QRLLVM 222 (253)
T ss_pred CEEEEE
Confidence 455554
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-20 Score=184.01 Aligned_cols=197 Identities=17% Similarity=0.200 Sum_probs=136.6
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++++++.|+ ++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ .......+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~---~~g~~~----~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL---IDGQDI----REVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE---ECCEEh----hhCCHHHH
Confidence 46789999996 567999999999 9999999999999999955 46789999 888732 21122233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++ . |+.+|+.++... .... .+...+..+++..
T Consensus 74 ~~~i~~~~q~~~~~~-~------tv~~nl~~~~~~--~~~~----~~~~~~~~~~l~~---------------------- 118 (236)
T cd03253 74 RRAIGVVPQDTVLFN-D------TIGYNIRYGRPD--ATDE----EVIEAAKAAQIHD---------------------- 118 (236)
T ss_pred HhhEEEECCCChhhc-c------hHHHHHhhcCCC--CCHH----HHHHHHHHcCcHH----------------------
Confidence 457999999987764 6 999999876321 1111 1222333333311
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEEee
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++..+ .... .....+..+|+|++|++.|++
T Consensus 119 -----------------------------------------------~~~~l~~~~~~-~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 119 -----------------------------------------------KIMRFPDGYDT-IVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred -----------------------------------------------HHHhccccccc-hhhcCCCcCCHHHHHHHHHHH
Confidence 00000 0000 112335679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +|+++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+.... +.++.++
T Consensus 151 aL~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 151 AILK------NPPILLLDEATSALDTHTER-----------EIQAALRDVSK-GRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEcCCHHHHHh--CCEEEEE
Confidence 9999 99999999998886655543 66777777666 8899999999886643 5666655
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=179.39 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=129.0
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceecccc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
.+.++++++.|++ +.+|+++||++ +|+|||||||||||++|+|. +..|+|. ++|+.+ .
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~---~~g~~~----~- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL---INGRPL----D- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE---ECCEeh----H-
Confidence 4789999999975 67999999998 99999999999999999763 5789999 888732 1
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
...++.++|++|+..+++.+ |+++|+.++.. +.
T Consensus 75 ---~~~~~~i~~~~q~~~~~~~~------tv~~~l~~~~~----------------~~---------------------- 107 (192)
T cd03232 75 ---KNFQRSTGYVEQQDVHSPNL------TVREALRFSAL----------------LR---------------------- 107 (192)
T ss_pred ---HHhhhceEEecccCccccCC------cHHHHHHHHHH----------------Hh----------------------
Confidence 13345789999998888888 99998875410 00
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.+|+|++|++
T Consensus 108 ----------------------------------------------------------------------~LSgGe~qrv 117 (192)
T cd03232 108 ----------------------------------------------------------------------GLSVEQRKRL 117 (192)
T ss_pred ----------------------------------------------------------------------cCCHHHhHHH
Confidence 4789999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.+.+.+..+.++++++.+|+.+.+......++.
T Consensus 118 ~la~al~~------~p~vlllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~ 180 (192)
T cd03232 118 TIGVELAA------KPSILFLDEPTSGLDSQAAY-----------NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL 180 (192)
T ss_pred HHHHHHhc------CCcEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEE
Confidence 99999998 99999999998887665553 56666666555578999999998742233445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 181 ~l 182 (192)
T cd03232 181 LL 182 (192)
T ss_pred EE
Confidence 54
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-20 Score=183.35 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=129.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc-c
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
|.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+ ..... .
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~---~~g~~~----~~~~~~~ 74 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---FKGKDL----LELSPED 74 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE---ECCCcc----ccCCHHH
Confidence 67899999999888999999998 99999999999999999665 6789999 888732 11111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccc--ccc--c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT--LPE--Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~--~~~--~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
..+..++|++|+..+++.+ ++.+++.+.. +.. . .........+...+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------------- 128 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGV------SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKI-------------------- 128 (248)
T ss_pred HhhcceEEEecCchhccch------hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHH--------------------
Confidence 2234689999998877766 5433322110 000 0 00000001111111
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVNDRQ 300 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~g~ 300 (541)
..+...+.+.+..+. .+|+|+
T Consensus 129 ----------------------------------------------------------~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 129 ----------------------------------------------------------ALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred ----------------------------------------------------------HHcCCChhhcccCCCCCCCHHH
Confidence 111111112223333 699999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +|+++|+|||..|-+..... .+.+.|.+..+.++++++.+|+.++......
T Consensus 151 ~qrv~laral~~------~p~illLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~ 213 (248)
T PRK09580 151 KKRNDILQMAVL------EPELCILDESDSGLDIDALK-----------IVADGVNSLRDGKRSFIIVTHYQRILDYIKP 213 (248)
T ss_pred HHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHHhhhC
Confidence 999999999999 99999999998876655543 5556666655557899999999876543224
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 214 d~i~~l 219 (248)
T PRK09580 214 DYVHVL 219 (248)
T ss_pred CEEEEE
Confidence 555554
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-20 Score=185.62 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=134.3
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++|+++.|+ ++.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ .. ..
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i----~~---~~ 75 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS---ILGQPT----RQ---AL 75 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEh----HH---hh
Confidence 588999999995 578999999999 9999999999999999955 46789999 888732 11 11
Q ss_pred ccccEEEEeCCCcccc--ccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 150 RQYPWGVVEGSTVLTP--SLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~--~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.+..++|++|+..+.+ .. ++.+++.++.... . .........+..+++.+|+.+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------------- 134 (272)
T PRK15056 76 QKNLVAYVPQSEEVDWSFPV------LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE--------------- 134 (272)
T ss_pred ccceEEEeccccccccCCCc------chhhheecccccccccccCCCHHHHHHHHHHHHHcCChh---------------
Confidence 2345899999876532 23 5677776542110 0 011112223344444444432
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 135 ----------------------------------------------------------------~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 135 ----------------------------------------------------------------FRHRQIGELSGGQKKR 150 (272)
T ss_pred ----------------------------------------------------------------HhcCCcccCCHHHHHH
Confidence 1233456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+.+... .++.++
T Consensus 151 v~laraL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~g~tviivsH~~~~~~-~~~d~v 212 (272)
T PRK15056 151 VFLARAIAQ------QGQVILLDEPFTGVDVKTEA-----------RIISLLRELRDEGKTMLVSTHNLGSVT-EFCDYT 212 (272)
T ss_pred HHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEE
Confidence 999999998 99999999998887665553 666777766555788999999986443 234444
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 213 ~~~ 215 (272)
T PRK15056 213 VMV 215 (272)
T ss_pred EEE
Confidence 333
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-20 Score=225.27 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=145.3
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
...|+++||++.|+ ++.+|+|+|+++ +|+|||||||||||++|+| .|++|+|+ ++|..+ ...
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~---i~G~dI----~~~- 997 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL---VGGKDI----ETN- 997 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEE---ECCEEC----cch-
Confidence 35799999999995 578999999998 9999999999999999955 57899999 888733 211
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.+||++|++.+++.+ ||+|++.|.....+....+..+++..+++.+|+.+
T Consensus 998 ~~~~r~~IG~~pQ~~~L~~~L------TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~------------------ 1053 (2272)
T TIGR01257 998 LDAVRQSLGMCPQHNILFHHL------TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH------------------ 1053 (2272)
T ss_pred HHHHhhcEEEEecCCcCCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 223345799999999999999 99999988622223333344456677777777643
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|+++|
T Consensus 1054 -------------------------------------------------------------~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1054 -------------------------------------------------------------KRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred -------------------------------------------------------------hhcCChhhCCHHHHHHHHH
Confidence 1233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
+++++. +++++|+|||+.|-+..... .+.+.|.+.. .++++++.+|+++..+
T Consensus 1073 ArALi~------~PkVLLLDEPTSGLDp~sr~-----------~l~~lL~~l~-~g~TIIltTHdmdea~ 1124 (2272)
T TIGR01257 1073 AIAFVG------DAKVVVLDEPTSGVDPYSRR-----------SIWDLLLKYR-SGRTIIMSTHHMDEAD 1124 (2272)
T ss_pred HHHHHc------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHHh-CCCEEEEEECCHHHHH
Confidence 999998 99999999998886655443 5666666663 4889999999987543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-20 Score=171.39 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=145.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
..+.+++|+++|++-.+|+++||+| +|||||||||||+|++|.| +|..|+++ +.|. .++...+. +
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~---f~g~---~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL---FDGD---TDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE---EcCc---hhhccCCHHH
Confidence 4678999999999999999999999 9999999999999999965 46779999 8884 13333221 2
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccc-ccc-------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
..+..+|--||.+..|..+ ||+||+.++.- .+. ....+..++++++|+..||...+
T Consensus 78 IAr~GIGRKFQ~PtVfe~l------tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~---------- 141 (249)
T COG4674 78 IARAGIGRKFQKPTVFENL------TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER---------- 141 (249)
T ss_pred HHHhccCccccCCeehhhc------cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh----------
Confidence 3345789999999999999 99999998721 111 11233455778888888776521
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
+.....+|.|+
T Consensus 142 ---------------------------------------------------------------------~~~A~~LSHGq 152 (249)
T COG4674 142 ---------------------------------------------------------------------DRLAALLSHGQ 152 (249)
T ss_pred ---------------------------------------------------------------------hhhhhhhccch
Confidence 22234578999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|+++|..-++. +|+|+++|||-.|....... +.-+.|... ....++++..|++.+.. .+.
T Consensus 153 KQwLEIGMll~Q------~P~lLLlDEPvAGMTd~Et~-----------~taeLl~~l-a~~hsilVVEHDM~Fvr-~~A 213 (249)
T COG4674 153 KQWLEIGMLLAQ------DPKLLLLDEPVAGMTDAETE-----------KTAELLKSL-AGKHSILVVEHDMGFVR-EIA 213 (249)
T ss_pred hhhhhhheeecc------CCcEEEecCccCCCcHHHHH-----------HHHHHHHHH-hcCceEEEEeccHHHHH-Hhh
Confidence 999999999998 99999999998886533322 233333332 34567778888877653 366
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.+|++.
T Consensus 214 ~~VTVl 219 (249)
T COG4674 214 DKVTVL 219 (249)
T ss_pred heeEEE
Confidence 777775
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-20 Score=186.69 Aligned_cols=202 Identities=16% Similarity=0.163 Sum_probs=139.0
Q ss_pred ceeeeccccccc---------ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec
Q psy91 79 YIGFATLPEQVH---------RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 79 ~i~~~~l~~~~~---------~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~ 141 (541)
.|.++||++.|+ ++.+|+|+||+| +|+|||||||||||++|+| .+.+|+|. ++|..+..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~---~~g~~~~~- 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS---WRGEPLAK- 78 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEeccc-
Confidence 478999999997 478999999999 9999999999999999955 47789999 88873211
Q ss_pred ccccccccccccEEEEeCCC--ccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 VAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.........++.++|++|+. .+++.. ++.+++.+.... ..........++..+++.+|+..
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------- 142 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD---------- 142 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCC------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------
Confidence 11111112345799999997 355667 888887553100 01112222334555555555431
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
...+..+..+|+
T Consensus 143 --------------------------------------------------------------------~~~~~~~~~LS~ 154 (268)
T PRK10419 143 --------------------------------------------------------------------SVLDKRPPQLSG 154 (268)
T ss_pred --------------------------------------------------------------------hHhhCCCccCCh
Confidence 011234556899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~ 377 (541)
|++|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+.+...
T Consensus 155 Ge~qrl~laral~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~tiiivsH~~~~i~- 216 (268)
T PRK10419 155 GQLQRVCLARALAV------EPKLLILDEAVSNLDLVLQA-----------GVIRLLKKLQQQFGTACLFITHDLRLVE- 216 (268)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHHHHcCcEEEEEECCHHHHH-
Confidence 99999999999999 99999999998886655443 566777766554 788999999877443
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 217 ~~~d~i~~l 225 (268)
T PRK10419 217 RFCQRVMVM 225 (268)
T ss_pred HhCCEEEEE
Confidence 344565555
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-20 Score=184.29 Aligned_cols=198 Identities=18% Similarity=0.210 Sum_probs=135.8
Q ss_pred eeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 80 IGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 80 i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL---LDGVDI----RDLNLR 73 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE---ECCEeh----hhcCHH
Confidence 467899999964 46999999999 9999999999999999955 46789999 888732 111111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++|++|+..+++ . |+.+|+.++..... . ..+...+...++..
T Consensus 74 ~~~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~~--~----~~~~~~~~~~~~~~-------------------- 120 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-G------TIAENIRYGKPDAT--D----EEVEEAAKKANIHD-------------------- 120 (238)
T ss_pred HHHhhEEEECCchhhhh-h------hHHHHhhccCCCCC--H----HHHHHHHHHcChHH--------------------
Confidence 23456999999987764 6 89999987622111 0 11222222222211
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEE
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
++..+ .... ..+..+..+|+|++|++.|
T Consensus 121 -------------------------------------------------~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~l 150 (238)
T cd03249 121 -------------------------------------------------FIMSLPDGYDT-LVGERGSQLSGGQKQRIAI 150 (238)
T ss_pred -------------------------------------------------HHHhhccccce-eeccCCccCCHHHHHHHHH
Confidence 00100 0000 1233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|-+..... .+.++|.+.. .++++++.+|+.+... .+.++.++
T Consensus 151 a~al~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~-~g~~vi~~sh~~~~~~--~~d~v~~l 210 (238)
T cd03249 151 ARALLR------NPKILLLDEATSALDAESEK-----------LVQEALDRAM-KGRTTIVIAHRLSTIR--NADLIAVL 210 (238)
T ss_pred HHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEeCCHHHHh--hCCEEEEE
Confidence 999998 99999999998887665553 6667776665 5788999999887653 46677666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 211 ~ 211 (238)
T cd03249 211 Q 211 (238)
T ss_pred E
Confidence 3
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-20 Score=205.73 Aligned_cols=204 Identities=17% Similarity=0.136 Sum_probs=145.3
Q ss_pred Cceeeeccccccc-----------ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccce
Q psy91 78 DYIGFATLPEQVH-----------RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTV 139 (541)
Q Consensus 78 ~~i~~~~l~~~~~-----------~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~ 139 (541)
+.+.++|+++.|+ ++.+|++|||+| ||+|||||||||||++|++. +.+|+|+ ++|..+.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~---~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIW---FDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEE---ECCEEcc
Confidence 4689999999995 357999999999 99999999999999999553 4789999 8887331
Q ss_pred ecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCccchhhh
Q psy91 140 IEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKSTLV 215 (541)
Q Consensus 140 ~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ks~l~ 215 (541)
. .+......+++.++||+|+. .+++.+ ||.+|+.++.... .....+..+++..+++.+|+..
T Consensus 351 ~-~~~~~~~~~~~~i~~v~q~~~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 416 (529)
T PRK15134 351 N-LNRRQLLPVRHRIQVVFQDPNSSLNPRL------NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP------- 416 (529)
T ss_pred c-cchhhHHHhhhceEEEEeCchhhcCCcc------cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-------
Confidence 1 11111112245699999996 478888 9999998752111 1122223344555666655531
Q ss_pred hhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC
Q psy91 216 NSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295 (541)
Q Consensus 216 ~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ 295 (541)
...++.+..
T Consensus 417 -----------------------------------------------------------------------~~~~~~~~~ 425 (529)
T PRK15134 417 -----------------------------------------------------------------------ETRHRYPAE 425 (529)
T ss_pred -----------------------------------------------------------------------HHHhcCCcc
Confidence 012334667
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDI 374 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di 374 (541)
+|+|++|++.|+++++. +++++|+|||+.|-+..+.. .+.+.|.+..+. +.++++.+|+++.
T Consensus 426 LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 426 FSGGQRQRIAIARALIL------KPSLIILDEPTSSLDKTVQA-----------QILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred CCHHHHHHHHHHHHHhC------CCCEEEeeCCccccCHHHHH-----------HHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 99999999999999998 99999999998886655543 666777776554 7889999999875
Q ss_pred hhhcccceeEEEc
Q psy91 375 EERGVKLRLTVVD 387 (541)
Q Consensus 375 ~~~~l~~rvnvIp 387 (541)
.. .++.++.++.
T Consensus 489 ~~-~~~d~i~~l~ 500 (529)
T PRK15134 489 VR-ALCHQVIVLR 500 (529)
T ss_pred HH-HhcCeEEEEE
Confidence 43 3556666663
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-20 Score=185.57 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=139.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
-.++|+++.|+++.+|+++||+| +|+||||||||||+++|+|. +..|+|. ++|..+.. .. ..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~i~~-~~-~~ 80 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD---IDGIDVYS-VD-TN 80 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEE---ECCEehHh-cc-cc
Confidence 36889999998889999999999 99999999999999999664 2589999 88873211 00 11
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
....++.++||+|+..+++ . |+.+|+.++...... ......+.+..+++.+|+...-.
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~------tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------- 140 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFP-K------SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------------- 140 (251)
T ss_pred hHHHhhhEEEEecCccccc-C------CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------------
Confidence 1123457999999987765 5 888998775211111 11222334556666666643100
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ ..+..+..+|+|++|++
T Consensus 141 ----------------------------------------------------~----------~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 141 ----------------------------------------------------D----------RLKDSAFELSGGQQQRL 158 (251)
T ss_pred ----------------------------------------------------h----------HhhcChhhCCHHHHHHH
Confidence 0 01223456899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ ++++++.+|+.+... .+..++.
T Consensus 159 ~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiiisH~~~~~~-~~~d~i~ 219 (251)
T PRK14244 159 CIARAIAV------KPTMLLMDEPCSALDPVATN-----------VIENLIQELKK-NFTIIVVTHSMKQAK-KVSDRVA 219 (251)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-hhcCEEE
Confidence 99999998 99999999998887665543 56666766543 788999999877433 3455666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 220 ~l~ 222 (251)
T PRK14244 220 FFQ 222 (251)
T ss_pred EEE
Confidence 654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-20 Score=180.61 Aligned_cols=199 Identities=17% Similarity=0.146 Sum_probs=136.8
Q ss_pred ceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.++|++++|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|.. +......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~----~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL---IDGVD----ISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE---ECCEE----hHhCCHH
Confidence 3789999999964 47999999999 9999999999999999955 57789999 88873 2222222
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.++|++|+..+++ . |+.||+.+... .. ...+..+++.+|+.+..+.. ..++
T Consensus 75 ~~~~~i~~~~q~~~l~~-~------tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l----~~~l------- 129 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-G------TIRSNLDPFGE---YS----DEELWQALERVGLKEFVESL----PGGL------- 129 (221)
T ss_pred HHhhhEEEECCCCcccc-c------hHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhc----cccc-------
Confidence 34567999999987653 5 89999875411 11 12344455555553210000 0000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.. ..+..+..+|+|++|++.|++
T Consensus 130 --------------------------------------------------------~~-~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 130 --------------------------------------------------------DT-VVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred --------------------------------------------------------cc-ccccCCCcCCHHHHHHHHHHH
Confidence 00 112345679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+.... ..++.++
T Consensus 153 al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~i~~l 210 (221)
T cd03244 153 ALLR------KSKILVLDEATASVDPETDA-----------LIQKTIREAFK-DCTVLTIAHRLDTIID--SDRILVL 210 (221)
T ss_pred HHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEeCCHHHHhh--CCEEEEE
Confidence 9998 99999999998876655543 56666665543 5788889998876543 4555555
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-20 Score=225.63 Aligned_cols=199 Identities=17% Similarity=0.204 Sum_probs=151.1
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
..|.++||++.|++ +.+|++|||.| ||+|||||||||||++|+| .+++|+|+ ++|..+ ... .
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~---i~G~~i----~~~-~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT---VAGKSI----LTN-I 2007 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE---ECCEEC----cch-H
Confidence 46899999999986 57999999999 9999999999999999955 57899999 888733 111 1
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+||++|++.+++.+ |++|++.+.....+.+.++..+.++.+++.+|+..
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~L------Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~------------------- 2062 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLL------TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL------------------- 2062 (2272)
T ss_pred HHHhhhEEEEeccccCCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-------------------
Confidence 22345799999999999999 99999987422223333344455666677666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 2063 ------------------------------------------------------------~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2063 ------------------------------------------------------------YADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred ------------------------------------------------------------HhcCChhhCCHHHHHHHHHH
Confidence 22344567899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++++|||..|-+..... .+.+.+.+..+.++++++.+|+++..+ .++.++.++.
T Consensus 2083 ~ALi~------~P~VLLLDEPTsGLDp~sr~-----------~l~~lL~~l~~~g~TIILtTH~mee~e-~lcDrV~IL~ 2144 (2272)
T TIGR01257 2083 IALIG------CPPLVLLDEPTTGMDPQARR-----------MLWNTIVSIIREGRAVVLTSHSMEECE-ALCTRLAIMV 2144 (2272)
T ss_pred HHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887655543 566666666556889999999987443 4667776663
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-20 Score=176.64 Aligned_cols=204 Identities=15% Similarity=0.186 Sum_probs=141.6
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+++.|.++|+++.|+++.||++||.+| +|+|||||||||||+++++ .+.+|.+. +.|+ ......
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~---~~G~----~~G~~~ 99 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---LLGR----RFGKGE 99 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCcee---eeee----eccCCc
Confidence 4456899999999999999999999999 9999999999999999944 45568887 7776 222222
Q ss_pred c-ccccccEEEEeCC--CccccccccccCCCcccceecccc-----ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 147 V-RGRQYPWGVVEGS--TVLTPSLIGSLFQTDRDYIGFATL-----PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 147 ~-~~~~~~~g~V~Q~--~~l~~~lig~~~qtv~e~l~~~~~-----~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
. ...++.+|+|.-. ..+.+.. +|+|.|.=+.. ......++..+++..+++.+|+.+
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~------~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~---------- 163 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRE------TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH---------- 163 (257)
T ss_pred chHHHHHHhCccCHHHHhhccccc------ccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh----------
Confidence 2 4567789998643 2233334 56665543311 010122334444555555555543
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
+.++....+|.
T Consensus 164 ---------------------------------------------------------------------la~r~~~~LS~ 174 (257)
T COG1119 164 ---------------------------------------------------------------------LADRPFGSLSQ 174 (257)
T ss_pred ---------------------------------------------------------------------hccCchhhcCH
Confidence 44556677899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc--Ccceeeccccchhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--GKTTTIEKKSMDIEE 376 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--~rt~~i~~~~~di~~ 376 (541)
|+++++-|+++++. +|+|+|+|||..|-+.-+.+ ++.++|.+.... ..++++++|..+-..
T Consensus 175 Ge~rrvLiaRALv~------~P~LLiLDEP~~GLDl~~re-----------~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 175 GEQRRVLIARALVK------DPELLILDEPAQGLDLIARE-----------QLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred hHHHHHHHHHHHhc------CCCEEEecCccccCChHHHH-----------HHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 99999999999999 99999999997775543332 677777776544 556777777766445
Q ss_pred hcccceeEEEc
Q psy91 377 RGVKLRLTVVD 387 (541)
Q Consensus 377 ~~l~~rvnvIp 387 (541)
.+++.++-+.+
T Consensus 238 ~~~th~lll~~ 248 (257)
T COG1119 238 PCFTHRLLLKE 248 (257)
T ss_pred cccceEEEeeC
Confidence 67777776664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-20 Score=202.94 Aligned_cols=197 Identities=16% Similarity=0.082 Sum_probs=135.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~---~~~~~~----~~~~~~~~ 75 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ---SQFSHI----TRLSFEQL 75 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE---ECCccc----ccCCHHHH
Confidence 478999999999888999999999 9999999999999999965 46789998 777522 11111122
Q ss_pred cccEEEEeCCCccc--cccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 151 QYPWGVVEGSTVLT--PSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~--~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
++.++|++|+..+. .........++.+++.++ ....+++..+++.+|+.+
T Consensus 76 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~-------------------- 127 (490)
T PRK10938 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITA-------------------- 127 (490)
T ss_pred HHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHh--------------------
Confidence 34589999975431 000000011566655432 112234455555555532
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.++.+..+|+|++|++.|++
T Consensus 128 -----------------------------------------------------------~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 128 -----------------------------------------------------------LLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred -----------------------------------------------------------hhhCCcccCCHHHHHHHHHHH
Confidence 224456779999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|.+..... ++.++|.+..+.+.++++.+|+++... .++.++.++.
T Consensus 149 al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tvii~tH~~~~~~-~~~d~v~~l~ 209 (490)
T PRK10938 149 ALMS------EPDLLILDEPFDGLDVASRQ-----------QLAELLASLHQSGITLVLVLNRFDEIP-DFVQFAGVLA 209 (490)
T ss_pred HHHc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhcCCeEEEEeCCHHHHH-hhCCEEEEEE
Confidence 9998 99999999998876655443 667777766556789999999877543 4555655553
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-20 Score=207.32 Aligned_cols=202 Identities=22% Similarity=0.236 Sum_probs=140.3
Q ss_pred Cceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||++.| +++++|+|+||+| ||+||||||||||+++|++. |.+|+|. ++|. ++.......
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~---i~g~----~i~~~~~~~ 420 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLK---INGI----ELRELDPES 420 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEE---ECCE----ecccCCHHH
Confidence 359999999655 5678999999999 99999999999999999332 7789999 8887 333333445
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|++.+|. - |++||+.+++ + ..+ .+.+.++++..|+... +..+ +
T Consensus 421 lr~~i~~v~Q~~~LF~-~------TI~eNI~~g~-~-~~~----~eei~~al~~a~l~~~--------i~~l--p----- 472 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH-G------TLRDNVLLGN-P-DAS----DEQLQQALENAWVSEF--------LPLL--P----- 472 (588)
T ss_pred HHhheEEecCCCcCCC-c------CHHHHhhcCC-C-CCC----HHHHHHHHHHhCHHHH--------HHhc--c-----
Confidence 5678999999999884 3 8999999983 1 112 2345555666665431 1100 0
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+|.+- .+|+. -..+||||+||++|+|+
T Consensus 473 -----------------------------~G~dT---~vge~---------------------G~~LSGGQrQRialARA 499 (588)
T PRK11174 473 -----------------------------QGLDT---PIGDQ---------------------AAGLSVGQAQRLALARA 499 (588)
T ss_pred -----------------------------ccccc---ccccC---------------------CCCCCHHHHHHHHHHHH
Confidence 00000 11222 23589999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.+. +++++|+|||+.+-+..++. ++.+.|.+. ..++|+++.+|.+.... ...++.+++
T Consensus 500 ll~------~~~IliLDE~TSaLD~~te~-----------~i~~~l~~~-~~~~TvIiItHrl~~i~--~aD~Iivl~ 557 (588)
T PRK11174 500 LLQ------PCQLLLLDEPTASLDAHSEQ-----------LVMQALNAA-SRRQTTLMVTHQLEDLA--QWDQIWVMQ 557 (588)
T ss_pred Hhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHH-hCCCEEEEEecChHHHH--hCCEEEEEe
Confidence 999 99999999997765555443 444445443 34789999999875433 356666664
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-20 Score=184.25 Aligned_cols=183 Identities=16% Similarity=0.215 Sum_probs=129.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~---~~~~------------- 66 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGK------------- 66 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCc-------------
Confidence 4689999999999888999999999 99999999999999999664 5677776 5432
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
..++|++|+..+++.+ ..++.+++.+. ... ..+.+..+++.+|+..
T Consensus 67 --~~i~~v~q~~~~~~~l----~~~~~~~~~~~---~~~----~~~~~~~~l~~~gl~~--------------------- 112 (251)
T PRK09544 67 --LRIGYVPQKLYLDTTL----PLTVNRFLRLR---PGT----KKEDILPALKRVQAGH--------------------- 112 (251)
T ss_pred --cCEEEecccccccccc----ChhHHHHHhcc---ccc----cHHHHHHHHHHcCChH---------------------
Confidence 2589999998776543 01455544332 011 1122344455555422
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.+..+..+|+|++|++.|+++
T Consensus 113 ----------------------------------------------------------~~~~~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 113 ----------------------------------------------------------LIDAPMQKLSGGETQRVLLARA 134 (251)
T ss_pred ----------------------------------------------------------HHhCChhhCCHHHHHHHHHHHH
Confidence 1122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+.+... .+..++.++
T Consensus 135 l~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~tiiivsH~~~~i~-~~~d~i~~l 194 (251)
T PRK09544 135 LLN------RPQLLVLDEPTQGVDVNGQV-----------ALYDLIDQLRRELDCAVLMVSHDLHLVM-AKTDEVLCL 194 (251)
T ss_pred Hhc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998 99999999998886655443 566667666544 788999999987543 244555555
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-20 Score=183.61 Aligned_cols=205 Identities=12% Similarity=0.024 Sum_probs=144.8
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~ 142 (541)
.++.+.++++++.|+++.+|+++||+| +|+||||||||||+++|+|.. .+|+|+ ++|+.+.. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~---~~g~~i~~-~ 80 (261)
T PRK14263 5 APIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH---FLGQDVYG-K 80 (261)
T ss_pred CCceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE---ECCEeccc-c
Confidence 345788999999999989999999999 999999999999999996542 589999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
. ......++.++|++|+..++ .+ |+.||+.++...... .......+..+++.+|+......
T Consensus 81 ~-~~~~~~~~~i~~v~q~~~~~-~~------tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~---------- 141 (261)
T PRK14263 81 G-VDPVVVRRYIGMVFQQPNPF-SM------SIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKD---------- 141 (261)
T ss_pred c-cchHhhhhceEEEecCCccc-cc------cHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhh----------
Confidence 0 11123345799999998877 47 999999876321111 12233456666766665321000
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..+..+..+|+|++|
T Consensus 142 -----------------------------------------------------------------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 142 -----------------------------------------------------------------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred -----------------------------------------------------------------hhhCCcccCCHHHHH
Confidence 001234468999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+++... .+..+
T Consensus 157 rv~laral~~------~p~llllDEPtsgLD~~~~~-----------~l~~~l~~~~~-~~tii~isH~~~~i~-~~~d~ 217 (261)
T PRK14263 157 RLCIARAIAT------EPEVLLLDEPCSALDPIATR-----------RVEELMVELKK-DYTIALVTHNMQQAI-RVADT 217 (261)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998887665553 56666666543 578889999877433 46667
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 218 v~~l~ 222 (261)
T PRK14263 218 TAFFS 222 (261)
T ss_pred EEEEe
Confidence 77763
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-20 Score=174.23 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=121.0
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
++++|++++|++ +.+++++||++ +|+|||||||||||++|++ .+.+|+|. ++|..+ .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR---LDGADI----SQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE---ECCEEc----ccCCHHH
Confidence 468899999975 56999999999 9999999999999999955 56789999 888732 2211223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++|++|+..+++ . |+++|+
T Consensus 74 ~~~~i~~~~q~~~~~~-~------tv~~~l-------------------------------------------------- 96 (173)
T cd03246 74 LGDHVGYLPQDDELFS-G------SIAENI-------------------------------------------------- 96 (173)
T ss_pred HHhheEEECCCCcccc-C------cHHHHC--------------------------------------------------
Confidence 3457899999876554 4 666654
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+|+|++|++.|+++
T Consensus 97 ------------------------------------------------------------------LS~G~~qrv~la~a 110 (173)
T cd03246 97 ------------------------------------------------------------------LSGGQRQRLGLARA 110 (173)
T ss_pred ------------------------------------------------------------------cCHHHHHHHHHHHH
Confidence 67889999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... ++.+.|.+..+.++++++.+|+.+... ...++.++
T Consensus 111 l~~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sh~~~~~~--~~d~v~~l 168 (173)
T cd03246 111 LYG------NPRILVLDEPNSHLDVEGER-----------ALNQAIAALKAAGATRIVIAHRPETLA--SADRILVL 168 (173)
T ss_pred Hhc------CCCEEEEECCccccCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 998 99999999998876655543 566667666555789999999987542 46666665
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-20 Score=210.66 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=142.5
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +++|+|+||+| ||+||||||||||+++|+| .|..|+|. ++|. ++.....
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~---idg~----~i~~~~~ 548 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL---FDGI----PREEIPR 548 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCE----eHHHCCH
Confidence 46899999999974 57999999999 9999999999999999944 67889999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+|. - |++||+.++. + .. ..+.+.++++.+|+...-.+. =.|++.
T Consensus 549 ~~lr~~i~~v~Q~~~lf~-g------Ti~eNi~l~~-~-~~----~~~~i~~al~~~~l~~~i~~l----p~gl~t---- 607 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFE-G------TVRDNLTLWD-P-TI----PDADLVRACKDAAIHDVITSR----PGGYDA---- 607 (710)
T ss_pred HHHHhheeEEecCChhhh-c------cHHHHhhCCC-C-CC----CHHHHHHHHHHhCCHHHHHhC----cCcccc----
Confidence 456678999999998883 3 8999999872 1 11 123455566666664311100 000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+. -..+||||+|+++|+
T Consensus 608 ---------------------------------------~i~e~---------------------G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 608 ---------------------------------------ELAEG---------------------GANLSGGQRQRLEIA 627 (710)
T ss_pred ---------------------------------------eeccC---------------------CCCCCHHHHHHHHHH
Confidence 01111 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+.+. +++++|+|||+.+-+..++. ++.+.|.+ .++|+++.+|.++... ...++.+++
T Consensus 628 Rall~------~p~iliLDEptS~LD~~te~-----------~i~~~l~~---~~~T~IiitHrl~~i~--~~D~Iivl~ 685 (710)
T TIGR03796 628 RALVR------NPSILILDEATSALDPETEK-----------IIDDNLRR---RGCTCIIVAHRLSTIR--DCDEIIVLE 685 (710)
T ss_pred HHHhh------CCCEEEEECccccCCHHHHH-----------HHHHHHHh---cCCEEEEEecCHHHHH--hCCEEEEEe
Confidence 99999 99999999998775554443 55555553 4789999999876543 356666664
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-20 Score=183.09 Aligned_cols=202 Identities=15% Similarity=0.126 Sum_probs=141.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. + ++|+|. ++|..+.. ...
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~i~~--~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY---LDGVDIYD--PAV 77 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE---ECCEEccc--ccc
Confidence 478999999999888999999999 99999999999999999653 2 679999 88873211 001
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++ . |+.+|+.++...... ......+++..+++.+|+...
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~------t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------- 135 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFP-K------SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDE--------------- 135 (250)
T ss_pred cHHHHhhheEEEecCCccCc-c------hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchh---------------
Confidence 11233457999999988775 5 899999875211111 122234456666776666321
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.. ..+..+..+|+|++|++
T Consensus 136 ------------------------------------------------------l~~------~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 136 ------------------------------------------------------VKD------KLDKSALGLSGGQQQRL 155 (250)
T ss_pred ------------------------------------------------------HHH------HHhCCcccCCHHHHHHH
Confidence 000 01223556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++++|||..|-+..... .+.+.|.+..+ +.++++.+|+.+... .+..++.
T Consensus 156 ~laral~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tiii~sh~~~~~~-~~~~~i~ 216 (250)
T PRK14266 156 CIARTIAV------SPEVILMDEPCSALDPISTT-----------KIEDLIHKLKE-DYTIVIVTHNMQQAT-RVSKYTS 216 (250)
T ss_pred HHHHHHHc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEECCHHHHH-hhcCEEE
Confidence 99999998 99999999998887665443 56666666543 678899999877443 3455555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 217 ~l 218 (250)
T PRK14266 217 FF 218 (250)
T ss_pred EE
Confidence 55
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-20 Score=211.76 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=134.1
Q ss_pred CCCCceeeecccccccccc---eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRKS---VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~---iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+|+||+++|+.++ ||+|+||.| ||||||||||||++.+| +..|..|+|+ ++|. ++.
T Consensus 346 ~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~---idG~----di~ 418 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL---IDGE----DIR 418 (1228)
T ss_pred ccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE---EcCc----cch
Confidence 3557899999999998774 999999999 99999999999999999 7789999999 8887 443
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..+..+|.|+|++.||. . |++||+.|++-. .+.+ .+.++....+... .+.+.-.|++.
T Consensus 419 ~~~~~~lr~~iglV~QePvlF~-~------tI~eNI~~G~~d--at~~----~i~~a~k~ana~~----fi~~lp~g~~T 481 (1228)
T KOG0055|consen 419 NLNLKWLRSQIGLVSQEPVLFA-T------TIRENIRYGKPD--ATRE----EIEEAAKAANAHD----FILKLPDGYDT 481 (1228)
T ss_pred hcchHHHHhhcCeeeechhhhc-c------cHHHHHhcCCCc--ccHH----HHHHHHHHccHHH----HHHhhHHhhcc
Confidence 4445566778999999998774 4 899999999422 1122 2222222222211 11111111110
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.+|+. -..+||||+||
T Consensus 482 -------------------------------------------~vge~---------------------g~qLSGGQKQR 497 (1228)
T KOG0055|consen 482 -------------------------------------------LVGER---------------------GVQLSGGQKQR 497 (1228)
T ss_pred -------------------------------------------cccCC---------------------CCCCChHHHHH
Confidence 01221 23499999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
++|+++++. +|+++++|||+.+.+...+ ...+-.-+....+||+++..|.+.
T Consensus 498 IAIARalv~------~P~ILLLDEaTSaLD~~se------------~~Vq~ALd~~~~grTTivVaHRLS 549 (1228)
T KOG0055|consen 498 IAIARALVR------NPKILLLDEATSALDAESE------------RVVQEALDKASKGRTTIVVAHRLS 549 (1228)
T ss_pred HHHHHHHHh------CCCEEEecCcccccCHHHH------------HHHHHHHHHhhcCCeEEEEeeehh
Confidence 999999999 9999999999666544333 222222234567889999888765
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-20 Score=192.62 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=136.5
Q ss_pred Cceeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|+|+||++.|+.++ +|+++||+| ||+|+|||||||+||+|+. ...+|+|+ ++|. ++.....+.
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~---IdG~----dik~~~~~S 422 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL---IDGQ----DIKEVSLES 422 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEE---ECCe----eHhhhChHH
Confidence 4699999999999887 999999999 9999999999999999922 23899999 8998 444444556
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+||||||..||.. |+.+|+.+|+... +.+ .+-++.+..|+.+ .+..+..
T Consensus 423 lR~~Ig~VPQd~~LFnd-------TIl~NI~YGn~sa--s~e----eV~e~~k~a~~hd--------~i~~l~~------ 475 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-------TILYNIKYGNPSA--SDE----EVVEACKRAGLHD--------VISRLPD------ 475 (591)
T ss_pred hhhheeEeCCcccccch-------hHHHHhhcCCCCc--CHH----HHHHHHHHcCcHH--------HHHhccc------
Confidence 67789999999999854 7999999995332 222 2333334444432 1111100
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
||.+ .||+.| ..+|||++|+++++++
T Consensus 476 --------------GY~T-------------------~VGerG---------------------~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 476 --------------GYQT-------------------LVGERG---------------------LMLSGGEKQRVSLARA 501 (591)
T ss_pred --------------cchh-------------------hHhhcc---------------------cccccchHHHHHHHHH
Confidence 1111 134444 2479999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
.+. ++.++++|||+.-.+...+. .+.+++.. .-.+||+++..|+++...
T Consensus 502 ~lK------da~Il~~DEaTS~LD~~TE~-----------~i~~~i~~-~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 502 FLK------DAPILLLDEATSALDSETER-----------EILDMIMD-VMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred Hhc------CCCeEEecCcccccchhhHH-----------HHHHHHHH-hcCCCeEEEEEecchhHh
Confidence 999 99999999996644433332 23333333 345899999999988765
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-20 Score=207.88 Aligned_cols=199 Identities=17% Similarity=0.133 Sum_probs=141.6
Q ss_pred Cceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|+ ++++|+|+||+| ||+||||||||||+++|++ .|.+|+|. ++|. ++.....
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~---idg~----~i~~~~~ 522 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF---YDGQ----DLAGLDV 522 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCE----EcCcCCH
Confidence 4699999999995 357999999999 9999999999999999944 57789999 8887 3333334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+|+ - |++||+.+++ + .+ .+.+..+++.+|+...-.+.. .|++.
T Consensus 523 ~~lr~~i~~v~Q~~~lf~-g------TI~eNi~~~~-~--~~----~e~i~~al~~a~l~~~i~~lp----~G~dt---- 580 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMS-G------SIFENIAGGA-P--LT----LDEAWEAARMAGLAEDIRAMP----MGMHT---- 580 (686)
T ss_pred HHHHhccEEEccCCccCc-c------cHHHHHhcCC-C--CC----HHHHHHHHHHcCcHHHHHhcc----ccccc----
Confidence 456678999999999884 3 8999999873 2 12 234556677776653111100 00000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+ .-..+|+||+|+++|+
T Consensus 581 ---------------------------------------~ige---------------------~G~~LSGGQrQRialA 600 (686)
T TIGR03797 581 ---------------------------------------VISE---------------------GGGTLSGGQRQRLLIA 600 (686)
T ss_pred ---------------------------------------cccC---------------------CCCCCCHHHHHHHHHH
Confidence 0111 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+.+. +++++|+|||+.+-+..++. ++.+.|.+. ++|+++.+|...... ...++.+++
T Consensus 601 RAll~------~p~iLiLDEpTS~LD~~te~-----------~i~~~L~~~---~~T~IiItHr~~~i~--~~D~Iivl~ 658 (686)
T TIGR03797 601 RALVR------KPRILLFDEATSALDNRTQA-----------IVSESLERL---KVTRIVIAHRLSTIR--NADRIYVLD 658 (686)
T ss_pred HHHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHh---CCeEEEEecChHHHH--cCCEEEEEE
Confidence 99999 99999999998876655543 555555543 478899999875443 356666653
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-20 Score=177.23 Aligned_cols=167 Identities=24% Similarity=0.270 Sum_probs=128.7
Q ss_pred ceeeecccccccc------cceeecceEEE------EEEcCCCCCHHHHHHHHhc----CCCCCCeeecccCCccceecc
Q psy91 79 YIGFATLPEQVHR------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL----SDLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 79 ~i~~~~l~~~~~~------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~----~~~~G~i~~~~~~G~~~~~~~ 142 (541)
.+.++++++.|++ +.+|+++||+| +|+|||||||||||++|++ .+..|+|. ++|+.+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~---~~g~~~---- 75 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL---INGRPL---- 75 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE---ECCEeC----
Confidence 4789999999976 67999999999 9999999999999999955 56789999 888732
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.. ...++.++|++|+..+++.+ |+.+|+.++. ..
T Consensus 76 ~~---~~~~~~i~~~~q~~~~~~~~------t~~~~i~~~~------------~~------------------------- 109 (194)
T cd03213 76 DK---RSFRKIIGYVPQDDILHPTL------TVRETLMFAA------------KL------------------------- 109 (194)
T ss_pred ch---HhhhheEEEccCcccCCCCC------cHHHHHHHHH------------Hh-------------------------
Confidence 11 13345789999998888888 8888775430 00
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
. .+|+|++|
T Consensus 110 -----------------------------------------------------------------~------~LS~G~~q 118 (194)
T cd03213 110 -----------------------------------------------------------------R------GLSGGERK 118 (194)
T ss_pred -----------------------------------------------------------------c------cCCHHHHH
Confidence 0 47889999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..... .+.+.|.+..+.++++++.+|+.+.+...+..+
T Consensus 119 rv~laral~~------~p~illlDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 119 RVSIALELVS------NPSLLFLDEPTSGLDSSSAL-----------QVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 9999999998 99999999998876655543 566666666555889999999986333335555
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 182 v~~l 185 (194)
T cd03213 182 LLLL 185 (194)
T ss_pred EEEE
Confidence 5554
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-20 Score=183.02 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=139.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.|.++|++++|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+.....
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~---~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII---LHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE---EcCcccccccc
Confidence 45689999999999889999999999 999999999999999996642 578998 77762210000
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhH-hHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRK-SVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~-e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....+.... ...+.+..+++.+|+.. .
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~--------- 150 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFP-K------SIFENVAYGLRIRGVKRRSILEERVENALRNAALWD----E--------- 150 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCc-c------hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch----h---------
Confidence 1111233557999999987775 5 899999775211111111 11233444455444321 0
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.. ..+..+..+|+|++|
T Consensus 151 --------------------------------------------------------l~~------~~~~~~~~LS~G~~q 168 (265)
T PRK14252 151 --------------------------------------------------------VKD------RLGDLAFNLSGGQQQ 168 (265)
T ss_pred --------------------------------------------------------hhH------HHhCCcccCCHHHHH
Confidence 000 112234568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+.+... .++.+
T Consensus 169 rv~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~-~~tiiivth~~~~~~-~~~d~ 229 (265)
T PRK14252 169 RLCIARALAT------DPEILLFDEPTSALDPIATA-----------SIEELISDLKN-KVTILIVTHNMQQAA-RVSDY 229 (265)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHh-CCEEEEEecCHHHHH-HhCCE
Confidence 9999999998 99999999998887665543 56666666544 578889999876543 34556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 230 i~~l~ 234 (265)
T PRK14252 230 TAYMY 234 (265)
T ss_pred EEEEE
Confidence 66653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-20 Score=204.11 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=143.8
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|++++++++|++ +++|+|+||++ ||+|+||||||||+++|++ .|..|.|. ++|. ++......
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~---idg~----~i~~~~~~ 411 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR---LDGR----PLSSLSHS 411 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE---ECCE----EhhhCCHH
Confidence 46999999999965 57999999999 9999999999999999944 57789999 8887 33333344
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+|+. |+++|+.++. + .. .+.+..+++.+|+...-++ .=.|++..
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-------Ti~~NI~~~~-~--~~----d~~i~~a~~~~gl~~~i~~----lp~Gldt~---- 469 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-------TFLANVTLGR-D--IS----EEQVWQALETVQLAELARS----LPDGLYTP---- 469 (592)
T ss_pred HHHhheEEEccCCccccc-------hHHHHHHhCC-C--CC----HHHHHHHHHHcCcHHHHHh----cccccccc----
Confidence 566789999999999853 8999999983 2 11 2345667777776541111 00011100
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+|+ .-..+|+||+|+++|+|
T Consensus 470 ---------------------------------------i~e---------------------~g~~LSGGqrQRialAR 489 (592)
T PRK10790 470 ---------------------------------------LGE---------------------QGNNLSVGQKQLLALAR 489 (592)
T ss_pred ---------------------------------------ccC---------------------CCCCCCHHHHHHHHHHH
Confidence 011 12358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+..++. ++.+.|.+.. .++|+++.+|...... ...++.+++
T Consensus 490 aLl~------~~~illlDEpts~LD~~t~~-----------~i~~~l~~~~-~~~tvIivtHr~~~l~--~~D~ii~l~ 548 (592)
T PRK10790 490 VLVQ------TPQILILDEATANIDSGTEQ-----------AIQQALAAVR-EHTTLVVIAHRLSTIV--EADTILVLH 548 (592)
T ss_pred HHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHh-CCCEEEEEecchHHHH--hCCEEEEEE
Confidence 9998 99999999998776655543 5556665543 3688999999875443 345555554
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-20 Score=200.77 Aligned_cols=208 Identities=16% Similarity=0.138 Sum_probs=145.4
Q ss_pred CCceeeeccccccc-----ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccC-Cccceecc
Q psy91 77 RDYIGFATLPEQVH-----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVN-GSNTVIEV 142 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~-G~~~~~~~ 142 (541)
.+.+.++||++.|+ .+.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++ |.... .+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~---~~~g~~~~-~~ 352 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN---VRVGDEWV-DM 352 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---EecCCccc-cc
Confidence 34699999999995 257999999999 9999999999999999955 46789998 64 43110 01
Q ss_pred ccc---ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 143 AGT---KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 143 ~~~---~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
... .....++.++||+|+..+++.+ ||.+|+.+.. ...........++..+++.+|+.+...
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~------tv~e~l~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~-------- 417 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHR------TVLDNLTEAI-GLELPDELARMKAVITLKMVGFDEEKA-------- 417 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCC------cHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCCCCccc--------
Confidence 110 0112234699999999899889 9999997641 111122223345566677666642000
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
. -+.++.+..+|+|
T Consensus 418 -----------------------------------------------------------------~-~~~~~~~~~LSgG 431 (520)
T TIGR03269 418 -----------------------------------------------------------------E-EILDKYPDELSEG 431 (520)
T ss_pred -----------------------------------------------------------------h-hhhhCChhhCCHH
Confidence 0 0123456679999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERG 378 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~ 378 (541)
++|++.|+++++. +++++|+|||..|.+..+.. ++.+.|.+..+. +.++++.+|+++... .
T Consensus 432 q~qrv~laral~~------~p~lLllDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vsHd~~~~~-~ 493 (520)
T TIGR03269 432 ERHRVALAQVLIK------EPRIVILDEPTGTMDPITKV-----------DVTHSILKAREEMEQTFIIVSHDMDFVL-D 493 (520)
T ss_pred HHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHcCcEEEEEeCCHHHHH-H
Confidence 9999999999998 99999999998886655543 677777766543 788999999987543 3
Q ss_pred ccceeEEEc
Q psy91 379 VKLRLTVVD 387 (541)
Q Consensus 379 l~~rvnvIp 387 (541)
+..++.++.
T Consensus 494 ~~d~i~~l~ 502 (520)
T TIGR03269 494 VCDRAALMR 502 (520)
T ss_pred hCCEEEEEE
Confidence 566666663
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=217.58 Aligned_cols=188 Identities=20% Similarity=0.232 Sum_probs=143.7
Q ss_pred ceeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-----CCCCeeecccCCccceeccc
Q psy91 79 YIGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-----LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 79 ~i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-----~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.++||++.|+ .+.+|+|||+.+ ||+|||||||||||++|++.. .+|+|. ++|.. ..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~---i~G~~----~~ 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL---VNGRP----LD 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE---ECCEE----CC
Confidence 478999999885 457999999999 999999999999999997764 458888 78872 21
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccc---cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT---LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
...++.+|||+|++.+++.+ ||+|++.|+. .+...+..+..++++++++.+|+.++.++.++
T Consensus 832 ----~~~~~~i~yv~Q~~~~~~~~------Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~----- 896 (1394)
T TIGR00956 832 ----SSFQRSIGYVQQQDLHLPTS------TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG----- 896 (1394)
T ss_pred ----hhhhcceeeecccccCCCCC------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-----
Confidence 12355799999999999999 9999999862 22233445556678888998888654222111
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
. ....+|+|+
T Consensus 897 -------------------------------------------------~---------------------~~~~LSgGq 906 (1394)
T TIGR00956 897 -------------------------------------------------V---------------------PGEGLNVEQ 906 (1394)
T ss_pred -------------------------------------------------C---------------------CCCCCCHHH
Confidence 0 011589999
Q ss_pred CcceEEeeeEEEeeecCeeee-EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 301 GKTTTIEKKSMDIEERGVKLR-LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~-L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+|+++|+++++. +++ ++++|||+.|.+..+.. .+.+.|.+..+.++++++.+|+.+..
T Consensus 907 rqRl~Ia~aL~~------~P~~iLlLDEPTsgLD~~~~~-----------~i~~~L~~la~~g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 907 RKRLTIGVELVA------KPKLLLFLDEPTSGLDSQTAW-----------SICKLMRKLADHGQAILCTIHQPSAI 965 (1394)
T ss_pred hhHHHHHHHHHc------CCCeEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHHcCCEEEEEecCCCHH
Confidence 999999999998 996 99999998886655443 66777777766789999999988743
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-20 Score=175.63 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=127.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.+++++++|+++.+++ +||+| +|+||||||||||+++|+| .+.+|+|+ ++|..+ ... ..
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i----~~~----~~ 69 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY---YKNCNI----NNI----AK 69 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCccc----Chh----hh
Confidence 67899999998776665 99999 9999999999999999955 57789999 888732 111 12
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..++|++|+..+++.. |+.+|+.+...... ..+.+..+++.+|+..
T Consensus 70 ~~~~~~~~~~~~~~~~------tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~----------------------- 115 (195)
T PRK13541 70 PYCTYIGHNLGLKLEM------TVFENLKFWSEIYN-----SAETLYAAIHYFKLHD----------------------- 115 (195)
T ss_pred hhEEeccCCcCCCccC------CHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHh-----------------------
Confidence 3579999988777778 99999977521110 1123334444444321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 116 --------------------------------------------------------~~~~~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 116 --------------------------------------------------------LLDEKCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred --------------------------------------------------------hhccChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
. +++++|+|||..|.+..... .+.+++.+..+.++++++.+|+.+..
T Consensus 140 ~------~p~~lllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 140 C------QSDLWLLDEVETNLSKENRD-----------LLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred c------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 8 99999999998876655443 56666665545678889999887643
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-20 Score=186.35 Aligned_cols=201 Identities=15% Similarity=0.163 Sum_probs=136.9
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
+++.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+..
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~---i~g~~i~~-- 116 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE---LDGQDIYQ-- 116 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEccc--
Confidence 345689999999999889999999999 99999999999999999664 3689999 88873211
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccc------------hh-hHhHhhhHHHHHHHhCCCCc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ------------VH-RKSVKKGFDFTLMVVGESGL 209 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~------------~~-~~e~~~~v~~~L~~vGL~g~ 209 (541)
........++.++|++|+..+++ . |+++|+.++..... .. .....+.+..++..+|+...
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP-K------SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc-c------cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 01111223457999999987775 6 89999987621110 00 00111223333333332110
Q ss_pred cchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCC
Q psy91 210 GKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 210 ~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
+. . ..
T Consensus 190 ---------------------------------------------------------------------~~-----~-~~ 194 (305)
T PRK14264 190 ---------------------------------------------------------------------VN-----D-RL 194 (305)
T ss_pred ---------------------------------------------------------------------hh-----H-Hh
Confidence 00 0 11
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+ +.++++.+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~------~p~lLLLDEPtsgLD~~~~~-----------~l~~~L~~~~~-~~tiiivt 256 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAV------DPEVILMDEPASALDPIATS-----------KIEDLIEELAE-EYTVVVVT 256 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEE
Confidence 33456799999999999999998 99999999998887665543 56666666554 37888999
Q ss_pred ccchhhhhcccce
Q psy91 370 KSMDIEERGVKLR 382 (541)
Q Consensus 370 ~~~di~~~~l~~r 382 (541)
|+.+... .+..+
T Consensus 257 H~~~~i~-~~~d~ 268 (305)
T PRK14264 257 HNMQQAA-RISDQ 268 (305)
T ss_pred cCHHHHH-HhcCE
Confidence 9887543 23444
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-19 Score=180.43 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=134.2
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C----CCCCeeecccCCccceecccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D----LYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~----~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.++|++++| ++.+|+++||+| +|+|||||||||||++|+|. + ++|+|+ ++|..+ ..
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~---~~g~~i----~~-- 73 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL---LDGKPV----AP-- 73 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE---ECCeec----cc--
Confidence 58899999999 578999999999 99999999999999999654 4 679999 888732 11
Q ss_pred cccccccEEEEeCCCc--cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
....++.++||+|+.. +.+.+ ++.+++.+.....+... ..+.+..+++.+|+....
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~-------------- 131 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLH------TMHTHARETCLALGKPA--DDATLTAALEAVGLENAA-------------- 131 (254)
T ss_pred cccccceEEEEecCCccccCccc------cHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChh--------------
Confidence 1122356999999974 33445 66666543200001111 123455566666653200
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ +.+..+..+|+|++|++
T Consensus 132 ----------------------------------------------------~----------~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 132 ----------------------------------------------------R----------VLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ----------------------------------------------------h----------hhhcCCcccCHHHHHHH
Confidence 0 11233556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ .++++++.+|+.+... .+..++
T Consensus 150 ~laral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~til~~sH~~~~~~-~~~d~v 211 (254)
T PRK10418 150 MIALALLC------EAPFIIADEPTTDLDVVAQA-----------RILDLLESIVQKRALGMLLVTHDMGVVA-RLADDV 211 (254)
T ss_pred HHHHHHhc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHHHhcCcEEEEEecCHHHHH-HhCCEE
Confidence 99999998 99999999998876654442 55666666544 3788999999876533 344555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 212 ~~l~ 215 (254)
T PRK10418 212 AVMS 215 (254)
T ss_pred EEEE
Confidence 5553
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-20 Score=203.58 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=143.2
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +++|+|+|++| ||+||||||||||+++|+| .|..|+|+ ++|. .......
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~---i~g~----~i~~~~~ 412 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL---LDGH----DLRDYTL 412 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE---ECCE----EhhhcCH
Confidence 36999999999965 57999999999 9999999999999999954 57789999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.++||+|++.+|+ - |++||+.+++ +... ..+.+..+++.+|+...-.+ +
T Consensus 413 ~~~~~~i~~v~Q~~~lf~-~------Ti~~Ni~~~~-~~~~----~~~~i~~al~~~~l~~~i~~--------l------ 466 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFN-D------TIANNIAYAR-TEQY----SREQIEEAARMAYAMDFINK--------M------ 466 (582)
T ss_pred HHHHhhceEEccCceeec-c------hHHHHHhcCC-CCCC----CHHHHHHHHHHhCcHHHHHh--------c------
Confidence 345667999999999885 4 8999999873 1111 23345566776666541111 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|.+- .+|+ .-..+|||++|++.|+
T Consensus 467 ------------------------------p~Gldt---~ig~---------------------~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 467 ------------------------------DNGLDT---VIGE---------------------NGVLLSGGQRQRIAIA 492 (582)
T ss_pred ------------------------------ccccCc---eeCC---------------------CCCcCCHHHHHHHHHH
Confidence 001100 0111 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+.+-+..++. .+.+.+.+. ..++|+++.+|+.... +...++.+++
T Consensus 493 Rall~------~~~ililDEptsaLD~~t~~-----------~i~~~l~~~-~~~~tvI~VtHr~~~~--~~~D~Ii~l~ 552 (582)
T PRK11176 493 RALLR------DSPILILDEATSALDTESER-----------AIQAALDEL-QKNRTSLVIAHRLSTI--EKADEILVVE 552 (582)
T ss_pred HHHHh------CCCEEEEECccccCCHHHHH-----------HHHHHHHHH-hCCCEEEEEecchHHH--HhCCEEEEEE
Confidence 99999 99999999997776655553 455555544 3468999999987543 3456666664
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-20 Score=207.80 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=142.5
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++||+++|+ ++++|+|+|++| ||+||||||||||+++|+ ..|..|+|+ ++|. ++......
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~---idg~----~i~~~~~~ 544 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL---LNGF----SLKDIDRH 544 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE---ECCE----EHHHcCHH
Confidence 4699999999997 467999999999 999999999999999994 467889999 8887 33333344
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||+|++.+|+ - |++||+.++..+ ..+ .+.+.+++...|+.+.-.+ .=.|++.
T Consensus 545 ~lr~~i~~v~Q~~~lf~-g------TI~eNi~l~~~~-~~~----~~~i~~a~~~a~l~~~i~~----lp~gldt----- 603 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFS-G------SILENLLLGAKE-NVS----QDEIWAACEIAEIKDDIEN----MPLGYQT----- 603 (708)
T ss_pred HHHHheEEEecCceehh-H------HHHHHHhccCCC-CCC----HHHHHHHHHHhCCHHHHHh----cccccCc-----
Confidence 55678999999999884 3 899999987212 111 2344556666665431110 0000000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+|+ ....+|+||+|++.|+|
T Consensus 604 --------------------------------------~i~e---------------------~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 604 --------------------------------------ELSE---------------------EGSSISGGQKQRIALAR 624 (708)
T ss_pred --------------------------------------EecC---------------------CCCCCCHHHHHHHHHHH
Confidence 0111 12358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|||+.+-+..++. .+.+.|.+. .++|+++.+|...... ...++.+++
T Consensus 625 all~------~p~iliLDE~Ts~LD~~te~-----------~i~~~L~~~--~~~T~IiitHr~~~~~--~~D~i~~l~ 682 (708)
T TIGR01193 625 ALLT------DSKVLILDESTSNLDTITEK-----------KIVNNLLNL--QDKTIIFVAHRLSVAK--QSDKIIVLD 682 (708)
T ss_pred HHhh------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHh--cCCEEEEEecchHHHH--cCCEEEEEE
Confidence 9999 99999999998776554443 555666542 3688999999876543 456666664
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-20 Score=202.96 Aligned_cols=202 Identities=21% Similarity=0.291 Sum_probs=140.3
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++|+++.|+ ++++|+|+||++ ||+||||||||||+++| +..+..|+|. ++|. ++......
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~---idg~----dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL---IDGI----DIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE---ECCE----ehhhcCHH
Confidence 4599999999999 689999999999 99999999999999999 4556789999 7887 44444445
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+++|+|+..||. - |+++|+.+++-. .+. +.+.+++...++.+ .+..+ |+
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~------TI~~NI~~g~~~--at~----eei~~a~k~a~~~d--------~I~~l--p~--- 453 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-G------TIRENIALGRPD--ATD----EEIEEALKLANAHE--------FIANL--PD--- 453 (567)
T ss_pred HHHHhccEEcccceeec-c------cHHHHHhcCCCC--CCH----HHHHHHHHHhChHH--------HHHhC--cc---
Confidence 66778999999999996 5 899999999421 222 23334444443322 11111 00
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
||.+ ++|+. -..+|+||+|+++|+|
T Consensus 454 ---------------g~dt-------------------~vge~---------------------G~~LSgGQrQrlaiAR 478 (567)
T COG1132 454 ---------------GYDT-------------------IVGER---------------------GVNLSGGQRQRLAIAR 478 (567)
T ss_pred ---------------cccc-------------------eecCC---------------------CccCCHHHHHHHHHHH
Confidence 0000 11222 2358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|||+..-+..++. .+.+.+.+.. .+||+++..|.+.-... ..++.|++
T Consensus 479 all~------~~~ILILDEaTSalD~~tE~-----------~I~~~l~~l~-~~rT~iiIaHRlsti~~--aD~IiVl~ 537 (567)
T COG1132 479 ALLR------NPPILILDEATSALDTETEA-----------LIQDALKKLL-KGRTTLIIAHRLSTIKN--ADRIIVLD 537 (567)
T ss_pred HHhc------CCCEEEEeccccccCHHhHH-----------HHHHHHHHHh-cCCEEEEEeccHhHHHh--CCEEEEEE
Confidence 9999 99999999996654444432 4555555444 45788888888653332 55666664
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-20 Score=180.91 Aligned_cols=197 Identities=11% Similarity=0.125 Sum_probs=133.5
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
+++||++. .+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|+. +.......+++.
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~---~~g~~----i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQ---FAGQP----LEAWSAAELARH 70 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEE---ECCEe----cCcCCHHHHhhh
Confidence 46777775 3899999998 99999999999999999543 4589999 88872 222122223346
Q ss_pred EEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCC
Q psy91 154 WGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 233 (541)
Q Consensus 154 ~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~ 233 (541)
++|++|+..+++.+ |+.+|+.+... .........+.+.++++.+|+..
T Consensus 71 i~~v~q~~~~~~~~------tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~------------------------- 118 (248)
T PRK03695 71 RAYLSQQQTPPFAM------PVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDD------------------------- 118 (248)
T ss_pred eEEecccCccCCCc------cHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHh-------------------------
Confidence 89999998888888 99999887621 11122223345556666665532
Q ss_pred CCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEe
Q psy91 234 EKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI 313 (541)
Q Consensus 234 ~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i 313 (541)
..+..+..+|+|++|++.|+++++.-
T Consensus 119 ------------------------------------------------------~~~~~~~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 119 ------------------------------------------------------KLGRSVNQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred ------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 11223456899999999999998630
Q ss_pred -eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 314 -EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 314 -~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
....-+++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+++... +++.++.++
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 206 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQA-----------ALDRLLSELCQQGIAVVMSSHDLNHTL-RHADRVWLL 206 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 0000035999999998876655443 666777666556789999999987432 355565555
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-19 Score=192.03 Aligned_cols=199 Identities=22% Similarity=0.273 Sum_probs=144.1
Q ss_pred eeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++++++.|++. ++++++|+++ ||+|+||||||||+++|+| .+..|+|. ++|. .........+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~---vng~----~l~~l~~~~~ 393 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR---VNGI----DLRDLSPEAW 393 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEE---ECCc----cccccCHHHH
Confidence 4445999999875 8999999999 9999999999999999955 56789999 8887 3333334466
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++++++|+|++.+++. |++||+.|++.. ...+.+.++++..|+.+.-.. +
T Consensus 394 ~k~i~~v~Q~p~lf~g-------TireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-----------p------ 443 (559)
T COG4988 394 RKQISWVSQNPYLFAG-------TIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-----------P------ 443 (559)
T ss_pred HhHeeeeCCCCccccc-------cHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-----------C------
Confidence 7899999999988843 899999998321 223456677888887652110 0
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+|.+ .++|+.| ..+|+||.||+.++|+.
T Consensus 444 ----------------------------~GLd---t~ige~G---------------------~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 444 ----------------------------DGLD---TVIGEGG---------------------AGLSGGQAQRLALARAL 471 (559)
T ss_pred ----------------------------Cccc---chhccCC---------------------CCCCHHHHHHHHHHHHh
Confidence 1111 1123333 35899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.. +.++.++|||+.+-+..++. .+.+.+.+..+. +|+++.+|.+... .-..++.+++
T Consensus 472 l~------~~~l~llDEpTA~LD~etE~-----------~i~~~l~~l~~~-ktvl~itHrl~~~--~~~D~I~vld 528 (559)
T COG4988 472 LS------PASLLLLDEPTAHLDAETEQ-----------IILQALQELAKQ-KTVLVITHRLEDA--ADADRIVVLD 528 (559)
T ss_pred cC------CCCEEEecCCccCCCHhHHH-----------HHHHHHHHHHhC-CeEEEEEcChHHH--hcCCEEEEec
Confidence 98 89999999999988777664 444555555544 8888888875432 3345666665
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-19 Score=172.36 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=127.2
Q ss_pred eeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
++++||++.|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~---~~g----------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS---VPG----------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE---EcC-----------
Confidence 4688999999764 6999999999 9999999999999999955 46677777 555
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++|++|+..++ .. |++||+.+.... .. .....++..+++... +... +
T Consensus 67 ------~i~~~~q~~~l~-~~------t~~enl~~~~~~---~~----~~~~~~~~~~~l~~~--------~~~~--~-- 114 (204)
T cd03250 67 ------SIAYVSQEPWIQ-NG------TIRENILFGKPF---DE----ERYEKVIKACALEPD--------LEIL--P-- 114 (204)
T ss_pred ------EEEEEecCchhc-cC------cHHHHhccCCCc---CH----HHHHHHHHHcCcHHH--------HHhc--c--
Confidence 489999998876 56 999999886211 11 112223333333210 0000 0
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.|. .. ..+..+..+|+|++|++.|
T Consensus 115 ----------------------------------------------~~~---------~~-~~~~~~~~lS~G~~qrv~l 138 (204)
T cd03250 115 ----------------------------------------------DGD---------LT-EIGEKGINLSGGQKQRISL 138 (204)
T ss_pred ----------------------------------------------Ccc---------cc-eecCCCCcCCHHHHHHHHH
Confidence 000 00 1123355789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhh-hhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ-YFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~-~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..... .+.+ ++.+..+.++++++.+|+.+.... ..++.+
T Consensus 139 aral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~ 199 (204)
T cd03250 139 ARAVYS------DADIYLLDDPLSAVDAHVGR-----------HIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVV 199 (204)
T ss_pred HHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEE
Confidence 999999 99999999998887665442 4444 344444457899999999776553 455544
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 200 l 200 (204)
T cd03250 200 L 200 (204)
T ss_pred E
Confidence 4
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-19 Score=206.23 Aligned_cols=201 Identities=20% Similarity=0.241 Sum_probs=140.5
Q ss_pred CCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|+++||+++|++ +++|+|+||+| ||+||||||||||+++| ...+.+|+|. ++|. .+...
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~---idg~----~i~~~ 548 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL---LDGV----PLVQY 548 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE---ECCE----EHHhc
Confidence 356999999999974 46999999999 99999999999999999 4467789999 8887 33333
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.++||+|++.+|. - |++||+.++. +. .+ .+.+..+++.+|+...-.+ + +
T Consensus 549 ~~~~lr~~i~~v~Q~~~lF~-g------TIreNI~~g~-~~-~~----~e~i~~al~~a~l~~~i~~--------l--p- 604 (711)
T TIGR00958 549 DHHYLHRQVALVGQEPVLFS-G------SVRENIAYGL-TD-TP----DEEIMAAAKAANAHDFIME--------F--P- 604 (711)
T ss_pred CHHHHHhhceEEecCccccc-c------CHHHHHhcCC-CC-CC----HHHHHHHHHHcCCHHHHHh--------C--C-
Confidence 33445668999999999884 3 8999999983 11 11 2345566777666431111 0 0
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+|.+- .+|+ .-..+|+||+|+++
T Consensus 605 ---------------------------------~GldT---~ige---------------------~G~~LSGGQkQRla 627 (711)
T TIGR00958 605 ---------------------------------NGYDT---EVGE---------------------KGSQLSGGQKQRIA 627 (711)
T ss_pred ---------------------------------CccCC---cccC---------------------CCCcCCHHHHHHHH
Confidence 00000 0111 12358999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+|+.+. +++++|+|||+.+-+..++. .+.+ .....++|+++.+|.++... ...++.+
T Consensus 628 lARALl~------~p~ILILDEpTSaLD~~te~-----------~i~~---~~~~~~~TvIiItHrl~~i~--~aD~Iiv 685 (711)
T TIGR00958 628 IARALVR------KPRVLILDEATSALDAECEQ-----------LLQE---SRSRASRTVLLIAHRLSTVE--RADQILV 685 (711)
T ss_pred HHHHHhc------CCCEEEEEccccccCHHHHH-----------HHHH---hhccCCCeEEEEeccHHHHH--hCCEEEE
Confidence 9999999 99999999997765544332 3333 11235789999999976543 4567776
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 686 L~ 687 (711)
T TIGR00958 686 LK 687 (711)
T ss_pred EE
Confidence 64
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-19 Score=185.81 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=140.3
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceec
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~ 141 (541)
.+.|.++|+++.|. .+.+|+|+||+| ||+|||||||||||++|++. +.+|+|. ++|..+..
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~---idG~~i~~- 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY---FLGTNTRS- 153 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEccc-
Confidence 35799999999995 356999999999 99999999999999999654 3589999 88883311
Q ss_pred ccccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHh-HhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKS-VKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e-~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
........+..++||+|++.++. . |+++|+.|+....+....+ ..+.+..+++.+++..-
T Consensus 154 -~~~~~~~lr~~i~~v~q~~~~~~-~------ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------- 214 (329)
T PRK14257 154 -KKISSLELRTRIGMVFQKPTPFE-M------SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE----------- 214 (329)
T ss_pred -cccchHhhhccEEEEecCCccCC-C------cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch-----------
Confidence 01111234557999999988774 6 9999999863111122122 12234555655554210
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
+. + ..+.....+|+|+
T Consensus 215 l~------------------------------------------------------~----------~~~~~~~~LSgGq 230 (329)
T PRK14257 215 VK------------------------------------------------------D----------DLDKAGNALSGGQ 230 (329)
T ss_pred hh------------------------------------------------------h----------hhhCCcccCCHHH
Confidence 00 0 0122355789999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..... .+.+.+.+..+ ++++++.+|.++... .++
T Consensus 231 kqRl~LARAl~~------~p~IlLLDEPts~LD~~~~~-----------~i~~~i~~l~~-~~Tii~iTH~l~~i~-~~~ 291 (329)
T PRK14257 231 QQRLCIARAIAL------EPEVLLMDEPTSALDPIATA-----------KIEELILELKK-KYSIIIVTHSMAQAQ-RIS 291 (329)
T ss_pred HHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhC
Confidence 999999999998 99999999997776544432 45555555544 578899999877543 345
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 292 Driivl~ 298 (329)
T PRK14257 292 DETVFFY 298 (329)
T ss_pred CEEEEEE
Confidence 5666653
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-20 Score=170.76 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=117.4
Q ss_pred eeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
++++++++.|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|.. ........
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~---~~g~~----~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL---IDGVD----LRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE---ECCEE----hhhcCHHH
Confidence 4678999999876 7999999999 9999999999999999954 56789999 88872 22111222
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++|++|+..+++ . |+.||+
T Consensus 74 ~~~~i~~~~~~~~~~~-~------t~~e~l-------------------------------------------------- 96 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-G------TIRENI-------------------------------------------------- 96 (171)
T ss_pred HHhhEEEEcCCchhcc-c------hHHHHh--------------------------------------------------
Confidence 3456889988765543 4 555544
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+|+|++|++.|+++
T Consensus 97 ------------------------------------------------------------------LS~G~~~rl~la~a 110 (171)
T cd03228 97 ------------------------------------------------------------------LSGGQRQRIAIARA 110 (171)
T ss_pred ------------------------------------------------------------------hCHHHHHHHHHHHH
Confidence 67788999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... ++.+++.+..+ ++++++.+|+.+.... +.++.++
T Consensus 111 l~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 111 LLR------DPPILILDEATSALDPETEA-----------LILEALRALAK-GKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred Hhc------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHhcC-CCEEEEEecCHHHHHh--CCEEEEE
Confidence 988 99999999998887665543 56666665543 5788899998876542 5555554
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-19 Score=202.22 Aligned_cols=202 Identities=16% Similarity=0.226 Sum_probs=142.6
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++|++++|++ +.+|+|+|+++ ||+|+||||||||+++|+| .|.+|+|+ ++|. .+......
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~---i~g~----~i~~~~~~ 405 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL---IDGT----DIRTVTRA 405 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCE----EhhhCCHH
Confidence 46999999999975 57999999999 9999999999999999954 57789999 8887 33333334
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+++ - |++||+.+++ +. .+ .+.+..++..+|+... +..+ +
T Consensus 406 ~~r~~i~~v~Q~~~lf~-~------Ti~~Ni~~~~-~~-~~----d~~i~~al~~~~l~~~--------i~~l--p---- 458 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFN-R------SIEDNIRVGR-PD-AT----DEEMRAAAERAQAHDF--------IERK--P---- 458 (588)
T ss_pred HHHhheEEEecCccccc-c------cHHHHHhcCC-CC-CC----HHHHHHHHHHhCHHHH--------HHhC--c----
Confidence 55678999999998884 3 8999999873 11 11 2335556666665431 1000 0
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+|+ ++. .. .....+|+|++||++|+|
T Consensus 459 ------------------------------~gl------------------dt~-----i~-~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 459 ------------------------------DGY------------------DTV-----VG-ERGRQLSGGERQRLAIAR 484 (588)
T ss_pred ------------------------------ccc------------------cch-----hc-CCCCCCCHHHHHHHHHHH
Confidence 000 000 00 113358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+..+.. .+.+.+.+.. .++|+++.+|+..... ...++.++.
T Consensus 485 all~------~~~iliLDEpts~LD~~t~~-----------~i~~~l~~~~-~~~tvIiitHr~~~~~--~~D~ii~l~ 543 (588)
T PRK13657 485 ALLK------DPPILILDEATSALDVETEA-----------KVKAALDELM-KGRTTFIIAHRLSTVR--NADRILVFD 543 (588)
T ss_pred HHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHh-cCCEEEEEEecHHHHH--hCCEEEEEE
Confidence 9999 99999999998876665553 5555555442 4789999999876543 455666653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-20 Score=200.36 Aligned_cols=192 Identities=20% Similarity=0.224 Sum_probs=137.2
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++||+++|++ +++|+|+|++| ||+||||||||||+++|++ .+..|+|. ++|. .+.....
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~---~~g~----~i~~~~~ 391 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA---VNGV----PLADADA 391 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCE----ehhhCCH
Confidence 36999999999976 46999999999 9999999999999999944 67789999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.++||+|++.+++ . |++||+.++. +. . ..+.+..+++.+|+.+.-++.. .|++.
T Consensus 392 ~~lr~~i~~v~Q~~~lf~-~------ti~~Ni~~~~-~~-~----~~~~i~~a~~~~~l~~~i~~lp----~Gldt---- 450 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFA-G------TIAENIRLAR-PD-A----SDAEIRRALERAGLDEFVAALP----QGLDT---- 450 (529)
T ss_pred HHHHhheEEEcCCCcccC-c------CHHHHHhccC-CC-C----CHHHHHHHHHHcCcHHHHHhCc----ccccc----
Confidence 455678999999998884 4 8999999873 11 1 1234556666666654111100 00000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+ ....+|||++|+++|+
T Consensus 451 ---------------------------------------~v~e---------------------~g~~LSgGq~qri~la 470 (529)
T TIGR02857 451 ---------------------------------------LIGE---------------------GGAGLSGGQAQRLALA 470 (529)
T ss_pred ---------------------------------------hhcc---------------------ccccCCHHHHHHHHHH
Confidence 0111 2235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++++. +++++|+|||+.+-+..++. ++.+.+.+.. .++|+++.+|++...
T Consensus 471 Ral~~------~~~ililDE~ts~lD~~~~~-----------~i~~~l~~~~-~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 471 RAFLR------DAPLLLLDEPTAHLDAETEA-----------LVTEALRALA-QGRTVLLVTHRLALA 520 (529)
T ss_pred HHHhc------CCCEEEEeCcccccCHHHHH-----------HHHHHHHHhc-CCCEEEEEecCHHHH
Confidence 99999 99999999998876665553 4555555443 578999999987653
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-20 Score=178.88 Aligned_cols=185 Identities=18% Similarity=0.143 Sum_probs=128.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++++|+++||+| +|+||||||||||+++|++ .+.+|+|+ ++|+.+. .
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~~----~------- 88 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT---VRGRVSS----L------- 88 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEch----h-------
Confidence 67889999999999999999999 9999999999999999955 57789998 7776211 0
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..+...+.+.+ ||.+|+.++............+.+..+++.+|+..
T Consensus 89 -----~~~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 134 (224)
T cd03220 89 -----LGLGGGFNPEL------TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD----------------------- 134 (224)
T ss_pred -----hcccccCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 00112334556 99999876521111112222233444455444432
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 135 --------------------------------------------------------~~~~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 135 --------------------------------------------------------FIDLPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred --------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 159 ~------~p~llllDEP~~gLD~~~~~-----------~~~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 215 (224)
T cd03220 159 L------EPDILLIDEVLAVGDAAFQE-----------KCQRRLRELLKQGKTVILVSHDPSSIK-RLCDRALVL 215 (224)
T ss_pred c------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998886655443 566667666555788999999977543 234455544
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-19 Score=191.98 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=149.9
Q ss_pred Cceeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceec
Q psy91 78 DYIGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~ 141 (541)
+.++++||++.|... .+++||||+| ||+|.|||||||+.++|.+. ...|+|. ++|.++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~---~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI---LDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE---ECCcchhcC
Confidence 478999999999643 5999999999 99999999999999999332 2368888 888744332
Q ss_pred ccccccccccccEEEEeCCC--ccccccccccCCCcccceecc-ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 VAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFA-TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~-~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
........+.+.++||||++ .|.|-+ |+.+.+.-. .......+.+..+++.++|+.+|+.+-.
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~------tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~-------- 146 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVM------TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE-------- 146 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchh------hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh--------
Confidence 22222334567899999995 566767 776555433 1222234677888888999999986510
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
..+++++.+||
T Consensus 147 ---------------------------------------------------------------------~~~~yPheLSG 157 (539)
T COG1123 147 ---------------------------------------------------------------------RRDRYPHQLSG 157 (539)
T ss_pred ---------------------------------------------------------------------hhccCCcccCc
Confidence 00346788999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~ 377 (541)
|++||+.|+.+++. +|+|+|.|||+.+.++... .|+.+.|++..+ .+.++++.+|++.+...
T Consensus 158 G~rQRv~iAmALa~------~P~LLIaDEPTTaLDvt~q-----------~qIL~llk~l~~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 158 GMRQRVMIAMALAL------KPKLLIADEPTTALDVTTQ-----------AQILDLLKDLQRELGMAVLFITHDLGVVAE 220 (539)
T ss_pred hHHHHHHHHHHHhC------CCCEEEECCCccccCHHHH-----------HHHHHHHHHHHHHcCcEEEEEcCCHHHHHH
Confidence 99999999999999 9999999999766554433 377888887764 57788999999886643
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
++.++.|.
T Consensus 221 -~aDrv~Vm 228 (539)
T COG1123 221 -LADRVVVM 228 (539)
T ss_pred -hcCeEEEE
Confidence 55555544
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-19 Score=171.29 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=122.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-ccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK-VRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~-~~~ 149 (541)
.+.++|++++| +|+++||++ +|+|||||||||||++|++ .+.+|+|. ++|..+ .... ...
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~ 72 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT---LDGKPV----TRRSPRDA 72 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEC----CccCHHHH
Confidence 58899999998 999999999 9999999999999999955 56789999 888732 2111 112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++.++|++|+. .+++.+ |+.||+.+...
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~------t~~e~l~~~~~------------------------------------------ 104 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDL------SVAENIALSSL------------------------------------------ 104 (182)
T ss_pred HhCCeEEecCCcccCcccCCC------cHHHHHHHHhh------------------------------------------
Confidence 345789999984 567777 88887765410
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+|+|++|++.|
T Consensus 105 ---------------------------------------------------------------------LS~G~~qrl~l 115 (182)
T cd03215 105 ---------------------------------------------------------------------LSGGNQQKVVL 115 (182)
T ss_pred ---------------------------------------------------------------------cCHHHHHHHHH
Confidence 67899999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++++|||..|-+..... .+.+.+.+..+.++++++.+|+.+... .+..++.++
T Consensus 116 a~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~~~-~~~d~v~~l 177 (182)
T cd03215 116 ARWLAR------DPRVLILDEPTRGVDVGAKA-----------EIYRLIRELADAGKAVLLISSELDELL-GLCDRILVM 177 (182)
T ss_pred HHHHcc------CCCEEEECCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEe
Confidence 999998 99999999998876655443 566666665545788999999875332 344555554
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-19 Score=201.41 Aligned_cols=191 Identities=20% Similarity=0.246 Sum_probs=140.2
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC-----CCCeeecccCCccceecccccccccccccEEEEe
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL-----YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~-----~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+++.+|+|+|+++ ||+|||||||||||++|+|... .|+|. ++|.. ... ...++.+|||+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~---~~g~~----~~~---~~~~~~i~yv~ 105 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVL---LNGMP----IDA---KEMRAISAYVQ 105 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE---ECCEE----CCH---HHHhhhceeec
Confidence 4577999999999 9999999999999999977543 47788 77762 211 23455789999
Q ss_pred CCCccccccccccCCCcccceecc---ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCC
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFA---TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~---~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~ 235 (541)
|++.+++.+ ||+||+.|+ +.+....+++..++++.+++.+|+.++.++.++..
T Consensus 106 Q~~~~~~~l------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~------------------ 161 (617)
T TIGR00955 106 QDDLFIPTL------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP------------------ 161 (617)
T ss_pred cccccCccC------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCC------------------
Confidence 999999999 999999987 23333445566678899999999876543322210
Q ss_pred CCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeee
Q psy91 236 GSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315 (541)
Q Consensus 236 ~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e 315 (541)
.....+|+|++|+++|+++++.
T Consensus 162 -------------------------------------------------------~~~~~LSgGqrkRvsia~aL~~--- 183 (617)
T TIGR00955 162 -------------------------------------------------------GRVKGLSGGERKRLAFASELLT--- 183 (617)
T ss_pred -------------------------------------------------------CCCCCcCcchhhHHHHHHHHHc---
Confidence 0123489999999999999999
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++++|||..|.+..... .+.+.|++..+.++++++.+|...-+......++.++
T Consensus 184 ---~p~vlllDEPtsgLD~~~~~-----------~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 184 ---DPPLLFCDEPTSGLDSFMAY-----------SVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred ---CCCEEEeeCCCcchhHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 99999999998886655443 6666677666668999999998753322233444443
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-19 Score=173.93 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=131.1
Q ss_pred eeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 81 GFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 81 ~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.+.++.++|+ ++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+............+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH---WSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE---ECCcccccccccccchhhc
Confidence 4678888896 467999999999 9999999999999999965 46789999 8777321100000111234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..++ .. |+.+|+.+.. .. .. ..+..+++.+|+...
T Consensus 79 ~~i~~~~q~~~~~-~~------t~~~nl~~~~-~~--~~----~~~~~~~~~~~l~~~---------------------- 122 (218)
T cd03290 79 YSVAYAAQKPWLL-NA------TVEENITFGS-PF--NK----QRYKAVTDACSLQPD---------------------- 122 (218)
T ss_pred ceEEEEcCCCccc-cc------cHHHHHhhcC-cC--CH----HHHHHHHHHhCcHHH----------------------
Confidence 5699999998776 56 8999998752 11 11 112233444443210
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc-ccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~-~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
++.+- ..+...+..+..+|+|++|++.|++++
T Consensus 123 -----------------------------------------------~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral 155 (218)
T cd03290 123 -----------------------------------------------IDLLPFGDQTEIGERGINLSGGQRQRICVARAL 155 (218)
T ss_pred -----------------------------------------------HHhCcCccccCcccCCCcCCHHHHHHHHHHHHH
Confidence 00000 000011234567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhh--hhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ--YFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~--~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..+.. .+.+ ++....+.+.++++.+|+.+... ...++.++
T Consensus 156 ~~------~p~illlDEPt~~LD~~~~~-----------~l~~~~ll~~~~~~~~tii~~sH~~~~~~--~~d~i~~l 214 (218)
T cd03290 156 YQ------NTNIVFLDDPFSALDIHLSD-----------HLMQEGILKFLQDDKRTLVLVTHKLQYLP--HADWIIAM 214 (218)
T ss_pred hh------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHHHhcCCCEEEEEeCChHHHh--hCCEEEEe
Confidence 99 99999999998887655442 3333 33333344789999999987653 34555444
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-20 Score=171.54 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=119.9
Q ss_pred eeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|+++++++.|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ... ...
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~----~~~-~~~ 72 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT---LDGVPV----SDL-EKA 72 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE---ECCEEH----HHH-HHH
Confidence 4678999999765 7999999999 9999999999999999955 46789999 888722 111 112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++ . |++||+
T Consensus 73 ~~~~i~~~~q~~~~~~-~------tv~~~i-------------------------------------------------- 95 (178)
T cd03247 73 LSSLISVLNQRPYLFD-T------TLRNNL-------------------------------------------------- 95 (178)
T ss_pred HHhhEEEEccCCeeec-c------cHHHhh--------------------------------------------------
Confidence 3456899999876653 5 666654
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+..+|+|++|++.|+++
T Consensus 96 ---------------------------------------------------------------~~~LS~G~~qrv~lara 112 (178)
T cd03247 96 ---------------------------------------------------------------GRRFSGGERQRLALARI 112 (178)
T ss_pred ---------------------------------------------------------------cccCCHHHHHHHHHHHH
Confidence 22478899999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.+.+.+.. .++++++.+|+.+... ...++.++
T Consensus 113 l~~------~p~~lllDEP~~~LD~~~~~-----------~l~~~l~~~~-~~~tii~~sh~~~~~~--~~d~~~~l 169 (178)
T cd03247 113 LLQ------DAPIVLLDEPTVGLDPITER-----------QLLSLIFEVL-KDKTLIWITHHLTGIE--HMDKILFL 169 (178)
T ss_pred Hhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecCHHHHH--hCCEEEEE
Confidence 998 99999999998876655443 5556666554 3688899999988654 34566555
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-19 Score=173.59 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=123.2
Q ss_pred eeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-----CCCCCeeecccCCccceecccc
Q psy91 80 IGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-----DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 80 i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-----~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.++||++.|+ ++.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|..+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~---i~g~~~----~~ 76 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH---YNGIPY----KE 76 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE---ECCEEC----cc
Confidence 57888899885 457999999999 99999999999999999664 5689999 888732 11
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.. ...++.++|++|+..+++.+ ||++|+.++... .
T Consensus 77 ~~-~~~~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~------------~-------------------------- 111 (202)
T cd03233 77 FA-EKYPGEIIYVSEEDVHFPTL------TVRETLDFALRC------------K-------------------------- 111 (202)
T ss_pred ch-hhhcceEEEEecccccCCCC------cHHHHHhhhhhh------------c--------------------------
Confidence 11 12345799999999999888 999998764100 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.+..+..+|+|++|++
T Consensus 112 ----------------------------------------------------------------~~~~~~~LS~Ge~qrl 127 (202)
T cd03233 112 ----------------------------------------------------------------GNEFVRGISGGERKRV 127 (202)
T ss_pred ----------------------------------------------------------------cccchhhCCHHHHHHH
Confidence 0112345899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeec-cccchhhhhcccce
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIE-KKSMDIEERGVKLR 382 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~-~~~~di~~~~l~~r 382 (541)
.|+++++. +++++|+|||..|.+..... .+.+.+.+..+. +.++++. .|..+.. ..+..+
T Consensus 128 ~laral~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~t~ii~~~h~~~~~-~~~~d~ 189 (202)
T cd03233 128 SIAEALVS------RASVLCWDNSTRGLDSSTAL-----------EILKCIRTMADVLKTTTFVSLYQASDEI-YDLFDK 189 (202)
T ss_pred HHHHHHhh------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHhCCe
Confidence 99999999 99999999998876655443 566666666544 4555554 4443322 224445
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 190 i~~l 193 (202)
T cd03233 190 VLVL 193 (202)
T ss_pred EEEE
Confidence 4444
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-20 Score=183.05 Aligned_cols=200 Identities=14% Similarity=0.175 Sum_probs=137.8
Q ss_pred ceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.|.++|+++.| +...+|+++||+| +|+|||||||||||++|++. +.+|+|+ ++|..+ .......
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~---i~g~~i----~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQ---IDGVSW----NSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEE---ECCEEh----hhCCHHH
Confidence 47899999999 4567999999999 99999999999999999432 3689999 888732 2222223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|+..+++ . |+++|+.... ... .+.+..+++.+|+.+..+... .
T Consensus 75 lr~~i~~v~q~~~lf~-~------tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p----~---------- 126 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-G------TFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFP----G---------- 126 (275)
T ss_pred HhhhEEEECCCcccch-h------hHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCc----c----------
Confidence 4567999999998885 5 8999985321 111 123455666677643211110 0
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+..+. +++ ....+|+|++|++.|+++
T Consensus 127 ------------------------------~l~~~---~~~---------------------~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 127 ------------------------------QLDFV---LVD---------------------GGCVLSHGHKQLMCLARS 152 (275)
T ss_pred ------------------------------cccce---ecC---------------------CCCCCCHHHHHHHHHHHH
Confidence 00000 011 123589999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++++|+|||..+-+..... .+.+.|.+.. .++++++.+|+++... .+.++.++.
T Consensus 153 ll~------~p~illlDEpts~LD~~~~~-----------~l~~~l~~~~-~~~tii~isH~~~~i~--~~dri~vl~ 210 (275)
T cd03289 153 VLS------KAKILLLDEPSAHLDPITYQ-----------VIRKTLKQAF-ADCTVILSEHRIEAML--ECQRFLVIE 210 (275)
T ss_pred Hhc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEECCHHHHH--hCCEEEEec
Confidence 999 99999999998776555442 4555555443 3788999999987543 367777764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=174.28 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=123.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc-c
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
+.++|++++|+++.+|+++||++ +|+|||||||||||++|++. +.+|+|. ++|+.+ ..... .
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~---~~g~~~----~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL---FKGEDI----TDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE---ECCEEC----CcCCHHH
Confidence 46889999998888999999999 99999999999999999664 6789999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++|++|+..+++.. ++.+++ .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~------~~~~~l------------------------------------------~------ 99 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGV------KNADFL------------------------------------------R------ 99 (200)
T ss_pred HhhCcEEEeecChhhccCc------cHHHHH------------------------------------------h------
Confidence 1234589999987776655 544322 0
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.....+|+|++|++.|++
T Consensus 100 --------------------------------------------------------------~~~~~LS~G~~qrv~lar 117 (200)
T cd03217 100 --------------------------------------------------------------YVNEGFSGGEKKRNEILQ 117 (200)
T ss_pred --------------------------------------------------------------hccccCCHHHHHHHHHHH
Confidence 001247899999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..+.. .+.+.|.+..+.++++++.+|+.+.....+..++.++.
T Consensus 118 al~~------~p~illlDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~ 179 (200)
T cd03217 118 LLLL------EPDLAILDEPDSGLDIDALR-----------LVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLY 179 (200)
T ss_pred HHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEE
Confidence 9998 99999999998876655443 56666666555578999999998854321466666663
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-19 Score=178.85 Aligned_cols=201 Identities=14% Similarity=0.086 Sum_probs=136.8
Q ss_pred CCCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 76 DRDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
..+.|.++++++.|++ +.+|+++||+| +|+|+|||||||||++|+| .+.+|+|. ++|..+ ...
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---i~g~~i----~~~ 88 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDGIDI----SKL 88 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE---ECCEEh----hhC
Confidence 3467899999999986 57999999999 9999999999999999955 46789999 888732 222
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.++|++|+..+++ . |+++|+.+... . ....+..++..+++..
T Consensus 89 ~~~~~~~~i~~v~q~~~l~~-~------tv~~nl~~~~~---~----~~~~~~~~l~~~~l~~----------------- 137 (257)
T cd03288 89 PLHTLRSRLSIILQDPILFS-G------SIRFNLDPECK---C----TDDRLWEALEIAQLKN----------------- 137 (257)
T ss_pred CHHHHhhhEEEECCCCcccc-c------HHHHhcCcCCC---C----CHHHHHHHHHHhCcHH-----------------
Confidence 22233557999999987664 5 78888764310 0 0112233343333321
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc--ccccCCCCCCCCCCCCCCcc
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~--~~~~~~~~~~~~ls~g~~q~ 303 (541)
+++.+. ... ..+.....+|+|++|+
T Consensus 138 ----------------------------------------------------~~~~~~~~l~~-~~~~~~~~LS~G~~qr 164 (257)
T cd03288 138 ----------------------------------------------------MVKSLPGGLDA-VVTEGGENFSVGQRQL 164 (257)
T ss_pred ----------------------------------------------------HHhhcccccCc-EeccCCCcCCHHHHHH
Confidence 111110 000 1122355689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+++.+.. .+.++++.+|+.+.... ..++
T Consensus 165 l~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~~~-~~~tiii~sh~~~~~~~--~dri 224 (257)
T cd03288 165 FCLARAFVR------KSSILIMDEATASIDMATEN-----------ILQKVVMTAF-ADRTVVTIAHRVSTILD--ADLV 224 (257)
T ss_pred HHHHHHHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHhc-CCCEEEEEecChHHHHh--CCEE
Confidence 999999998 99999999998886654432 5556665543 36888999999886653 5666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 225 ~~l~ 228 (257)
T cd03288 225 LVLS 228 (257)
T ss_pred EEEE
Confidence 6553
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-19 Score=201.47 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=144.6
Q ss_pred Cceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+.+.++|+++.|+. +.+|+++||++ +|+|||||||||||++|++ .+..|+|. ++|+. +...
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~----i~~~ 75 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR---VAGQD----VATL 75 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEE----cCcC
Confidence 46899999999963 46999999999 9999999999999999954 56789999 88872 2221
Q ss_pred ccc----cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 146 KVR----GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 146 ~~~----~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
... .+++.++|++|+..+++++ |+.||+.+.....+....+..+++.++++.+|+.+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~l~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~------------- 136 (648)
T PRK10535 76 DADALAQLRREHFGFIFQRYHLLSHL------TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED------------- 136 (648)
T ss_pred CHHHHHHHHhccEEEEeCCcccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------------
Confidence 111 1245799999999999999 99999987522112222333445556666665532
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..+..+..+|+|++
T Consensus 137 ------------------------------------------------------------------~~~~~~~~LS~Gq~ 150 (648)
T PRK10535 137 ------------------------------------------------------------------RVEYQPSQLSGGQQ 150 (648)
T ss_pred ------------------------------------------------------------------hhcCCcccCCHHHH
Confidence 11233456899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +|+++|+|||..|.+..... .+.+++.+..+.++++++.+|+.++... +.
T Consensus 151 qrv~LAraL~~------~P~lLllDEP~~gLD~~s~~-----------~l~~ll~~l~~~g~tilivsH~~~~~~~--~d 211 (648)
T PRK10535 151 QRVSIARALMN------GGQVILADEPTGALDSHSGE-----------EVMAILHQLRDRGHTVIIVTHDPQVAAQ--AE 211 (648)
T ss_pred HHHHHHHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEECCCHHHHHh--CC
Confidence 99999999999 99999999998776655543 5666776665568899999999886642 44
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 212 ~i~~l 216 (648)
T PRK10535 212 RVIEI 216 (648)
T ss_pred EEEEE
Confidence 44433
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-19 Score=204.95 Aligned_cols=202 Identities=19% Similarity=0.224 Sum_probs=142.9
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++||+++|++ +++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|. ++.....
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~---idg~----~l~~~~~ 534 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL---LDGV----DIRQIDP 534 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----EhhhCCH
Confidence 46999999999964 56999999999 9999999999999999944 67789999 8887 3333334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+|. - |++||+.+++. .. ..+.+.++++.+|+...-. .+ +
T Consensus 535 ~~lr~~i~~v~Q~~~lf~-~------TI~eNi~~~~~--~~----~~~~i~~a~~~~~l~~~i~--------~l--p--- 588 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFY-G------TLRDNIALGAP--YA----DDEEILRAAELAGVTEFVR--------RH--P--- 588 (694)
T ss_pred HHHHhccEEECCChhhhh-h------hHHHHHhCCCC--CC----CHHHHHHHHHHcChHHHHH--------hC--c---
Confidence 455678999999999884 3 89999998731 11 1234555666666543111 00 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|++- .+|+. -..+|+||+|+++|+
T Consensus 589 -------------------------------~gl~T---~i~e~---------------------G~~LSgGQrQRlalA 613 (694)
T TIGR03375 589 -------------------------------DGLDM---QIGER---------------------GRSLSGGQRQAVALA 613 (694)
T ss_pred -------------------------------ccccc---eecCC---------------------CCCCCHHHHHHHHHH
Confidence 00000 01111 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+. +++++|+|||+.+-+..++. ++.+.|.+.. .++|+++.+|.++.. +...++.+++
T Consensus 614 Rall~------~p~iliLDE~Ts~LD~~te~-----------~i~~~l~~~~-~~~T~iiItHrl~~~--~~~D~iivl~ 673 (694)
T TIGR03375 614 RALLR------DPPILLLDEPTSAMDNRSEE-----------RFKDRLKRWL-AGKTLVLVTHRTSLL--DLVDRIIVMD 673 (694)
T ss_pred HHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHh-CCCEEEEEecCHHHH--HhCCEEEEEe
Confidence 99999 99999999998776555443 5555555443 378999999988654 3456666664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-19 Score=216.77 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=143.0
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHh--cCC-----------------------
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSD----------------------- 123 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~----------------------- 123 (541)
+.|+|+||+++|++ .++|+|+||+| ||+||||||||||+++|+ ..+
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 46999999999963 47999999999 999999999999999993 344
Q ss_pred -------------------------------CCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccC
Q psy91 124 -------------------------------LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLF 172 (541)
Q Consensus 124 -------------------------------~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~ 172 (541)
.+|+|+ ++|. ++.......+++.+|||+|++.||. .
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~---idG~----di~~~~~~~lR~~i~~V~Qep~LF~-g----- 1310 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKIL---LDGV----DICDYNLKDLRNLFSIVSQEPMLFN-M----- 1310 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEE---ECCE----EHHhCCHHHHHhhccEeCCCCcccc-c-----
Confidence 478888 8887 3333344556778999999999984 4
Q ss_pred CCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchh
Q psy91 173 QTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQV 252 (541)
Q Consensus 173 qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~ 252 (541)
|++||+.|++ + .. ..+.+..+++..++...-. .+ |+ ||.+
T Consensus 1311 -TIreNI~~g~-~-~a----t~eeI~~A~k~A~l~~fI~--------~L--P~------------------GydT----- 1350 (1466)
T PTZ00265 1311 -SIYENIKFGK-E-DA----TREDVKRACKFAAIDEFIE--------SL--PN------------------KYDT----- 1350 (1466)
T ss_pred -cHHHHHhcCC-C-CC----CHHHHHHHHHHcCCHHHHH--------hC--cc------------------ccCC-----
Confidence 8999999983 2 11 2234556666666543211 00 00 0000
Q ss_pred hhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 253 HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 253 ~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+|+.| ..+||||+||++|+|+++. +|+++|+|||+...
T Consensus 1351 --------------~VGe~G---------------------~~LSGGQkQRIaIARALlr------~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1351 --------------NVGPYG---------------------KSLSGGQKQRIAIARALLR------EPKILLLDEATSSL 1389 (1466)
T ss_pred --------------ccCCCC---------------------CcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccc
Confidence 122222 3589999999999999999 99999999997665
Q ss_pred Cccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEcC
Q psy91 333 SINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVDT 388 (541)
Q Consensus 333 ~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIpv 388 (541)
+..++. .+.+.|.+.. ..++|+++..|.+.. .+...++.+++-
T Consensus 1390 D~~sE~-----------~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1390 DSNSEK-----------LIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNN 1433 (1466)
T ss_pred CHHHHH-----------HHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeC
Confidence 544443 4445555443 357999999988643 345667777753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-19 Score=194.79 Aligned_cols=197 Identities=14% Similarity=0.200 Sum_probs=138.8
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++|+++ .+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|..+.. ......
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~---~~g~~i~~---~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT---LDGHEVVT---RSPQDG 324 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE---ECCEECCC---CCHHHH
Confidence 4689999985 3799999999 9999999999999999955 46789999 88873211 111112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceecccccc--c----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPE--Q----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~--~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.++.+|||+|+. .+++.+ |+.+|+.++.... . .......+.+..+++.+|+..
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------ 386 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGM------SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------------ 386 (501)
T ss_pred HHCCCEEecCccccCCCcCCC------cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------------
Confidence 344699999995 578888 9999998752110 0 111122233444455444421
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
...++.+..+|+|+
T Consensus 387 ------------------------------------------------------------------~~~~~~~~~LSgGe 400 (501)
T PRK10762 387 ------------------------------------------------------------------PSMEQAIGLLSGGN 400 (501)
T ss_pred ------------------------------------------------------------------CCccCchhhCCHHH
Confidence 12344566799999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+.+.++++.+|+++... .++
T Consensus 401 kqrv~lA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tviivtHd~~~~~-~~~ 462 (501)
T PRK10762 401 QQKVAIARGLMT------RPKVLILDEPTRGVDVGAKK-----------EIYQLINQFKAEGLSIILVSSEMPEVL-GMS 462 (501)
T ss_pred HHHHHHHHHHhh------CCCEEEEcCCCCCCCHhHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-hhC
Confidence 999999999998 99999999998887665553 666677766556889999999987543 356
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 463 d~v~~l~ 469 (501)
T PRK10762 463 DRILVMH 469 (501)
T ss_pred CEEEEEE
Confidence 6666663
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-19 Score=176.51 Aligned_cols=177 Identities=18% Similarity=0.181 Sum_probs=125.2
Q ss_pred eecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccc
Q psy91 95 KKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPS 166 (541)
Q Consensus 95 L~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~ 166 (541)
|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .... ...+|++|+..+++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~-----~~~~~v~q~~~l~~~ 68 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVI---LEGKQI----TEPG-----PDRMVVFQNYSLLPW 68 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEC----CCCC-----hhheEEecCcccCCC
Confidence 46888888 9999999999999999955 46789999 888722 1111 124899999999998
Q ss_pred cccccCCCcccceecccc--ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCee
Q psy91 167 LIGSLFQTDRDYIGFATL--PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIG 244 (541)
Q Consensus 167 lig~~~qtv~e~l~~~~~--~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG 244 (541)
+ |+.+|+.++.. .......+..+.+..+++.+|+.+
T Consensus 69 ~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------------------ 106 (230)
T TIGR01184 69 L------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE------------------------------------ 106 (230)
T ss_pred C------CHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHH------------------------------------
Confidence 8 99999887511 011222233334555566555532
Q ss_pred EeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEE
Q psy91 245 FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324 (541)
Q Consensus 245 ~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I 324 (541)
..+..+..+|+|++|++.|+++++. +++++|
T Consensus 107 -------------------------------------------~~~~~~~~LSgG~~qrv~la~al~~------~p~lll 137 (230)
T TIGR01184 107 -------------------------------------------AADKRPGQLSGGMKQRVAIARALSI------RPKVLL 137 (230)
T ss_pred -------------------------------------------HHcCChhhCCHHHHHHHHHHHHHHc------CCCEEE
Confidence 1122345689999999999999998 999999
Q ss_pred EcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 325 VDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 325 ~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+|||..|-+..+.. .+.+.|.+..+. ++++++.+|+++... .+..++.++
T Consensus 138 LDEPt~gLD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l 188 (230)
T TIGR01184 138 LDEPFGALDALTRG-----------NLQEELMQIWEEHRVTVLMVTHDVDEAL-LLSDRVVML 188 (230)
T ss_pred EcCCCcCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998887665553 667777766553 788999999877432 344555555
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-19 Score=198.70 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=139.5
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++|++++|++ +.+|+++||++ ||+||||||||||+++|++ .+.+|+|. ++|. ........
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~---~~g~----~~~~~~~~ 405 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL---IDGI----DINTVTRE 405 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE---ECCE----EhhhCCHH
Confidence 45999999999975 57999999999 9999999999999999944 57789999 8787 32222233
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|+..+++ . |++||+.++. +. .+. +.+..++..+|+... +.....|++.
T Consensus 406 ~~~~~i~~v~q~~~lf~-~------ti~~Ni~~~~-~~-~~~----~~~~~a~~~~~~~~~----i~~l~~g~~t----- 463 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFN-R------SIRENIRLGR-EG-ATD----EEVYEAAKAAAAHDF----ILKRSNGYDT----- 463 (585)
T ss_pred HHHhheEEEccCCccCc-c------cHHHHHhcCC-CC-CCH----HHHHHHHHHhCcHHH----HHhccccccc-----
Confidence 45567999999988874 5 8999999873 11 111 223334444444321 0000000000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
........+|+|++|++.|++
T Consensus 464 -----------------------------------------------------------~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 464 -----------------------------------------------------------LVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred -----------------------------------------------------------hhcCCCCCCCHHHHHHHHHHH
Confidence 001123468999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+..+.. .+.+.|.+. ..++++++.+|+.+... ...++.+++
T Consensus 485 all~------~p~ililDEpts~LD~~~~~-----------~i~~~l~~~-~~~~tvI~isH~~~~~~--~~d~i~~l~ 543 (585)
T TIGR01192 485 AILK------NAPILVLDEATSALDVETEA-----------RVKNAIDAL-RKNRTTFIIAHRLSTVR--NADLVLFLD 543 (585)
T ss_pred HHhc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHH-hCCCEEEEEEcChHHHH--cCCEEEEEE
Confidence 9999 99999999998886665553 555555544 34789999999876543 356666653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-19 Score=200.12 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=140.3
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcc
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVL 163 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l 163 (541)
+.+.+|+||++-+ ||||+|||||||||++|+++...|.|. |.+++.+.+... ..++|.+|||.|++.-
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~-----Gdi~i~G~p~~q-~tF~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIE-----GDILISGFPKDQ-ETFARVSGYVEQQDIH 875 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEE-----eEEEECCeeCch-hhhccccceeeccccc
Confidence 5578999999988 999999999999999999988766554 553333222221 3567789999999999
Q ss_pred ccccccccCCCcccceecc---ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCC
Q psy91 164 TPSLIGSLFQTDRDYIGFA---TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPY 240 (541)
Q Consensus 164 ~~~lig~~~qtv~e~l~~~---~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~ 240 (541)
.+.+ ||+|.+.|+ |++..++.++..+.++++++.++|..+++..++
T Consensus 876 ~~~~------TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG------------------------- 924 (1391)
T KOG0065|consen 876 SPEL------TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG------------------------- 924 (1391)
T ss_pred Cccc------chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-------------------------
Confidence 9999 999999998 777788888888999999999999876555433
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~ 320 (541)
..|. .+|..|+++++|+..++. +|
T Consensus 925 -----------------------------~~G~---------------------GLs~eQRKrLTIgVELvA------~P 948 (1391)
T KOG0065|consen 925 -----------------------------LPGS---------------------GLSTEQRKRLTIGVELVA------NP 948 (1391)
T ss_pred -----------------------------CCCC---------------------CCCHHHhceeeEEEEEec------CC
Confidence 2221 245568899999999988 89
Q ss_pred -eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 321 -RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 321 -~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
.|+++|||+.|.+... +| -+.++++.....|++++...|...+
T Consensus 949 ~~ilFLDEPTSGLDsqa--A~---------~i~~~lrkla~tGqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 949 SSILFLDEPTSGLDSQA--AA---------IVMRFLRKLADTGQTILCTIHQPSI 992 (1391)
T ss_pred ceeEEecCCCCCccHHH--HH---------HHHHHHHHHHhcCCeEEEEecCCcH
Confidence 8999999999865433 23 3556677777889998887776543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-19 Score=196.76 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=140.4
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++|++++|++ +.+|+++||++ +|+||||||||||+++|+| .+.+|+|. ++|.. +.....
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~---~~g~~----i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR---LDGAD----LKQWDR 387 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEe----hhhCCH
Confidence 46999999999964 57999999999 9999999999999999944 57789999 88873 222223
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+++ - |++||+.++. + ..+. +.+..+++..++...
T Consensus 388 ~~~~~~i~~v~q~~~lf~-~------ti~~Ni~~~~-~-~~~~----~~~~~~~~~~~~~~~------------------ 436 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFP-G------TVAENIARFG-E-NADP----EKIIEAAKLAGVHEL------------------ 436 (544)
T ss_pred HHHhhheEEecCCccccc-c------cHHHHHhccC-C-CCCH----HHHHHHHHHhChHHH------------------
Confidence 345568999999988874 4 8999998652 1 1111 223334444444321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc-cccCCCCCCCCCCCCCCcceEE
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~-~~~~~~~~~~~ls~g~~q~v~I 306 (541)
++.|-. -+.........+|+|++|+++|
T Consensus 437 ---------------------------------------------------i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 437 ---------------------------------------------------ILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred ---------------------------------------------------HHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 111100 0000111234689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+. +++++|+|||+.+-+..+.. ++.+.|.+....++++++.+|..+... ...++.++
T Consensus 466 ARall~------~~~ililDEpts~LD~~~~~-----------~i~~~l~~~~~~~~tvi~ith~~~~~~--~~d~i~~l 526 (544)
T TIGR01842 466 ARALYG------DPKLVVLDEPNSNLDEEGEQ-----------ALANAIKALKARGITVVVITHRPSLLG--CVDKILVL 526 (544)
T ss_pred HHHHhc------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHhhCCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 999999 99999999998776655543 666666665545789999999987543 45666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 527 ~ 527 (544)
T TIGR01842 527 Q 527 (544)
T ss_pred E
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-19 Score=195.74 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=138.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-C--CCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-D--LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~--~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + ..|+|+ ++|+.+. .....
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~---~~g~~~~---~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT---LFGRRRG---SGETI 331 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE---EecccCC---CCCCH
Confidence 35799999999999888999999999 99999999999999999664 2 379999 8887321 11111
Q ss_pred ccccccEEEEeCCCccccc--cccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 148 RGRQYPWGVVEGSTVLTPS--LIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~--lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
...++.++|++|+..+++. . ++.+++.++.... ........+.+..+++.+|+.+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 392 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVST------SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK------------- 392 (490)
T ss_pred HHHHhhceEECHHHHhhcccCC------cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-------------
Confidence 1234578999998655432 3 4554443321100 0001111223444455444421
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
.+.++.+..+|+|++
T Consensus 393 -----------------------------------------------------------------~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 393 -----------------------------------------------------------------RTADAPFHSLSWGQQ 407 (490)
T ss_pred -----------------------------------------------------------------hhccCchhhCCHHHH
Confidence 022345667999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCc-ceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGK-TTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~r-t~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+.+. ++++.+|+.+.....++
T Consensus 408 qrv~la~al~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~ 470 (490)
T PRK10938 408 RLALIVRALVK------HPTLLILDEPLQGLDPLNRQ-----------LVRRFVDVLISEGETQLLFVSHHAEDAPACIT 470 (490)
T ss_pred HHHHHHHHHhc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHhcCCcEEEEEecchhhhhhhhh
Confidence 99999999998 99999999998887765553 67777777765554 58899999876654455
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 471 d~v~~l 476 (490)
T PRK10938 471 HRLEFV 476 (490)
T ss_pred eeEEEe
Confidence 666665
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-19 Score=198.08 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=143.9
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++|++++|++ +.+|+|+||++ ||+||||||||||+++|++ .+.+|+|. ++|. .+.....
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~---i~g~----~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL---LNGQ----PIADYSE 409 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----EhhhCCH
Confidence 46999999999964 46999999999 9999999999999999944 57889999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.++||+|+..+|+ - |++||+.++. + ....+.+..+++.+|+.+.-.+ +
T Consensus 410 ~~~r~~i~~v~Q~~~lf~-~------ti~~Ni~~~~-~-----~~~~~~i~~al~~~~l~~~i~~-----------p--- 462 (574)
T PRK11160 410 AALRQAISVVSQRVHLFS-A------TLRDNLLLAA-P-----NASDEALIEVLQQVGLEKLLED-----------D--- 462 (574)
T ss_pred HHHHhheeEEcccchhhc-c------cHHHHhhcCC-C-----ccCHHHHHHHHHHcCCHHHHcC-----------c---
Confidence 455678999999998884 4 8999999873 1 1123456667777777542111 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|.+- .+|+ ....+|+|++|+++|+
T Consensus 463 -------------------------------~GldT---~vge---------------------~g~~LSgGqrqRialA 487 (574)
T PRK11160 463 -------------------------------KGLNA---WLGE---------------------GGRQLSGGEQRRLGIA 487 (574)
T ss_pred -------------------------------cccCc---hhcC---------------------CCCCCCHHHHHHHHHH
Confidence 00000 0111 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..++. ++.+.|.+.. .++|+++.+|...... ...++.+++
T Consensus 488 Rall~------~~~ililDE~ts~lD~~t~~-----------~i~~~l~~~~-~~~tviiitHr~~~~~--~~d~i~~l~ 547 (574)
T PRK11160 488 RALLH------DAPLLLLDEPTEGLDAETER-----------QILELLAEHA-QNKTVLMITHRLTGLE--QFDRICVMD 547 (574)
T ss_pred HHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecChhHHH--hCCEEEEEe
Confidence 99999 99999999998776655543 5555665553 4789999998876443 345555553
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-19 Score=192.91 Aligned_cols=197 Identities=13% Similarity=0.178 Sum_probs=139.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.+++++.. .+|+++||+| ||+|||||||||||++|+| .+.+|+|+ ++|+.+.. ......
T Consensus 256 ~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~---~~g~~~~~---~~~~~~ 325 (501)
T PRK11288 256 VRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY---LDGKPIDI---RSPRDA 325 (501)
T ss_pred cEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE---ECCEECCC---CCHHHH
Confidence 35888898743 5899999999 9999999999999999955 46789999 88873211 111112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceeccccccc------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPEQ------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~~------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.+..++|++|+. .+++.+ |+.+|+.++..... .......+.+..+++.+|+.
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------- 386 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVH------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------------- 386 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCC------CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc-------------
Confidence 345789999985 488888 99999887521110 01111112333344444431
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
....++.+..+|+|+
T Consensus 387 -----------------------------------------------------------------~~~~~~~~~~LSgGq 401 (501)
T PRK11288 387 -----------------------------------------------------------------TPSREQLIMNLSGGN 401 (501)
T ss_pred -----------------------------------------------------------------cCCccCccccCCHHH
Confidence 112345677899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++|+|+|||..|.+..+.. ++.+++.+..+.+.++++.+|+++... .++
T Consensus 402 ~qrl~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tviivsHd~~~~~-~~~ 463 (501)
T PRK11288 402 QQKAILGRWLSE------DMKVILLDEPTRGIDVGAKH-----------EIYNVIYELAAQGVAVLFVSSDLPEVL-GVA 463 (501)
T ss_pred HHHHHHHHHHcc------CCCEEEEcCCCCCCCHhHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-hhC
Confidence 999999999998 99999999998887766654 677777777667889999999987654 355
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 464 d~i~~l 469 (501)
T PRK11288 464 DRIVVM 469 (501)
T ss_pred CEEEEE
Confidence 666655
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-19 Score=194.77 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=133.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|++++|+++++|+++||+| +|+|||||||||||++|+| .++.|+|. ++|.
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~---~~~~--------------- 63 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVS---LDPN--------------- 63 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC---------------
Confidence 68899999999889999999999 9999999999999999966 45677777 5542
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCcc---chhhhhhhccccccCCCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLG---KSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~---ks~l~~~l~gl~~~~~~~ 228 (541)
..+||++|+..+++.+ ||.+++.++.... . ........+ .+..... ..++...........
T Consensus 64 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~--~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--- 127 (530)
T PRK15064 64 ERLGKLRQDQFAFEEF------TVLDTVIMGHTEL--W--EVKQERDRI---YALPEMSEEDGMKVADLEVKFAEMD--- 127 (530)
T ss_pred CEEEEEeccCCcCCCC------cHHHHHHHhhHHH--H--HHHHHHHHH---hcccccccchHHHHHHHHHHHHhcC---
Confidence 2489999999888888 9999998762100 0 000000000 0000000 000000000000000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++ .. ... -..++..+.......+..+..+|+|++|++.|++
T Consensus 128 ---------------~~-----~~-~~~------------------~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~ 168 (530)
T PRK15064 128 ---------------GY-----TA-EAR------------------AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQ 168 (530)
T ss_pred ---------------ch-----hH-HHH------------------HHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHH
Confidence 00 00 000 0123444433322234457789999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.|.+..+.. .+.++|.+ .+.++++.+|+.+... .+..++.++.
T Consensus 169 aL~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~---~~~tiiivsHd~~~~~-~~~d~i~~l~ 226 (530)
T PRK15064 169 ALFS------NPDILLLDEPTNNLDINTIR-----------WLEDVLNE---RNSTMIIISHDRHFLN-SVCTHMADLD 226 (530)
T ss_pred HHhc------CCCEEEEcCCCcccCHHHHH-----------HHHHHHHh---CCCeEEEEeCCHHHHH-hhcceEEEEe
Confidence 9998 99999999998876655543 44444442 3678999999988543 3555665554
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-19 Score=194.96 Aligned_cols=215 Identities=16% Similarity=0.171 Sum_probs=133.7
Q ss_pred CCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.|+++||++.|+ ++.+|++|||+| +|+|||||||||||++|+|. ++.|+|. +++.
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~---~~~~----------- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR---PAPG----------- 69 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC-----------
Confidence 34789999999998 788999999999 99999999999999999664 5667776 4321
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCc-cc------hhhhhhhcc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGL-GK------STLVNSLFL 220 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~-~k------s~l~~~l~g 220 (541)
..+|||+|++.+++.+ ||.+|+.++.... ... ...........+...- .. ..+...+..
T Consensus 70 ----~~i~~v~Q~~~~~~~~------tv~e~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (556)
T PRK11819 70 ----IKVGYLPQEPQLDPEK------TVRENVEEGVAEV--KAA--LDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135 (556)
T ss_pred ----CEEEEEecCCCCCCCC------cHHHHHHHhhHHH--HHH--HHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 3589999999999999 9999998762100 000 0000000000000000 00 000000000
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
...+ . ..+ --..++..+.+. ..++.+..+|+|+
T Consensus 136 ~~~~---~----------------------------~~~--------------~~~~~l~~~gl~--~~~~~~~~LSgGq 168 (556)
T PRK11819 136 ADAW---D----------------------------LDS--------------QLEIAMDALRCP--PWDAKVTKLSGGE 168 (556)
T ss_pred cCcc---c----------------------------hHH--------------HHHHHHHhCCCC--cccCchhhcCHHH
Confidence 0000 0 000 001233333332 1355677899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||+.|.+..... .+.++|.+. ..++++.+|+.+... .++
T Consensus 169 kqrv~la~al~~------~p~vlLLDEPt~~LD~~~~~-----------~l~~~L~~~---~~tviiisHd~~~~~-~~~ 227 (556)
T PRK11819 169 RRRVALCRLLLE------KPDMLLLDEPTNHLDAESVA-----------WLEQFLHDY---PGTVVAVTHDRYFLD-NVA 227 (556)
T ss_pred HHHHHHHHHHhC------CCCEEEEcCCCCcCChHHHH-----------HHHHHHHhC---CCeEEEEeCCHHHHH-hhc
Confidence 999999999998 99999999998877665553 444455443 248889999887544 345
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 228 d~i~~l~ 234 (556)
T PRK11819 228 GWILELD 234 (556)
T ss_pred CeEEEEe
Confidence 5665554
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-19 Score=170.18 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=130.2
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+++++++|+. +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE---IDGIDI----STIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE---ECCEEh----HHCCH
Confidence 46899999999975 47999999999 9999999999999999955 56789999 888732 21122
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++|++|+..+++ . |+.+|+.+.. ..... .+..++.
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~------tv~~~l~~~~---~~~~~----~~~~~l~------------------------- 118 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-G------TIRSNLDPFD---EYSDE----EIYGALR------------------------- 118 (207)
T ss_pred HHHHhhEEEEecCCcccC-c------cHHHHhcccC---CCCHH----HHHHHhh-------------------------
Confidence 223457999999987664 6 8988886531 01000 0000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+..+..+|+|++|++.|+
T Consensus 119 -------------------------------------------------------------~~~~~~~LS~G~~qrv~la 137 (207)
T cd03369 119 -------------------------------------------------------------VSEGGLNLSQGQRQLLCLA 137 (207)
T ss_pred -------------------------------------------------------------ccCCCCcCCHHHHHHHHHH
Confidence 0123456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.++|.+.. .++++++.+|+.+.... ..++.++
T Consensus 138 ral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~-~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 138 RALLK------RPRVLVLDEATASIDYATDA-----------LIQKTIREEF-TNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred HHHhh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 99998 99999999998876654432 5666666653 37889999999886543 4566555
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-19 Score=197.83 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=142.7
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
..|.++||+++|.+ +++|+++||++ +|+|+||||||||+++|+| .+..|+|+ ++|. .+.....
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~---i~g~----~i~~~~~ 401 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL---LDGH----DLADYTL 401 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE---ECCE----eHHhcCH
Confidence 46999999999964 56999999999 9999999999999999955 57789999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.++. - |++||+.++.. .. ...+.+.+++..+|+...-... =.|++.
T Consensus 402 ~~~~~~i~~v~Q~~~lf~-~------Ti~~Ni~~~~~-~~----~~~~~i~~~l~~~~l~~~i~~l----p~gldt---- 461 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFN-D------TIANNIAYGRT-EQ----ADRAEIERALAAAYAQDFVDKL----PLGLDT---- 461 (571)
T ss_pred HHHHhhceEEccCccccc-c------cHHHHHhcCCC-CC----CCHHHHHHHHHHcChHHHHHhC----cCcccc----
Confidence 455678999999998883 2 89999998731 11 1233466667777765421100 000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+ .-..+|+||+|+++|+
T Consensus 462 ---------------------------------------~i~~---------------------~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 462 ---------------------------------------PIGE---------------------NGVLLSGGQRQRLAIA 481 (571)
T ss_pred ---------------------------------------eecC---------------------CCCcCCHHHHHHHHHH
Confidence 0011 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+.+. +++++|+|||+.+-+..+.. .+.+.|.+. ..++++++.+|+..... .+.++.+++
T Consensus 482 Rall~------~~~illLDEpts~LD~~~~~-----------~i~~~L~~~-~~~~tiIiitH~~~~~~--~~D~ii~l~ 541 (571)
T TIGR02203 482 RALLK------DAPILILDEATSALDNESER-----------LVQAALERL-MQGRTTLVIAHRLSTIE--KADRIVVMD 541 (571)
T ss_pred HHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHH-hCCCEEEEEehhhHHHH--hCCEEEEEe
Confidence 99999 99999999997776555543 556666554 34689999999876543 455555553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-19 Score=197.64 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=141.3
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.|.++||+++|++ +.+|+|+||++ ||+||||||||||+++|+| .+..|+|. ++|. .+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~---i~g~----~i~~~~ 408 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL---LDGV----DLRQLD 408 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE---ECCE----EHHhcC
Confidence 46999999999964 56999999999 9999999999999999954 56789999 8887 332222
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.++|++|++.+++. |++||+.++. +. .+ .+.+..+++.+|+...-++ + +
T Consensus 409 ~~~~~~~i~~~~Q~~~lf~~-------Ti~~Ni~~~~-~~-~~----~~~~~~~l~~~~l~~~i~~--------l--~-- 463 (576)
T TIGR02204 409 PAELRARMALVPQDPVLFAA-------SVMENIRYGR-PD-AT----DEEVEAAARAAHAHEFISA--------L--P-- 463 (576)
T ss_pred HHHHHHhceEEccCCccccc-------cHHHHHhcCC-CC-CC----HHHHHHHHHHcCcHHHHHh--------C--C--
Confidence 33455679999999988742 8999999873 11 11 2345566777776431111 0 0
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+|.+- .+|+ ....+|+|++|++++
T Consensus 464 --------------------------------~gl~t---~i~~---------------------~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 464 --------------------------------EGYDT---YLGE---------------------RGVTLSGGQRQRIAI 487 (576)
T ss_pred --------------------------------CCCCc---eeCC---------------------CCCcCCHHHHHHHHH
Confidence 00000 0011 123589999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+. +++++|+|||+.+-+..+.. .+.+.|.+.. .++++++.+|..+.. ....++.++
T Consensus 488 aRal~~------~~~ililDEpts~lD~~~~~-----------~i~~~l~~~~-~~~t~IiitH~~~~~--~~~d~vi~l 547 (576)
T TIGR02204 488 ARAILK------DAPILLLDEATSALDAESEQ-----------LVQQALETLM-KGRTTLIIAHRLATV--LKADRIVVM 547 (576)
T ss_pred HHHHHh------CCCeEEEeCcccccCHHHHH-----------HHHHHHHHHh-CCCEEEEEecchHHH--HhCCEEEEE
Confidence 999998 99999999998876655543 5555665553 478999999987543 345566555
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 548 ~ 548 (576)
T TIGR02204 548 D 548 (576)
T ss_pred E
Confidence 3
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-19 Score=195.90 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=139.6
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.+++++++|+. +.+|+++|+++ +|+||||||||||+++|++ .|.+|+|. ++|. .......
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~---~~g~----~~~~~~~ 384 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR---FHDI----PLTKLQL 384 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE---ECCE----EHhhCCH
Confidence 46899999999964 56999999999 9999999999999999944 67889999 8887 3322233
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+++ - |++||+.++... .+ .+.+..++..+|+... +..+ +
T Consensus 385 ~~~~~~i~~v~q~~~lf~-~------ti~~Ni~~~~~~--~~----~~~~~~~~~~~~l~~~--------i~~l--p--- 438 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFS-D------TVANNIALGRPD--AT----QQEIEHVARLASVHDD--------ILRL--P--- 438 (569)
T ss_pred HHHHhheEEEccCCeecc-c------cHHHHHhcCCCC--CC----HHHHHHHHHHcCCHHH--------HHhC--c---
Confidence 345668999999988874 4 899999987311 11 2234445555555321 0000 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|+ ++ ........+|+|++|++.|+
T Consensus 439 -------------------------------~gl------------------~t------~~~~~g~~LSgGq~qRi~lA 463 (569)
T PRK10789 439 -------------------------------QGY------------------DT------EVGERGVMLSGGQKQRISIA 463 (569)
T ss_pred -------------------------------Ccc------------------cc------eecCCCCcCCHHHHHHHHHH
Confidence 000 00 00112345899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+. +++++|+|||+.+-+..+.. ++.+.|.+.. .++|+++.+|..+... ...++.+++
T Consensus 464 Rall~------~~~illlDEpts~LD~~~~~-----------~i~~~l~~~~-~~~tii~itH~~~~~~--~~d~i~~l~ 523 (569)
T PRK10789 464 RALLL------NAEILILDDALSAVDGRTEH-----------QILHNLRQWG-EGRTVIISAHRLSALT--EASEILVMQ 523 (569)
T ss_pred HHHhc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHh-CCCEEEEEecchhHHH--cCCEEEEEe
Confidence 99999 99999999998876655543 5555555543 4789999999876543 345555553
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-19 Score=184.63 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=125.2
Q ss_pred EEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 104 VVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 104 IiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
|+|||||||||||++|+| .+.+|+|. ++|+.+ .... ..++.++|++|+..+++++ ||.+|+.|
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~---i~g~~i----~~~~--~~~~~i~~v~q~~~l~~~~------tv~enl~~ 65 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM---LDGEDV----TNVP--PHLRHINMVFQSYALFPHM------TVEENVAF 65 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--HHHCCEEEEecCccccCCC------cHHHHHHH
Confidence 689999999999999955 56789999 888732 2111 1245799999999999999 99999998
Q ss_pred cccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhcc
Q psy91 182 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGF 261 (541)
Q Consensus 182 ~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~ 261 (541)
+....+....+..+++..+++.+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------------------------------------- 92 (325)
T TIGR01187 66 GLKMRKVPRAEIKPRVLEALRLVQLEE----------------------------------------------------- 92 (325)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCcc-----------------------------------------------------
Confidence 721112223333445666777766643
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhh
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWR 341 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~ 341 (541)
+.++.+..+|+|++|+++|+++++. +++++|+|||..|-+.....
T Consensus 93 --------------------------~~~~~~~~LSgGq~qRvalaraL~~------~p~lllLDEP~s~LD~~~~~--- 137 (325)
T TIGR01187 93 --------------------------FADRKPHQLSGGQQQRVALARALVF------KPKILLLDEPLSALDKKLRD--- 137 (325)
T ss_pred --------------------------hhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCccCCHHHHH---
Confidence 1223455689999999999999998 99999999998876654443
Q ss_pred hhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 342 ACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 342 ~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.++|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 138 --------~l~~~l~~l~~~~g~tiiivTHd~~e~-~~~~d~i~vl~ 175 (325)
T TIGR01187 138 --------QMQLELKTIQEQLGITFVFVTHDQEEA-MTMSDRIAIMR 175 (325)
T ss_pred --------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 667777766554 78999999987633 34666766664
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-19 Score=186.57 Aligned_cols=192 Identities=21% Similarity=0.230 Sum_probs=140.1
Q ss_pred ceeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.++++||+++|.+.. +|+|+||++ ||+|+||||||||+.+|. -.+.+|+|. ++|. .+...+..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~---~~g~----~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT---LNGV----EIASLDEQ 408 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee---ECCc----ChhhCChh
Confidence 579999999998765 999999999 999999999999999994 467889999 8887 33333333
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++++.|...+|. + |+++|+.++.-. ...+.+.++++.+||.++..+.. .|+..+
T Consensus 409 ~~~e~i~vl~Qr~hlF~---~----Tlr~NL~lA~~~------AsDEel~~aL~qvgL~~l~~~~p----~gl~t~---- 467 (573)
T COG4987 409 ALRETISVLTQRVHLFS---G----TLRDNLRLANPD------ASDEELWAALQQVGLEKLLESAP----DGLNTW---- 467 (573)
T ss_pred hHHHHHhhhccchHHHH---H----HHHHHHhhcCCC------CCHHHHHHHHHHcCHHHHHHhCh----hhhhch----
Confidence 35567899999998883 3 799999998321 22345667788888876321110 011110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+| ..-..+|||++||+.|++
T Consensus 468 ---------------------------------------lg---------------------e~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 468 ---------------------------------------LG---------------------EGGRRLSGGERRRLALAR 487 (573)
T ss_pred ---------------------------------------hc---------------------cCCCcCCchHHHHHHHHH
Confidence 01 112358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
.+.. +..++|+|||+-|.+.-.+. ++.+.+.+..+ ++|+++.+|.+.-.+
T Consensus 488 ~LL~------dapl~lLDEPTegLD~~TE~-----------~vL~ll~~~~~-~kTll~vTHrL~~le 537 (573)
T COG4987 488 ALLH------DAPLWLLDEPTEGLDPITER-----------QVLALLFEHAE-GKTLLMVTHRLRGLE 537 (573)
T ss_pred HHHc------CCCeEEecCCcccCChhhHH-----------HHHHHHHHHhc-CCeEEEEecccccHh
Confidence 9998 99999999998886655443 56665554433 889999998865443
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-19 Score=200.58 Aligned_cols=202 Identities=21% Similarity=0.233 Sum_probs=142.4
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +.+|+++||+| ||+||||||||||+++|++ .+.+|+|+ ++|. .+.....
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~---idg~----~i~~~~~ 526 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL---VDGV----DLAIADP 526 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----ehhhCCH
Confidence 46999999999963 56999999999 9999999999999999954 57889999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|+..+++ - |++||+.++. + .. ..+.+.++++.+|+... +..+ +
T Consensus 527 ~~~r~~i~~v~q~~~lf~-~------ti~eNi~~~~-~-~~----~~~~i~~a~~~~~l~~~--------i~~l--p--- 580 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFS-R------SIRDNIALCN-P-GA----PFEHVIHAAKLAGAHDF--------ISEL--P--- 580 (694)
T ss_pred HHHHHhCeEEccCCeehh-h------hHHHHHhcCC-C-CC----CHHHHHHHHHHcChHHH--------HHhC--c---
Confidence 345668999999988884 3 8999999862 1 11 12344455666665431 1000 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|+ ++. . ......+|+||+|++.|+
T Consensus 581 -------------------------------~gl------------------~t~-----i-~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 581 -------------------------------QGY------------------NTE-----V-GEKGANLSGGQRQRIAIA 605 (694)
T ss_pred -------------------------------Ccc------------------CcE-----e-cCCCCCCCHHHHHHHHHH
Confidence 000 000 0 111345899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..++. ++.+.|.+. ..++|+++.+|..+... ...++.+++
T Consensus 606 Rall~------~~~ililDEpts~LD~~~~~-----------~i~~~l~~~-~~~~t~i~itH~~~~~~--~~d~ii~l~ 665 (694)
T TIGR01846 606 RALVG------NPRILIFDEATSALDYESEA-----------LIMRNMREI-CRGRTVIIIAHRLSTVR--ACDRIIVLE 665 (694)
T ss_pred HHHHh------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHH-hCCCEEEEEeCChHHHH--hCCEEEEEe
Confidence 99999 99999999998876655553 566666554 35789999999876543 356666654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-19 Score=179.04 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=131.4
Q ss_pred CCCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 76 DRDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
..+.|+|+||++.|. ++++|+||||++ |++||||+||||++|+| .-...+|.|. ++|+++ ....
T Consensus 534 ~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~---iDgqdI----rnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT---IDGQDI----RNVT 606 (790)
T ss_pred cCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE---EcCchH----HHHH
Confidence 446899999999996 578999999999 99999999999999999 5667889999 889843 2223
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....+..+|.|+||..||.. |+..|+.|++... +.++..+.+..+ ++ ...+.++ |+
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-------TI~yNIryak~~A--sneevyaAAkAA----~I--------HdrIl~f--Pe- 662 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-------TILYNIRYAKPSA--SNEEVYAAAKAA----QI--------HDRILQF--PE- 662 (790)
T ss_pred HHHHHHhcCcccCcceeecc-------eeeeheeecCCCC--ChHHHHHHHHHh----hH--------HHHHhcC--ch-
Confidence 33456789999999999865 6889999995432 233333322111 10 1111111 00
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
||.+ -||+.|+ .+|||++|||+|
T Consensus 663 -----------------gY~t-------------------~VGERGL---------------------kLSGGEKQRVAi 685 (790)
T KOG0056|consen 663 -----------------GYNT-------------------RVGERGL---------------------KLSGGEKQRVAI 685 (790)
T ss_pred -----------------hhhh-------------------hhhhccc---------------------ccCCcchhhHHH
Confidence 0000 1355552 479999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccc
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSM 372 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~ 372 (541)
+++... .|.++++||.+...+.+++. ++..-|... -.+||.++..|.+
T Consensus 686 ARtiLK------~P~iIlLDEATSALDT~tER-----------~IQaaL~rl-ca~RTtIVvAHRL 733 (790)
T KOG0056|consen 686 ARTILK------APSIILLDEATSALDTNTER-----------AIQAALARL-CANRTTIVVAHRL 733 (790)
T ss_pred HHHHhc------CCcEEEEcchhhhcCCccHH-----------HHHHHHHHH-hcCCceEEEeeee
Confidence 999988 99999999997777777664 222223322 2467777666554
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-19 Score=173.86 Aligned_cols=185 Identities=13% Similarity=0.091 Sum_probs=127.2
Q ss_pred eeecceEEE------EEEcCCCCCHHHHHHHHhcC--C----CCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 94 VKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D----LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 94 iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~----~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
+|+++||+| +|+|||||||||||++|+|. + .+|+|+ ++|..+ ... ..+++.++|++|+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~---~~g~~~----~~~--~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL---LDGRPL----LPL--SIRGRHIATIMQNP 71 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEE---ECCEec----hhh--hhhhheeEEEecCc
Confidence 478999998 99999999999999999553 4 689999 888732 111 12235799999997
Q ss_pred c--cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCC
Q psy91 162 V--LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIP 239 (541)
Q Consensus 162 ~--l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~ 239 (541)
. +.+.+ |+.+++.+.............+.+..+++.+|+.+.
T Consensus 72 ~~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------------------ 115 (230)
T TIGR02770 72 RTAFNPLF------TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP------------------------------ 115 (230)
T ss_pred hhhcCccc------CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch------------------------------
Confidence 4 45667 888887654111111112233456666777666420
Q ss_pred CCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee
Q psy91 240 YSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319 (541)
Q Consensus 240 ~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~ 319 (541)
.+ +.+..+..+|+|++|++.|+++++. +
T Consensus 116 ------------------------------------~~----------~~~~~~~~LS~G~~qrv~laral~~------~ 143 (230)
T TIGR02770 116 ------------------------------------EE----------VLKKYPFQLSGGMLQRVMIALALLL------E 143 (230)
T ss_pred ------------------------------------HH----------HHhCChhhcCHHHHHHHHHHHHHhc------C
Confidence 00 1122345689999999999999998 9
Q ss_pred eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 320 ~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++|+|||..|-+..... .+.++|.+..+ .++++++.+|+.+.. ..+..++.++.
T Consensus 144 p~vllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~l~ 200 (230)
T TIGR02770 144 PPFLIADEPTTDLDVVNQA-----------RVLKLLRELRQLFGTGILLITHDLGVV-ARIADEVAVMD 200 (230)
T ss_pred CCEEEEcCCccccCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 9999999998886655443 56677776655 378899999987743 23556666663
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-19 Score=200.29 Aligned_cols=193 Identities=21% Similarity=0.286 Sum_probs=136.1
Q ss_pred CCCCceeeecccccccccc---eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRKS---VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~---iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+++||+|.|+.++ ||+|+|++| ||||||||||||.+.+| ...|+.|.|. ++|. ++.
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~---IDg~----dik 1055 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK---IDGV----DIK 1055 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE---ECCc----ccc
Confidence 4456799999999998765 999999999 99999999999999999 7889999999 8888 555
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..|+++|.|.|++.||.. |++||+.|| ... .+..+ +.++++..+..+ -+.++
T Consensus 1056 ~lnl~~LR~~i~lVsQEP~LF~~-------TIrENI~YG-~~~-vs~~e----Ii~Aak~ANaH~--------FI~sL-- 1112 (1228)
T KOG0055|consen 1056 DLNLKWLRKQIGLVSQEPVLFNG-------TIRENIAYG-SEE-VSEEE----IIEAAKLANAHN--------FISSL-- 1112 (1228)
T ss_pred cCCHHHHHHhcceeccCchhhcc-------cHHHHHhcc-CCC-CCHHH----HHHHHHHhhhHH--------HHhcC--
Confidence 55667778899999999999953 899999999 222 33333 333333333222 11111
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
|. ||.+ .+|+.| .++||||+||
T Consensus 1113 P~------------------GyDT-------------------~vGerG---------------------~QLSGGQKQR 1134 (1228)
T KOG0055|consen 1113 PQ------------------GYDT-------------------RVGERG---------------------VQLSGGQKQR 1134 (1228)
T ss_pred cC------------------cccC-------------------ccCccc---------------------CcCCchHHHH
Confidence 10 0100 123333 3689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
++|+|+.+. +|+++++||.+.-.+...+. ..+---+....+||+++..|.+.
T Consensus 1135 IAIARAilR------nPkILLLDEATSALDseSEr------------vVQeALd~a~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1135 IAIARAILR------NPKILLLDEATSALDSESER------------VVQEALDRAMEGRTTIVIAHRLS 1186 (1228)
T ss_pred HHHHHHHHc------CCCeeeeeccchhhhhhhHH------------HHHHHHHHhhcCCcEEEEecchh
Confidence 999999999 99999999996544433332 11111122356788888877644
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-18 Score=162.30 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=114.2
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|.++++++.|+ ++.+|+++||+| +|+||||||||||+++|++. +.+|+|. ++|.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~~~-------------- 63 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG---MPEG-------------- 63 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCC--------------
Confidence 46789999996 467999999999 99999999999999999554 5567776 5432
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+..++ .. |+.||+.++
T Consensus 64 -~~i~~~~q~~~~~-~~------tv~~nl~~~------------------------------------------------ 87 (166)
T cd03223 64 -EDLLFLPQRPYLP-LG------TLREQLIYP------------------------------------------------ 87 (166)
T ss_pred -ceEEEECCCCccc-cc------cHHHHhhcc------------------------------------------------
Confidence 4689999987653 45 788776542
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+..+|+|++|++.|++++
T Consensus 88 -------------------------------------------------------------~~~~LS~G~~~rv~laral 106 (166)
T cd03223 88 -------------------------------------------------------------WDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred -------------------------------------------------------------CCCCCCHHHHHHHHHHHHH
Confidence 0134789999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..... .+.+.+.+. ++++++.+|+.++. ....++.++
T Consensus 107 ~~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~---~~tiiivsh~~~~~--~~~d~i~~l 160 (166)
T cd03223 107 LH------KPKFVFLDEATSALDEESED-----------RLYQLLKEL---GITVISVGHRPSLW--KFHDRVLDL 160 (166)
T ss_pred Hc------CCCEEEEECCccccCHHHHH-----------HHHHHHHHh---CCEEEEEeCChhHH--hhCCEEEEE
Confidence 98 99999999998887665543 344444433 47889999997653 355666554
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=188.40 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=136.4
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV- 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~- 147 (541)
.+.+.++|+++ .+|++|||+| ||+|||||||||||++|+| .+..|+|. ++|..+ .....
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~i----~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM---LNGKEI----NALSTA 333 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE---ECCEEC----CCCCHH
Confidence 34689999984 2699999999 9999999999999999955 46789999 888732 11111
Q ss_pred ccccccEEEEeCCC---ccccccccccCCCcccceeccc---cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 148 RGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFAT---LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
...+..++||+|+. .+++.+ |+.+|+.+.. ...........+.+..+++.+|+..
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 394 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDA------PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------------- 394 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCC------cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-------------
Confidence 11234689999984 577878 8888875321 0000001111223444455444420
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
. ..++.+..+|+|++
T Consensus 395 ----------------------------------------------------------------~-~~~~~~~~LSgG~k 409 (510)
T PRK15439 395 ----------------------------------------------------------------N-HAEQAARTLSGGNQ 409 (510)
T ss_pred ----------------------------------------------------------------C-CccCccccCCcHHH
Confidence 1 23445678999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++|+|+|||+.|-+..+.. .+.+.|.+..+.+.++++.+|+++... .++.
T Consensus 410 qrl~la~al~~------~p~lLlLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~tiIivsHd~~~i~-~~~d 471 (510)
T PRK15439 410 QKVLIAKCLEA------SPQLLIVDEPTRGVDVSARN-----------DIYQLIRSIAAQNVAVLFISSDLEEIE-QMAD 471 (510)
T ss_pred HHHHHHHHHhh------CCCEEEECCCCcCcChhHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCC
Confidence 99999999998 99999999998887766554 666777766556789999999988654 3556
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 472 ~i~~l 476 (510)
T PRK15439 472 RVLVM 476 (510)
T ss_pred EEEEE
Confidence 66665
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-18 Score=187.34 Aligned_cols=199 Identities=12% Similarity=0.133 Sum_probs=135.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++|+++.+ +.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~---~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT---LHGKKINN---HNANEA 320 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE---ECCEECCC---CCHHHH
Confidence 468999999984 46999999999 9999999999999999955 46789999 88863211 111112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceeccccc-----cc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLP-----EQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~-----~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.++.++|++|+. .+++.+ ++.+|+.+..+. .+ .......+.+..+++.+|+
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------------- 380 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYL------DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRV-------------- 380 (491)
T ss_pred HHCCCEEcCCchhhCCcccCC------cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCc--------------
Confidence 244689999984 467766 776654332100 00 0011111122222222222
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
.....++.+..+|+|+
T Consensus 381 ----------------------------------------------------------------~~~~~~~~~~~LSgGq 396 (491)
T PRK10982 381 ----------------------------------------------------------------KTPGHRTQIGSLSGGN 396 (491)
T ss_pred ----------------------------------------------------------------cCCCcccccccCCcHH
Confidence 1112355677899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||+.|-+..... ++.+++.+..+.+.++++.+|+++... +++
T Consensus 397 ~qrv~la~al~~------~p~illLDEPt~gLD~~~~~-----------~~~~~l~~l~~~~~tvi~vsHd~~~~~-~~~ 458 (491)
T PRK10982 397 QQKVIIGRWLLT------QPEILMLDEPTRGIDVGAKF-----------EIYQLIAELAKKDKGIIIISSEMPELL-GIT 458 (491)
T ss_pred HHHHHHHHHHhc------CCCEEEEcCCCcccChhHHH-----------HHHHHHHHHHHCCCEEEEECCChHHHH-hhC
Confidence 999999999998 99999999998887766554 666677666666889999999988654 466
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 459 d~v~~l 464 (491)
T PRK10982 459 DRILVM 464 (491)
T ss_pred CEEEEE
Confidence 666665
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-18 Score=189.36 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=132.7
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++||+++|+ ++.+|+++||+| +|+|||||||||||++|+|. +..|+|. +++.
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~---~~~~------------- 67 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR---PAPG------------- 67 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC-------------
Confidence 588999999998 778999999999 99999999999999999664 5567776 4321
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccc-cch----h---------hHh------HhhhHHHHHHHhCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQV----H---------RKS------VKKGFDFTLMVVGESGL 209 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~----~---------~~e------~~~~v~~~L~~vGL~g~ 209 (541)
..+|||+|++.+++.+ ||.||+.++... ... . ..+ ....+.+.++.+|..+.
T Consensus 68 --~~i~~v~Q~~~~~~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (552)
T TIGR03719 68 --IKVGYLPQEPQLDPTK------TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139 (552)
T ss_pred --CEEEEEeccCCCCCCC------cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchh
Confidence 3589999999999889 999999875210 000 0 000 01122223333332210
Q ss_pred cchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCC
Q psy91 210 GKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 210 ~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
. +.+. .++..+.... .
T Consensus 140 ~-~~~~-------------------------------------------------------------~~l~~~~l~~--~ 155 (552)
T TIGR03719 140 D-RKLE-------------------------------------------------------------IAMDALRCPP--W 155 (552)
T ss_pred H-HHHH-------------------------------------------------------------HHHhhCCCCc--c
Confidence 0 0000 1222222211 2
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++. +++++|+|||..+.+..+.. .+.++|.+. +.++++.+
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~------~p~lLLLDEPt~~LD~~~~~-----------~l~~~L~~~---~~tvIiis 215 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLS------KPDMLLLDEPTNHLDAESVA-----------WLEQHLQEY---PGTVVAVT 215 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCChHHHH-----------HHHHHHHhC---CCeEEEEe
Confidence 45677899999999999999998 99999999997776655543 344445443 24888999
Q ss_pred ccchhhhhcccceeEEEc
Q psy91 370 KSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvIp 387 (541)
|+.+... .++.++.++.
T Consensus 216 Hd~~~~~-~~~d~v~~l~ 232 (552)
T TIGR03719 216 HDRYFLD-NVAGWILELD 232 (552)
T ss_pred CCHHHHH-hhcCeEEEEE
Confidence 9887554 3445555553
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-18 Score=184.76 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=129.6
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.+.++||++.|++ +.+|+++||+| ||+|||||||||||++|+| .+..|+|. ++|...
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~---I~G~~~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD---IKGSAA-------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE---ECCEee--------
Confidence 35789999999987 46999999999 9999999999999999965 46789988 777610
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.+...+.+.+ |+++|+.+.....+....+..+.+..+++.+|+..
T Consensus 89 ---------~i~~~~~l~~~l------TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~------------------ 135 (549)
T PRK13545 89 ---------LIAISSGLNGQL------TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK------------------ 135 (549)
T ss_pred ---------eEEeccccCCCC------cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 111223455667 99999877422112222333344555555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 136 -------------------------------------------------------------~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 136 -------------------------------------------------------------FIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred -------------------------------------------------------------HhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +|+++|+|||..|.+..... .+.++|.+..+.++++++.+|+++... .++.++.++
T Consensus 155 ArAL~~------~P~LLLLDEPTsgLD~~sr~-----------~LlelL~el~~~G~TIIIVSHdl~~i~-~l~DrIivL 216 (549)
T PRK13545 155 AISVHI------NPDILVIDEALSVGDQTFTK-----------KCLDKMNEFKEQGKTIFFISHSLSQVK-SFCTKALWL 216 (549)
T ss_pred HHHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 999998 99999999998776654432 566666665555789999999987543 344555554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-18 Score=189.91 Aligned_cols=186 Identities=15% Similarity=0.113 Sum_probs=132.3
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|+ +.+.
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~---~~~~------------ 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK---IGET------------ 384 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE---ECCc------------
Confidence 35799999999999889999999999 99999999999999999554 5678877 5222
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+||++|+. .+++.+ |+.+++.++......... ...+..++..+|+.
T Consensus 385 ---~~i~~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~-------------------- 433 (552)
T TIGR03719 385 ---VKLAYVDQSRDALDPNK------TVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFK-------------------- 433 (552)
T ss_pred ---eEEEEEeCCccccCCCC------cHHHHHHhhccccccCcc--hHHHHHHHHhCCCC--------------------
Confidence 1489999986 478888 999998876211111100 01112233333321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
....++.+..+|+|++|++.|+
T Consensus 434 ----------------------------------------------------------~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 434 ----------------------------------------------------------GSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred ----------------------------------------------------------hhHhcCchhhCCHHHHHHHHHH
Confidence 1122445677999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.|.+..+.. .+.++|.+.. .++++.+|+.+... .++.++.++.
T Consensus 456 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~---~~viivsHd~~~~~-~~~d~i~~l~ 514 (552)
T TIGR03719 456 KTLKS------GGNVLLLDEPTNDLDVETLR-----------ALEEALLEFA---GCAVVISHDRWFLD-RIATHILAFE 514 (552)
T ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHCC---CeEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887665543 4555555442 37889999987554 3566766664
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-18 Score=208.73 Aligned_cols=201 Identities=17% Similarity=0.208 Sum_probs=142.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+|+||+++|++ .++|+||||+| ||+||||||||||+++| +..+.+|+|. ++|. ++.....
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~---IDG~----dI~~i~l 1308 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL---IDGC----DISKFGL 1308 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE---ECCE----ecccCCH
Confidence 57999999999964 36999999999 99999999999999999 4568889999 8887 3333344
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++++++|+|++.||. | |+++|+.++. .. ..+.+.++++.+++.+.-.+ .=.|++.
T Consensus 1309 ~~LR~~IsiVpQdp~LF~---G----TIreNLd~~~---~~----tdeei~~Al~~a~l~~~I~~----lp~GLdt---- 1366 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFS---G----TVRFNLDPFN---EH----NDADLWESLERAHLKDVIRR----NSLGLDA---- 1366 (1622)
T ss_pred HHHHhccEEECCCCcccc---c----cHHHHhCcCC---CC----CHHHHHHHHHHcCcHHHHHh----CccccCc----
Confidence 456678999999999983 3 8999998762 11 23346667777776432110 0001100
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+. -..+|+||+|+++|+
T Consensus 1367 ---------------------------------------~Vge~---------------------G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1367 ---------------------------------------EVSEA---------------------GENFSVGQRQLLSLA 1386 (1622)
T ss_pred ---------------------------------------cccCC---------------------CCCCCHHHHHHHHHH
Confidence 01222 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+..-+..++. .+.+.++++. .++|+++..|.+..... ..++.+++
T Consensus 1387 RALLr------~p~ILILDEATSaLD~~Te~-----------~Iq~~I~~~~-~~~TvI~IAHRL~tI~~--~DrIlVLd 1446 (1622)
T PLN03130 1387 RALLR------RSKILVLDEATAAVDVRTDA-----------LIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILVLD 1446 (1622)
T ss_pred HHHHc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHC-CCCEEEEEeCChHHHHh--CCEEEEEE
Confidence 99999 99999999997764443332 4445555443 37899999988765432 46666665
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-19 Score=165.99 Aligned_cols=162 Identities=17% Similarity=0.256 Sum_probs=111.4
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
+++|+++.|+++.+|+++||++ +|+||||||||||+++|++ .+..|+|. ++|..+ .......++.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~---~~g~~~----~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL---LDGKDL----ASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CcCCHHHHHH
Confidence 3678999998888999999999 9999999999999999955 56789998 777622 1111111111
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
. ++++|| +++.+|+.+
T Consensus 74 ~--------------i~~~~q--------------------------~l~~~gl~~------------------------ 89 (180)
T cd03214 74 K--------------IAYVPQ--------------------------ALELLGLAH------------------------ 89 (180)
T ss_pred H--------------HhHHHH--------------------------HHHHcCCHh------------------------
Confidence 2 333333 222223221
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
..+..+..+|+|++|++.|+++++.
T Consensus 90 -------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 90 -------------------------------------------------------LADRPFNELSGGERQRVLLARALAQ 114 (180)
T ss_pred -------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0112345689999999999999999
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..... .+.+++.+..+. +.++++.+|+.+... .+..++.++
T Consensus 115 ------~p~llllDEP~~~LD~~~~~-----------~~~~~l~~~~~~~~~tiii~sh~~~~~~-~~~d~~~~l 171 (180)
T cd03214 115 ------EPPILLLDEPTSHLDIAHQI-----------ELLELLRRLARERGKTVVMVLHDLNLAA-RYADRVILL 171 (180)
T ss_pred ------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99999999998876655543 566666665444 678899999877543 244555554
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-18 Score=208.00 Aligned_cols=241 Identities=16% Similarity=0.187 Sum_probs=140.1
Q ss_pred ceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccC-Cccceecccccc
Q psy91 79 YIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVN-GSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~-G~~~~~~~~~~~ 146 (541)
.|+++||++.|+. .++|+|+||+| ||+||||||||||+++| +..|.+|+|+ ++ |. .+....
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~---i~~g~----~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII---INDSH----NLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE---EeCCc----chhhCC
Confidence 6999999999975 36999999999 99999999999999999 5568899999 74 45 222222
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccc-h------------hhHhHh---hhHHH-HHHHhCCCCc
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-V------------HRKSVK---KGFDF-TLMVVGESGL 209 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~------------~~~e~~---~~v~~-~L~~vGL~g~ 209 (541)
...+++.+|||+|++.+|+ . |++||+.++..... . ...+.. ....+ .....+.. .
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~-~------TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 526 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFS-N------SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM-S 526 (1466)
T ss_pred HHHHHHhccEecccccchh-c------cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhc-c
Confidence 3345567999999998885 6 99999998732100 0 000000 00000 00000000 0
Q ss_pred cchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc-ccC
Q psy91 210 GKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS-DLY 288 (541)
Q Consensus 210 ~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~-~~~ 288 (541)
-+......+...... .. .........++. +|-..|++.|-.. +-.
T Consensus 527 ~~~~~~~~l~~~~~~--~~-------------------~~~~~v~~a~~~-------------~~l~~~i~~lp~g~dT~ 572 (1466)
T PTZ00265 527 NTTDSNELIEMRKNY--QT-------------------IKDSEVVDVSKK-------------VLIHDFVSALPDKYETL 572 (1466)
T ss_pred cccchhhhhhccccc--cc-------------------CCHHHHHHHHHH-------------hCcHHHHHhCccccCce
Confidence 000000000000000 00 000000000000 0112344433211 001
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceee
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTI 367 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i 367 (541)
-......+|+||+|+++|+++++. +|+++|+|||+.+.+..+.. .+.+.|.+..+ .++|+++
T Consensus 573 vg~~g~~LSGGQkQRiaIARAll~------~P~ILlLDEpTSaLD~~se~-----------~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 573 VGSNASKLSGGQKQRISIARAIIR------NPKILILDEATSSLDNKSEY-----------LVQKTINNLKGNENRITII 635 (1466)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCcccccCHHHHH-----------HHHHHHHHHhhcCCCEEEE
Confidence 123456799999999999999999 99999999997776554443 56666666544 4789999
Q ss_pred ccccchhhhhcccceeEEEc
Q psy91 368 EKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 368 ~~~~~di~~~~l~~rvnvIp 387 (541)
.+|++... +...++.++.
T Consensus 636 IsHrls~i--~~aD~Iivl~ 653 (1466)
T PTZ00265 636 IAHRLSTI--RYANTIFVLS 653 (1466)
T ss_pred EeCCHHHH--HhCCEEEEEe
Confidence 99987654 3566666664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-18 Score=208.01 Aligned_cols=201 Identities=17% Similarity=0.163 Sum_probs=141.3
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+|+||+++|++ +++|+|+||+| ||+||||||||||+++| +..+.+|+|. ++|. ++.....
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~---IdG~----di~~i~~ 1305 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM---IDDC----DVAKFGL 1305 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEE---ECCE----EhhhCCH
Confidence 46999999999954 46999999999 99999999999999999 4568889999 8887 3333334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+++|+|++.+|+ - |+++|+.++. .. ..+.+.++++.+|+.+.-.+ .-.|++.
T Consensus 1306 ~~lR~~i~iVpQdp~LF~-g------TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~----lp~GLdt---- 1363 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFS-G------TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDR----NPFGLDA---- 1363 (1495)
T ss_pred HHHHhhcEEECCCCeeeC-c------cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHh----CcCCCCc----
Confidence 456678999999999984 3 8999998762 11 22345666777776432110 0001100
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+. -..+|+||+|+++|+
T Consensus 1364 ---------------------------------------~v~e~---------------------G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232 1364 ---------------------------------------EVSEG---------------------GENFSVGQRQLLSLA 1383 (1495)
T ss_pred ---------------------------------------eecCC---------------------CCCCCHHHHHHHHHH
Confidence 11222 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+..-+..++. .+.+.+.++. .++|+++..|.++... -..++.+++
T Consensus 1384 RALLr------~~~ILILDEATSaLD~~Te~-----------~Iq~~L~~~~-~~~TvI~IAHRl~ti~--~~DrIlVL~ 1443 (1495)
T PLN03232 1384 RALLR------RSKILVLDEATASVDVRTDS-----------LIQRTIREEF-KSCTMLVIAHRLNTII--DCDKILVLS 1443 (1495)
T ss_pred HHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEeCCHHHHH--hCCEEEEEE
Confidence 99999 99999999997764433332 4444454442 3688998898875433 255666664
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-18 Score=169.67 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=115.3
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCc
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTV 162 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~ 162 (541)
.+.+|+++||+| ||+|||||||||||++|+| .+..|+|. ++|. ++++.|...
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~---~~g~-----------------~~~~~~~~~ 95 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD---RNGE-----------------VSVIAISAG 95 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCE-----------------EeEEecccC
Confidence 356999999999 9999999999999999966 46678887 6664 234556555
Q ss_pred cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCC
Q psy91 163 LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSD 242 (541)
Q Consensus 163 l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~ 242 (541)
+.+.+ |+.+|+.++....+....+....+..++..+++..
T Consensus 96 ~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------------------- 135 (264)
T PRK13546 96 LSGQL------TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE---------------------------------- 135 (264)
T ss_pred CCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------------------------------
Confidence 66667 88888876421111112222222233333333211
Q ss_pred eeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeE
Q psy91 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322 (541)
Q Consensus 243 vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L 322 (541)
..+..+..+|+|++|++.|+++++. ++++
T Consensus 136 ---------------------------------------------~~~~~~~~LS~Gq~qrv~Laral~~------~p~i 164 (264)
T PRK13546 136 ---------------------------------------------FIYQPVKKYSSGMRAKLGFSINITV------NPDI 164 (264)
T ss_pred ---------------------------------------------hhcCCcccCCHHHHHHHHHHHHHhh------CCCE
Confidence 1122345689999999999999998 9999
Q ss_pred EEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 323 TVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 323 ~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+|+|||..|.+..... .+.+.|.+..+.++++++.+|+.+... .++.++.++
T Consensus 165 LlLDEPt~gLD~~~~~-----------~l~~~L~~~~~~g~tiIiisH~~~~i~-~~~d~i~~l 216 (264)
T PRK13546 165 LVIDEALSVGDQTFAQ-----------KCLDKIYEFKEQNKTIFFVSHNLGQVR-QFCTKIAWI 216 (264)
T ss_pred EEEeCccccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-HHcCEEEEE
Confidence 9999998776544332 566666665556889999999877543 234455444
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-18 Score=188.55 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=129.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. +.|.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~---~~~~------------- 381 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK---WSEN------------- 381 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCc-------------
Confidence 4799999999999888999999999 99999999999999999664 5677777 5543
Q ss_pred ccccEEEEeCCCc--cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 150 RQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 150 ~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+|||+|+.. +++.+ |+.+++.+... . ....+.+..+++.+|+..
T Consensus 382 --~~i~~~~q~~~~~~~~~~------t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~------------------- 429 (530)
T PRK15064 382 --ANIGYYAQDHAYDFENDL------TLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQ------------------- 429 (530)
T ss_pred --eEEEEEcccccccCCCCC------cHHHHHHHhcc----C-CccHHHHHHHHHHcCCCh-------------------
Confidence 35899999864 45567 88887643210 0 011223344444444321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ ..++.+..+|+|++|++.|+
T Consensus 430 ----------------------------------------------------------~-~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 430 ----------------------------------------------------------D-DIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred ----------------------------------------------------------h-HhcCcccccCHHHHHHHHHH
Confidence 0 22345678999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|.+..+.. .+.++|.+. +.++++.+|+.+... .++.++.++.
T Consensus 451 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~---~~tvi~vsHd~~~~~-~~~d~i~~l~ 509 (530)
T PRK15064 451 KLMMQ------KPNVLVMDEPTNHMDMESIE-----------SLNMALEKY---EGTLIFVSHDREFVS-SLATRIIEIT 509 (530)
T ss_pred HHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHC---CCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998876655443 344444443 348899999987543 3456666653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-18 Score=204.98 Aligned_cols=192 Identities=18% Similarity=0.185 Sum_probs=138.5
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
.+.+|+|||+.+ +|+|||||||||||++|++. +.+|+|. ++|..+ .... ...++.++||+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~---~~G~~~----~~~~-~~~r~~i~yv~ 144 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT---YDGITP----EEIK-KHYRGDVVYNA 144 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE---ECCEeh----HHHH-hhcCceeEEec
Confidence 467999999999 99999999999999999764 3689999 888722 1111 12345699999
Q ss_pred CCCccccccccccCCCcccceeccc---ccc----chhhHhHhhh-HHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFAT---LPE----QVHRKSVKKG-FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~~---~~~----~~~~~e~~~~-v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
|++.+++.+ ||+|++.|+. .+. ...+.+..++ ++.+++.+|+.++.++.++
T Consensus 145 Q~d~~~~~l------TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg--------------- 203 (1394)
T TIGR00956 145 ETDVHFPHL------TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG--------------- 203 (1394)
T ss_pred cccccCCCC------CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC---------------
Confidence 999999999 9999999862 121 1222332333 4567888888764333221
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+..+..+|+|++||++|++++
T Consensus 204 -----------------------------------------------------------~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 204 -----------------------------------------------------------NDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred -----------------------------------------------------------CCcCCCCCcccchHHHHHHHH
Confidence 123456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++++|||+.|.+..... .+.+.|++..+. ++++++.+|+..-+...+..++.++.
T Consensus 225 ~~------~p~vlllDEPTsgLD~~~~~-----------~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~ 285 (1394)
T TIGR00956 225 LG------GAKIQCWDNATRGLDSATAL-----------EFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY 285 (1394)
T ss_pred Hh------CCCEEEEeCCCCCcCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Confidence 98 99999999998887665553 677777777654 78889988875433334556666653
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-18 Score=187.47 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=131.4
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++||++.|+++.+|++|||+| +|+|||||||||||++|+| .+.+|+|. +.+.
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~---~~~~------------ 386 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK---IGET------------ 386 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCc------------
Confidence 34699999999999889999999999 9999999999999999965 46678777 5222
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+|||+|+. .+++.+ ||.+|+.++......... ...+..+++.+|+.
T Consensus 387 ---~~i~~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~-------------------- 435 (556)
T PRK11819 387 ---VKLAYVDQSRDALDPNK------TVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFK-------------------- 435 (556)
T ss_pred ---eEEEEEeCchhhcCCCC------CHHHHHHhhccccccccc--HHHHHHHHHhCCCC--------------------
Confidence 1489999986 678888 999998875211110000 01111223333321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
....++.+..+|+|++|++.|+
T Consensus 436 ----------------------------------------------------------~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 436 ----------------------------------------------------------GGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred ----------------------------------------------------------hhHhcCchhhCCHHHHHHHHHH
Confidence 1122445678999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|.+..+.. .+.++|.+.. .++++.+|+.+... .++.++.++.
T Consensus 458 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~---~tvi~vtHd~~~~~-~~~d~i~~l~ 516 (556)
T PRK11819 458 KTLKQ------GGNVLLLDEPTNDLDVETLR-----------ALEEALLEFP---GCAVVISHDRWFLD-RIATHILAFE 516 (556)
T ss_pred HHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHhCC---CeEEEEECCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887665543 4555555442 37888999877443 3556666663
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-18 Score=158.89 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=137.7
Q ss_pred ceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhcCC----CCCCeeecccCCccceeccccccc
Q psy91 79 YIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD----LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 79 ~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.++||++...++ .||++||++| |||||||||||||.++|+|.+ +.|+|. ++|+++. ..+.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~---~~GedI~----~l~~ 75 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL---FDGEDIL----ELSP 75 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEE---ECCcccc----cCCH
Confidence 46889999999885 9999999999 999999999999999998766 589999 9999543 2222
Q ss_pred cc-ccccEEEEeCCCccccccccccCCCcccceeccccc-cchh--hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 RG-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVH--RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 ~~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~--~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.. .+..+..-||.+.-+|.. ++.+.+..+.-. .+.. ..+....+.+.++.+++..
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV------~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~--------------- 134 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGV------TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE--------------- 134 (251)
T ss_pred hHHHhcCCEEeecCCccCCCe------eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH---------------
Confidence 22 344677889999888877 777655544100 0000 1233444555566655542
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC-CCCCCCCCc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV-PNVNDRQGK 302 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~-~~ls~g~~q 302 (541)
.|+ ++.+ ...|||+++
T Consensus 135 -----------------------------------------------------~~l----------~R~vN~GFSGGEkK 151 (251)
T COG0396 135 -----------------------------------------------------EFL----------ERYVNEGFSGGEKK 151 (251)
T ss_pred -----------------------------------------------------HHh----------hcccCCCcCcchHH
Confidence 011 1111 236889999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
|.+|...++. +|++.|+|||-.|-+++... .+.+-++.....++.+++.+|.-+|..--...+
T Consensus 152 R~EilQ~~~l------ePkl~ILDE~DSGLDIdalk-----------~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLL------EPKLAILDEPDSGLDIDALK-----------IVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhc------CCCEEEecCCCcCccHHHHH-----------HHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 9998888877 99999999999999988765 222333333445888999999888766322345
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
|+|+
T Consensus 215 vhvl 218 (251)
T COG0396 215 VHVL 218 (251)
T ss_pred EEEE
Confidence 5554
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-18 Score=157.96 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=47.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
+.++|+++.|+++++|+++||++ +|+|||||||||||++|+| .+..|+|. ++|.
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~---~~g~ 62 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL---VDGK 62 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCE
Confidence 46889999999889999999999 9999999999999999955 45678887 6665
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=168.46 Aligned_cols=205 Identities=20% Similarity=0.194 Sum_probs=154.9
Q ss_pred CCCceeeecccccccc-----------cceeecceEEE------EEEcCCCCCHHHHHHHHh-cCCCCCCeeecccCCcc
Q psy91 76 DRDYIGFATLPEQVHR-----------KSVKKGFDFTL------MVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNGSN 137 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~-~~~~~G~i~~~~~~G~~ 137 (541)
.++.++.+++.+.|.- ..++++|||++ +|||.||||||||=.+|+ ..+..|+|+ +.|+.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~---F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIR---FDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEE---ECCcc
Confidence 4457788888777742 24899999998 999999999999999993 335569999 99984
Q ss_pred ceecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCccchh
Q psy91 138 TVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 138 ~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
+. ..+....+..++.+-.||||+ .|.|.+ ||.+-+.-+..-. ..++.+..+++.++|..+||+..
T Consensus 350 i~-~~~~~~mrplR~~mQvVFQDPygSLsPRm------tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~---- 418 (534)
T COG4172 350 ID-GLSRKEMRPLRRRMQVVFQDPYGSLSPRM------TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA---- 418 (534)
T ss_pred cc-ccChhhhhhhhhhceEEEeCCCCCCCccc------CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChh----
Confidence 42 223333445667889999996 688888 9988887773222 45778888999999999999640
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
..++++
T Consensus 419 --------------------------------------------------------------------------~r~RYP 424 (534)
T COG4172 419 --------------------------------------------------------------------------TRNRYP 424 (534)
T ss_pred --------------------------------------------------------------------------HhhcCC
Confidence 224567
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSM 372 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~ 372 (541)
...||||+|+++|+++++. +|+++++|||+...+. -+..|+.+.|.+.++ .+-+.++.+|++
T Consensus 425 hEFSGGQRQRIAIARAliL------kP~~i~LDEPTSALD~-----------SVQaQvv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 425 HEFSGGQRQRIAIARALIL------KPELILLDEPTSALDR-----------SVQAQVLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred cccCcchhhHHHHHHHHhc------CCcEEEecCCchHhhH-----------HHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 8899999999999999999 9999999999765332 234488888888865 467888889887
Q ss_pred hhhhhcccceeEEE
Q psy91 373 DIEERGVKLRLTVV 386 (541)
Q Consensus 373 di~~~~l~~rvnvI 386 (541)
.+. +.++.+|.|.
T Consensus 488 ~Vv-rAl~~~viVm 500 (534)
T COG4172 488 AVV-RALCHRVIVM 500 (534)
T ss_pred HHH-HHhhceEEEE
Confidence 754 3466666554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-18 Score=169.08 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=152.5
Q ss_pred CCceeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhc-------CCCCCCeeecccCCccce
Q psy91 77 RDYIGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-------SDLYGDRKVPNVNGSNTV 139 (541)
Q Consensus 77 ~~~i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-------~~~~G~i~~~~~~G~~~~ 139 (541)
.+.+.++||++.|+ ...++++|||+| ||||.||||||-..+.+++ ...+|+|. ++|+++.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~---f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL---FDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE---EcChhhh
Confidence 45789999999996 567999999999 9999999999976666622 22357888 8888654
Q ss_pred ecccccccccccccEEEEeCCC--ccccccccccCCCcccceecc-ccccchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 140 IEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFA-TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 140 ~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~-~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
..........+-..|+++||++ .|.|-. |+...+.-. ++..++++...++++-++|+.+|+....+
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~------tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~----- 149 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLH------TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK----- 149 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHh------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh-----
Confidence 3322222223445799999996 566766 666544433 44556778888889999999999864100
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
..+.++..+
T Consensus 150 -----------------------------------------------------------------------rl~~yPHeL 158 (534)
T COG4172 150 -----------------------------------------------------------------------RLDAYPHEL 158 (534)
T ss_pred -----------------------------------------------------------------------hhhhCCccc
Confidence 123467889
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
|||++|+|.|+.+++. +|+|+|.|||+.-.++... .|+.++|++.++. +-.+.+.+|++.|.
T Consensus 159 SGGqRQRVMIAMALan------~P~lLIADEPTTALDVtvQ-----------aQIL~Ll~~Lq~~~gMa~lfITHDL~iV 221 (534)
T COG4172 159 SGGQRQRVMIAMALAN------EPDLLIADEPTTALDVTVQ-----------AQILDLLKELQAELGMAILFITHDLGIV 221 (534)
T ss_pred CcchhhHHHHHHHHcC------CCCeEeecCCcchhhhhhH-----------HHHHHHHHHHHHHhCcEEEEEeccHHHH
Confidence 9999999999999999 9999999999665554433 3888888888654 77888999998876
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. ++..+|+|.
T Consensus 222 r-~~ADrV~VM 231 (534)
T COG4172 222 R-KFADRVYVM 231 (534)
T ss_pred H-HhhhhEEEE
Confidence 4 466676654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-17 Score=197.45 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=128.3
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CC---CCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DL---YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~---~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
.+.+|+|||+.| +|+|||||||||||++|++. +. .|+|. ++|.. .... ..++.++||+|
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~---~nG~~----~~~~---~~~~~i~yv~Q 246 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT---YNGYR----LNEF---VPRKTSAYISQ 246 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE---ECCEe----chhh---cccceeEEecc
Confidence 467999999999 99999999999999999765 33 68888 77762 2111 12457999999
Q ss_pred CCccccccccccCCCcccceeccccccc----------hhhHhHh------------------------hhHHHHHHHhC
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFATLPEQ----------VHRKSVK------------------------KGFDFTLMVVG 205 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~~~~~~----------~~~~e~~------------------------~~v~~~L~~vG 205 (541)
++.+++++ ||+|++.|+..... ..+.+.. ..++.+++.+|
T Consensus 247 ~d~~~~~l------TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lG 320 (1470)
T PLN03140 247 NDVHVGVM------TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILG 320 (1470)
T ss_pred cccCCCcC------cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcC
Confidence 99999999 99999998721110 0111100 01222333333
Q ss_pred CCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc
Q psy91 206 ESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 206 L~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~ 285 (541)
|.++.++.
T Consensus 321 L~~~~~t~------------------------------------------------------------------------ 328 (1470)
T PLN03140 321 LDICKDTI------------------------------------------------------------------------ 328 (1470)
T ss_pred CccccCce------------------------------------------------------------------------
Confidence 33321111
Q ss_pred ccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcc
Q psy91 286 DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKT 364 (541)
Q Consensus 286 ~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt 364 (541)
..+..+..+|+|++|+++|+++++. +++++++|||..|.+..+.. ++.+.|++..+ .++|
T Consensus 329 --vg~~~~rglSGGerkRVsia~aL~~------~p~vlllDEPTsGLDs~t~~-----------~i~~~Lr~la~~~g~T 389 (1470)
T PLN03140 329 --VGDEMIRGISGGQKKRVTTGEMIVG------PTKTLFMDEISTGLDSSTTY-----------QIVKCLQQIVHLTEAT 389 (1470)
T ss_pred --eCCccccCCCcccceeeeehhhhcC------CCcEEEEeCCCcCccHHHHH-----------HHHHHHHHHHHhcCCE
Confidence 1233456789999999999999998 99999999998886655543 67777777755 4788
Q ss_pred eeeccccchhhhhcccceeEEE
Q psy91 365 TTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+|...-+.-.+..++.++
T Consensus 390 viis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 390 VLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred EEEEecCCCHHHHHHhheEEEe
Confidence 8998886532222355555554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-18 Score=188.00 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=130.4
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
...+.++||++.|+++.+|+++||+| ||+|||||||||||++|+|. +++|+|. + |. .
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~---~-~~----~------- 381 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH---C-GT----K------- 381 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---E-CC----C-------
Confidence 34799999999999889999999999 99999999999999999664 5678877 5 43 1
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+||++|+. .+++.+ ||.+++.++........ ....+..++..+|+.+
T Consensus 382 ---~~i~y~~q~~~~l~~~~------tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~------------------- 431 (635)
T PRK11147 382 ---LEVAYFDQHRAELDPEK------TVMDNLAEGKQEVMVNG--RPRHVLGYLQDFLFHP------------------- 431 (635)
T ss_pred ---cEEEEEeCcccccCCCC------CHHHHHHhhcccccccc--hHHHHHHHHHhcCCCH-------------------
Confidence 1489999975 588888 99999876521100000 0112222333322210
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
...++.+..+|+|+++++.|+
T Consensus 432 -----------------------------------------------------------~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 432 -----------------------------------------------------------KRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred -----------------------------------------------------------HHHhChhhhCCHHHHHHHHHH
Confidence 012345667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||+.|.+..+.. .+.+++.+. +.++++++|+.++.. .++.++.++
T Consensus 453 ~al~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~~---~~tvi~vSHd~~~~~-~~~d~i~~l 510 (635)
T PRK11147 453 RLFLK------PSNLLILDEPTNDLDVETLE-----------LLEELLDSY---QGTVLLVSHDRQFVD-NTVTECWIF 510 (635)
T ss_pred HHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHhC---CCeEEEEECCHHHHH-HhcCEEEEE
Confidence 99998 99999999998887765543 444444443 348899999977553 355666655
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-18 Score=203.18 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=140.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+|+||+++|+. ..+|+||||+| ||+|+||||||||+++| +..+..|+|. ++|. ++.....
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~---IdG~----dI~~i~~ 1355 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII---IDGL----NIAKIGL 1355 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE---ECCE----EccccCH
Confidence 56999999999975 46999999999 99999999999999999 4567889999 8888 4444444
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+++|+|++.||. | |+++|+.... ..+ .+.+..+++.+|+...-.+. =.|++.
T Consensus 1356 ~~LR~~i~iVpQdp~LF~---g----TIr~NLdp~~---~~s----deei~~al~~a~l~~~I~~l----p~GLdt---- 1413 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFS---G----SLRMNLDPFS---QYS----DEEVWWALELAHLKTFVSAL----PDKLDH---- 1413 (1522)
T ss_pred HHHHhcCeEECCCCcccC---c----cHHHHcCccc---CCC----HHHHHHHHHHcCcHHHHhhC----ccCCCc----
Confidence 456678999999999984 3 8999997321 112 23455667777775321110 001110
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+.| ..+|+||+|+++|+
T Consensus 1414 ---------------------------------------~v~e~G---------------------~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1414 ---------------------------------------ECAEGG---------------------ENLSVGQRQLVCLA 1433 (1522)
T ss_pred ---------------------------------------eecCCC---------------------CcCCHHHHHHHHHH
Confidence 012222 35899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+..-+...+. .+.+.++++ ..++|+++..|.++... -..++.+++
T Consensus 1434 RALLr------~~~ILiLDEaTSalD~~Te~-----------~Iq~~l~~~-~~~~TvI~IAHRl~ti~--~~DrIlVld 1493 (1522)
T TIGR00957 1434 RALLR------KTKILVLDEATAAVDLETDN-----------LIQSTIRTQ-FEDCTVLTIAHRLNTIM--DYTRVIVLD 1493 (1522)
T ss_pred HHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHH-cCCCEEEEEecCHHHHH--hCCEEEEEE
Confidence 99998 99999999997764433332 444445443 24688888888875433 345666665
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-17 Score=202.44 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=139.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.|+||+++|++ ..+|+||||+| ||+|+||||||||+++| +..+..|+|+ ++|. ++.....
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~---IDG~----di~~i~l 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR---VNGR----EIGAYGL 1379 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCE----EcccCCH
Confidence 56999999999965 35999999999 99999999999999999 4567789999 8888 3333344
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++.+++|+|++.||. | |+++|+.... .. ..+.+..+++.+|+...-.+ + +
T Consensus 1380 ~~LR~~I~iVpQdp~LF~---g----TIreNIdp~~---~~----sdeeI~~Al~~a~l~~~I~~--------l--p--- 1432 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFD---G----TVRQNVDPFL---EA----SSAEVWAALELVGLRERVAS--------E--S--- 1432 (1560)
T ss_pred HHHHhcceEECCCCcccc---c----cHHHHhCccc---CC----CHHHHHHHHHHCCChHHHhh--------C--c---
Confidence 456678999999999984 3 8999997531 11 22456677888887542110 0 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|++- .+|+. -..+|+||+|+++|+
T Consensus 1433 -------------------------------~Gldt---~vge~---------------------G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1433 -------------------------------EGIDS---RVLEG---------------------GSNYSVGQRQLMCMA 1457 (1560)
T ss_pred -------------------------------ccccc---cccCC---------------------cCcCCHHHHHHHHHH
Confidence 00000 01222 235899999999999
Q ss_pred eeEEEeeecCee-eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVK-LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~-~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. + ++++|+|||+..-+...+. ++.+.|.+. ..++|+++..|.+.... -..++.++
T Consensus 1458 RALL~------~~~~ILlLDEATSaLD~~te~-----------~Iq~~L~~~-~~~~TvI~IAHRl~ti~--~~DrIlVL 1517 (1560)
T PTZ00243 1458 RALLK------KGSGFILMDEATANIDPALDR-----------QIQATVMSA-FSAYTVITIAHRLHTVA--QYDKIIVM 1517 (1560)
T ss_pred HHHhc------CCCCEEEEeCCCccCCHHHHH-----------HHHHHHHHH-CCCCEEEEEeccHHHHH--hCCEEEEE
Confidence 99986 6 8999999997754433332 444444433 23688888888875443 34566665
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 1518 d 1518 (1560)
T PTZ00243 1518 D 1518 (1560)
T ss_pred E
Confidence 4
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-18 Score=185.88 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=132.8
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++|+++.|++. .|+++||+| +|+|||||||||||++|+|. +..|+|. ++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~---~~-------------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD---PE-------------- 399 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---Ee--------------
Confidence 3568999999999875 599999998 99999999999999999664 4566655 21
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++|++|+..+.+.+ ||.+++.++.. .... ...+.++++.+|+.+
T Consensus 400 ---~~i~y~~Q~~~~~~~~------tv~e~l~~~~~--~~~~---~~~~~~~L~~l~l~~-------------------- 445 (590)
T PRK13409 400 ---LKISYKPQYIKPDYDG------TVEDLLRSITD--DLGS---SYYKSEIIKPLQLER-------------------- 445 (590)
T ss_pred ---eeEEEecccccCCCCC------cHHHHHHHHhh--hcCh---HHHHHHHHHHCCCHH--------------------
Confidence 1489999998888888 99999876411 0000 112233344443321
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..++.+..+|+|++|++.|++
T Consensus 446 -----------------------------------------------------------~~~~~~~~LSGGe~QRvaiAr 466 (590)
T PRK13409 446 -----------------------------------------------------------LLDKNVKDLSGGELQRVAIAA 466 (590)
T ss_pred -----------------------------------------------------------HHhCCcccCCHHHHHHHHHHH
Confidence 234567789999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.|.+..+.. .+.+.|.+..+ .+.++++.+|+++... .+..++.++.
T Consensus 467 aL~~------~p~llLLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tviivsHD~~~~~-~~aDrvivl~ 528 (590)
T PRK13409 467 CLSR------DADLYLLDEPSAHLDVEQRL-----------AVAKAIRRIAEEREATALVVDHDIYMID-YISDRLMVFE 528 (590)
T ss_pred HHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEc
Confidence 9998 99999999998887665543 56666666654 3788999999977543 3566777664
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-18 Score=185.04 Aligned_cols=195 Identities=16% Similarity=0.123 Sum_probs=134.3
Q ss_pred Cceeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..|+++||+++|+++ .+|+|+||++ ||+||||||||||+++|++ .|.+|+|. ++|. .+..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~---~~g~----~i~~ 408 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL---LDGA----AVSA 408 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCE----ECCC
Confidence 468999999999752 5999999999 9999999999999999954 67899999 8887 3332
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++||+|+..+|.. |+++|.. + ....+.+..+++.+|+...-..
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~-------ti~~n~~----~-----~~~~~~~~~~~~~~~l~~~~~~------------ 460 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDD-------LIGPDEG----E-----HASLDNAQQYLQRLEIADKVKI------------ 460 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhh-------hhhcccc----c-----chhHHHHHHHHHHcCCchhhcc------------
Confidence 2233445679999999888854 5667631 1 1122345556666665431000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..+|. . ....+|+|++|++
T Consensus 461 --------------------------------lp~g~---------------------------~--t~~~LSgGq~qRl 479 (555)
T TIGR01194 461 --------------------------------EDGGF---------------------------S--TTTALSTGQQKRL 479 (555)
T ss_pred --------------------------------ccccc---------------------------C--CcccCCHHHHHHH
Confidence 00000 0 0145899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh-hhhcccCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF-NDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l-~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+|+++.+. +++++|+|||+.+-+..+.. .+.+.+ ......++|+++.+|+.... ....++
T Consensus 480 alaRall~------~~~ililDE~ts~LD~~~~~-----------~i~~~l~~~~~~~~~tiiiisH~~~~~--~~~d~i 540 (555)
T TIGR01194 480 ALICAWLE------DRPILLFDEWAADQDPAFKR-----------FFYEELLPDLKRQGKTIIIISHDDQYF--ELADQI 540 (555)
T ss_pred HHHHHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeccHHHH--HhCCEE
Confidence 99999999 99999999998876655543 343322 22234578999999987643 345566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.+++
T Consensus 541 ~~l~ 544 (555)
T TIGR01194 541 IKLA 544 (555)
T ss_pred EEEE
Confidence 5553
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-18 Score=154.79 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=130.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+..++|+...+.+.++.++||++ .|.||||||||||||+| +..|.+|+|+ ++|. .++..+ ....
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~---~~~~----~i~~~~-~~~~ 74 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY---WQGE----PIQNVR-ESYH 74 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE---ecCC----CCccch-hhHH
Confidence 45678888889999999999999 89999999999999999 5578899999 8777 222211 1122
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+-|+--...+=+.+ ||.||+.|-....+ ......+.++++.+||.+.
T Consensus 75 ~~l~yLGH~~giK~eL------Ta~ENL~F~~~~~~---~~~~~~i~~Al~~vgL~g~---------------------- 123 (209)
T COG4133 75 QALLYLGHQPGIKTEL------TALENLHFWQRFHG---SGNAATIWEALAQVGLAGL---------------------- 123 (209)
T ss_pred HHHHHhhccccccchh------hHHHHHHHHHHHhC---CCchhhHHHHHHHcCcccc----------------------
Confidence 3456777777888889 99999998622111 1223456778888888762
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+.++..+|.||+++++|++-.+
T Consensus 124 ---------------------------------------------------------~dlp~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 124 ---------------------------------------------------------EDLPVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred ---------------------------------------------------------cccchhhcchhHHHHHHHHHHHc
Confidence 23345678999999999999988
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
. ...|+|+|||...-+..+. ..|...+.+-...+--++..+|.
T Consensus 147 s------~~pLWiLDEP~taLDk~g~-----------a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 147 S------PAPLWILDEPFTALDKEGV-----------ALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred C------CCCceeecCcccccCHHHH-----------HHHHHHHHHHhcCCCEEEEecCC
Confidence 8 8999999999665444433 26666666666666656666654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-17 Score=183.10 Aligned_cols=193 Identities=17% Similarity=0.126 Sum_probs=132.2
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++|+++.|+ ++.+|+++||+| +|+||||||||||+++|++. +..|+|. .++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~---~~~------------- 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT---KPA------------- 513 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe---ecC-------------
Confidence 4689999999995 557999999999 99999999999999999664 3345544 211
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++||+|++.+++ . |++||+.++....... .....+.+..+++.+|+.+..+. +
T Consensus 514 --~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-----------~--- 570 (659)
T TIGR00954 514 --KGKLFYVPQRPYMTL-G------TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-----------E--- 570 (659)
T ss_pred --CCcEEEECCCCCCCC-c------CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-----------c---
Confidence 346899999987653 4 8999998873211110 11112345566777776532111 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.|+.. .. .....+|+|++|++.|+
T Consensus 571 ---------------~g~~~----------------------------------------~~-~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 571 ---------------GGWSA----------------------------------------VQ-DWMDVLSGGEKQRIAMA 594 (659)
T ss_pred ---------------CCccc----------------------------------------cc-ccccCCCHHHHHHHHHH
Confidence 00000 00 12346899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||..+-+..... .+.+.+.+ .++++++.+|+.+.. ..+.++.+++
T Consensus 595 Ral~~------~p~illLDEpts~LD~~~~~-----------~l~~~l~~---~~~tvI~isH~~~~~--~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYH------KPQFAILDECTSAVSVDVEG-----------YMYRLCRE---FGITLFSVSHRKSLW--KYHEYLLYMD 652 (659)
T ss_pred HHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHH---cCCEEEEEeCchHHH--HhCCEEEEEe
Confidence 99999 99999999998876655442 44444543 378899999998754 4567777765
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-18 Score=189.98 Aligned_cols=211 Identities=16% Similarity=0.159 Sum_probs=122.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++||+++|+++.+|++|||+| ||+|||||||||||++|+|. +++|+|. +.|.
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~---~~~~--------------- 63 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYT---FPGN--------------- 63 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC---------------
Confidence 68999999999999999999999 99999999999999999664 6678887 6554
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..++|+.|+...+ .. ++.+.+.-.. ... ......+......... ..+..............
T Consensus 64 ~~i~~~~q~~~~~-~~------~~~~~v~~~~--~~~------~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 124 (638)
T PRK10636 64 WQLAWVNQETPAL-PQ------PALEYVIDGD--REY------RQLEAQLHDANERNDG-HAIATIHGKLDAIDAWT--- 124 (638)
T ss_pred CEEEEEecCCCCC-CC------CHHHHHHHhh--HHH------HHHHHHHHHHhccCCH-HHHHHHHHHHHhcCCcc---
Confidence 1368888853222 12 3222221100 000 0000000000000000 00000000000000000
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
. .. --..++..|.......++.+..+|+|+++++.|+++++
T Consensus 125 --------------------~-~~------------------~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~ 165 (638)
T PRK10636 125 --------------------I-RS------------------RAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165 (638)
T ss_pred --------------------h-HH------------------HHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence 0 00 00224445544322346677889999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|+++|+|||+.|.+..... .+.++|.+. +.++++++|+.++.. .++.++.++.
T Consensus 166 ~------~P~lLLLDEPtn~LD~~~~~-----------~L~~~L~~~---~~tviivsHd~~~l~-~~~d~i~~L~ 220 (638)
T PRK10636 166 C------RSDLLLLDEPTNHLDLDAVI-----------WLEKWLKSY---QGTLILISHDRDFLD-PIVDKIIHIE 220 (638)
T ss_pred c------CCCEEEEcCCCCcCCHHHHH-----------HHHHHHHhC---CCeEEEEeCCHHHHH-HhcCEEEEEe
Confidence 8 99999999998877765543 344455443 458899999987654 3555555554
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-17 Score=182.39 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=132.3
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++|++++|++ +++|+|+||+| ||+||||||||||+++|+| .+.+|+|. ++|. .+......
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~---~~g~----~~~~~~~~ 393 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL---LDGK----PVTAEQPE 393 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCE----ECCCCCHH
Confidence 36899999999975 56999999999 9999999999999999954 57889999 8887 33322333
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|+..+++. |+++| + .. ...+.+.++++.+|+.....
T Consensus 394 ~~~~~i~~v~q~~~lf~~-------ti~~n---~---~~----~~~~~~~~~~~~~~l~~~~~----------------- 439 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQ-------LLGPE---G---KP----ANPALVEKWLERLKMAHKLE----------------- 439 (547)
T ss_pred HHhhheEEEecChhHHHH-------hhccc---c---Cc----hHHHHHHHHHHHcCCchhhh-----------------
Confidence 455689999999988753 46666 1 01 11223444555555432000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.|+ |. . .-..+|+|++|+++|++
T Consensus 440 ---------------------------------------~~~---~~------------~---~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 440 ---------------------------------------LED---GR------------I---SNLKLSKGQKKRLALLL 462 (547)
T ss_pred ---------------------------------------ccc---cC------------C---CCCCCCHHHHHHHHHHH
Confidence 000 00 0 01258999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|||+.+-+..++. .+.+.+.+..+ .++|+++.+|..+. .+...++.+++
T Consensus 463 al~~------~~~ililDE~ts~LD~~~~~-----------~i~~~l~~~~~~~~~tvi~itH~~~~--~~~~d~i~~l~ 523 (547)
T PRK10522 463 ALAE------ERDILLLDEWAADQDPHFRR-----------EFYQVLLPLLQEMGKTIFAISHDDHY--FIHADRLLEMR 523 (547)
T ss_pred HHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEEechHH--HHhCCEEEEEE
Confidence 9999 99999999998876655543 44444543332 47899999998654 33455665553
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-17 Score=184.46 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=123.7
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|.++||++.|+++.+|+++||+| ||+|||||||||||++|+|. +++|+|. +.+.
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~---~~~~------------ 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG---LAKG------------ 374 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---ECCC------------
Confidence 34799999999999889999999999 99999999999999999664 5677776 4321
Q ss_pred cccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 149 GRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 149 ~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..+||++|+. .+.+.. ++.+++.. .. .......+..++..+|+.+
T Consensus 375 ---~~igy~~Q~~~~~l~~~~------~~~~~~~~--~~----~~~~~~~~~~~L~~~~l~~------------------ 421 (638)
T PRK10636 375 ---IKLGYFAQHQLEFLRADE------SPLQHLAR--LA----PQELEQKLRDYLGGFGFQG------------------ 421 (638)
T ss_pred ---EEEEEecCcchhhCCccc------hHHHHHHH--hC----chhhHHHHHHHHHHcCCCh------------------
Confidence 1589999964 233333 44433210 00 0011122333333333311
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
...+..+..+|+|+++++.|
T Consensus 422 ------------------------------------------------------------~~~~~~~~~LSgGekqRl~L 441 (638)
T PRK10636 422 ------------------------------------------------------------DKVTEETRRFSGGEKARLVL 441 (638)
T ss_pred ------------------------------------------------------------hHhcCchhhCCHHHHHHHHH
Confidence 01234566799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.|.+..... .+.++|.+. +.++++++|+.++.. +++.++.++
T Consensus 442 a~~l~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~L~~~---~gtvi~vSHd~~~~~-~~~d~i~~l 500 (638)
T PRK10636 442 ALIVWQ------RPNLLLLDEPTNHLDLDMRQ-----------ALTEALIDF---EGALVVVSHDRHLLR-STTDDLYLV 500 (638)
T ss_pred HHHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHc---CCeEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999998887766553 445555544 248899999987543 356666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 501 ~ 501 (638)
T PRK10636 501 H 501 (638)
T ss_pred E
Confidence 4
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-17 Score=163.33 Aligned_cols=159 Identities=15% Similarity=0.065 Sum_probs=108.3
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCccccee
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIG 180 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~ 180 (541)
+|+|||||||||||++|++ .+.+|+|. ++|. .++|++|+....+.. ||.|++.
T Consensus 29 ~i~G~NGsGKSTLlk~L~G~~~p~~G~i~---~~g~----------------~i~~~~q~~~~~~~~------tv~e~l~ 83 (246)
T cd03237 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIE---IELD----------------TVSYKPQYIKADYEG------TVRDLLS 83 (246)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCCeEE---ECCc----------------eEEEecccccCCCCC------CHHHHHH
Confidence 9999999999999999955 46677777 5543 479999988777777 8988875
Q ss_pred ccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhc
Q psy91 181 FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKG 260 (541)
Q Consensus 181 ~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g 260 (541)
+...... . ....+.++++.+|+..
T Consensus 84 ~~~~~~~--~--~~~~~~~~l~~l~l~~---------------------------------------------------- 107 (246)
T cd03237 84 SITKDFY--T--HPYFKTEIAKPLQIEQ---------------------------------------------------- 107 (246)
T ss_pred HHhhhcc--c--cHHHHHHHHHHcCCHH----------------------------------------------------
Confidence 4310000 0 0011222333332211
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhh
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW 340 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~ 340 (541)
..++.+..+|+|++|++.|+++++. +++++|+|||..+.+..+..
T Consensus 108 ---------------------------~~~~~~~~LSgGe~qrv~iaraL~~------~p~llllDEPt~~LD~~~~~-- 152 (246)
T cd03237 108 ---------------------------ILDREVPELSGGELQRVAIAACLSK------DADIYLLDEPSAYLDVEQRL-- 152 (246)
T ss_pred ---------------------------HhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH--
Confidence 1233456799999999999999998 99999999997776655443
Q ss_pred hhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 341 RACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 341 ~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.+.+.|.+..+ .++++++.+|+++... .++.++.++.
T Consensus 153 ---------~l~~~l~~~~~~~~~tiiivsHd~~~~~-~~~d~i~~l~ 190 (246)
T cd03237 153 ---------MASKVIRRFAENNEKTAFVVEHDIIMID-YLADRLIVFE 190 (246)
T ss_pred ---------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEc
Confidence 55666666544 4788999999977443 3566666663
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-17 Score=197.87 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=141.1
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.|+||+++|+. ..+|+||||+| ||+|+||||||||+++|++. +.+|+|+ ++|. ++......
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~---IdG~----di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQ---IDGV----SWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEE---ECCE----EcccCCHH
Confidence 46999999999964 67999999999 99999999999999999332 3689999 8887 33333344
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+|+ | |+++|+.... . ...+.+..+++.+|+...-.+ .-.|++.
T Consensus 1289 ~lR~~is~IpQdp~LF~---G----TIR~NLdp~~---~----~tdeei~~aL~~~~L~~~i~~----lp~GLdt----- 1345 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFS---G----TFRKNLDPYE---Q----WSDEEIWKVAEEVGLKSVIEQ----FPDKLDF----- 1345 (1490)
T ss_pred HHHhceEEEeCCCccCc---c----CHHHHhCccc---C----CCHHHHHHHHHHCCCHHHHHh----Ccccccc-----
Confidence 56678999999999984 3 8999996431 1 123456677888887542110 0001110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+|+. -..+|+|++|+++|+|
T Consensus 1346 --------------------------------------~v~e~---------------------G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1346 --------------------------------------VLVDG---------------------GYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred --------------------------------------ccccC---------------------CCcCCHHHHHHHHHHH
Confidence 01111 1348999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+.... ..+.+.|.+.. .++|+++..|.++... ...++.+++
T Consensus 1367 ALLr------~~~ILlLDEaTS~lD~~Te-----------~~I~~~L~~~~-~~~TvI~IaHRl~ti~--~~DrIlvL~ 1425 (1490)
T TIGR01271 1367 SILS------KAKILLLDEPSAHLDPVTL-----------QIIRKTLKQSF-SNCTVILSEHRVEALL--ECQQFLVIE 1425 (1490)
T ss_pred HHhC------CCCEEEEeCCcccCCHHHH-----------HHHHHHHHHHc-CCCEEEEEecCHHHHH--hCCEEEEEE
Confidence 9999 9999999999776443333 25555555443 3688888898875443 355666664
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-17 Score=162.42 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=122.9
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccc
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
...+.|.++++++. .+.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~---i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK---HSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECC-----------
Confidence 44567999999885 467999999999 99999999999999999664 4567666 444
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++|++|+..+++ . |+.+|+.++.... . ..+..++..+++...
T Consensus 99 ------~i~yv~q~~~l~~-~------tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~----------------- 141 (282)
T cd03291 99 ------RISFSSQFSWIMP-G------TIKENIIFGVSYD---E----YRYKSVVKACQLEED----------------- 141 (282)
T ss_pred ------EEEEEeCcccccc-c------CHHHHhhcccccC---H----HHHHHHHHHhCCHHH-----------------
Confidence 2799999987664 5 8999998752110 0 111222333332110
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc-ccCCCCCCCCCCCCCCcceE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~-~~~~~~~~~~ls~g~~q~v~ 305 (541)
++.+... +...+..+..+|+|++|++.
T Consensus 142 ----------------------------------------------------l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 142 ----------------------------------------------------ITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred ----------------------------------------------------HHhccccccceecCCCCcCCHHHHHHHH
Confidence 0000000 00011234578999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..... .+.+.+......+.++++.+|+.+... ...++.+
T Consensus 170 lAraL~~------~p~iLiLDEPt~gLD~~~~~-----------~l~~~ll~~~~~~~tIiiisH~~~~~~--~~d~i~~ 230 (282)
T cd03291 170 LARAVYK------DADLYLLDSPFGYLDVFTEK-----------EIFESCVCKLMANKTRILVTSKMEHLK--KADKILI 230 (282)
T ss_pred HHHHHhc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHhhCCCEEEEEeCChHHHH--hCCEEEE
Confidence 9999998 99999999998876654432 333322111123678889999887643 4556655
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 231 l 231 (282)
T cd03291 231 L 231 (282)
T ss_pred E
Confidence 5
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-17 Score=168.74 Aligned_cols=195 Identities=20% Similarity=0.269 Sum_probs=130.5
Q ss_pred CCCCCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc
Q psy91 74 ATDRDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 74 ~~~~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
+...+.+.++++++.-+ .+++|++|||++ |||||||||||||.|+|.| .+.+|.|+ ++|- ++.
T Consensus 329 P~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR---LDga----~l~ 401 (580)
T COG4618 329 PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR---LDGA----DLR 401 (580)
T ss_pred CCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE---ecch----hhh
Confidence 44456788888887654 357999999999 9999999999999999954 67889999 8888 555
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCccccee-ccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIG-FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~-~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.+..+.+-+++||++|+..||+ | |+.||+. |. .....+... ++-..-|.. +.+..+
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~---G----TIaeNIaRf~---~~~d~~kIi----eAA~lAgvH--------elIl~l- 458 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFD---G----TIAENIARFG---EEADPEKVI----EAARLAGVH--------ELILRL- 458 (580)
T ss_pred cCCHHHhccccCcCcccceecC---C----cHHHHHHhcc---ccCCHHHHH----HHHHHcChH--------HHHHhC-
Confidence 5555667789999999999984 4 7999986 33 111111111 111111111 111111
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
++ ||.+ .+|+.| ..+|+||+|
T Consensus 459 -P~------------------GYdT-------------------~iG~~G---------------------~~LSgGQRQ 479 (580)
T COG4618 459 -PQ------------------GYDT-------------------RIGEGG---------------------ATLSGGQRQ 479 (580)
T ss_pred -cC------------------CccC-------------------ccCCCC---------------------CCCCchHHH
Confidence 11 1110 122222 358999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
|+.++++++- +|.|.|+|||..-.+..-+. .+.+-+.+..+.+.++++.+|...+
T Consensus 480 RIaLARAlYG------~P~lvVLDEPNsNLD~~GE~-----------AL~~Ai~~~k~rG~~vvviaHRPs~ 534 (580)
T COG4618 480 RIALARALYG------DPFLVVLDEPNSNLDSEGEA-----------ALAAAILAAKARGGTVVVIAHRPSA 534 (580)
T ss_pred HHHHHHHHcC------CCcEEEecCCCCCcchhHHH-----------HHHHHHHHHHHcCCEEEEEecCHHH
Confidence 9999999999 99999999995544333332 4555566666778888888877554
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-17 Score=146.69 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=119.1
Q ss_pred ceeeeccccccc-----c--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 79 YIGFATLPEQVH-----R--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 79 ~i~~~~l~~~~~-----~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.++|++++|- + -++|+++||++ ++-|||||||||||++| ...+++|+|++.+. |. ++++-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~-g~--~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE-GE--WVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC-cc--hhhhh
Confidence 467778888873 2 25999999999 88999999999999999 55789999994332 32 12221
Q ss_pred c-c---ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 144 G-T---KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 144 ~-~---~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
. . -...+++.+|||.|.-...|.. ...+.++-+.+..+++.+....++..++..+++..
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV------~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe----------- 143 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRV------SALDVVAEPLLARGVPREVARAKAADLLTRLNLPE----------- 143 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCc------chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-----------
Confidence 1 1 1234566799999988888877 66776666555556666667777766666665532
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
.+..-.+...|||
T Consensus 144 -------------------------------------------------------------------rLW~LaPaTFSGG 156 (235)
T COG4778 144 -------------------------------------------------------------------RLWSLAPATFSGG 156 (235)
T ss_pred -------------------------------------------------------------------HHhcCCCcccCCc
Confidence 1223346678999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCC-CCCccch
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGF-GDSINSE 337 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~-Gd~~~~~ 337 (541)
++|++.|++..+. +..++++|||+. .|+.|..
T Consensus 157 EqQRVNIaRgfiv------d~pILLLDEPTasLDa~Nr~ 189 (235)
T COG4778 157 EQQRVNIARGFIV------DYPILLLDEPTASLDATNRA 189 (235)
T ss_pred hheehhhhhhhhc------cCceEEecCCcccccccchH
Confidence 9999999999887 899999999955 5555544
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-17 Score=164.02 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=122.6
Q ss_pred eccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecc--------cCCccceeccccc
Q psy91 83 ATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPN--------VNGSNTVIEVAGT 145 (541)
Q Consensus 83 ~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~--------~~G~~~~~~~~~~ 145 (541)
.+|+++|+.+ .+|+++++ + +|+|||||||||||++|+| .++.|+|+..+ +.|..+. ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~----~~ 78 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ----NY 78 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh----hh
Confidence 3678899765 59999995 5 9999999999999999944 56788884110 3344211 11
Q ss_pred ccccc--cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 146 KVRGR--QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 146 ~~~~~--~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+ ...++|++|...+++ . ++.+++.+. + ........+..+++.+|+..
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~-~------~~~~~i~~~-l----~~~~~~~~~~~~l~~~gl~~--------------- 131 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIP-K------AVKGKVGEL-L----KKKDERGKLDELVDQLELRH--------------- 131 (255)
T ss_pred hHHhhhcccceeeecchhccCc-h------HHHHHHHHH-h----chhHHHHHHHHHHHHcCCch---------------
Confidence 01111 124688888776665 2 344444332 1 11122234455566555432
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
..+..+..+|+|++|+
T Consensus 132 ----------------------------------------------------------------~~~~~~~~LS~G~~qr 147 (255)
T cd03236 132 ----------------------------------------------------------------VLDRNIDQLSGGELQR 147 (255)
T ss_pred ----------------------------------------------------------------hhcCChhhCCHHHHHH
Confidence 1112344689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.+.+.+..+.++++++.+|+.+... .+..++
T Consensus 148 v~laral~~------~p~illlDEPts~LD~~~~~-----------~l~~~l~~l~~~~~tIIiiSHd~~~~~-~~ad~i 209 (255)
T cd03236 148 VAIAAALAR------DADFYFFDEPSSYLDIKQRL-----------NAARLIRELAEDDNYVLVVEHDLAVLD-YLSDYI 209 (255)
T ss_pred HHHHHHHHh------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEE
Confidence 999999988 99999999998886655443 455666665555788999999977543 345555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 210 ~~l~ 213 (255)
T cd03236 210 HCLY 213 (255)
T ss_pred EEEC
Confidence 5553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-17 Score=158.76 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=116.6
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccc--ccccccCCCcccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP--SLIGSLFQTDRDY 178 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~--~lig~~~qtv~e~ 178 (541)
+|+||||||||||+++|++ .+.+|+|. ++|+.+ . ..++.++|++|+..+++ .+ |+.+|
T Consensus 10 ~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~-----~~~~~i~~v~q~~~~~~~~~~------tv~~~ 71 (223)
T TIGR03771 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVK---VAGASP----G-----KGWRHIGYVPQRHEFAWDFPI------SVAHT 71 (223)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCccc----h-----HhhCcEEEecccccccCCCCc------cHHHH
Confidence 9999999999999999965 56789999 888721 1 12356999999987643 35 88888
Q ss_pred eecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhh
Q psy91 179 IGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHR 254 (541)
Q Consensus 179 l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~ 254 (541)
+.++.... . .........+..+++.+|+..
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------------------------------- 105 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE---------------------------------------------- 105 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCch----------------------------------------------
Confidence 87652110 0 011122234555566555532
Q ss_pred hhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 255 KSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 255 ~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.+..+..+|+|++|++.|+++++. +++++|+|||..|-+.
T Consensus 106 ---------------------------------~~~~~~~~LS~G~~qrv~laral~~------~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 106 ---------------------------------LADRPVGELSGGQRQRVLVARALAT------RPSVLLLDEPFTGLDM 146 (223)
T ss_pred ---------------------------------hhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCH
Confidence 1122345689999999999999999 9999999999887665
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 335 NSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 335 ~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+.. .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 147 ~~~~-----------~l~~~l~~~~~~~~tvii~sH~~~~~~-~~~d~i~~l 186 (223)
T TIGR03771 147 PTQE-----------LLTELFIELAGAGTAILMTTHDLAQAM-ATCDRVVLL 186 (223)
T ss_pred HHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 5543 666667666555889999999987432 344555555
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-16 Score=143.67 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=123.5
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccce--ecccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTV--IEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~--~~~~~~~ 146 (541)
.|.+.+.++++.|+...-.++|||.+ +|+|+|||||||||+||.+ .|+.|.|.|..-.|+... ......+
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 46789999999999999999999998 9999999999999999954 467888886554454211 1111111
Q ss_pred cccccccEEEEeCCCc--cccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 147 VRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..||||.|++. |-... +...|+.--.+..+. .-..+++.+..+++.+.+.-
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~V------SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~--------------- 142 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQV------SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL--------------- 142 (258)
T ss_pred HHHhhhccceeecCccccceeee------ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCc---------------
Confidence 1223446899998653 22111 222333211000000 00112222333333332210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.-.+..+...|+|++|+
T Consensus 143 ---------------------------------------------------------------~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 143 ---------------------------------------------------------------DRIDDLPRTFSGGMQQR 159 (258)
T ss_pred ---------------------------------------------------------------ccccCcccccchHHHHH
Confidence 01234466789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
++|++.++. .|+|.+.|||+.|.++.... ++...+..... .+-.++|.+|++-+.
T Consensus 160 LQiARnLVt------~PrLvfMDEPTGGLDVSVQA-----------RLLDllrgLv~~l~la~viVTHDl~Va 215 (258)
T COG4107 160 LQIARNLVT------RPRLVFMDEPTGGLDVSVQA-----------RLLDLLRGLVRELGLAVVIVTHDLAVA 215 (258)
T ss_pred HHHHHHhcc------CCceEEecCCCCCcchhhHH-----------HHHHHHHHHHHhcCceEEEEechhHHH
Confidence 999999999 99999999998887765543 45555555433 356677888776543
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-16 Score=144.72 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=127.4
Q ss_pred Cceeeeccccccccc---------ceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHRK---------SVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~---------~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~ 140 (541)
+.++++|+++.|..+ .+++.|||++ ||||.||||||||.++|+ ..|++|+|. ++|+
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il---~n~~---- 75 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL---INDH---- 75 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEE---ECCc----
Confidence 456788888888543 3889999998 999999999999999994 478899999 8888
Q ss_pred cccccccccccccEEEEeCCCc--cccccccccCCCcccceecc-ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFA-TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~-~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.+.......+.+.+-++|||++ +.|.+ .+..-+..+ ++...+......+++-+.|..+||-.
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl------~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P--------- 140 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRL------RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP--------- 140 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhh------hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc---------
Confidence 3333334456678999999974 55666 555555544 22234445556667777788877732
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
-...-++.-++
T Consensus 141 ---------------------------------------------------------------------dhan~~~~~la 151 (267)
T COG4167 141 ---------------------------------------------------------------------DHANYYPHMLA 151 (267)
T ss_pred ---------------------------------------------------------------------cccccchhhcC
Confidence 01112344567
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeecc
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEK 369 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~ 369 (541)
.+++|+|+++++++. +|+++|.|+. |..|..-. .|+.+.+-+.+ +.+.+.+.+.
T Consensus 152 ~~QKQRVaLARALIL------~P~iIIaDeAl~~LD~smr------------sQl~NL~LeLQek~GiSyiYV~ 207 (267)
T COG4167 152 PGQKQRVALARALIL------RPKIIIADEALASLDMSMR------------SQLINLMLELQEKQGISYIYVT 207 (267)
T ss_pred chhHHHHHHHHHHhc------CCcEEEehhhhhhccHHHH------------HHHHHHHHHHHHHhCceEEEEe
Confidence 899999999999998 9999999998 66554333 25555544443 3455555444
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-16 Score=152.48 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=120.8
Q ss_pred Cceeeecccccccc---------cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHR---------KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---------~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~ 140 (541)
..++++||++.|.. ..+++||||+| +|||+||||||||-|+| +..|+.|+|+ +.|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~---f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL---FEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE---EcCcchhh
Confidence 45778888888853 26899999999 99999999999999999 6678899999 88882100
Q ss_pred cccccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
+ + +.+..+++.++|+.+|+..
T Consensus 80 --------------------------~------~---------------~~~~~~~v~elL~~Vgl~~------------ 100 (268)
T COG4608 80 --------------------------L------S---------------KEERRERVLELLEKVGLPE------------ 100 (268)
T ss_pred --------------------------c------c---------------hhHHHHHHHHHHHHhCCCH------------
Confidence 1 1 3445567888888888643
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
.+..+++..+||||
T Consensus 101 ------------------------------------------------------------------~~~~ryPhelSGGQ 114 (268)
T COG4608 101 ------------------------------------------------------------------EFLYRYPHELSGGQ 114 (268)
T ss_pred ------------------------------------------------------------------HHhhcCCcccCchh
Confidence 02345678899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l 379 (541)
.||+.|+++++. +|+++|+|||....++... .|+.++|.+.++. +-+.++.+|++.... .+
T Consensus 115 rQRi~IARALal------~P~liV~DEpvSaLDvSiq-----------aqIlnLL~dlq~~~~lt~lFIsHDL~vv~-~i 176 (268)
T COG4608 115 RQRIGIARALAL------NPKLIVADEPVSALDVSVQ-----------AQILNLLKDLQEELGLTYLFISHDLSVVR-YI 176 (268)
T ss_pred hhhHHHHHHHhh------CCcEEEecCchhhcchhHH-----------HHHHHHHHHHHHHhCCeEEEEEEEHHhhh-hh
Confidence 999999999998 9999999999665444333 3777777777654 778888898877543 34
Q ss_pred cceeEE
Q psy91 380 KLRLTV 385 (541)
Q Consensus 380 ~~rvnv 385 (541)
+.++-|
T Consensus 177 sdri~V 182 (268)
T COG4608 177 SDRIAV 182 (268)
T ss_pred cccEEE
Confidence 445443
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-17 Score=157.14 Aligned_cols=184 Identities=19% Similarity=0.271 Sum_probs=129.1
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccccccEEEEeC-CCcc
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG-STVL 163 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q-~~~l 163 (541)
.+++||||+| +++|||||||||+|++|. ..|++|.|. ++|.+- . ...+..-+.+++|+. -..+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~---V~G~~P---f--~~~~~~~~~~~~v~gqk~ql 109 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR---VNGKDP---F--RRREEYLRSIGLVMGQKLQL 109 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE---ecCcCc---c--hhHHHHHHHHHHHhhhhhee
Confidence 4899999999 999999999999999994 467889999 888721 1 111223345666653 3334
Q ss_pred ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCe
Q psy91 164 TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDI 243 (541)
Q Consensus 164 ~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~v 243 (541)
.-.+ .+.+.+...+.-+.++..+-.++.+.+.+.+++.+.
T Consensus 110 ~Wdl------p~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~---------------------------------- 149 (325)
T COG4586 110 WWDL------PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF---------------------------------- 149 (325)
T ss_pred eeec------hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh----------------------------------
Confidence 3334 344444433333445556666666666666666541
Q ss_pred eEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEE
Q psy91 244 GFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLT 323 (541)
Q Consensus 244 G~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~ 323 (541)
...+...+|-|++.++.++.++.. +|+++
T Consensus 150 ---------------------------------------------lk~~vr~LSlGqRmraeLaaaLLh------~p~VL 178 (325)
T COG4586 150 ---------------------------------------------LKWPVRKLSLGQRMRAELAAALLH------PPKVL 178 (325)
T ss_pred ---------------------------------------------hhhhhhhccchHHHHHHHHHHhcC------CCcEE
Confidence 112344578899999999999999 99999
Q ss_pred EEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 324 VVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 324 I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++|||+.|.+++... .++++++++++. +-|+...+|.++=. ..++.+|..|+
T Consensus 179 fLDEpTvgLDV~aq~-----------~ir~Flke~n~~~~aTVllTTH~~~di-~~lc~rv~~I~ 231 (325)
T COG4586 179 FLDEPTVGLDVNAQA-----------NIREFLKEYNEERQATVLLTTHIFDDI-ATLCDRVLLID 231 (325)
T ss_pred EecCCccCcchhHHH-----------HHHHHHHHHHHhhCceEEEEecchhhH-HHhhhheEEee
Confidence 999999999988765 788889888765 55777888887622 34777888875
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-16 Score=177.08 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=118.4
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.+++|++.|++ +.+|+++||+| +|+|||||||||||++|+|. +.+|+|. +.+.
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~---~~~~------------ 571 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF---RSAK------------ 571 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE---ECCc------------
Confidence 57999999999964 56999999999 99999999999999999654 5667776 4321
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+||++|+.. ..+ ++.++..+... ..... ...+.+..++..+|+.
T Consensus 572 ---~~igyv~Q~~~--~~l------~~~~~~~~~~~-~~~~~-~~~~~i~~~L~~~gl~--------------------- 617 (718)
T PLN03073 572 ---VRMAVFSQHHV--DGL------DLSSNPLLYMM-RCFPG-VPEQKLRAHLGSFGVT--------------------- 617 (718)
T ss_pred ---eeEEEEecccc--ccC------CcchhHHHHHH-HhcCC-CCHHHHHHHHHHCCCC---------------------
Confidence 25899999742 233 34333211100 00000 0011222333333332
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
....++.+..+|+|++|++.|++
T Consensus 618 ---------------------------------------------------------~~~~~~~~~~LSgGqkqRvaLAr 640 (718)
T PLN03073 618 ---------------------------------------------------------GNLALQPMYTLSGGQKSRVAFAK 640 (718)
T ss_pred ---------------------------------------------------------hHHhcCCccccCHHHHHHHHHHH
Confidence 11223456779999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||+.|.+..+.. .+.+.|.+. +.++++.+|+.+... .++.++.++
T Consensus 641 aL~~------~p~lLLLDEPT~~LD~~s~~-----------~l~~~L~~~---~gtvIivSHd~~~i~-~~~drv~~l 697 (718)
T PLN03073 641 ITFK------KPHILLLDEPSNHLDLDAVE-----------ALIQGLVLF---QGGVLMVSHDEHLIS-GSVDELWVV 697 (718)
T ss_pred HHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHc---CCEEEEEECCHHHHH-HhCCEEEEE
Confidence 9998 99999999998887765442 333444332 238899999987554 355566655
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-16 Score=170.16 Aligned_cols=203 Identities=18% Similarity=0.167 Sum_probs=129.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.+.+++++|+++.+|+++|+++ ||||+|||||||||++|+|. +++|+|. ..+
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~---~~~--------------- 64 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT---RPK--------------- 64 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe---ecC---------------
Confidence 578999999999999999999999 99999999999999999664 4455554 222
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC-CccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES-GLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~-g~~ks~l~~~l~gl~~~~~~~i 229 (541)
...++|+.|+..+.+.. ||.+.+..+... -.+..+..+.+...++-. ...-..+...+..++.+.
T Consensus 65 ~~~v~~l~Q~~~~~~~~------tv~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 130 (530)
T COG0488 65 GLRVGYLSQEPPLDPEK------TVLDYVIEGFGE----LRELLAELEEAYALLADPDDELLAELEALLEELDGWT---- 130 (530)
T ss_pred CceEEEeCCCCCcCCCc------cHHHHHHhhhHH----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccc----
Confidence 13589999999999888 999888766211 111111111221111111 000011111111111000
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
....-.+.+..|..... +.....+|||++.++.++++
T Consensus 131 -----------------------------------------~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~a 167 (530)
T COG0488 131 -----------------------------------------LEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARA 167 (530)
T ss_pred -----------------------------------------hHHHHHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHH
Confidence 00011234444444432 66788999999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++. +|.++++|||+...++..-. -+++||... .+ ++++++|+-.+-.
T Consensus 168 L~~------~pDlLLLDEPTNHLD~~~i~-----------WLe~~L~~~--~g-tviiVSHDR~FLd 214 (530)
T COG0488 168 LLE------EPDLLLLDEPTNHLDLESIE-----------WLEDYLKRY--PG-TVIVVSHDRYFLD 214 (530)
T ss_pred Hhc------CCCEEEEcCCCcccCHHHHH-----------HHHHHHHhC--CC-cEEEEeCCHHHHH
Confidence 999 99999999997655544432 334455422 23 8999999977655
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-16 Score=179.88 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=125.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-----CCCCCCeeecccCCcccee-ccc-
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-----SDLYGDRKVPNVNGSNTVI-EVA- 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-----~~~~G~i~~~~~~G~~~~~-~~~- 143 (541)
...|.++|++++|+++.+|+++||+| ||||||||||||||++|++ .+..|+|. +.++.... ...
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~---~~~Q~~~g~~~t~ 251 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL---HVEQEVVGDDTTA 251 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE---EEeccCCCCCCCH
Confidence 34699999999999889999999999 9999999999999999975 33445554 21110000 000
Q ss_pred -----c---cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCc--cchh
Q psy91 144 -----G---TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGL--GKST 213 (541)
Q Consensus 144 -----~---~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~--~ks~ 213 (541)
. .........+++++|...+... ++.++.... .....+..+..+++..+++.+++.+. +...
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-------~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFE-------TETGKGKGA-NKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-------ccccccccc-cccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0000011123334443222110 111111111 11111223334445555555554331 0111
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
+ ..++..|.......++.+
T Consensus 324 ~-------------------------------------------------------------~~~L~~lgl~~~~~~~~~ 342 (718)
T PLN03073 324 A-------------------------------------------------------------ASILAGLSFTPEMQVKAT 342 (718)
T ss_pred H-------------------------------------------------------------HHHHHHCCCChHHHhCch
Confidence 1 123333333221234567
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
..+|+|+++++.|+++++. +|+++|+|||+.+.+..... .+.++|.+. +.++++.+|+.+
T Consensus 343 ~~LSgG~k~rv~LA~aL~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~L~~~---~~tviivsHd~~ 402 (718)
T PLN03073 343 KTFSGGWRMRIALARALFI------EPDLLLLDEPTNHLDLHAVL-----------WLETYLLKW---PKTFIVVSHARE 402 (718)
T ss_pred hhCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHc---CCEEEEEECCHH
Confidence 7899999999999999998 99999999997776655443 444555443 568999999977
Q ss_pred hhhhcccceeEEEc
Q psy91 374 IEERGVKLRLTVVD 387 (541)
Q Consensus 374 i~~~~l~~rvnvIp 387 (541)
... .++.++.++.
T Consensus 403 ~l~-~~~d~i~~l~ 415 (718)
T PLN03073 403 FLN-TVVTDILHLH 415 (718)
T ss_pred HHH-HhCCEEEEEE
Confidence 543 3555555554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-16 Score=174.53 Aligned_cols=213 Identities=13% Similarity=0.083 Sum_probs=120.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+|. +++|+|. +.|..
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~---~~~~~------------- 66 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII---YEQDL------------- 66 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE---eCCCC-------------
Confidence 478999999999999999999999 99999999999999999664 5678877 55430
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhh---hhhccccccCCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLV---NSLFLSDLYGDR 227 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~---~~l~gl~~~~~~ 227 (541)
.+++++|...... .+ ++.+++..+. . ... ........+...++... ....+. .....+.....
T Consensus 67 --~~~~l~q~~~~~~--~~----~v~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~- 132 (635)
T PRK11147 67 --IVARLQQDPPRNV--EG----TVYDFVAEGI-E-EQA--EYLKRYHDISHLVETDP-SEKNLNELAKLQEQLDHHNL- 132 (635)
T ss_pred --EEEEeccCCCCCC--CC----CHHHHHHHhh-H-HHH--HHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhcCc-
Confidence 2456666432211 22 3333222110 0 000 00000000001111100 000000 00000000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ .. ... -..++..|... .++.+..+|+|+++++.|+
T Consensus 133 -----------------~-----~~-~~~------------------~~~~l~~lgl~---~~~~~~~LSgGekqRv~LA 168 (635)
T PRK11147 133 -----------------W-----QL-ENR------------------INEVLAQLGLD---PDAALSSLSGGWLRKAALG 168 (635)
T ss_pred -----------------c-----cH-HHH------------------HHHHHHhCCCC---CCCchhhcCHHHHHHHHHH
Confidence 0 00 000 01233333322 2567788999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||+.+.+..... .+.++|.+. ..++++++|+.++.. .++.++.++
T Consensus 169 raL~~------~P~lLLLDEPt~~LD~~~~~-----------~L~~~L~~~---~~tvlivsHd~~~l~-~~~d~i~~L 226 (635)
T PRK11147 169 RALVS------NPDVLLLDEPTNHLDIETIE-----------WLEGFLKTF---QGSIIFISHDRSFIR-NMATRIVDL 226 (635)
T ss_pred HHHhc------CCCEEEEcCCCCccCHHHHH-----------HHHHHHHhC---CCEEEEEeCCHHHHH-HhcCeEEEE
Confidence 99998 99999999998887665543 455555544 248889999977654 344455554
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-16 Score=140.44 Aligned_cols=50 Identities=28% Similarity=0.298 Sum_probs=43.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
+.++++++.|++..+|+++||++ +|+||||||||||+++|++ .+.+|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 46789999998888999999999 9999999999999999955 45677777
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-15 Score=184.60 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=127.9
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++|+++.|+. +++|+|+||+| ||+||||||||||+++|++...+ ..|...
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-------~~G~i~---------- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-------AETSSV---------- 675 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-------cCCCEE----------
Confidence 36899999999974 57999999999 99999999999999999775443 334311
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++||+|++.++. - |++||+.|+. + . ..++...+++.+++..- +..+ + ++.
T Consensus 676 ~~~~~Iayv~Q~p~Lf~-g------TIreNI~fg~-~--~----~~e~~~~vl~~~~L~~d--------i~~L--p-~Gd 730 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFN-A------TVRENILFGS-D--F----ESERYWRAIDVTALQHD--------LDLL--P-GRD 730 (1495)
T ss_pred EecCcEEEEcCcccccc-c------cHHHHhhcCC-c--c----CHHHHHHHHHHhCCHHH--------HHhC--C-CCC
Confidence 23457999999999884 3 8999999983 2 1 12345556666655431 1101 0 000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
. -.+|+.| ..+||||+||++|+|
T Consensus 731 ---------------------------------~---T~IGe~G---------------------~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 731 ---------------------------------L---TEIGERG---------------------VNISGGQKQRVSMAR 753 (1495)
T ss_pred ---------------------------------C---ceecCCC---------------------cccCHHHHHHHHHHH
Confidence 0 0123333 248999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh-hhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~-~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|+|..+-+..+.. ++ .+.+.. ...++|+++.+|.+.... ...++.+++
T Consensus 754 Aly~------~~~IlLLDEptSaLD~~t~~-----------~I~~~~l~~-~l~~kT~IlvTH~~~~l~--~aD~Ii~L~ 813 (1495)
T PLN03232 754 AVYS------NSDIYIFDDPLSALDAHVAH-----------QVFDSCMKD-ELKGKTRVLVTNQLHFLP--LMDRIILVS 813 (1495)
T ss_pred HHhc------CCCEEEEcCCccccCHHHHH-----------HHHHHHhhh-hhcCCEEEEEECChhhHH--hCCEEEEEe
Confidence 9999 99999999996654443332 22 222322 225789999999875432 344555553
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-15 Score=142.50 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=59.6
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCee--eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVK--LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~--~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
.+..+|+|++|++.|+++++. + ++++|+|||..|-+..... .+.+++.+..+.++++++.+
T Consensus 84 ~~~~LSgGq~qrl~laral~~------~~~p~llLlDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFS------EPPGTLFILDEPSTGLHQQDIN-----------QLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhh------CCCCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEe
Confidence 455789999999999999988 8 9999999998876655443 66677766655688999999
Q ss_pred ccchhhhhcccceeEEE
Q psy91 370 KSMDIEERGVKLRLTVV 386 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvI 386 (541)
|+.+.. ....++.++
T Consensus 147 H~~~~~--~~~d~i~~l 161 (176)
T cd03238 147 HNLDVL--SSADWIIDF 161 (176)
T ss_pred CCHHHH--HhCCEEEEE
Confidence 998864 346666666
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-16 Score=170.79 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=123.6
Q ss_pred ccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecc--------cCCccceecccccc
Q psy91 84 TLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPN--------VNGSNTVIEVAGTK 146 (541)
Q Consensus 84 ~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~--------~~G~~~~~~~~~~~ 146 (541)
+++++||.. .+|++++ .+ ||+|||||||||||++|+| .|+.|+|.... +.|+.+.... ..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~--~~ 154 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF--KK 154 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH--HH
Confidence 378899874 5999999 66 9999999999999999965 46778874100 3454221000 00
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.......+++++|.....|.+ +.-||.+++.+. .....+.++++.+|+..
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~---~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~------------------ 204 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKV---FKGKVRELLKKV---------DERGKLDEVVERLGLEN------------------ 204 (590)
T ss_pred HhccCcceeecccchhhhhhh---hcchHHHHHHhh---------hHHHHHHHHHHHcCCch------------------
Confidence 011112345556654443322 111566655421 12234455555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|+++|
T Consensus 205 -------------------------------------------------------------~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 205 -------------------------------------------------------------ILDRDISELSGGELQRVAI 223 (590)
T ss_pred -------------------------------------------------------------hhcCChhhCCHHHHHHHHH
Confidence 2344566799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.+.+..... ++.+++.+..+ +.++++.+|+++... .+..++.++
T Consensus 224 a~al~~------~p~lllLDEPts~LD~~~~~-----------~l~~~i~~l~~-g~tvIivsHd~~~l~-~~~D~v~vl 284 (590)
T PRK13409 224 AAALLR------DADFYFFDEPTSYLDIRQRL-----------NVARLIRELAE-GKYVLVVEHDLAVLD-YLADNVHIA 284 (590)
T ss_pred HHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999997776655443 66777777766 889999999988654 456666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 285 ~ 285 (590)
T PRK13409 285 Y 285 (590)
T ss_pred e
Confidence 3
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-16 Score=143.53 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=95.8
Q ss_pred eecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccccccEEEEeCCCccccc
Q psy91 95 KKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPS 166 (541)
Q Consensus 95 L~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~ 166 (541)
|++||++| +|+|||||||||||++|++. +..|.|. ++|. .+........+..++|++|+..+++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~---~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~ 73 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSIL---INGK----DISDIDIEELRRRIGYVPQDPQLFPG 73 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEE---ETTE----EGTTSHHHHHHHTEEEEESSHCHHTT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccc---cccc----cccccccccccccccccccccccccc
Confidence 68999999 99999999999999999654 4679998 7877 33332333456789999999999998
Q ss_pred cccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEe
Q psy91 167 LIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFA 246 (541)
Q Consensus 167 lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~ 246 (541)
+ |+.++ ....++..++..+++.+..+.
T Consensus 74 ~------tv~~~-------------~~~~~~~~~l~~l~~~~~~~~---------------------------------- 100 (137)
T PF00005_consen 74 L------TVREN-------------ESDERIEEVLKKLGLEDLLDR---------------------------------- 100 (137)
T ss_dssp S------BHHHH-------------HHHHHHHHHHHHTTHGGGTGS----------------------------------
T ss_pred c------ccccc-------------ccccccccccccccccccccc----------------------------------
Confidence 8 88887 223345566666665441111
Q ss_pred eccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEc
Q psy91 247 TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVD 326 (541)
Q Consensus 247 ~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~D 326 (541)
..+.....+|+|++|++.|+++++. +++++|+|
T Consensus 101 -----------------------------------------~~~~~~~~LS~Ge~~rl~la~al~~------~~~llllD 133 (137)
T PF00005_consen 101 -----------------------------------------KIGQRASSLSGGEKQRLALARALLK------NPKLLLLD 133 (137)
T ss_dssp -----------------------------------------BGTSCGGGSCHHHHHHHHHHHHHHT------TSSEEEEE
T ss_pred -----------------------------------------ccccccchhhHHHHHHHHHHHHHHc------CCCEEEEe
Confidence 0112235689999999999999988 99999999
Q ss_pred CCC
Q psy91 327 TPG 329 (541)
Q Consensus 327 ePg 329 (541)
||.
T Consensus 134 EPt 136 (137)
T PF00005_consen 134 EPT 136 (137)
T ss_dssp STT
T ss_pred CCC
Confidence 996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-15 Score=182.61 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=127.0
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccC-Cccceeccccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN-GSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~-G~~~~~~~~~~~~ 147 (541)
+.|.++|+++.|+. +++|+|+||+| ||+|||||||||||++|+|...+ .. |.+.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-------~~GG~I~--------- 676 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-------RSDASVV--------- 676 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-------CCCceEE---------
Confidence 46999999999974 56999999999 99999999999999999765433 33 3311
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
.+..++||+|++.++. - |++||+.|+. + . ..++...+++.+++... +..+ + ++
T Consensus 677 --l~~~Iayv~Q~p~Lfn-g------TIreNI~fg~-~--~----d~e~y~~vl~a~~L~~d--------i~~L--P-~G 729 (1622)
T PLN03130 677 --IRGTVAYVPQVSWIFN-A------TVRDNILFGS-P--F----DPERYERAIDVTALQHD--------LDLL--P-GG 729 (1622)
T ss_pred --EcCeEEEEcCccccCC-C------CHHHHHhCCC-c--c----cHHHHHHHHHHhCcHHH--------HHhC--C-Cc
Confidence 1346899999999884 3 8999999983 1 1 13345666777766431 1111 0 00
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.- -.+|+.| ..+||||+||++|+
T Consensus 730 d~------------------------------------T~IGe~G---------------------~~LSGGQKQRIaLA 752 (1622)
T PLN03130 730 DL------------------------------------TEIGERG---------------------VNISGGQKQRVSMA 752 (1622)
T ss_pred cc------------------------------------ccccCCC---------------------CCCCHHHHHHHHHH
Confidence 00 0123322 35899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
|+.+. +++++|+|+|..+-+..... . -|.+.+... ..++|+++.+|.+.... ...++.++
T Consensus 753 RAly~------~~~IlLLDEptSALD~~~~~-------~---I~~~~l~~~-l~~kTvIlVTH~l~~l~--~aD~Ii~L 812 (1622)
T PLN03130 753 RAVYS------NSDVYIFDDPLSALDAHVGR-------Q---VFDKCIKDE-LRGKTRVLVTNQLHFLS--QVDRIILV 812 (1622)
T ss_pred HHHhC------CCCEEEECCCccccCHHHHH-------H---HHHHHhhHH-hcCCEEEEEECCHhHHH--hCCEEEEE
Confidence 99999 99999999996654443331 0 122233222 24789999999876433 23445444
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-15 Score=142.43 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC-cceeeccccchh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG-KTTTIEKKSMDI 374 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~-rt~~i~~~~~di 374 (541)
+|+|++|++.|+++++. +++++++|||..|-+..+.. .+.+.+.+..+.+ .++++.+|+.+.
T Consensus 72 LSgGq~qrv~laral~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 72 LSGGELQRVAIAAALLR------NATFYLFDEPSAYLDIEQRL-----------NAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred CCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 67888999999999988 99999999998776655443 5566666654444 788999998775
Q ss_pred hhhcccceeEEEc
Q psy91 375 EERGVKLRLTVVD 387 (541)
Q Consensus 375 ~~~~l~~rvnvIp 387 (541)
.. .++.++.++.
T Consensus 135 ~~-~~~d~i~~l~ 146 (177)
T cd03222 135 LD-YLSDRIHVFE 146 (177)
T ss_pred HH-HhCCEEEEEc
Confidence 43 3455665553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-15 Score=139.61 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=44.5
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
++++++.|.++.+|++++++| +|+||||||||||+++|.+ .+..|+|+ ++|.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~---~~~~ 61 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL---IDGK 61 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCE
Confidence 567888898888999999999 9999999999999999955 45677787 6665
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-15 Score=145.18 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=123.1
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
....+|+||||++ +|||+|||||||||++| ...|++|+|. ++|++.. ... =..
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~---v~G~v~~---------li~-------lg~ 98 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK---VTGKVAP---------LIE-------LGA 98 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE---EcceEeh---------hhh-------ccc
Confidence 3456999999999 99999999999999999 5578899999 8887211 011 012
Q ss_pred ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCC
Q psy91 162 VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYS 241 (541)
Q Consensus 162 ~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~ 241 (541)
.+.|.+ |.+||+.+-.+..++++++..+.+++.++.-.|..
T Consensus 99 Gf~pel------TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~--------------------------------- 139 (249)
T COG1134 99 GFDPEL------TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD--------------------------------- 139 (249)
T ss_pred CCCccc------chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 344667 99999988655556778888888887776555433
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+.+.++...|.|+.-|+.++.+... +|+
T Consensus 140 ----------------------------------------------fi~~PvktYSSGM~aRLaFsia~~~------~pd 167 (249)
T COG1134 140 ----------------------------------------------FIDQPVKTYSSGMYARLAFSVATHV------EPD 167 (249)
T ss_pred ----------------------------------------------HhhCchhhccHHHHHHHHHhhhhhc------CCC
Confidence 1223344567777778877777766 999
Q ss_pred EEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 322 LTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 322 L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++|+||- +.||+.-...|.. .+.+..+.++++++++|+++.. ++++.++-++.
T Consensus 168 ILllDEvlavGD~~F~~K~~~------------rl~e~~~~~~tiv~VSHd~~~I-~~~Cd~~i~l~ 221 (249)
T COG1134 168 ILLLDEVLAVGDAAFQEKCLE------------RLNELVEKNKTIVLVSHDLGAI-KQYCDRAIWLE 221 (249)
T ss_pred EEEEehhhhcCCHHHHHHHHH------------HHHHHHHcCCEEEEEECCHHHH-HHhcCeeEEEe
Confidence 9999999 8998754443322 2334434568899999987744 34666666653
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-15 Score=174.32 Aligned_cols=191 Identities=16% Similarity=0.255 Sum_probs=147.8
Q ss_pred Cceeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
..+.++++++.|+.+. +++++++.| ++.|||||||||++++|.| .+++|+++ +.|.++....+ ..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~---i~g~~i~~~~~---~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEAL---IKGHDITVSTD---FQ 636 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEE---EecCccccccc---hh
Confidence 3567889999999877 999999999 9999999999999999954 67889999 77773322111 11
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
...+.+||.+|.+.+++.+ |.+|++.+-...++++..+..+.++.+++.+|+.+.+
T Consensus 637 ~~~~~iGyCPQ~d~l~~~l------T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~------------------ 692 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEEL------TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA------------------ 692 (885)
T ss_pred hhhhhcccCCchhhhhhhc------cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh------------------
Confidence 2456799999999999999 9999998764455666667777788888888886522
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+......|+|++++++++.
T Consensus 693 -------------------------------------------------------------~~~~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 693 -------------------------------------------------------------NKQVRTYSGGNKRRLSFAI 711 (885)
T ss_pred -------------------------------------------------------------ccchhhCCCcchhhHHHHH
Confidence 2234457899999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
+++. +|.++++|||+.|-+..... ...+.+.+..+.++.++..+|.++-.+
T Consensus 712 alig------~p~vi~LDEPstGmDP~arr-----------~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 712 ALIG------DPSVILLDEPSTGLDPKARR-----------HLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred HHhc------CCCEEEecCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 9988 99999999998886644332 444555566666668889999988554
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-15 Score=146.82 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKK 370 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~ 370 (541)
.+..+|+|++|+++|+++++. +++++|+||| ..+|..... .+.+.+.+..+ ++++++.+|
T Consensus 101 ~~~~lS~G~~qrv~la~al~~------~p~llllDEP~~~lD~~~~~------------~~~~~l~~~~~-~~~ii~vsH 161 (213)
T PRK15177 101 RVSEYSVTMKTHLAFAINLLL------PCRLYIADGKLYTGDNATQL------------RMQAALACQLQ-QKGLIVLTH 161 (213)
T ss_pred hHhhcCHHHHHHHHHHHHHhc------CCCEEEECCCCccCCHHHHH------------HHHHHHHHHhh-CCcEEEEEC
Confidence 345679999999999999998 9999999999 445443322 33333332222 356888899
Q ss_pred cchhhhhcccceeEEE
Q psy91 371 SMDIEERGVKLRLTVV 386 (541)
Q Consensus 371 ~~di~~~~l~~rvnvI 386 (541)
++.... .++.++.++
T Consensus 162 ~~~~~~-~~~d~i~~l 176 (213)
T PRK15177 162 NPRLIK-EHCHAFGVL 176 (213)
T ss_pred CHHHHH-HhcCeeEEE
Confidence 887543 245566555
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-15 Score=179.88 Aligned_cols=188 Identities=16% Similarity=0.168 Sum_probs=125.4
Q ss_pred ceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++|+++.|++ +++|+|+||+| +|+|||||||||||++|+|. +..|+|. ++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~---~~g------------- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH---MKG------------- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE---ECC-------------
Confidence 6999999999974 57999999999 99999999999999999664 5566666 443
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++||+|++.++ .. |++||+.|+.. .. . ++...+++.+++.. .+..+ + .+.
T Consensus 700 ----~i~yv~Q~~~l~-~~------Ti~eNI~~g~~---~~-~---~~~~~~~~~~~l~~--------~l~~~-~--~g~ 750 (1522)
T TIGR00957 700 ----SVAYVPQQAWIQ-ND------SLRENILFGKA---LN-E---KYYQQVLEACALLP--------DLEIL-P--SGD 750 (1522)
T ss_pred ----EEEEEcCCcccc-CC------cHHHHhhcCCc---cC-H---HHHHHHHHHhCCHH--------HHHhc-C--CCC
Confidence 389999998775 45 99999999831 11 1 12233333333321 00000 0 000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
- | ........+||||+||++|++
T Consensus 751 ~-----------------------------------------------t----------~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 751 R-----------------------------------------------T----------EIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred C-----------------------------------------------c----------eecCCCCCCCHHHHHHHHHHH
Confidence 0 0 011224468999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhh--cccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE--NRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e--~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.+. +++++++|||..+-+..... .+.+.+... ...++++++.+|+...... ..++.++
T Consensus 774 Al~~------~~~illLDEp~saLD~~~~~-----------~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~--~D~ii~l 834 (1522)
T TIGR00957 774 AVYS------NADIYLFDDPLSAVDAHVGK-----------HIFEHVIGPEGVLKNKTRILVTHGISYLPQ--VDVIIVM 834 (1522)
T ss_pred HHhc------CCCEEEEcCCccccCHHHHH-----------HHHHHHhhhhhhhcCCEEEEEeCChhhhhh--CCEEEEe
Confidence 9999 99999999997765544432 333333321 1246889999998765442 4555555
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 835 ~ 835 (1522)
T TIGR00957 835 S 835 (1522)
T ss_pred c
Confidence 3
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-14 Score=175.45 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=120.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++++++. .+++|+|+||+| +|+|||||||||||++|+|. +..|+|. ++|
T Consensus 428 ~~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~---~~g--------------- 487 (1490)
T TIGR01271 428 GLFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK---HSG--------------- 487 (1490)
T ss_pred cccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECC---------------
Confidence 4667776664 367999999999 99999999999999999664 5566666 444
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
.++||+|++.+++ . |++||+.|+. +. .. .+...++..+++.. .+..+. .+.-
T Consensus 488 --~iayv~Q~~~l~~-~------Ti~eNI~~g~-~~--~~----~~~~~~~~~~~L~~--------~l~~l~---~g~~- 539 (1490)
T TIGR01271 488 --RISFSPQTSWIMP-G------TIKDNIIFGL-SY--DE----YRYTSVIKACQLEE--------DIALFP---EKDK- 539 (1490)
T ss_pred --EEEEEeCCCccCC-c------cHHHHHHhcc-cc--ch----HHHHHHHHHHhHHH--------HHHhcc---cccc-
Confidence 3899999988875 5 9999999983 11 11 11222233333211 010000 0000
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
-.+| .....+|+|++||++|+++.
T Consensus 540 -----------------------------------t~vg---------------------~~g~~LSgGqkqRi~lARAl 563 (1490)
T TIGR01271 540 -----------------------------------TVLG---------------------EGGITLSGGQRARISLARAV 563 (1490)
T ss_pred -----------------------------------cccc---------------------CcCCCcCHHHHHHHHHHHHH
Confidence 0011 12346899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhh-hhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ-YFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~-~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|+|..+-+..... ++.+ .+.... .++|+++.+|++.... ...++.++.
T Consensus 564 ~~------~~~illLDep~saLD~~~~~-----------~i~~~~l~~~~-~~~tvilvtH~~~~~~--~ad~ii~l~ 621 (1490)
T TIGR01271 564 YK------DADLYLLDSPFTHLDVVTEK-----------EIFESCLCKLM-SNKTRILVTSKLEHLK--KADKILLLH 621 (1490)
T ss_pred Hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-cCCeEEEEeCChHHHH--hCCEEEEEE
Confidence 99 99999999997765544432 2222 122222 3789999999987654 255666654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-15 Score=139.48 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=67.7
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCC-
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST- 161 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~- 161 (541)
.+++|+++|++| .|+|.|||||||||++|+| .+++|.|. ++|. +++..+...+...++-|||++
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~---Idg~----dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL---IDGV----DVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEE---ECce----ecccCCHHHHhhHHHHHhcchh
Confidence 367999999999 8999999999999999955 57899999 8888 666666666777788999996
Q ss_pred -ccccccccccCCCcccceecc
Q psy91 162 -VLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 162 -~l~~~lig~~~qtv~e~l~~~ 182 (541)
...+.+ |+.||+.++
T Consensus 91 ~gt~~~l------TieENl~la 106 (263)
T COG1101 91 AGTAPEL------TIEENLALA 106 (263)
T ss_pred hCCcccc------cHHHHHHHH
Confidence 568899 999999987
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-15 Score=152.67 Aligned_cols=93 Identities=27% Similarity=0.410 Sum_probs=77.5
Q ss_pred CCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.+.|.++++.|. .+++|+++||++ ||+||||+||||++++| .....+|.|. ++|+++ .....
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~---id~qdi----r~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDI----RDVTQ 332 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE---EcchhH----HHhHH
Confidence 45689999999996 467999999998 99999999999999999 7778899999 889843 33333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT 183 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~ 183 (541)
...++.+|.|+||..||.. |...|+.+++
T Consensus 333 ~slR~aIg~VPQDtvLFND-------ti~yni~ygr 361 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-------TIAYNIKYGR 361 (497)
T ss_pred HHHHHHhCcCcccceehhh-------hHHHHHhccC
Confidence 3456679999999999865 5788999984
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-14 Score=140.66 Aligned_cols=208 Identities=9% Similarity=0.067 Sum_probs=125.5
Q ss_pred eeeecccccccccceeecceEEE-EEEcCCCCCHHHHHHHHhc--C-CCCCCeeecccCCc-cceecccccccccccccE
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-MVVGESGLGKSTLVNSLFL--S-DLYGDRKVPNVNGS-NTVIEVAGTKVRGRQYPW 154 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-aIiGpSGsGKSTLL~~L~~--~-~~~G~i~~~~~~G~-~~~~~~~~~~~~~~~~~~ 154 (541)
|.++|. +.|....++.+++-.+ +|+|||||||||||++|.+ . ...|+++ ..|. .++. . ..........+
T Consensus 6 ~~~~~f-~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r---~~~~~~li~-~-~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVR---ASNLQDLIY-K-RGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccccccccc---ccCHHHHhh-c-CCCCCCcEEEE
Confidence 455555 5666666665665556 9999999999999999932 2 2345777 5554 2211 0 11111234578
Q ss_pred EEEeCCC---------ccccccccccCCCcccceeccccccc-h-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 155 GVVEGST---------VLTPSLIGSLFQTDRDYIGFATLPEQ-V-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 155 g~V~Q~~---------~l~~~lig~~~qtv~e~l~~~~~~~~-~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
++++|+. .+.|.+ +|.+++.++..... . .+....+.+..+++.+|+.-- .
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~l------tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~-------------~ 140 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEI------TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVN-------------N 140 (251)
T ss_pred EEEEEcCCcccCcccccCCceE------EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCC-------------C
Confidence 9999984 456677 89888876531111 1 122234567777888777410 0
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
..-++.|.. -+++++... ..+..+..+|+|++|+
T Consensus 141 ------------------~~~~i~Qg~------------------------v~~~~~~~~----~~~~~~~~lS~G~~qr 174 (251)
T cd03273 141 ------------------PHFLIMQGR------------------------ITKVLNMGG----VWKESLTELSGGQRSL 174 (251)
T ss_pred ------------------ceEEEeehH------------------------HHHHHHhHH----hhcccccccCHHHHHH
Confidence 000111110 123444432 3345677899999999
Q ss_pred eEEeeeEE----EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 304 TTIEKKSM----DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 304 v~I~~~~~----~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++|+++++ . +++++|+|||..|-+..... .+.++|.+.. .+.++++.+|..++..
T Consensus 175 ~~la~al~~~~~~------~~~illlDEPt~~ld~~~~~-----------~~~~~l~~~~-~g~~ii~iSH~~~~~~ 233 (251)
T cd03273 175 VALSLILALLLFK------PAPMYILDEVDAALDLSHTQ-----------NIGRMIKTHF-KGSQFIVVSLKEGMFN 233 (251)
T ss_pred HHHHHHHHHhhcc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHc-CCCEEEEEECCHHHHH
Confidence 99998764 3 57999999998776544432 4555555543 3678888999855544
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-14 Score=150.38 Aligned_cols=183 Identities=21% Similarity=0.254 Sum_probs=122.8
Q ss_pred CCCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccc
Q psy91 76 DRDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
....+.++|+++.|++ +.+++++||.| ||+|||||||||||++|++. +.+|.|. + |.
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~---~-g~---------- 383 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK---V-GE---------- 383 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE---e-CC----------
Confidence 3568999999999966 68999999999 99999999999999999543 3456554 2 22
Q ss_pred cccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.-.+||+.|+. .+.+.. |+.+.+.-. .+.. ....+...|..+|..+
T Consensus 384 ----~v~igyf~Q~~~~l~~~~------t~~d~l~~~-~~~~-----~e~~~r~~L~~f~F~~----------------- 430 (530)
T COG0488 384 ----TVKIGYFDQHRDELDPDK------TVLEELSEG-FPDG-----DEQEVRAYLGRFGFTG----------------- 430 (530)
T ss_pred ----ceEEEEEEehhhhcCccC------cHHHHHHhh-Cccc-----cHHHHHHHHHHcCCCh-----------------
Confidence 13589999986 334555 666655432 1000 0223334444444432
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+ ....++..+|||++.|+.
T Consensus 431 ------------------------------------------------------------~-~~~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 431 ------------------------------------------------------------E-DQEKPVGVLSGGEKARLL 449 (530)
T ss_pred ------------------------------------------------------------H-HHhCchhhcCHhHHHHHH
Confidence 1 113456679999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
++..+.. +++++|+|||+.-.++.... .+.+.|. .-.-++++++|+..+... +..++.+
T Consensus 450 La~ll~~------~pNvLiLDEPTNhLDi~s~~-----------aLe~aL~---~f~Gtvl~VSHDr~Fl~~-va~~i~~ 508 (530)
T COG0488 450 LAKLLLQ------PPNLLLLDEPTNHLDIESLE-----------ALEEALL---DFEGTVLLVSHDRYFLDR-VATRIWL 508 (530)
T ss_pred HHHHhcc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHH---hCCCeEEEEeCCHHHHHh-hcceEEE
Confidence 9999988 99999999996655554432 3333333 235578899999876654 4455555
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 509 ~~ 510 (530)
T COG0488 509 VE 510 (530)
T ss_pred Ec
Confidence 53
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-14 Score=169.75 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=114.3
Q ss_pred ccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC--CCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 87 EQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 87 ~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+.++++.+|+++||+| +|+|||||||||||++|+|.. ..|+|. + ...++||+
T Consensus 668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~---~-----------------~~~i~yv~ 727 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW---A-----------------ERSIAYVP 727 (1560)
T ss_pred cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---E-----------------CCeEEEEe
Confidence 4456678999999999 999999999999999997653 344443 1 13589999
Q ss_pred CCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCC
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSI 238 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~ 238 (541)
|++.++ .. |++||+.|+.. . ..++...++...++.. .+..+
T Consensus 728 Q~~~l~-~~------Tv~enI~~~~~-~------~~~~~~~~~~~~~l~~--------~l~~l----------------- 768 (1560)
T PTZ00243 728 QQAWIM-NA------TVRGNILFFDE-E------DAARLADAVRVSQLEA--------DLAQL----------------- 768 (1560)
T ss_pred CCCccC-CC------cHHHHHHcCCh-h------hHHHHHHHHHHhhhHH--------HHHHh-----------------
Confidence 998876 46 99999998621 0 1112233333333221 00000
Q ss_pred CCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe
Q psy91 239 PYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318 (541)
Q Consensus 239 ~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv 318 (541)
.+| -.| ........+|+|++|+++|+++++.
T Consensus 769 -------------------~~g--------------~~t----------~i~~~g~~LSGGQkqRvaLARAl~~------ 799 (1560)
T PTZ00243 769 -------------------GGG--------------LET----------EIGEKGVNLSGGQKARVSLARAVYA------ 799 (1560)
T ss_pred -------------------hcc--------------chH----------HhcCCCCCCCHHHHHHHHHHHHHhc------
Confidence 000 000 0122355799999999999999999
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh-hhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~-~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++++|+|||..+-+..... .+ ...+... ..++++++.+|+.+... ...++.++.
T Consensus 800 ~p~illLDEP~saLD~~~~~-----------~i~~~~~~~~-~~~~TvIlvTH~~~~~~--~ad~ii~l~ 855 (1560)
T PTZ00243 800 NRDVYLLDDPLSALDAHVGE-----------RVVEECFLGA-LAGKTRVLATHQVHVVP--RADYVVALG 855 (1560)
T ss_pred CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHh-hCCCEEEEEeCCHHHHH--hCCEEEEEE
Confidence 99999999996665433221 11 1222111 13789999999887654 355666654
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-13 Score=121.44 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=119.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
+.+++|+... -|-.+|+.+ -+||||||||||||-.++| .+.+|+|. +.|. .+.........+
T Consensus 4 ~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~---~~G~----~l~~~~~~eLAr 72 (248)
T COG4138 4 MQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQ---FAGQ----PLEAWSATELAR 72 (248)
T ss_pred eeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEE---ECCc----chhHHhHhHHHH
Confidence 3445554432 244555555 7999999999999999966 46689999 8888 333333344555
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
..+|+.|+..-...+ .|...+.+. . +.++....++.+...+++.
T Consensus 73 hRAYLsQqq~p~f~m------pV~~YL~L~-q----P~~~~a~~i~~i~~~L~l~------------------------- 116 (248)
T COG4138 73 HRAYLSQQQTPPFAM------PVWHYLTLH-Q----PDKTRTELLNDVAGALALD------------------------- 116 (248)
T ss_pred HHHHHhhccCCcchh------hhhhhhhhc-C----chHHHHHHHHHHHhhhccc-------------------------
Confidence 668888875544444 555555543 1 2222222333333333332
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+ ...+....+|||+=|+|.++.....
T Consensus 117 -----------------------------------------------------D-KL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 117 -----------------------------------------------------D-KLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred -----------------------------------------------------c-hhhhhhhhcCcccceeeEEeEEEEE
Confidence 2 2234456789999999999988877
Q ss_pred eee-cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 313 IEE-RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 313 i~e-~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
+.- -+-.-+|+++|||-.+.++.... .+...|.+..+.++++++..|++.
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~-----------aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQS-----------ALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHH-----------HHHHHHHHHHhCCcEEEEeccchh
Confidence 643 34456899999998877665543 566777888899999999998875
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-13 Score=157.88 Aligned_cols=160 Identities=20% Similarity=0.207 Sum_probs=116.9
Q ss_pred CCceeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+|+|++.+|... .||+||||+| ||||+.|||||||+.+| +..+..|.|. ++|. ++..-.
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~---IDgv----dI~~ig 1208 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL---IDGV----DISKIG 1208 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE---EcCe----eccccc
Confidence 4579999999999765 6999999999 99999999999999999 6667889999 8887 444444
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....|.+++.++|++.|| .| |+|.|+.=- ...+. +.+-++|+.++|...-.+.. .+++..
T Consensus 1209 L~dLRsrlsIIPQdPvLF---sG----TvR~NLDPf---~e~sD----~~IW~ALe~~~Lk~~v~~~p----~~Ld~~-- 1268 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLF---SG----TVRFNLDPF---DEYSD----DEIWEALERCQLKDVVSSLP----GGLDSE-- 1268 (1381)
T ss_pred HHHHHhcCeeeCCCCcee---cC----ccccccCcc---cccCH----HHHHHHHHHhChHHHHhhCC----cCCCce--
Confidence 556778899999999999 66 899988621 11222 33445666666643211100 001100
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+. ..-.+.|-||+|-+++
T Consensus 1269 -----------------------------------------v~---------------------egG~N~SvGQRQLlCL 1286 (1381)
T KOG0054|consen 1269 -----------------------------------------VS---------------------EGGENFSVGQRQLLCL 1286 (1381)
T ss_pred -----------------------------------------ec---------------------CCCccCChHHHHHHHH
Confidence 00 1123468899999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+|++.. +-+++|+||.+..
T Consensus 1287 ARALLr------~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1287 ARALLR------KSKILVLDEATAS 1305 (1381)
T ss_pred HHHHhc------cCCEEEEeccccc
Confidence 999999 9999999999764
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-14 Score=136.27 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=57.8
Q ss_pred eeeecccccccccceeecceEEE-EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+.++|.. +|++..+|+++++.+ +|+|||||||||||++|. + +.|.. .. ..+...+++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~--------~---~~G~~----~~----~~~~~~i~~~~ 65 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSML--------F---VFGFR----AS----KMRQKKLSDLI 65 (212)
T ss_pred EEEECcc-cCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHH--------H---HhccC----HH----HhhhhhHHHHh
Confidence 5566655 788899999999999 999999999999999995 2 33441 11 11224578889
Q ss_pred CCCccccccccccCCCcccceecc
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
|...+++.+ ++.++..+-
T Consensus 66 ~~~~~~~~~------~~~~~~~~~ 83 (212)
T cd03274 66 HNSAGHPNL------DSCSVEVHF 83 (212)
T ss_pred cCCCCCCCC------ceEEEEEEE
Confidence 988888888 888876654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=7e-13 Score=154.45 Aligned_cols=179 Identities=21% Similarity=0.279 Sum_probs=122.4
Q ss_pred CCCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC--CCCeeecccCCccceecccc
Q psy91 76 DRDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL--YGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~--~G~i~~~~~~G~~~~~~~~~ 144 (541)
....|.++|.+++++. .+.|+||||+| ||+||-|||||+||.+|+|.-. +|.+. ++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~---v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA---VNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE---EcCe--------
Confidence 3446888999888864 34899999999 9999999999999999977543 45554 4433
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
++||+|.+.++. | ||+||+.||. +. ..++-+.+++.+.|.. .+..+
T Consensus 584 ---------iaYv~Q~pWI~n---g----TvreNILFG~-~~------d~~rY~~Vi~aC~L~~--------Dle~L--- 629 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQN---G----TVRENILFGS-PY------DEERYDKVIKACALKK--------DLEIL--- 629 (1381)
T ss_pred ---------EEEeccccHhhC---C----cHHHhhhcCc-cc------cHHHHHHHHHHccCHh--------HHhhc---
Confidence 799999988773 3 8999999992 21 2234445566555542 11000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..++. -.+|+.| .++||||+||+
T Consensus 630 p~GD~------------------------------------TeIGErG---------------------inLSGGQKqRI 652 (1381)
T KOG0054|consen 630 PFGDL------------------------------------TEIGERG---------------------INLSGGQKQRI 652 (1381)
T ss_pred CCCCc------------------------------------ceecCCc---------------------cCCcHhHHHHH
Confidence 01111 1345555 25899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
++||+.+. +.++.++|-| +.-|+-...+ -|++.+ .-.-.++|++..+|.+.+
T Consensus 653 sLARAVY~------~adIYLLDDplSAVDahvg~~-----------if~~ci-~~~L~~KT~ILVTHql~~ 705 (1381)
T KOG0054|consen 653 SLARAVYQ------DADIYLLDDPLSAVDAHVGKH-----------IFEECI-RGLLRGKTVILVTHQLQF 705 (1381)
T ss_pred HHHHHHhc------cCCEEEEcCcchhhhHhhhHH-----------HHHHHH-HhhhcCCEEEEEeCchhh
Confidence 99999999 9999999999 7777654443 233333 111236788888886553
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=128.10 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=65.7
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+.+...+..+..+|+|++|++.|+++++. ++ +++|+|||..|-+..... ++.++|.
T Consensus 121 l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~------~p~~~llllDEPt~gLD~~~~~-----------~l~~~l~ 183 (226)
T cd03270 121 LVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS------GLTGVLYVLDEPSIGLHPRDND-----------RLIETLK 183 (226)
T ss_pred HHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh------CCCCCEEEEeCCccCCCHHHHH-----------HHHHHHH
Confidence 3444433323456778899999999999999987 66 699999998886655443 6666776
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+..+.+.++++.+|+++.. ..+.++.++
T Consensus 184 ~~~~~g~tii~itH~~~~~--~~~d~i~~l 211 (226)
T cd03270 184 RLRDLGNTVLVVEHDEDTI--RAADHVIDI 211 (226)
T ss_pred HHHhCCCEEEEEEeCHHHH--HhCCEEEEe
Confidence 6655688999999998754 367777776
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-12 Score=125.85 Aligned_cols=87 Identities=6% Similarity=-0.056 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++.. ..-+++++|+|||..|-+..... .+.+.|.+..+ +.++++.+
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~--~~~~~~illlDEp~~~ld~~~~~-----------~~~~~l~~~~~-~~~ii~~~ 218 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQ--KCDPAPFYLFDEIDAALDAQYRT-----------AVANMIKELSD-GAQFITTT 218 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHh--ccCCCCEEEEECCccCCCHHHHH-----------HHHHHHHHHhC-CCEEEEEe
Confidence 445677999999999999988410 00057999999998876654432 56666665544 56667777
Q ss_pred ccchhhhhcccceeEEEcCCCCC
Q psy91 370 KSMDIEERGVKLRLTVVDTPGFG 392 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvIpvi~k~ 392 (541)
|..++ .++..++.++.+-.++
T Consensus 219 h~~~~--~~~~d~i~~l~~~~~~ 239 (243)
T cd03272 219 FRPEL--LEVADKFYGVKFRNKV 239 (243)
T ss_pred cCHHH--HhhCCEEEEEEEECCE
Confidence 77543 3577777777665443
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-12 Score=121.39 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCcceEEeeeEE----EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee
Q psy91 291 RKVPNVNDRQGKTTTIEKKSM----DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT 366 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~----~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~ 366 (541)
..+..+|+|++|++.|+++++ . +++++++|||..|-+..... .+.+.+.+..+ +.+++
T Consensus 109 ~~~~~LS~G~kqrl~la~~l~~~~~~------~~~illlDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiI 170 (197)
T cd03278 109 QRLSLLSGGEKALTALALLFAIFRVR------PSPFCVLDEVDAALDDANVE-----------RFARLLKEFSK-ETQFI 170 (197)
T ss_pred cchhhcCHHHHHHHHHHHHHHHhccC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhcc-CCEEE
Confidence 345668999999999998753 3 56899999998776654443 45555555543 56788
Q ss_pred eccccchhhhhcccceeEEEcCCC
Q psy91 367 IEKKSMDIEERGVKLRLTVVDTPG 390 (541)
Q Consensus 367 i~~~~~di~~~~l~~rvnvIpvi~ 390 (541)
+.+|+.++. ..+.++..|--..
T Consensus 171 iitH~~~~~--~~~d~v~~~~~~~ 192 (197)
T cd03278 171 VITHRKGTM--EAADRLYGVTMQE 192 (197)
T ss_pred EEECCHHHH--hhcceEEEEEecc
Confidence 899998754 3566666654333
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-12 Score=132.51 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=96.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccch--hhh-hhhhhccceeeEeccCCcchhHH
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQ--VHR-KSVKKGFDFTLMVVGESGLGKST 277 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q--~~~-~~vk~g~~f~lmv~G~sg~GKsT 277 (541)
++.+|..+.+++++.+.+.+...|..+++..- + ..+-.+|.|..-|.+ +.+ -.......-.+-++|+.|.||||
T Consensus 329 Ik~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~--p-~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst 405 (582)
T KOG0062|consen 329 IKMLGKLPALKSTLIEVLIGFLFPTEGEVLSP--P-NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKST 405 (582)
T ss_pred HHHhccCCCCCccceecccceecCCCCCcCCC--C-eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHH
Confidence 88889999999999988888888765543211 1 123345666655553 322 22333445567889999999999
Q ss_pred HHhhhccccc-----------------------------------------------------------CCCCCCCCCCC
Q psy91 278 LVNSLFLSDL-----------------------------------------------------------YGDRKVPNVND 298 (541)
Q Consensus 278 ~in~L~~~~~-----------------------------------------------------------~~~~~~~~ls~ 298 (541)
++..+..... +....+..+||
T Consensus 406 ~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSG 485 (582)
T KOG0062|consen 406 LLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSG 485 (582)
T ss_pred HHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCC
Confidence 9777632100 00112345899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCC-CCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPG-FGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg-~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
||+.+|.+|...+. +|+|+|+|||+ +.|- +.- ...-.....-+-.+++++|+.++..
T Consensus 486 GQKsrvafA~~~~~------~PhlLVLDEPTNhLD~-dsl--------------~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 486 GQKSRVAFAACTWN------NPHLLVLDEPTNHLDR-DSL--------------GALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred cchhHHHHHHHhcC------CCcEEEecCCCccccH-HHH--------------HHHHHHHHhcCCcEEEEECcHHHHh
Confidence 99999999999998 99999999994 4432 211 1111112222445788888877654
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.9e-12 Score=126.61 Aligned_cols=108 Identities=44% Similarity=0.811 Sum_probs=91.0
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh-------hcccCcceeeccccchhhhhcccceeEEEc
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND-------ENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~-------e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.+|+.+.++++++-|.|.+ .||...|.+-+.. ..+..+++.+..+...|++.+++++|||||
T Consensus 17 KkG~~ftlmvvG~sGlGKs-----------TfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvid 85 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKS-----------TFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVID 85 (366)
T ss_pred hcCCceEEEEecCCCccHH-----------HHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEec
Confidence 5788999999999999975 2334344443322 123345677788888999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~i~d~~v~ 433 (541)
|+|+||.++++.||++|++||++||++|+.+|+.++|..+.|+|||
T Consensus 86 tPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH 131 (366)
T KOG2655|consen 86 TPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVH 131 (366)
T ss_pred cCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceE
Confidence 9999999999999999999999999999999999999999999998
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-12 Score=132.49 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCee
Q psy91 77 RDYIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRK 129 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~ 129 (541)
.|.|-+.|+++.|.+. .++++++|-| |+||||||||||||+++.+. |..|.|.
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 5689999999999876 5899999987 99999999999999999554 4455544
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-11 Score=124.48 Aligned_cols=69 Identities=26% Similarity=0.356 Sum_probs=53.0
Q ss_pred ccccccccccccCCCCCCCCCCCceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCC
Q psy91 56 LTFPEAYRIKMTPDGGSCATDRDYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLY 125 (541)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~ 125 (541)
+.-+..|.|+..-+. +..-.+|.+++.+|+|.| +.+++++.++|-| |||||||.||||||++|.|..++
T Consensus 564 L~RpKEY~VkF~FPe-p~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P 639 (807)
T KOG0066|consen 564 LQRPKEYSVKFQFPE-PTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP 639 (807)
T ss_pred HhCchheEEEEecCC-CCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC
Confidence 444446777654322 123345789999999999 5678999999977 99999999999999999887665
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-11 Score=117.43 Aligned_cols=85 Identities=12% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCcceEEeeeEEE---e-eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMD---I-EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT 366 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~---i-~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~ 366 (541)
..+..+|+|+++++.++++++. + .-.+.+++++|+|||..|-+..... .+.+++.+..+.+.+++
T Consensus 119 ~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~-----------~~~~~l~~~~~~~~tii 187 (213)
T cd03279 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE-----------AVATALELIRTENRMVG 187 (213)
T ss_pred CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEE
Confidence 4456789999999999998853 0 0012357899999998776554432 56667766655578999
Q ss_pred eccccchhhhhcccceeEEEc
Q psy91 367 IEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 367 i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+|+.++.. .+..++.++.
T Consensus 188 ~itH~~~~~~-~~~~~i~~~~ 207 (213)
T cd03279 188 VISHVEELKE-RIPQRLEVIK 207 (213)
T ss_pred EEECchHHHH-hhCcEEEEEe
Confidence 9999877543 4566666654
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-11 Score=122.14 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+..+..++.+..+|+|++|++.|++++.. +...++++|+|||..|.+..... .+.+.|.+
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~---~~~~p~lllLDEPtsgLD~~~~~-----------~l~~~L~~ 217 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK---RSTGKTLYILDEPTTGLHFHDVK-----------KLLEVLQR 217 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc---CCCCCcEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 44445444433456678899999999999999876 00126899999998886654442 55666666
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.++++.+|++++.. ...++.++
T Consensus 218 l~~~g~tvIiitH~~~~i~--~aD~ii~L 244 (261)
T cd03271 218 LVDKGNTVVVIEHNLDVIK--CADWIIDL 244 (261)
T ss_pred HHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 6666889999999988653 34444444
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-11 Score=123.58 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
...++++|+.+.|... --+..||++| -|+|.||||||||++.| +..|.+|+|+ ++|+ .+++...
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~---ldg~----pV~~e~l 392 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL---LDGK----PVSAEQL 392 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee---ECCc----cCCCCCH
Confidence 5579999999999766 4678899998 89999999999999999 5679999999 9999 5666655
Q ss_pred ccccccEEEEeCCCcccccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSL 167 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~l 167 (541)
.+.+.-++-||-|..||+.+
T Consensus 393 edYR~LfSavFsDyhLF~~l 412 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQL 412 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhh
Confidence 66666778888888888776
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-10 Score=99.04 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=52.4
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP 165 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~ 165 (541)
..+|++++|.+ +|+||||||||||++++. .|.+. +.|.+ ..........+.+++++|+ ++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~---~~g~d----i~~~~~~~~~~~~~~~~q~--lf- 67 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI----KRKHR---LVGDD----NVEIREDSKDELIGRNPEL--GL- 67 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEE---EeeEe----HHHhhhhhcCCEEEEechh--cc-
Confidence 46899999988 999999999999999996 67888 77773 3222223344456777776 22
Q ss_pred ccccccCCCcccceecc
Q psy91 166 SLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 166 ~lig~~~qtv~e~l~~~ 182 (541)
+- ++++|+.++
T Consensus 68 ~~------ti~~Ni~~~ 78 (107)
T cd00820 68 EI------RLRLNIFLI 78 (107)
T ss_pred hh------hHHhhceee
Confidence 23 789999885
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=111.06 Aligned_cols=78 Identities=5% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCCCCCCCCCcc------eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccc
Q psy91 292 KVPNVNDRQGKT------TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKT 364 (541)
Q Consensus 292 ~~~~ls~g~~q~------v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt 364 (541)
.+..+|+|++++ ++|+++... +++++++|||..+-+.... ++.+.+++.+..+. +++
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~------~p~illlDEP~~~LD~~~~----------~~~l~~~l~~~~~~~~~~ 175 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGS------NCGILALDEPTTNLDEENI----------EESLAEIIEERKSQKNFQ 175 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhcc------CCCEEEEcCCccccCHHHH----------HHHHHHHHHHHHhccCCE
Confidence 355688999986 567777766 8999999999776544332 11466667666555 778
Q ss_pred eeeccccchhhhhcccceeEEEc
Q psy91 365 TTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++.+|+.++.. ...++..+.
T Consensus 176 iiiitH~~~~~~--~~d~i~~l~ 196 (204)
T cd03240 176 LIVITHDEELVD--AADHIYRVE 196 (204)
T ss_pred EEEEEecHHHHh--hCCEEEEEe
Confidence 999999877653 345665554
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-10 Score=127.45 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=119.6
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC-----CCCeeecccCCccceecccccccccccccEEEEeCC
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL-----YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGS 160 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~-----~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~ 160 (541)
..+|+|+++.+ .++||.||||||||++|+|..+ +|+|. .+|. +.+.. .. ++.++|..|+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~is---y~G~----~~~e~--~~-~~~~aY~~e~ 197 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEIT---YNGH----DLKEF--VP-KKTVAYNSEQ 197 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCcee---ECCC----ccccc--cc-CceEEecccc
Confidence 36999999988 8999999999999999966432 46777 6666 22111 11 5678999999
Q ss_pred CccccccccccCCCcccceeccc---ccc----chhhHhHhh-hHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 161 TVLTPSLIGSLFQTDRDYIGFAT---LPE----QVHRKSVKK-GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 161 ~~l~~~lig~~~qtv~e~l~~~~---~~~----~~~~~e~~~-~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
+..+|++ ||+|++.|+. .+. ...+.+..+ ..+.+++.+||++++++.+++.+
T Consensus 198 DvH~p~l------TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~-------------- 257 (1391)
T KOG0065|consen 198 DVHFPEL------TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDM-------------- 257 (1391)
T ss_pred cccccee------EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccc--------------
Confidence 9999999 9999999971 221 122333222 56778999999998776554222
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
....|||+++|++++...+.
T Consensus 258 ------------------------------------------------------------~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 258 ------------------------------------------------------------VRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred ------------------------------------------------------------cccccCcccceeeeeeeeec
Confidence 23468899999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~ 362 (541)
+.+++..|+++-|.+-.... +|.+.++...+..
T Consensus 278 ------~~~~~~~De~t~GLDSsTal-----------~iik~lr~~a~~~ 310 (1391)
T KOG0065|consen 278 ------PASILFWDEITRGLDSSTAF-----------QIIKALRQLAHIT 310 (1391)
T ss_pred ------CcceeeeecccccccHHHHH-----------HHHHHHHHHHhhh
Confidence 99999999997776544433 5666666666553
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-10 Score=115.29 Aligned_cols=109 Identities=37% Similarity=0.730 Sum_probs=88.3
Q ss_pred eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-----c---cCcceeeccccchhhhhcccceeEE
Q psy91 314 EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-----R---QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 314 ~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-----~---~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
..+|+++.++++.+.|.|.+. ||..-|.+-+.... + ...++.+......+++.+++.++||
T Consensus 18 ~k~Gi~f~im~~G~sG~GKtt-----------fiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~v 86 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTT-----------FINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTV 86 (373)
T ss_pred HhcCCceEEEEecCCCCchhH-----------HHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEE
Confidence 356899999999999999763 33333444333331 1 1244556667778888999999999
Q ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccc-cccchhhh
Q psy91 386 VDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRK-NIVDNRFA 433 (541)
Q Consensus 386 Ipvi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~-~i~d~~v~ 433 (541)
|+++|+||.++++.||.+|++||++||++|+.+|....|. .+.|+|||
T Consensus 87 IDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH 135 (373)
T COG5019 87 IDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVH 135 (373)
T ss_pred eccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceE
Confidence 9999999999999999999999999999999999999887 79999999
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-10 Score=124.30 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=109.8
Q ss_pred CCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccc
Q psy91 77 RDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
...|.++|++..-++ ...|++.++.| .|.||||||||||+|+|+|...-|+ |. +..+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~-------G~---I~~P------ 453 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS-------GR---ISMP------ 453 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC-------Cc---eecC------
Confidence 467899999998865 57899999999 8999999999999999988766432 33 1111
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
....+-|++|.+.+- -| |.+|.+.++...... ..+.+.++|..+||.++..+
T Consensus 454 ~~~~~lflpQ~PY~p---~G----tLre~l~YP~~~~~~----~d~~l~~vL~~vgL~~L~~r----------------- 505 (604)
T COG4178 454 ADSALLFLPQRPYLP---QG----TLREALCYPNAAPDF----SDAELVAVLHKVGLGDLAER----------------- 505 (604)
T ss_pred CCCceEEecCCCCCC---Cc----cHHHHHhCCCCCCCC----ChHHHHHHHHHcCcHHHHHH-----------------
Confidence 123467889976654 22 788888887433222 23446677888888764433
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
|-..+ +--..+|+|++|++++++.
T Consensus 506 ----------------------------------------------------l~~~~----~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 506 ----------------------------------------------------LDEED----RWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred ----------------------------------------------------HhccC----cHhhhcChhHHHHHHHHHH
Confidence 11111 1123489999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+.. +|++.++||-+..-+...+
T Consensus 530 lL~------kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 530 LLH------KPKWVFLDEATSALDEETE 551 (604)
T ss_pred HHc------CCCEEEEecchhccChHHH
Confidence 999 9999999999766554444
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=121.96 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred CCCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCC
Q psy91 74 ATDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLY 125 (541)
Q Consensus 74 ~~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~ 125 (541)
..+...|.+.++++.|.+..+++|+.|++ +|+|||||||||+|++|.+...+
T Consensus 70 ~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 70 HPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred CcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 34556789999999999999999999999 99999999999999999665433
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-10 Score=113.38 Aligned_cols=80 Identities=8% Similarity=-0.043 Sum_probs=56.4
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
.+..+|+|+++++.|+++++.- .--+++++|+|||..|-+..... .+.+++.+..+.+.++++.+|+
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~--~~~~p~~lllDEPt~~LD~~~~~-----------~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIH--SYQPAPFFVLDEVDAALDNTNVG-----------KVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHh--ccCCCCEEEEecccccCCHHHHH-----------HHHHHHHHhccCCcEEEEEECC
Confidence 4456899999999999987530 00047999999998876655443 5566666665557889999998
Q ss_pred chhhhhcccceeEEE
Q psy91 372 MDIEERGVKLRLTVV 386 (541)
Q Consensus 372 ~di~~~~l~~rvnvI 386 (541)
.++. ..+.++.++
T Consensus 219 ~~~~--~~~d~i~~~ 231 (247)
T cd03275 219 EEFF--SKADALVGV 231 (247)
T ss_pred HHHH--hhCCeEEEE
Confidence 6654 356666665
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.1e-10 Score=116.42 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=105.7
Q ss_pred Cceeeecccccccc-c-ceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHR-K-SVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|++++|+..-++ . .+.+++||.| .|+||||||||+|||+|++.... ..|+.. .. .+.
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-------~~G~l~-k~-----~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-------TGGKLT-KP-----TDG 498 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-------CCCeEE-ec-----ccC
Confidence 58999999998875 4 4777899999 89999999999999999887653 233310 00 001
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
-...+=||+|.+.+. .| |.++.+.|+.... ...+....+++...|+.++|.++.. ...|++..
T Consensus 499 ~~~~lfflPQrPYmt---~G----TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-----r~ggld~~---- 562 (659)
T KOG0060|consen 499 GPKDLFFLPQRPYMT---LG----TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-----REGGLDQQ---- 562 (659)
T ss_pred CCCceEEecCCCCcc---cc----chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-----HhCCCCch----
Confidence 113477999987765 55 7888888872211 1122223345666777777766311 11222110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
........+|.|++||+++|+
T Consensus 563 -----------------------------------------------------------~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 563 -----------------------------------------------------------VDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred -----------------------------------------------------------hhccHHhhcCHHHHHHHHHHH
Confidence 001123458999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCC
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+. +|++-|+||-+..
T Consensus 584 Lfy~------kPk~AiLDE~TSA 600 (659)
T KOG0060|consen 584 LFYH------KPKFAILDECTSA 600 (659)
T ss_pred HHhc------CCceEEeechhhh
Confidence 9888 9999999997553
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-10 Score=106.37 Aligned_cols=108 Identities=40% Similarity=0.698 Sum_probs=85.8
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhh-------cccCcceeeccccchhhhhcccceeEEEc
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE-------NRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e-------~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
..|++++++++.-.|.|.+.-. ...|...+-.. ....+|+-+......|+++++..++|+||
T Consensus 42 k~GF~FNIMVVgqSglgkstli-----------nTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviD 110 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLI-----------NTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVID 110 (336)
T ss_pred hccCceEEEEEecCCCCchhhH-----------HHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEec
Confidence 3578999999999999987322 12333333221 12345566666667789999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCccccccc-ccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNR-KNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~-~~i~d~~v~ 433 (541)
++|+||.+|++.||.||..||.+|+.+|+.+|...+| +.|.|.|||
T Consensus 111 TPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVH 157 (336)
T KOG1547|consen 111 TPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVH 157 (336)
T ss_pred CCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEE
Confidence 9999999999999999999999999999999988776 468999998
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=114.03 Aligned_cols=198 Identities=14% Similarity=0.194 Sum_probs=140.9
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+++++++..- .++++||++ +|.|-=|||+|=|+++|.| ....|+|. ++|+.+... .+..
T Consensus 261 ~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~---l~G~~v~~~---sp~~ 330 (500)
T COG1129 261 EPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL---LDGKPVRIR---SPRD 330 (500)
T ss_pred CcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEE---ECCEEccCC---CHHH
Confidence 4567788876532 589999998 9999999999999999955 45689999 999833221 1233
Q ss_pred cccccEEEEeCC---CccccccccccCCCcccceeccccccc-----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 149 GRQYPWGVVEGS---TVLTPSLIGSLFQTDRDYIGFATLPEQ-----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 149 ~~~~~~g~V~Q~---~~l~~~lig~~~qtv~e~l~~~~~~~~-----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
..+..++||+.| ..++..+ ++.+|+.++.+... +......+.+..+...+++
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~------sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I-------------- 390 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDM------SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-------------- 390 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCC------cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc--------------
Confidence 455689999987 5677777 99999998722210 1111112222222222222
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..--.+..+..+|||.
T Consensus 391 ----------------------------------------------------------------k~~s~~~~v~~LSGGN 406 (500)
T COG1129 391 ----------------------------------------------------------------KTPSPEQPIGTLSGGN 406 (500)
T ss_pred ----------------------------------------------------------------ccCCccchhhcCCchh
Confidence 1112234566799999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|++.+.. +|+++|+|||+-|=++.... .+-+.+.+..+.+..+++.+.+++ |-.+++
T Consensus 407 QQKVvlarwL~~------~p~vLilDEPTRGIDVGAK~-----------eIy~li~~lA~~G~ail~iSSElp-Ell~~~ 468 (500)
T COG1129 407 QQKVVLARWLAT------DPKVLILDEPTRGIDVGAKA-----------EIYRLIRELAAEGKAILMISSELP-ELLGLS 468 (500)
T ss_pred hhhHHHHHHHhc------CCCEEEECCCCcCcccchHH-----------HHHHHHHHHHHCCCEEEEEeCChH-HHHhhC
Confidence 999999999988 99999999999998877764 677788888889999988886654 335788
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.|+.|.
T Consensus 469 DRIlVm 474 (500)
T COG1129 469 DRILVM 474 (500)
T ss_pred CEEEEE
Confidence 888775
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-09 Score=103.33 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.4
Q ss_pred cceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccccc
Q psy91 92 KSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSL 167 (541)
Q Consensus 92 ~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~l 167 (541)
..+++++++.. +|+|||||||||||++|.+... +. ..|. .++ . ..+++|.+.+++++
T Consensus 14 ~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~---l~---~~G~----~v~-----a----~~~~~q~~~l~~~~ 74 (199)
T cd03283 14 KRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVI---LA---QAGA----PVC-----A----SSFELPPVKIFTSI 74 (199)
T ss_pred CeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHH---HH---HcCC----EEe-----c----CccCcccceEEEec
Confidence 45788888765 9999999999999999954211 11 2454 111 1 13677878899999
Q ss_pred ccccCCCcccceecc
Q psy91 168 IGSLFQTDRDYIGFA 182 (541)
Q Consensus 168 ig~~~qtv~e~l~~~ 182 (541)
++.|++.++
T Consensus 75 ------~~~d~l~~~ 83 (199)
T cd03283 75 ------RVSDDLRDG 83 (199)
T ss_pred ------cchhccccc
Confidence 999999886
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-10 Score=113.32 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=99.7
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccc--hhhhhhhhhccceeeEeccCCcchhHHH
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKSTL 278 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~--q~~~~~vk~g~~f~lmv~G~sg~GKsT~ 278 (541)
+..+|.+|.||||+.+.++|..+++.+. ..+....+..+||.-.+.-. ++.+......+ .+.-=|+.+
T Consensus 370 igilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~--------~~s~~~~ei 439 (591)
T COG1245 370 IGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAF--------GSSYFKTEI 439 (591)
T ss_pred EEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhc--------ccchhHHhh
Confidence 7789999999999999999999987665 11111122222222221111 22222222111 111225677
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++-|-+.+ +.++.+..+|||+-|+++|+.++.. ...|.++||| .|.|.......-+.|..+|+
T Consensus 440 ~~pl~l~~-i~e~~v~~LSGGELQRvaIaa~L~r------eADlYllDEPSA~LDvEqR~~vakvIRR~~e--------- 503 (591)
T COG1245 440 VKPLNLED-LLERPVDELSGGELQRVAIAAALSR------EADLYLLDEPSAYLDVEQRIIVAKVIRRFIE--------- 503 (591)
T ss_pred cCccchHH-HHhcccccCCchhHHHHHHHHHhcc------ccCEEEecCchhhccHHHHHHHHHHHHHHHh---------
Confidence 77777766 4567889999999999999999988 8999999999 77776544443343333333
Q ss_pred hcccCcceeeccccchhhhhcccceeEEEc
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
...++..+..|++-+.+. ++.|+.+..
T Consensus 504 --~~~kta~vVdHDi~~~dy-vsDr~ivF~ 530 (591)
T COG1245 504 --NNEKTALVVDHDIYMIDY-VSDRLIVFE 530 (591)
T ss_pred --hcCceEEEEecceehhhh-hhceEEEEe
Confidence 234567777777654433 777777764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-09 Score=99.79 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC-CCccchhhhhhhhhhhhhhhhhhhhhhcccC-cceeecc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG-DSINSEESWRACCSYIDDQFRQYFNDENRQG-KTTTIEK 369 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G-d~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~-rt~~i~~ 369 (541)
++..+.+|+.|.|.|+.+.+. +++|+|.|||+.. +.+... |+...|...++.+ .++...+
T Consensus 155 YP~ElTeGE~QKVMIA~A~An------qPrLLIADEPTN~~e~~Tq~------------QifRLLs~mNQn~~TtILL~s 216 (330)
T COG4170 155 YPYELTEGECQKVMIAIALAN------QPRLLIADEPTNSMEPTTQA------------QIFRLLSRLNQNSNTTILLIS 216 (330)
T ss_pred CcchhccCcceeeeeehhhcc------CCceEeccCCCcccCccHHH------------HHHHHHHHhhccCCceEEEEc
Confidence 455677899999999999998 9999999999543 333222 7777777776654 4555666
Q ss_pred ccchhhhhcccceeEEE
Q psy91 370 KSMDIEERGVKLRLTVV 386 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvI 386 (541)
|++.-. ..-..+++|.
T Consensus 217 ~Dl~~i-s~W~d~i~Vl 232 (330)
T COG4170 217 HDLQMI-SQWADKINVL 232 (330)
T ss_pred ccHHHH-HHHhhheEEE
Confidence 654321 1344455554
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-09 Score=107.97 Aligned_cols=107 Identities=37% Similarity=0.777 Sum_probs=78.1
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc--------ccCcceeeccccchhhhhcccceeEEEc
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN--------RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~--------~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|++++|+|+.+.|.|++ .||+.-|...+.... ...++..+..+...+.+.++..+++||+
T Consensus 1 kg~~fnImVvG~sG~GKT-----------TFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiD 69 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKT-----------TFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIID 69 (281)
T ss_dssp HEEEEEEEEEECTTSSHH-----------HHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEE
T ss_pred CCceEEEEEECCCCCCHH-----------HHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEe
Confidence 478999999999999975 234444444333332 1234455666667777788999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~i~d~~v~ 433 (541)
++|+||.++++.+|++|++||++||+.|+.+|....|..+.|+|||
T Consensus 70 TpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH 115 (281)
T PF00735_consen 70 TPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVH 115 (281)
T ss_dssp EC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EE
T ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcc
Confidence 9999999999999999999999999999999999988889999998
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-09 Score=100.31 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCCcceEEeeeE----EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc---
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKS----MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--- 361 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~----~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--- 361 (541)
.+..+..+|+|+++++.|++++ +. +++++|+|||..|-+..... .+.++|.+..+.
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~------~p~illlDEP~~glD~~~~~-----------~~~~~l~~~~~~~~~ 165 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVM------ESPFRCLDEFDVFMDMVNRK-----------ISTDLLVKEAKKQPG 165 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhccc------CCCEEEecCcccccCHHHHH-----------HHHHHHHHHHhcCCC
Confidence 3445677899999999998876 45 89999999997776655443 556666665332
Q ss_pred CcceeeccccchhhhhcccceeEEEcC
Q psy91 362 GKTTTIEKKSMDIEERGVKLRLTVVDT 388 (541)
Q Consensus 362 ~rt~~i~~~~~di~~~~l~~rvnvIpv 388 (541)
+.++++.+|+++.... + .+|-|.++
T Consensus 166 ~~~iii~th~~~~i~~-~-d~v~~~~~ 190 (198)
T cd03276 166 RQFIFITPQDISGLAS-S-DDVKVFRM 190 (198)
T ss_pred cEEEEEECCccccccc-c-cceeEEEe
Confidence 3477888888876543 2 45555554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-09 Score=126.50 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeec
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~ 368 (541)
.++.+..+|+|++|++.|+++++. ...+++++|+|||..|.+..... ++.++|.+..+.+.++++.
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~---~~~~P~LLILDEPTsGLD~~~~~-----------~Ll~lL~~L~~~G~TVIiI 868 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLA---PSKKPTLYVLDEPTTGLHTHDIK-----------ALIYVLQSLTHQGHTVVII 868 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhh---cCCCCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEE
Confidence 456678899999999999999851 00179999999998886655443 6777777776678899999
Q ss_pred cccchhhhhcccceeEEE
Q psy91 369 KKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 369 ~~~~di~~~~l~~rvnvI 386 (541)
+|++++. ....++.++
T Consensus 869 sHdl~~i--~~aDrVi~L 884 (1809)
T PRK00635 869 EHNMHVV--KVADYVLEL 884 (1809)
T ss_pred eCCHHHH--HhCCEEEEE
Confidence 9999876 466676666
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.9e-08 Score=100.63 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=142.3
Q ss_pred CCCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccc-c
Q psy91 76 DRDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAG-T 145 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~-~ 145 (541)
..+.+++++|+..-.. ...+++|||+| +|.|=+|-|-+-|+.+|+|. +..|.|. ++|+++ ... .
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~---l~G~~v---~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL---LNGKDV---LGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEE---ECCEec---cccCC
Confidence 4568899999887654 47899999999 99999999999999999553 5679999 889843 111 1
Q ss_pred ccccccccEEEEeCCC---ccccccccccCCCcccceeccccccc-------hhhHhHhhhHHHHHHHhCCCCccchhhh
Q psy91 146 KVRGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLV 215 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~ 215 (541)
....++..++||+.|. .+.+.+ ++.||+.+...... .......+.+..+++.++..
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~------sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr-------- 393 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR-------- 393 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCc------cHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--------
Confidence 2234456789999874 677888 99999988743311 11122222222222222211
Q ss_pred hhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC
Q psy91 216 NSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295 (541)
Q Consensus 216 ~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ 295 (541)
.--.......
T Consensus 394 ----------------------------------------------------------------------~~~~~~~a~~ 403 (501)
T COG3845 394 ----------------------------------------------------------------------APSPDAPARS 403 (501)
T ss_pred ----------------------------------------------------------------------CCCCCcchhh
Confidence 0011223556
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+|||.+|++-+++.+.. +|+|+|+..|+.|-++.... .+.+.|.++.+.+..+++.+.++| +
T Consensus 404 LSGGNqQK~IlaREl~~------~p~lLI~~qPTrGLDvgA~~-----------~I~~~l~e~r~~G~AVLLiS~dLD-E 465 (501)
T COG3845 404 LSGGNQQKLILARELAR------RPDLLIAAQPTRGLDVGAIE-----------FIHERLLELRDAGKAVLLISEDLD-E 465 (501)
T ss_pred cCCcceehhhhhhhhcc------CCCEEEEcCCCccccHHHHH-----------HHHHHHHHHHhcCCEEEEEehhHH-H
Confidence 89999999999999888 99999999999998877653 455667777888888888775555 2
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
-..++.|+.++
T Consensus 466 il~lsDrIaVi 476 (501)
T COG3845 466 ILELSDRIAVI 476 (501)
T ss_pred HHHhhheeeee
Confidence 24678887766
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.8e-09 Score=99.64 Aligned_cols=138 Identities=26% Similarity=0.522 Sum_probs=107.4
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc--CcceeeccccchhhhhcccceeEEEcCCCCC
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--GKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 392 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--~rt~~i~~~~~di~~~~l~~rvnvIpvi~k~ 392 (541)
+.|+.++|+.+.|-|.|.+. .|+..|..-|..+... -.++....+..++.+..+.++++++++.|+|
T Consensus 38 ~~GF~FNilCvGETg~GKsT-----------LmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKST-----------LMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred hcCceEEEEEeccCCccHHH-----------HHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 46889999999999999753 3444555545444322 2355666778999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhccCccccccccc--ccchhhh---------------------hhhccC--CCCccccc
Q psy91 393 DSINSEESWRACCSYIDDQFRQYFNDESGLNRKN--IVDNRFA---------------------TNRHRN--NAPTPSQV 447 (541)
Q Consensus 393 D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~--i~d~~v~---------------------~~~~~~--~~p~~vev 447 (541)
|.++.++.+++|.+|||.||+.|+.+|.++.|.- ..|.||| +.+..+ ++|+++..
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKa 186 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKA 186 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhhhhHHHHHHh
Confidence 9999999999999999999999999999887753 4577777 334444 88988888
Q ss_pred CCCCcccHHHHHHHHh
Q psy91 448 ENPKHSDFNKLRNMLI 463 (541)
Q Consensus 448 en~~h~DF~~Lr~~L~ 463 (541)
+--..++...++.-++
T Consensus 187 DtisK~eL~~FK~kim 202 (406)
T KOG3859|consen 187 DTISKEELKRFKIKIM 202 (406)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 8777777777776554
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=93.44 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKK 370 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~ 370 (541)
.....|.||+++|+|..-+.. +++++++||-+.-.++-. ...+.+||++|... +-|++..+|
T Consensus 144 RmHkvSDGqrRRVQicMGLL~------PfkVLLLDEVTVDLDVlA-----------RadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 144 RMHKVSDGQRRRVQICMGLLK------PFKVLLLDEVTVDLDVLA-----------RADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred EEeeccccchhhhHHHHhccc------ceeEEEeeeeEeehHHHH-----------HHHHHHHHHHHHhhcCcEEEEEee
Confidence 345689999999999999988 999999999876433222 22678899999765 556777888
Q ss_pred cchhhh
Q psy91 371 SMDIEE 376 (541)
Q Consensus 371 ~~di~~ 376 (541)
-.|-.+
T Consensus 207 IFDGLe 212 (291)
T KOG2355|consen 207 IFDGLE 212 (291)
T ss_pred eccchh
Confidence 777443
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-08 Score=111.95 Aligned_cols=92 Identities=10% Similarity=0.145 Sum_probs=68.0
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee---eEEEEcCCCCCCCccchhhhhhhhhhhhhhhh
Q psy91 276 STLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL---RLTVVDTPGFGDSINSEESWRACCSYIDDQFR 352 (541)
Q Consensus 276 sT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~---~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~ 352 (541)
-.+++.+.+..+..++.+..+|+|++|++.|+++++. ++ .++|+|||..|.+..... .+.
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~------~p~~~~llILDEPtsGLD~~~~~-----------~L~ 873 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK------RSTGKTLYILDEPTTGLHFEDIR-----------KLL 873 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhc------CCCCCeEEEEECCCCCCCHHHHH-----------HHH
Confidence 3455555655444567788999999999999999887 67 899999998887655443 566
Q ss_pred hhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 353 QYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 353 ~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++|.+..+.+.++++.+|++++.. ...++.++
T Consensus 874 ~~L~~l~~~G~TVIiitH~~~~i~--~aD~ii~L 905 (943)
T PRK00349 874 EVLHRLVDKGNTVVVIEHNLDVIK--TADWIIDL 905 (943)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHH--hCCEEEEe
Confidence 667666666889999999987653 34454444
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-08 Score=115.91 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=66.4
Q ss_pred HHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 277 TLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 277 T~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
.++..+.+..+..++....+|+|++|++.|+++++. +..++.++|+|||..|.+..... ++.++|.
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~---~~~~p~llILDEPtsgLD~~~~~-----------~L~~~L~ 875 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK---RSTGRTLYILDEPTTGLHFDDIK-----------KLLEVLQ 875 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhh---cCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHH
Confidence 345555554433466778899999999999998864 11147999999998887765543 5666666
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+....+.++++.+|++++.. ...++.++
T Consensus 876 ~l~~~G~TVIvi~H~~~~i~--~aD~ii~L 903 (924)
T TIGR00630 876 RLVDQGNTVVVIEHNLDVIK--TADYIIDL 903 (924)
T ss_pred HHHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 66656889999999988653 34555554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=87.71 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=78.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhh
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRAC 343 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i 343 (541)
.+.++|+|++|||||||+|++..- ....|..+.+|-.|.-..+. -.+.++|-||||.+.-....
T Consensus 26 EIaF~GRSNVGKSSlIN~l~~~k~-----LArtSktPGrTq~iNff~~~-------~~~~lVDlPGYGyAkv~k~~---- 89 (200)
T COG0218 26 EIAFAGRSNVGKSSLINALTNQKN-----LARTSKTPGRTQLINFFEVD-------DELRLVDLPGYGYAKVPKEV---- 89 (200)
T ss_pred EEEEEccCcccHHHHHHHHhCCcc-----eeecCCCCCccceeEEEEec-------CcEEEEeCCCcccccCCHHH----
Confidence 578899999999999999998552 23456667777777766544 34899999999998544321
Q ss_pred hhhhhhhhhhhhhhhcccCcceeecc--c---cchhhhhc--ccceeEEEcCCCCCCCCCcHHH
Q psy91 344 CSYIDDQFRQYFNDENRQGKTTTIEK--K---SMDIEERG--VKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 344 ~~yI~~~~~~~l~~e~~~~rt~~i~~--~---~~di~~~~--l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
.+.....+.+||........-+.+.. | +.|.+.-. ....+.++-+..|+|.++..+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 22222355667766555444333221 2 23333211 3445566666889999998775
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.4e-08 Score=102.01 Aligned_cols=81 Identities=22% Similarity=0.181 Sum_probs=59.1
Q ss_pred ceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccccc
Q psy91 79 YIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 79 ~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.|.++|+..-.+. ..++..++|.| .|+||||||||+|+|+|.|...- .+|. .. . .+.
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-------y~g~----L~--~---P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-------YNGL----LS--I---PRP 544 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-------cCCe----ee--c---CCC
Confidence 5788888877664 44778899999 89999999999999999776443 3454 11 0 112
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecc
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
.++-|++|.+.+- .| |.+|.+.++
T Consensus 545 ~~mFYIPQRPYms---~g----tlRDQIIYP 568 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS---GG----TLRDQIIYP 568 (728)
T ss_pred cceEeccCCCccC---cC----cccceeecC
Confidence 3478999987765 34 788888887
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-07 Score=99.95 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=36.5
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCC-CeeecccCCccc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYG-DRKVPNVNGSNT 138 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G-~i~~~~~~G~~~ 138 (541)
..+|++||+++ +|+|||||||||||+.....+..| +|. ++|+.+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~---ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFF---LDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEE---ECCEEC
Confidence 35899999998 999999999999999445667777 699 888733
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-07 Score=94.00 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC-CCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceee
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG-DSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTI 367 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G-d~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i 367 (541)
.+.+..+|.||+.+..|++.... .++++++|+-+.- |..... ....-+.+..+ .+.|.++
T Consensus 502 Rr~f~ELStGQKeR~KLAkllae------rpn~~~iDEF~AhLD~~TA~------------rVArkiselaRe~giTliv 563 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLLAE------RPNVLLIDEFAAHLDELTAV------------RVARKISELAREAGITLIV 563 (593)
T ss_pred hccHhhcCcchHHHHHHHHHHhc------CCCcEEhhhhhhhcCHHHHH------------HHHHHHHHHHHHhCCeEEE
Confidence 34567799999999999999888 8999999997443 222111 23333444433 3667777
Q ss_pred ccccchhh
Q psy91 368 EKKSMDIE 375 (541)
Q Consensus 368 ~~~~~di~ 375 (541)
.+|..|+.
T Consensus 564 vThrpEv~ 571 (593)
T COG2401 564 VTHRPEVG 571 (593)
T ss_pred EecCHHHH
Confidence 77776654
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.2e-06 Score=79.41 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=39.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
++|+++|.+|+||||++|++.+.+.+..... .....+........+. ...++|+||||++|...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~---~~~~t~~~~~~~~~~~------g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSS---AKSVTQECQKYSGEVD------GRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TT---TSS--SS-EEEEEEET------TEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccc---cCCcccccceeeeeec------ceEEEEEeCCCCCCCcc
Confidence 4799999999999999999988775432210 0112233333333333 47789999999987654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.2e-05 Score=80.24 Aligned_cols=64 Identities=27% Similarity=0.421 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.+++.++|.+|+|||||+|.|+..+...... . .. .........++.+| .++.++||||..+...
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---~---~g--tt~~~~~~~~~~~~--~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---I---AG--TTRDSIDIPFERNG--KKYLLIDTAGIRRKGK 235 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---C---CC--ceECcEeEEEEECC--cEEEEEECCCcccccc
Confidence 4789999999999999999998765221111 1 11 12222222333344 3789999999876543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-06 Score=84.91 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=38.2
Q ss_pred hhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC-CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ-GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 258 k~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~-~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++..++|.|+|++|+|||||||.|.+-.. .....+..|. ..|.....+... --++++++|-||.|-.
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~---~d~~aA~tGv~etT~~~~~Y~~p-----~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGH---EDEGAAPTGVVETTMEPTPYPHP-----KFPNVTLWDLPGIGTP 99 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--T---TSTTS--SSSHSCCTS-EEEE-S-----S-TTEEEEEE--GGGS
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCC---CCcCcCCCCCCcCCCCCeeCCCC-----CCCCCeEEeCCCCCCC
Confidence 356778999999999999999999986431 1122222232 223333333321 1367999999999954
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=87.25 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=39.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~ 122 (541)
.-|.++|.+.+-.++.++.+.|+.| ++|||||-||||||+-|+.+
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhh
Confidence 4578888888888899999999999 99999999999999999543
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-06 Score=83.04 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=44.0
Q ss_pred hhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 258 k~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.....++++++|.+|+|||||+|+|++........ . ...+..+... ....+| .++.|+||||+++..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~---~---~~~T~~~~~~--~~~~~g--~~i~vIDTPGl~~~~ 93 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA---F---QSETLRVREV--SGTVDG--FKLNIIDTPGLLESV 93 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC---C---CCceEEEEEE--EEEECC--eEEEEEECCCcCcch
Confidence 34567899999999999999999999876322111 1 1122222222 222333 578999999999874
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-06 Score=85.79 Aligned_cols=107 Identities=42% Similarity=0.782 Sum_probs=78.7
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc--------ccCcceeeccccchhhhhcccceeEEEc
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN--------RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~--------~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|+.++|+++..+|.|++. +|+..|...+.... ....++.+..+...++..+...++++||
T Consensus 1 ~g~~f~I~vvG~sg~GKST-----------liN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiD 69 (276)
T cd01850 1 KGFQFNIMVVGESGLGKST-----------FINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVID 69 (276)
T ss_pred CCcEEEEEEEcCCCCCHHH-----------HHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEe
Confidence 4789999999999999752 22222332222211 1234444555555666667888999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCccccccc-ccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNR-KNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~-~~i~d~~v~ 433 (541)
++|++|.++++++|++|++||++||..|+.++....+ ..+.|+++|
T Consensus 70 TpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh 116 (276)
T cd01850 70 TPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVH 116 (276)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceE
Confidence 9999999999999999999999999999988887776 556676665
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-06 Score=81.87 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCcceEEeee----EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-C-c
Q psy91 290 DRKVPNVNDRQGKTTTIEKK----SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-G-K 363 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~----~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~-r 363 (541)
+..+..+|+|++|++.++.. .+. +++++|+|||..|-+..... ++.+.+.+..+. + .
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~------~p~llllDEP~~~LD~~~~~-----------~i~~~l~~~~~~~g~~ 183 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELT------RCPFRVVDEINQGMDPTNER-----------KVFDMLVETACKEGTS 183 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhcc------CCCEEEEecccccCCHHHHH-----------HHHHHHHHHhhcCCCc
Confidence 33456789999987665532 234 78999999998776655443 555666555444 3 4
Q ss_pred ceeeccccch
Q psy91 364 TTTIEKKSMD 373 (541)
Q Consensus 364 t~~i~~~~~d 373 (541)
++++.+|++.
T Consensus 184 ~viiith~~~ 193 (213)
T cd03277 184 QYFLITPKLL 193 (213)
T ss_pred eEEEEchhhc
Confidence 5777777654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.1e-05 Score=80.06 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=39.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+++.++|.+|+|||||+|+|...+...... ...+........+..+ ...+.++||||..+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~--------~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSD--------IAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKG 235 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecC--------CCCceEEEEEEEEEEC--CeeEEEEECCCCCCCc
Confidence 5789999999999999999998765221111 1112222222222233 3567899999987653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.5e-06 Score=78.16 Aligned_cols=64 Identities=30% Similarity=0.453 Sum_probs=41.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
++++++|.+|+||||++|+|++......... ..+..+.+......+. ..++.|+||||+++...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~---~~~~T~~~~~~~~~~~------~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS---ASSVTKTCQKESAVWD------GRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC---CCCcccccceeeEEEC------CeEEEEEECcCCCCccC
Confidence 3689999999999999999998764321110 0112222222222222 45899999999998754
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=88.91 Aligned_cols=61 Identities=33% Similarity=0.395 Sum_probs=37.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++.++|.+++|||||+|.|....... . +.. ..++..+.....+-++ ..+.++||||+...
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~i---v---~~~--pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~ 336 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAV---V---EDT--PGVTRDRVSYDAEWAG--TDFKLVDTGGWEAD 336 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee---e---cCC--CCeeEEEEEEEEEECC--EEEEEEeCCCcCCC
Confidence 468999999999999999998653110 0 111 1122222222222233 46788999998753
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.3e-05 Score=73.83 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=37.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.+.++|.+|+|||||+|+|++........+. .+....+.. ...+. . +....+.++||||+|+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~--~~~~~~t~~--~~~~~--~-~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAP--TGVVETTMK--RTPYP--H-PKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccc--cCccccccC--ceeee--c-CCCCCceEEeCCCCCccc
Confidence 56889999999999999999875421111111 111111111 11111 1 113579999999999753
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.8e-06 Score=76.41 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=34.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.+++|.||+|||||||.|..........+....+.-++|+. .+.++.+ .-.-.|+|||||.+-
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt-~~~l~~l-----~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT-HRELFPL-----PDGGYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S---------------SEEEEEE-----TTSEEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC-CeeEEec-----CCCcEEEECCCCCcc
Confidence 678899999999999999998754443333333333344433 2333333 224589999998643
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=88.72 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=62.9
Q ss_pred cccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC
Q psy91 283 FLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362 (541)
Q Consensus 283 ~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~ 362 (541)
.+..+-.-++...+|||+.||+.++..+.. .+..-.|.|+|||+.|.-...-. ++.+.|......+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k---~~tg~TlYiLDEPTTGLH~~Di~-----------kLl~VL~rLvd~G 875 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSK---RSTGKTLYILDEPTTGLHFDDIK-----------KLLEVLHRLVDKG 875 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhh---ccCCCeEEEeCCCCCCCCHHHHH-----------HHHHHHHHHHhCC
Confidence 344434456677899999999999877543 44456899999999997654432 5667777778889
Q ss_pred cceeeccccchhhhhcccceeEEEc
Q psy91 363 KTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 363 rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.|+++.-|.+|+.. ..=+|||
T Consensus 876 nTViVIEHNLdVIk----~AD~IID 896 (935)
T COG0178 876 NTVIVIEHNLDVIK----TADWIID 896 (935)
T ss_pred CEEEEEecccceEe----ecCEEEE
Confidence 99999999988643 2235565
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=74.47 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=50.4
Q ss_pred CCCeeEeeccc--hh------hhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 240 YSDIGFATLPE--QV------HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 240 ~~~vG~~~~~~--q~------~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
++-+||...|. |- .+...++--.++|+++|.+|+||||++|+|++........ -...+..... .
T Consensus 8 ~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~------f~s~t~~~~~--~ 79 (313)
T TIGR00991 8 REWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA------FQSEGLRPMM--V 79 (313)
T ss_pred cceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC------CCCcceeEEE--E
Confidence 45577776665 22 1112233356899999999999999999999876322111 1111111111 1
Q ss_pred EeeecCeeeeEEEEcCCCCCCC
Q psy91 312 DIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
....+ ..++.|+||||+.+.
T Consensus 80 ~~~~~--G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 80 SRTRA--GFTLNIIDTPGLIEG 99 (313)
T ss_pred EEEEC--CeEEEEEECCCCCch
Confidence 11123 467999999999875
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.6e-05 Score=84.45 Aligned_cols=84 Identities=20% Similarity=0.069 Sum_probs=54.1
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+..++++..|. +..+++.++ .| +|+|||||||||||++|++ .++.|.+...+..|+.+..........
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 4678888888885 456788875 66 9999999999999999954 345666662212344221111111112
Q ss_pred cccccEEEEeCCCc
Q psy91 149 GRQYPWGVVEGSTV 162 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~ 162 (541)
.+++.+++|+|.+.
T Consensus 217 ~r~rtI~vV~qsd~ 230 (450)
T PRK06002 217 NLKKAVAVVATSDE 230 (450)
T ss_pred hhCCeEEEEEcCCC
Confidence 24567899999763
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1e-05 Score=98.01 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=65.2
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+..+-..+....+|||+.||+.++..+.. +.....|.|+|||+.|....... ++.+.|+.
T Consensus 1682 ~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~---~~~~~~lyilDEPt~GLh~~d~~-----------~Ll~~l~~ 1747 (1809)
T PRK00635 1682 ALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYL---PPKHPTLFLLDEIATSLDNQQKS-----------ALLVQLRT 1747 (1809)
T ss_pred HHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhc---CCCCCcEEEEcCCCCCCCHHHHH-----------HHHHHHHH
Confidence 44445666655677788999999999999987743 21236899999998887654432 67777888
Q ss_pred hcccCcceeeccccchhhhh
Q psy91 358 ENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~ 377 (541)
....+.|+++..|++|+...
T Consensus 1748 L~~~g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1748 LVSLGHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred HHhcCCeEEEEeCCHHHHHh
Confidence 88889999999999887653
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.5e-05 Score=66.79 Aligned_cols=62 Identities=29% Similarity=0.462 Sum_probs=37.6
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
++++|.+|+|||||+|.|+...... .+.....|.......+.+ + ...+.++||||+.+....
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~------~~~~~~~T~~~~~~~~~~--~--~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAK------VSNIPGTTRDPVYGQFEY--N--NKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSE------ESSSTTSSSSEEEEEEEE--T--TEEEEEEESSSCSSSSHH
T ss_pred EEEECCCCCCHHHHHHHHhcccccc------ccccccceeeeeeeeeee--c--eeeEEEEeCCCCcccchh
Confidence 6899999999999999999754211 111122222221111111 2 455689999999876443
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=68.27 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=40.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.++++++|.+|+|||||+|.|+...... ..+.....|..+... .++ ..+.++||||+++...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~--~~~-----~~~~liDtpG~~~~~~ 79 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLA-----RTSKTPGRTQLINFF--EVN-----DGFRLVDLPGYGYAKV 79 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcc-----cccCCCCcceEEEEE--EeC-----CcEEEEeCCCCccccC
Confidence 3578999999999999999998764211 112222334333322 221 2689999999987643
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.5e-05 Score=73.11 Aligned_cols=61 Identities=28% Similarity=0.389 Sum_probs=37.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCC--CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDR--KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~--~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+++++|.+|+|||||||+|+.......+ .....|....-|.... .+.+. -.+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~-----~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI--KIPLG-----NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE--EEecC-----CCCEEEeCcCC
Confidence 37899999999999999999986643321 1112222222333332 22221 16899999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.8e-05 Score=59.37 Aligned_cols=17 Identities=41% Similarity=0.858 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|.|||||||||||+++
T Consensus 27 li~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 27 LITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999999
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=65.02 Aligned_cols=59 Identities=29% Similarity=0.491 Sum_probs=37.1
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
+.++|.+|+|||||+|+|........ .++....+..+.. +.+ ...+.++|+||+|+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~-----~~~~~~~t~~~~~--~~~-----~~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR-----TSKTPGKTQLINF--FNV-----NDKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee-----ecCCCCcceeEEE--EEc-----cCeEEEecCCCcccccc
Confidence 57899999999999999985332221 1222222222222 221 22899999999998744
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=78.75 Aligned_cols=64 Identities=30% Similarity=0.505 Sum_probs=42.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.++++++|.+|+||||++|+|++...+... .....|..+..... ..+ ...+.|+||||+++..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vs------s~~~~TTr~~ei~~--~id--G~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTD------AFGMGTTSVQEIEG--LVQ--GVKIRVIDTPGLKSSA 180 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccccc------CCCCCceEEEEEEE--EEC--CceEEEEECCCCCccc
Confidence 4568999999999999999999987633221 11122333322221 123 3679999999999874
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.58 E-value=3.7e-05 Score=77.00 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=38.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccccc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSL 167 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~l 167 (541)
.++|+||||||||||+++|++ .+..|++. ++|+.+.. .+. .......+++++|.. +.+..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~---~~g~~v~~-~d~--~~ei~~~~~~~~q~~-~~~r~ 174 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLG---LRGKKVGI-VDE--RSEIAGCVNGVPQHD-VGIRT 174 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEE---ECCEEeec-chh--HHHHHHHhccccccc-ccccc
Confidence 459999999999999999944 56678999 88874321 111 112223456777743 33344
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=7e-05 Score=72.81 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccc-hhhhhhhhhccceeeEeccCCcchh
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGK 275 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~sg~GK 275 (541)
.+.++|.+||||||+++.++|+..+..+.+...+.........+||++|.+ .++.+|+.+|+.|.+.+.|.+...+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 356799999999999999999999998887655555456778899999998 9999999999999999888544433
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=76.21 Aligned_cols=63 Identities=33% Similarity=0.471 Sum_probs=39.3
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++|.||+|||||||.|..........++...+..++|+. ...++.+..+| .|+||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~-~~~l~~l~~g~-----~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTR-HVELFELPNGG-----LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCc-eeEEEECCCCc-----EEEeCCCccc
Confidence 378999999999999999987653333333332333333332 22344433332 7999999963
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0002 Score=72.26 Aligned_cols=57 Identities=30% Similarity=0.357 Sum_probs=36.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+||||++|+|.......... .. ..|... ..+.+ ...+.|+||||+.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~---g~T~~~--~~~~~-----~~~~~l~DtPG~~ 174 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RP---GVTKGQ--QWIKL-----SDGLELLDTPGIL 174 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC---CC---Ceecce--EEEEe-----CCCEEEEECCCcc
Confidence 4689999999999999999998654222111 11 112221 22222 2368999999993
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00038 Score=73.05 Aligned_cols=62 Identities=19% Similarity=0.398 Sum_probs=39.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.+.++|.+++|||||+|.|.+.+..-- .+..| .+.+.....++-+ .-++.++||.|.-..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv---~~~aG-----TTRD~I~~~~e~~--~~~~~liDTAGiRrk 239 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIV---SDIAG-----TTRDSIDIEFERD--GRKYVLIDTAGIRRK 239 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEe---cCCCC-----ccccceeeeEEEC--CeEEEEEECCCCCcc
Confidence 46788999999999999999987763221 11111 2223333333333 356889999988654
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=73.47 Aligned_cols=63 Identities=32% Similarity=0.477 Sum_probs=39.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
...++|.||+|||||||.|..........+..-.+.-++|+. .+.++.+..+| .|+|||||..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt-~~~l~~l~~gG-----~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT-HVELFPLPGGG-----WIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc-eEEEEEcCCCC-----EEEeCCCCCc
Confidence 456789999999999999987543333333333333444443 33344433344 7999999953
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=75.78 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=40.5
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+++|.||+|||||||.|..........++...+..++|+ -.+.++.+..+ ..|+||||+-.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT-~~~~l~~l~~~-----~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTT-TAARLYHFPHG-----GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCce-eeEEEEEecCC-----CEEEECCCCCc
Confidence 46899999999999999998765444333333333334433 23444444333 35999999864
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=6.8e-05 Score=70.96 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy91 102 LMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
++|+||||||||||+++|++..
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 3899999999999999996543
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=70.99 Aligned_cols=62 Identities=29% Similarity=0.398 Sum_probs=38.8
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+++|.||+|||||||.|..........++..++..+.|+ ....++.+ .+| .|+||||+-.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT-~~~~l~~l-~~~-----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTT-THVELFHF-HGG-----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcC-CceEEEEc-CCc-----EEEeCCCccc
Confidence 57899999999999999998765333333333233223322 22333443 233 7999999964
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.45 E-value=9e-05 Score=71.96 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=42.9
Q ss_pred cceeecceEEE-----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccc
Q psy91 92 KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPS 166 (541)
Q Consensus 92 ~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~ 166 (541)
..+.+++++++ +|+|||||||||||+++++...-| ..|. ........++++.| ++++
T Consensus 18 ~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~------~~g~---------~vp~~~~~i~~~~~---i~~~ 79 (216)
T cd03284 18 PFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLA------QIGS---------FVPASKAEIGVVDR---IFTR 79 (216)
T ss_pred ceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHh------ccCC---------eeccccceecceee---Eecc
Confidence 34777777764 999999999999999994321110 1122 11122335666654 5677
Q ss_pred cccccCCCcccceecc
Q psy91 167 LIGSLFQTDRDYIGFA 182 (541)
Q Consensus 167 lig~~~qtv~e~l~~~ 182 (541)
+ ++.+++..+
T Consensus 80 ~------~~~~~ls~g 89 (216)
T cd03284 80 I------GASDDLAGG 89 (216)
T ss_pred C------CchhhhccC
Confidence 7 888888766
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00018 Score=64.88 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=35.7
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++|.+|+||||++|+|....... .+.....+.... .+.+ ...+.|+||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~------~~~~~~~~~~~~--~~~~-----~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS------VSATPGKTKHFQ--TIFL-----TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee------eCCCCCcccceE--EEEe-----CCCEEEEECCCcC
Confidence 78999999999999999998765321 111122222222 2222 1268999999985
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00046 Score=62.88 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=39.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.+.++|.+|+|||||+|+|..... ... ...+.........+..++...++.++|+||.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQ--------YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-Ccc--------CCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 3688999999999999999987652 211 1122333333333344566788999999985
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00097 Score=76.18 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=36.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++.++|.+|+|||||+|.|...+... +.. -...|.......+. -+| .++.++||||....
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~---v~~---~~gtT~d~~~~~~~--~~~--~~~~liDTaG~~~~ 511 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAV---VND---LAGTTRDPVDEIVE--IDG--EDWLFIDTAGIKRR 511 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc---cCC---CCCCCcCcceeEEE--ECC--CEEEEEECCCcccC
Confidence 689999999999999999998765211 011 11112222222222 233 34678999998643
|
|
| >PRK11545 gntK gluconate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=3e-05 Score=71.83 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.4
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 105 VGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 105 iGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
||+||||||||+++|++.. |.++ ++|.
T Consensus 1 ~G~sGsGKSTla~~la~~l--~~~~---~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL--HAAF---LDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh--CCeE---EeCc
Confidence 6999999999999995543 5566 6665
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=97.35 E-value=7.1e-05 Score=70.41 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred EeccCCcchhHHHHhhhccc----ccC----------C-------------------------CCCCCCCCCCCCcceEE
Q psy91 266 MVVGESGLGKSTLVNSLFLS----DLY----------G-------------------------DRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 266 mv~G~sg~GKsT~in~L~~~----~~~----------~-------------------------~~~~~~ls~g~~q~v~I 306 (541)
+++|++|+|||+++..++.. ... . ....+-+|+|+++++.+
T Consensus 26 ~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r~~L 105 (178)
T cd03239 26 AIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSLSAL 105 (178)
T ss_pred EEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHHHHH
Confidence 48899999999999997321 000 0 00011257788888888
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++... --+++++++|||..|-+..+.. .+.+.|.+..+.+.++++.+|+.++.. ...++..|
T Consensus 106 aral~~~~--~~~p~llilDEp~~~LD~~~~~-----------~i~~~L~~~~~~g~tiIiiSH~~~~~~--~adrvi~i 170 (178)
T cd03239 106 ALIFALQE--IKPSPFYVLDEIDAALDPTNRR-----------RVSDMIKEMAKHTSQFIVITLKKEMFE--NADKLIGV 170 (178)
T ss_pred HHHHHHhc--CCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEECCHHHHh--hCCeEEEE
Confidence 77653100 0168999999997776555443 455556555444678889999876543 45566555
Q ss_pred cC
Q psy91 387 DT 388 (541)
Q Consensus 387 pv 388 (541)
..
T Consensus 171 ~~ 172 (178)
T cd03239 171 LF 172 (178)
T ss_pred EE
Confidence 43
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=4.2e-05 Score=71.80 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
+|+||||||||||+++|++.... +. ++|.
T Consensus 7 ~l~G~sGsGKSTl~~~la~~l~~--~~---i~gd 35 (176)
T PRK09825 7 ILMGVSGSGKSLIGSKIAALFSA--KF---IDGD 35 (176)
T ss_pred EEECCCCCCHHHHHHHHHHhcCC--EE---ECCc
Confidence 89999999999999999654332 45 6666
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00059 Score=61.26 Aligned_cols=59 Identities=29% Similarity=0.487 Sum_probs=41.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++++++|.+|+|||||+|.|+....... ...+.........+.-.+....+.++|+||.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN---------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ 59 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc---------cCCceeeeeEEEEEEECCEEEEEEEEecCCh
Confidence 4689999999999999999987653221 1223344444444444456788999999996
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00031 Score=64.46 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.++++++|.+|+|||||+|+|....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4688999999999999999998654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00093 Score=60.48 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=37.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
+.+.++|.+|+|||||+|.|.......... ....+........ ......+.++||||+++...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSP------KPQTTRNRIRGIY----TDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccC------CCCceeceEEEEE----EcCCeEEEEEECCCCCcchH
Confidence 568899999999999999998654211110 0011111111111 11146799999999986543
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=97.31 E-value=4.4e-05 Score=70.63 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=64.0
Q ss_pred eEeccCCcchhHHHHhhhcccccCCC-----------------------CCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGD-----------------------RKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~-----------------------~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
..++|.+|.|||++++++........ .....+|+|+++++.+++++..... -++.
T Consensus 24 ~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~--~~~~ 101 (162)
T cd03227 24 TIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASL--KPRP 101 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCC--CCCC
Confidence 57899999999999999643211111 0112467788888888776642100 1579
Q ss_pred EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 322 LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 322 L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++++|||+.|-+..... .+.+.+.+..+.+.++++.+|+.++..
T Consensus 102 llllDEp~~gld~~~~~-----------~l~~~l~~~~~~~~~vii~TH~~~~~~ 145 (162)
T cd03227 102 LYILDEIDRGLDPRDGQ-----------ALAEAILEHLVKGAQVIVITHLPELAE 145 (162)
T ss_pred EEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 99999998887655543 233333333222678888999888765
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00069 Score=61.74 Aligned_cols=59 Identities=29% Similarity=0.554 Sum_probs=40.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|++|+|||||++.|..... .. ....++........+.-++...++.++|+||.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SE--------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC--------CCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 4689999999999999999986652 11 11223333333334444565678999999994
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00067 Score=62.32 Aligned_cols=60 Identities=27% Similarity=0.536 Sum_probs=38.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|+++++|.+|+|||||+++|.... +... ...+..+......+.-++....+.|+|+||.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSER--------QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-Cccc--------CCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 4789999999999999999986543 2111 1122222222223333555678999999994
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00053 Score=68.27 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=37.9
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.++|++++|||||+|.|.+..+.-- |...+.|-...+..+. .+ +.+++++||||+-..
T Consensus 9 VaIiGrPNvGKSTLlN~l~G~KisIv------S~k~QTTR~~I~GI~t---~~-~~QiIfvDTPGih~p 67 (298)
T COG1159 9 VAIIGRPNVGKSTLLNALVGQKISIV------SPKPQTTRNRIRGIVT---TD-NAQIIFVDTPGIHKP 67 (298)
T ss_pred EEEEcCCCCcHHHHHHHHhcCceEee------cCCcchhhhheeEEEE---cC-CceEEEEeCCCCCCc
Confidence 45799999999999999998874321 2111111111111111 11 789999999999766
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00071 Score=61.78 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=40.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+++.++|.+|+|||||+|+|+..... ... ..++.+......+.-+|....+.++||||.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKY--------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCC--------CCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence 36889999999999999999876532 111 123333332223334466889999999996
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00025 Score=69.77 Aligned_cols=66 Identities=30% Similarity=0.472 Sum_probs=39.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
..|++++|.+|+|||++||.||..+...-...+. + +.+...... .-+ .-.|+|.|+||+||.....
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~---~----t~~~~~~~~-~~~--~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV---G----TDITTRLRL-SYD--GENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeeccc---C----CCchhhHHh-hcc--ccceEEecCCCcccchhhh
Confidence 3588999999999999999999654222111110 1 111111100 001 2468999999999976554
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00087 Score=61.42 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+|+|||||++.|........ . ..+.........+.-+|...++.++|+||.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 62 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-S--------KSTIGVEFATRSIQIDGKTIKAQIWDTAGQ 62 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-C--------CCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 36899999999999999999986552211 1 122223223333444566788999999984
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00033 Score=66.31 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
++|+||||||||||+++|++ .+..|.|.
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ 57 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPPDERIIT 57 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 49999999999999999944 34455555
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00042 Score=72.46 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCCceeeecccccccc-cceee-----------cceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 76 DRDYIGFATLPEQVHR-KSVKK-----------GFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-~~iL~-----------~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
....+.|++|++.|++ +.+|. |+.+.| +|+||+|||||||++.|+.
T Consensus 127 ~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 127 AKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred cCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence 3457999999999975 45786 777777 9999999999999999944
|
Members of this family differ in the specificity of RNA binding. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=60.66 Aligned_cols=60 Identities=20% Similarity=0.414 Sum_probs=38.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++.++++|.+|+|||||+|+|.......... ......+.... +.-++...++.|+|+||.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~~~~~~~~~--v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQE-------STIGAAFLTQT--VNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------CccceeEEEEE--EEECCEEEEEEEEeCCch
Confidence 3679999999999999999998766322111 11111122222 223455788999999984
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=62.54 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
-.++.++|.+|+|||||+|+|+....... .+.....+..+... . +..++.|+||||++...
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~-----~~~~~~~t~~~~~~--~-----~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLAR-----TSKTPGRTQLINFF--E-----VNDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCccc-----ccCCCCceeEEEEE--e-----cCCeEEEeCCCCCCCcC
Confidence 35789999999999999999987542211 11112223222221 1 13689999999988643
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00084 Score=62.67 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=37.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCC-------CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN-------VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~-------ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++++|..|+|||||+|.|............. ......+.+.+......++-. ...+.++||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHH
Confidence 47899999999999999998765322111000 000011122222222222222 56899999999763
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=60.98 Aligned_cols=59 Identities=31% Similarity=0.441 Sum_probs=38.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|+++++|.+|+|||||++.+..... .... ..+..+......+.-+|...++.|+|+||.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESY--------ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCC--------CCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 6899999999999999999976542 1111 112222222222333466788999999994
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=61.06 Aligned_cols=59 Identities=20% Similarity=0.391 Sum_probs=37.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||+|+|..... ... ...++........+.-++....+.++|+||.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~--------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQ--------YKATIGADFLTKEVTVDDKLVTLQIWDTAGQ 59 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcC--------cCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 4789999999999999999986542 111 1122221111122333455778999999985
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=61.09 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=39.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||++.+........ . ..+.........+.-++....+.|+|+||.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-H--------DLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-C--------CCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 47899999999999999999876542111 1 112222222233344555678999999993
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00076 Score=70.67 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=40.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
-+++++|.+|+|||||||+|........ .....|.....|..+.... + .-.+.|+||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-~~~~~s~~pgtT~~~~~~~--~-----~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-DVITTSPFPGTTLDLIEIP--L-----DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-ceeeecCCCCeEeeEEEEE--e-----CCCCEEEECCCCCCh
Confidence 3789999999999999999987542211 1223343344444433222 1 124689999999864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00058 Score=63.85 Aligned_cols=56 Identities=30% Similarity=0.482 Sum_probs=36.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+++|||||+|.|........ +.....|...... .+ ...+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~------~~~pg~T~~~~~~--~~-----~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV------GATPGVTKSMQEV--HL-----DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee------cCCCCeEcceEEE--Ee-----CCCEEEEECcCC
Confidence 36899999999999999999987652221 1112223222222 11 246899999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0012 Score=60.23 Aligned_cols=59 Identities=29% Similarity=0.474 Sum_probs=38.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++++++|.+|+|||||++.|..... .... ..+.........+.-++...++.++|+||.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 59 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDS--------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCC--------CCceeeeEEEEEEEECCEEEEEEEEECcch
Confidence 4789999999999999999976542 1111 122222222222333455788999999985
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00028 Score=74.64 Aligned_cols=106 Identities=17% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCCCceeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHhcCC--CCCCeeecccCCccceecccc
Q psy91 75 TDRDYIGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~~G~i~~~~~~G~~~~~~~~~ 144 (541)
...|.+++..|++.|.... ++.++++.+ +++|+||+||||+++++.+.. ..|-+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~--------------- 422 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVG--------------- 422 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceee---------------
Confidence 3456899999999997554 889888877 999999999999999995532 332221
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
...+.+++|.+|...-+-.+ +|...-.+.+...+. ..+.+...+..+|+++
T Consensus 423 ---~~~r~ri~~f~Qhhvd~l~~------~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 423 ---RHPRLRIKYFAQHHVDFLDK------NVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG 473 (582)
T ss_pred ---ecccceecchhHhhhhHHHH------HhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc
Confidence 13345689999986655444 443221222111122 3344556788888877
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00097 Score=60.06 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=38.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
+.+.++|.+|+|||||+|+|+.......... ...+..+....+. .. ..++.++||||+++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~------~~~~~~~~~~~~~--~~--~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDI------AGTTRDVIEESID--IG--GIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCC------CCCccceEEEEEE--eC--CEEEEEEECCCcCCCcc
Confidence 3688999999999999999987652111111 1112222222222 12 35789999999986543
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00022 Score=75.78 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=48.2
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeee--cccCCccceecccc-c-ccccccccEEEEeCCC
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKV--PNVNGSNTVIEVAG-T-KVRGRQYPWGVVEGST 161 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~--~~~~G~~~~~~~~~-~-~~~~~~~~~g~V~Q~~ 161 (541)
..+++++ +.+ +|+|+||||||||+++|++......+.+ .+..|..+...... . .....+..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4589999 888 9999999999999999966443322110 00222211000000 0 0011233578889988
Q ss_pred ccccccccccCCCccccee
Q psy91 162 VLTPSLIGSLFQTDRDYIG 180 (541)
Q Consensus 162 ~l~~~lig~~~qtv~e~l~ 180 (541)
..+..+ ++.++..
T Consensus 222 s~~~rl------~a~e~a~ 234 (434)
T PRK07196 222 SPLMRI------KATELCH 234 (434)
T ss_pred ChhhhH------HHHHHHH
Confidence 887777 6665543
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=58.53 Aligned_cols=59 Identities=31% Similarity=0.457 Sum_probs=39.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+++.++|.+|+|||||+|.|.... ..... ..++........+..++....+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY--------KPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC--------CCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 578999999999999999998765 22211 112222222222334555588999999994
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00038 Score=66.64 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=29.1
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhh-hhhhhhcccCcceeeccccchhh
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFR-QYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~-~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+++++++|||+.|-+..... .+. ..+.+..+.+.++++.+|..++.
T Consensus 108 ~p~llllDEp~~glD~~~~~-----------~i~~~~l~~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 108 PDSLVLLDELGSGTDPVEGA-----------ALAIAILEELLERGALVIATTHYGELK 154 (200)
T ss_pred CCcEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEECCHHHHH
Confidence 68899999998886654432 221 22333333467888899875543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00045 Score=66.46 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.5
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHh
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~ 120 (541)
...+++++++++ +|+|||||||||||+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 356889999877 999999999999999994
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=60.80 Aligned_cols=58 Identities=34% Similarity=0.403 Sum_probs=36.1
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++++|.+|+||||++|.|...... .. .....+..+....+. .+ ..++.|+||||+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~-~~------~~~~~t~~~~~~~~~--~~--~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VA------PYPFTTKSLFVGHFD--YK--YLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc-cC------CCCCcccceeEEEEc--cC--ceEEEEEECCCcCC
Confidence 5789999999999999999876421 10 001112222221111 11 46899999999865
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=60.09 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=41.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|.++++|.+|+|||||++.+.... +... ...+..+......+..++-...+.++||||-.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE-FEKK--------YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCC--------CCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999987543 2211 12344444444444556667899999999853
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=61.44 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=40.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCC--C-----CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYG--D-----RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~--~-----~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++.++|..+.|||||++.|....... . ...........+..++..+....+.+ +.+++++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--NRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--CeEEEEEECcCHH
Confidence 3578999999999999999997531000 0 00111111223344555554444433 4578999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00012 Score=73.04 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=57.3
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCC---C---CCCCCCCeeEeeccc-hhhhhhhhhccceeeEec
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNE---K---GSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVV 268 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~---~---~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~ 268 (541)
+++++|.+|+||||++.+|+|++.++.+.|..-+. . .....+.|||++|.+ +++..+|.+|+.|.+-+.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 57789999999999999999999998887643222 1 145667899999999 999999999999988665
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00024 Score=72.83 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC---CCCCCCeeEeeccc-hhhhhhhhhccceeeEeccC
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG---SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGE 270 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~---~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~ 270 (541)
.+.++|.+||||||+++.|+|++.+.++.|..-+... .-..+.||+++|++ .++.+||.+|+.|++.+.|.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~ 105 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV 105 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC
Confidence 3567999999999999999999998888764333222 22357899999999 88999999999999888765
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0019 Score=59.21 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=37.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|.+|+|||||++++.... +.... ..+.........+.-++....+.++||||.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 59 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQ--------LSTYALTLYKHNAKFEGKTILVDFWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCc--------CCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 368999999999999999988654 22111 122222222222223455788999999985
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0015 Score=60.16 Aligned_cols=60 Identities=33% Similarity=0.476 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||++.+..... ..... .+..+......+.-+|....+.++|+||-
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFI--------STIGIDFKIRTIELDGKKIKLQIWDTAGQ 62 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-Ccccc--------cCccceEEEEEEEECCEEEEEEEEeCCch
Confidence 47899999999999999999986552 22111 12222222222334556789999999984
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0011 Score=63.10 Aligned_cols=58 Identities=29% Similarity=0.337 Sum_probs=37.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+.++++|.+|+||||++|.|.... +... ....+.+....+.+ . .+.++||||+|+..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~--------~~~~~t~~~~~~~~-----~-~~~l~Dt~G~~~~~ 66 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVG--------KRPGVTRKPNHYDW-----G-DFILTDLPGFGFMS 66 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccC--------CCCceeeCceEEee-----c-ceEEEeCCcccccc
Confidence 4679999999999999999998654 2111 11122322222221 1 68999999997643
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=64.49 Aligned_cols=60 Identities=30% Similarity=0.424 Sum_probs=36.3
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.++|.+|+|||||+|.|.+.........+ +..+..+... ...+ ..++.++||||+.+..
T Consensus 8 V~iiG~pn~GKSTLin~L~g~~~~~vs~~~-----~tt~~~i~~i---~~~~--~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 8 VAIVGRPNVGKSTLLNALVGQKISIVSPKP-----QTTRHRIRGI---VTED--DAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEECCCCCCHHHHHHHHhCCceeecCCCC-----CcccccEEEE---EEcC--CceEEEEECCCCCCch
Confidence 688999999999999999876532111100 0011111111 1111 3789999999997644
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00046 Score=66.20 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=30.0
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh-hhhhhhhcccCcceeeccccchhhh
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~-~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++.++|+|||+.|-+..... .+ ..++....+.+.++++.+|+.++..
T Consensus 108 ~~~llllDEp~~gld~~~~~-----------~l~~~ll~~l~~~~~~vi~~tH~~~~~~ 155 (202)
T cd03243 108 PRSLVLIDELGRGTSTAEGL-----------AIAYAVLEHLLEKGCRTLFATHFHELAD 155 (202)
T ss_pred CCeEEEEecCCCCCCHHHHH-----------HHHHHHHHHHHhcCCeEEEECChHHHHH
Confidence 58899999998876654332 11 1222222334677888999877665
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0022 Score=58.95 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=38.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|.++++|.+|+|||||+++|..... ..... .++.+......+.-++....+.++|+||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFV--------STVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 6799999999999999999876542 11111 122222222223334556889999999853
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0008 Score=81.14 Aligned_cols=17 Identities=41% Similarity=0.782 Sum_probs=16.5
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||||.+|
T Consensus 27 ~i~G~NGsGKS~ll~ai 43 (1179)
T TIGR02168 27 GIVGPNGCGKSNIVDAI 43 (1179)
T ss_pred EEECCCCCChhHHHHHH
Confidence 99999999999999987
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00016 Score=69.24 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.7
Q ss_pred eEeccCCcchhHHHHhhhc
Q psy91 265 LMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~ 283 (541)
+.+.|++|.|||||++++.
T Consensus 31 ~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 31 LVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6789999999999999987
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=58.26 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=36.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+++.++|.+|+|||||+|+|+...... ...+ ..+..+.... +.-.+....+.++|+||.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~------~~~~~~~~~~--~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHES------TTQASFFQKT--VNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCC------ccceeEEEEE--EEECCEEEEEEEEECCch
Confidence 478999999999999999999765321 1100 0111111222 222355678999999983
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=66.77 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=36.2
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++|.||+|||||+|.|..........++...+..+.|. -....+.+.. ...|+||||+-
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT-~~~~~~~~~~-----~~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTT-THVELYDLPG-----GGLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccc-ccEEEEEcCC-----CcEEEECCCcC
Confidence 57899999999999999998654322222222111222222 1222333222 24899999986
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0025 Score=58.93 Aligned_cols=59 Identities=24% Similarity=0.505 Sum_probs=39.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++++++|.+|+|||||++.+.... +... ...++.+......+.-+|....+.|+|+||.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 61 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPER--------TEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCc--------cccceeEEEEEEEEEECCeEEEEEEEeCCCh
Confidence 679999999999999999997654 2211 1122333222222333555788999999985
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=58.65 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=37.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|.+|+|||||+|.|........ .. .+.........+.-++....+.++|+||.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LA--------ATIGVDFKVKTLTVDGKKVKLAIWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cC--------CcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4689999999999999999986542111 11 11111111112222345678999999994
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00077 Score=71.51 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=27.7
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL 124 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~ 124 (541)
+..+++++ +.+ +|+|+||+||||||++|++...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 34688999 888 9999999999999999965443
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0026 Score=57.88 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=38.8
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE--EeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT--IEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~--I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++|.+|+|||||++.|.......+ ...++. +....+.+...+...++.|+|+||.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD---------YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC---------CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 688999999999999999986542211 112322 2223334443466789999999983
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0025 Score=58.54 Aligned_cols=60 Identities=28% Similarity=0.409 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.+.++|.+|+|||||++.+....+ ....+ .++........+.-++...++.|+|+||.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCP--------HTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCC--------cccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 36889999999999999999986542 22111 12222222222233556788999999984
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0014 Score=59.99 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=35.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..+++++|.+|+||||++|.|....... .+.+..-|..... +.+ ...+.++||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~------~~~~~~~t~~~~~--~~~-----~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLK------VGNVPGTTTSQQE--VKL-----DNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHcccccc------ccCCCCcccceEE--EEe-----cCCEEEEECCCC
Confidence 4578999999999999999998754222 1222222222221 111 356999999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00086 Score=61.98 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.++|+||+|||||||++.|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456799999999999999999654
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.003 Score=58.20 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=40.4
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+..+.++++|.+|+|||||++.+..... .... ..++........+.-++...++.|+|+||.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKF-DTQL--------FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCC-CcCc--------CCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 3457899999999999999999875442 1111 122222222223334566788999999984
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 541 | ||||
| 2qag_A | 361 | Crystal Structure Of Human Septin Trimer 267 Length | 2e-54 | ||
| 2qa5_A | 315 | Crystal Structure Of Sept2 G-Domain Length = 315 | 3e-50 | ||
| 2qnr_A | 301 | Human Septin 2 In Complex With Gdp Length = 301 | 7e-47 | ||
| 2qag_C | 418 | Crystal Structure Of Human Septin Trimer 267 Length | 5e-46 | ||
| 3ftq_A | 274 | Crystal Structure Of Septin 2 In Complex With Gppnh | 6e-45 | ||
| 3tw4_A | 271 | Crystal Structure Of Human Septin 7 Gtpase Domain L | 5e-38 | ||
| 3t5d_A | 274 | Crystal Structure Of Septin 7 In Complex With Gdp L | 1e-37 | ||
| 2qag_B | 427 | Crystal Structure Of Human Septin Trimer 267 Length | 1e-26 | ||
| 3sop_A | 270 | Crystal Structure Of Human Septin 3 Gtpase Domain L | 7e-21 | ||
| 3sop_A | 270 | Crystal Structure Of Human Septin 3 Gtpase Domain L | 1e-11 | ||
| 3sop_A | 270 | Crystal Structure Of Human Septin 3 Gtpase Domain L | 4e-07 |
| >pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267 Length = 361 | Back alignment and structure |
|
| >pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain Length = 315 | Back alignment and structure |
|
| >pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp Length = 301 | Back alignment and structure |
|
| >pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267 Length = 418 | Back alignment and structure |
|
| >pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And Mg2+ Length = 274 | Back alignment and structure |
|
| >pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain Length = 271 | Back alignment and structure |
|
| >pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp Length = 274 | Back alignment and structure |
|
| >pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267 Length = 427 | Back alignment and structure |
|
| >pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain Length = 270 | Back alignment and structure |
|
| >pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain Length = 270 | Back alignment and structure |
|
| >pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain Length = 270 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 541 | |||
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 3e-67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 7e-19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 8e-66 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 2e-19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 4e-19 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 1e-65 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 2e-19 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 2e-62 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 2e-16 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 6e-58 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 1e-11 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 2e-09 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 3e-09 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 2e-07 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 4e-06 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 9e-06 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 2e-05 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 2e-04 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 6e-04 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 6e-04 |
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 3e-67
Identities = 112/325 (34%), Positives = 164/325 (50%), Gaps = 41/325 (12%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R
Sbjct: 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY-SPEYPGPSHRI 68
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR 360
KT +E+ + I+E GV+L LT+VDTPGFGD++++ W+ YID +F Y N E+R
Sbjct: 69 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESR 128
Query: 361 QGKTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEE---- 399
+ + K +DIE + + ++ ++ D++ EE
Sbjct: 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQF 188
Query: 400 ---SWRACCSY---IDDQFRQYFNDESGLNRKNIVDNRFATNRHRNNAPTPS-------- 445
+ + I + +E+ L +K A
Sbjct: 189 KKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQY 248
Query: 446 -----QVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLK 500
+VEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+ ++ G
Sbjct: 249 PWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKN 308
Query: 501 KDSAPDGLITETDRLLLEKDEELVK 525
K + + + E ++ K
Sbjct: 309 KGQLTKSPLAQMEEERREHVAKMKK 333
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 7e-19
Identities = 39/47 (82%), Positives = 45/47 (95%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
Y+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 11 YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY 57
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 8e-66
Identities = 90/327 (27%), Positives = 141/327 (43%), Gaps = 49/327 (14%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
+GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF +
Sbjct: 21 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPATHT 75
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE-- 358
++ + D++E V+L+LT+V T GFGD IN E+S++ +ID QF Y +E
Sbjct: 76 QPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 135
Query: 359 -NRQGKT---------------TTIEKKSMDIE-ERGVKLRLTVVDTPGFGDSINSEESW 401
R T T KS+D+ + + ++ ++ D+I+ E
Sbjct: 136 IRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELT 195
Query: 402 RACCSYIDD---------QFRQYFNDESGLNRKNIVDNRFA-------------TNRHRN 439
+ + QF + +N FA R R
Sbjct: 196 KFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRARQ 255
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKL 499
QVEN H DF KLR MLI +M+DL++ T HYE +R L ++ +
Sbjct: 256 YPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDS 315
Query: 500 KKDS---APDGLITETDRLLLEKDEEL 523
K S + E L +K+EE+
Sbjct: 316 KPFSLQETYEAKRNEFLGELQKKEEEM 342
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 2e-19
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD-----RKVPNV 133
++GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+ + +
Sbjct: 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQL 81
Query: 134 NGSNTVIEVAGTKVR 148
+ ++ + +++
Sbjct: 82 QSNTYDLQESNVRLK 96
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 4e-19
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226
++GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+
Sbjct: 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 70
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 1e-65
Identities = 114/300 (38%), Positives = 164/300 (54%), Gaps = 44/300 (14%)
Query: 246 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305
+ LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R + ++ +T
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ 61
Query: 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE---NRQG 362
IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE NR+
Sbjct: 62 IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRH 121
Query: 363 KT-------------TTIEKKSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWR------ 402
K +D+ + + ++ +V D++ +E R
Sbjct: 122 IIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRIL 181
Query: 403 ACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNRHRNNAPTPSQ---------------- 446
+ + + ES + R + +Q
Sbjct: 182 DEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPW 241
Query: 447 ----VENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKD 502
VENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L + ++ + + KD
Sbjct: 242 GVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKD 300
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 2e-19
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 83 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 132
+ LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISG 51
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 2e-62
Identities = 123/326 (37%), Positives = 175/326 (53%), Gaps = 55/326 (16%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P ++
Sbjct: 16 GYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKI 75
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE-- 358
+T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE
Sbjct: 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESG 135
Query: 359 -NRQGKT-------------TTIEKKSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWR- 402
NR+ K +D+ + + ++ +V D++ +E R
Sbjct: 136 LNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERL 195
Query: 403 -----ACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNR--------------------H 437
+ + + ES + R
Sbjct: 196 KKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRG 255
Query: 438 RNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRG 497
R +VENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L + ++ +
Sbjct: 256 RLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVENE 314
Query: 498 KLKKDSAPDGLITETDRLLLEKDEEL 523
+ D++LLEK+ EL
Sbjct: 315 DM-----------NKDQILLEKEAEL 329
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 2e-16
Identities = 43/54 (79%), Positives = 49/54 (90%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 132
Y+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPG 70
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 6e-58
Identities = 98/273 (35%), Positives = 140/273 (51%), Gaps = 41/273 (15%)
Query: 256 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315
+ GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R KT +E+ + I+E
Sbjct: 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLY-SPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR--------------- 360
GV+L LT+VDTPGFGD++++ W+ YID +F Y N E+R
Sbjct: 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL 120
Query: 361 -QGKTTTIEKKSMDIEE-RGVKLRLTVVDTPGFGDSINSEESW----------RACCSYI 408
+ K +DIE + + ++ ++ D++ EE + I
Sbjct: 121 YFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 180
Query: 409 DDQFRQYFNDESGLNRKNIVDNRFATN-------------RHRNNAPTPSQVENPKHSDF 455
+ +E+ L +K A R R ++VEN +H DF
Sbjct: 181 YEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDF 240
Query: 456 NKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 488
LRNMLI THMQDLKDVT +VHYEN+R++ L+
Sbjct: 241 TILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-13
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
+ GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLY 34
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 3e-12
Identities = 90/559 (16%), Positives = 167/559 (29%), Gaps = 127/559 (22%)
Query: 34 NW-TSKISEENGDVYCLSCSPHCLTFPEAYRIKMTPDGGSCATDRDYIGFATLPEQVH-- 90
+ S I E S + R ++ D A Y + +
Sbjct: 92 KFLMSPIKTE-----QRQPSMMTRMY-IEQRDRLYNDNQVFA---KY--NVSRLQPYLKL 140
Query: 91 RKSVKKGFDFTLMVV-GESGLGKSTLVNSLFLSDLYGDR--------KVPNVNGSNTVIE 141
R+++ + +++ G G GK+ + + LS + + N N TV+E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE------QVHRKSVKK 195
+ + W + I S+ R + V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 196 GFDF---TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS----IPYSDIGFATL 248
F+ L+ + + +++ + + D + + Y D L
Sbjct: 261 AFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 249 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308
P + V L ++ ES + + L D + K N + K TTI +
Sbjct: 319 PRE-----VLTTNPRRLSIIAES------IRDGLATWDNW---KHVNCD----KLTTIIE 360
Query: 309 KSMDI----EERGVKLRLTVVDTPGFGDSINSEES-----WRACCSYIDDQFRQYFNDE- 358
S+++ E R + RL+V F S + W +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 359 --NRQGKTTTIEKKSMDIEERG-----VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQ 411
+Q K +TI S+ +E + L ++VD + +S Y+D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF---DSDDLIPPYLDQY 472
Query: 412 FRQYF---------NDESGLNRKNIVDNRFATNRHRNNAPTPSQVENPKHSDFNKLRNML 462
F + + L R +D RF + R+++ N S N L
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW----NASGSILNTL---- 524
Query: 463 ISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPDGLITETDRLLLEKDEE 522
Q LK Y+ + I D + L+ L + +E
Sbjct: 525 -----QQLK------FYKPY-------IC--------DNDPKYERLVNAILDFLPKIEEN 558
Query: 523 LVKS---TIIISALNAPKQ 538
L+ S ++ AL A +
Sbjct: 559 LICSKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 57/208 (27%)
Query: 344 CSYIDDQFRQYFNDENRQGKTTTIEK--KSMDIEERGVKLRLTVVDTPG------FGDSI 395
C + D + + E I+ S D ++L T++ + +
Sbjct: 35 CKDVQDMPKSILSKEE-------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 396 NSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNRHRNNAP--TPSQVENPKHS 453
+ + + S + + ++ R +R N+ V +
Sbjct: 88 RINYKF------LMSPIKTEQRQPS-MMTRMYIEQR---DRLYNDNQVFAKYNVSRLQP- 136
Query: 454 DFNKLRNMLISTHMQDLKDVTEDVH--------------YENFRAQCLSQISQRGDRG-- 497
+ KLR L+ ++ K+V + +++ QC D
Sbjct: 137 -YLKLRQALLE--LRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKM------DFKIF 185
Query: 498 --KLKKDSAPDGLITETDRLLLEKDEEL 523
LK ++P+ ++ +LL + D
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 236 GSIPYSDIGFATLP--------EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 287
GS+ +GF P E + K T++V+G+ G+GKS+ VNSL
Sbjct: 2 GSLVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI---- 57
Query: 288 YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEE 338
+V V+ Q + S + + ++DTPG ++
Sbjct: 58 --GEQVVRVSPFQAEGLRPVMVSRTMGGF----TINIIDTPGLVEAGYVNH 102
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 248 LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307
L E + + T++V+G+ G+GKS+ VNS+ +V +++ Q +
Sbjct: 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII------GERVVSISPFQSEGPRPV 78
Query: 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEE 338
S L ++DTPG + +
Sbjct: 79 MVSRSRAGF----TLNIIDTPGLIEGGYIND 105
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321
+++VG++G GKS NS+ G + + + T EK+S +E
Sbjct: 29 QLRIVLVGKTGAGKSATGNSIL-----GRKVFHSGTAAKSITKKCEKRSSSWKET----E 79
Query: 322 LTVVDTPGFGDSINSEE 338
L VVDTPG D+
Sbjct: 80 LVVVDTPGIFDTEVPNA 96
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR-QGKTTTIEKKSMDIEERGVKL 320
+ +++VG++G GKS NS+ ++ Q T T K R
Sbjct: 22 ELRIILVGKTGTGKSAAGNSIL------RKQAFESKLGSQTLTKTCSKSQGSWGNR---- 71
Query: 321 RLTVVDTPGFGDSINSEE 338
+ ++DTP + E
Sbjct: 72 EIVIIDTPDMFSWKDHCE 89
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGE 270
DL D + VNE+ I Y +IG+ +V S + G+
Sbjct: 170 IDLLDDEGMDFVNEQMDI-YRNIGY-----RVLMVSSHTQDGLKPLEEALTGRISIFAGQ 223
Query: 271 SGLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKLRLTVVDTP 328
SG+GKS+L+N+L + +V++ G+ TT + G V+D+P
Sbjct: 224 SGVGKSSLLNALLGLQN--EILTNDVSNVSGLGQHTTTAARLYHFPHGGD-----VIDSP 276
Query: 329 GF 330
G
Sbjct: 277 GV 278
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGES 271
DL + + + SI Y D G+ V + S K G ++ G S
Sbjct: 121 DLLNEEEKKELERWISI-YRDAGY-----DVLKVSAKTGEGIDELVDYLEGFICILAGPS 174
Query: 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329
G+GKS++++ L +L + V+++ +G+ TT + + + V DTPG
Sbjct: 175 GVGKSSILSRLTGEEL----RTQEVSEKTERGRHTTTGVRLIPFGKGSF-----VGDTPG 225
Query: 330 F 330
F
Sbjct: 226 F 226
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 34/125 (27%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGES 271
DL D+ + + + Y +IG+ V+ S K T + G+S
Sbjct: 128 DLIEDQDTEDTIQAYAEDYRNIGY-----DVYLTSSKDQDSLADIIPHFQDKTTVFAGQS 182
Query: 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKL-RLT---VV 325
G+GKS+L+N++ +L + +++ +GK TT R V+L + V
Sbjct: 183 GVGKSSLLNAI-SPEL--GLRTNEISEHLGRGKHTT----------RHVELIHTSGGLVA 229
Query: 326 DTPGF 330
DTPGF
Sbjct: 230 DTPGF 234
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGES 271
DLY + + V E I YS + + + S K G + G S
Sbjct: 126 DLYDEDDLRKVRELEEI-YSGLY------PIVKTSAKTGMGIEELKEYLKGKISTMAGLS 178
Query: 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329
G+GKS+L+N++ L +V V+++ +G+ TT + + + G VVDTPG
Sbjct: 179 GVGKSSLLNAI-NPGL--KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY-----VVDTPG 230
Query: 330 F 330
F
Sbjct: 231 F 231
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 6e-04
Identities = 46/295 (15%), Positives = 93/295 (31%), Gaps = 28/295 (9%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVK 258
F L+V+G+ GKST +N+L G+ +P SD+ T V ++
Sbjct: 70 FRLLVLGDMKRGKSTFLNALI-----GENLLP----------SDVNPCTAVLTV----LR 110
Query: 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318
G + + + G L F D +++ K + +E
Sbjct: 111 YGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLT 170
Query: 319 KLR--LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376
L+ + +VD+PG D+ E + + ++ I+
Sbjct: 171 LLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAIL--FVMRASQPCTLGERRYLENYIKG 228
Query: 377 RGVKLR--LTVVDTPGFGD-SINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNR-- 431
RG+ + + D + E +A + + F + + +NI D R
Sbjct: 229 RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVF 288
Query: 432 FATNRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQC 486
++ + + + F K + L + ++ R C
Sbjct: 289 ELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARLAC 343
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 100.0 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 100.0 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 100.0 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 100.0 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 100.0 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.94 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.94 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.94 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.94 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.93 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.93 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.93 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.93 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.93 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.93 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.93 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.93 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.93 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.92 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.92 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.92 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.92 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.92 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.92 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.91 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.91 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.9 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.9 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.9 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.9 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.9 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.9 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.9 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.89 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.89 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.89 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.87 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.87 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.85 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.84 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.84 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.84 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.83 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.83 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.82 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.82 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.81 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.77 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.77 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.75 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.75 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.74 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.7 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.68 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.68 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.67 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.67 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.61 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.6 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.6 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.55 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.48 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.44 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.41 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.4 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.38 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.36 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.27 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.24 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.21 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.2 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.19 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.18 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.11 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.07 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.99 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.91 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.9 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.88 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.86 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.84 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.78 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.75 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.74 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.73 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.71 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.62 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.57 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.53 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.51 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.51 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.48 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.44 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.42 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.37 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.37 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.34 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.33 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.32 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.3 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.25 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.24 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.24 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.23 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.2 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.19 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.15 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.11 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.04 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.98 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.98 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.97 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.93 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.93 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.92 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.91 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.86 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.85 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.84 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.84 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.81 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.8 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.79 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.79 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.68 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.68 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.67 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.67 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.65 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.6 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.59 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.59 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 97.57 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.55 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.54 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.53 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.51 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.5 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.48 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.46 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.45 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.41 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.37 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.36 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 97.36 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 97.34 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 97.34 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 97.33 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.32 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.31 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 97.3 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 97.3 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.28 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.26 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 97.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.26 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 97.26 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.25 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.24 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.23 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.22 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 97.22 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.22 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.2 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 97.19 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 97.19 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.18 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.18 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.18 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.16 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.16 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.16 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.14 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.13 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.13 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.13 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.12 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.12 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.11 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.11 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.1 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 97.1 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.1 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.08 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 97.08 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.08 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 97.08 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 97.07 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.06 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.05 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 97.05 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 97.04 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 97.03 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.03 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 97.03 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.03 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.01 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.01 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.99 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.99 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.98 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.97 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.96 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.95 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.94 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.94 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.94 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.94 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.93 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.93 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.93 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.93 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.93 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.92 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.92 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 96.9 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.9 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.89 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.87 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.86 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.86 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.85 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.84 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.84 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.84 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.84 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.82 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.82 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.81 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.8 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.79 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.79 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 96.77 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.75 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.74 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.74 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.74 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.74 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.73 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 96.72 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.71 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.69 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.69 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.68 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 96.68 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.67 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.66 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 96.66 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 96.66 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.65 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.65 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 96.64 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.64 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.63 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.63 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.62 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.62 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.61 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.6 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.59 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.58 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.56 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.55 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 96.55 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.55 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.55 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.55 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.54 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.54 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.53 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.52 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.52 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.51 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.5 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.49 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.49 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.49 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 96.48 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.47 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.47 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.46 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.46 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.45 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.45 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.45 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.42 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.41 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.41 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.41 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 96.41 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.4 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.38 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 96.37 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.37 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.36 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.35 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.32 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.31 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.29 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.28 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 96.28 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 96.26 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 96.24 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.22 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.2 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.2 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.2 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.16 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.16 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.16 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.14 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.14 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.12 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.12 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.09 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.08 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 96.05 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.03 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.03 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.99 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.98 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.96 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.93 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.93 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 95.92 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.92 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 95.92 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 95.9 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.9 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.89 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.88 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 95.87 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.87 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.85 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 95.84 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.82 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 95.82 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.82 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.82 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.81 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.8 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.78 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.77 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.77 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.76 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.76 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.75 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.75 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 95.73 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.73 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.72 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.69 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.69 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.68 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.67 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.66 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.64 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.63 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.61 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.61 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.6 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.58 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.56 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.56 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.56 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.55 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.55 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.54 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.52 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.52 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.52 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.5 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.48 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.48 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 95.48 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.47 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.47 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.46 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.45 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.45 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.44 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.44 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.43 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.43 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.43 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.42 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.42 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.4 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.39 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.38 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.38 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.38 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.37 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.37 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.37 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.37 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.37 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.36 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.36 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.35 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 95.34 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.33 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.33 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.32 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.32 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.32 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.3 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.3 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.28 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.28 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.27 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.27 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.25 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.25 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.24 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.24 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.24 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.24 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.23 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.22 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 95.21 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.21 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.21 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.19 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.19 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.19 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.19 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.18 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.15 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.15 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.14 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.14 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.14 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.13 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.13 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.13 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.11 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.09 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 95.09 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.08 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.07 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.06 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.05 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.05 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.05 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 95.02 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.02 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.01 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.0 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 94.99 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.96 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.96 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.95 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.94 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.93 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 94.93 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.93 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.92 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.91 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 94.9 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.9 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.9 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 94.9 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.9 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.9 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.9 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.88 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.88 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.85 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.85 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 94.85 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.84 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.84 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 94.83 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 94.82 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.82 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 94.81 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.81 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.79 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.79 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.78 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.78 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.78 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.77 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.76 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 94.76 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.76 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.74 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.72 |
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=352.51 Aligned_cols=290 Identities=42% Similarity=0.671 Sum_probs=151.0
Q ss_pred CCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 238 IPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 238 ~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
...++||+.+++.++.++.+++|+.|+++++|.+|+|||||+|+|+....+.....+..+.....++.+....+.+..+|
T Consensus 13 ~~~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 92 (361)
T 2qag_A 13 ETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERG 92 (361)
T ss_dssp --------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----C
T ss_pred CCCceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCC
Confidence 44678999999999999999999999999999999999999999987764443332222222345677766666777888
Q ss_pred eeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc---------ee--ecc--c---cchhhh-hccc
Q psy91 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT---------TT--IEK--K---SMDIEE-RGVK 380 (541)
Q Consensus 318 v~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt---------~~--i~~--~---~~di~~-~~l~ 380 (541)
....+.|+||||+||..++..+|.++.+||+++|..|+.++....|. ++ +.. + ..++.. ..++
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~ 172 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 172 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc
Confidence 89999999999999999999999999999999999999988765421 11 111 2 223322 2466
Q ss_pred ceeEEEcCCCCCCCCCcHHHHH---HHHHHHHHHhhhccCc--ccccc----------------cccccchhhh----hh
Q psy91 381 LRLTVVDTPGFGDSINSEESWR---ACCSYIDDQFRQYFND--ESGLN----------------RKNIVDNRFA----TN 435 (541)
Q Consensus 381 ~rvnvIpvi~k~D~lt~~e~~~---~i~~~i~~~~~~~~~~--e~~~~----------------~~~i~d~~v~----~~ 435 (541)
..+++|++++|+|.++..++.. .+.+++......++.- ..+.+ ...+..+... +.
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~vv~s~~~~~~~g~~ 252 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKK 252 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCSCEECCCSEEC------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCCEeCCCCccccCCeE
Confidence 7789999999999999776522 3333332211122210 00000 0011111110 22
Q ss_pred hccCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCCcccccCCCCCCCCchhhHH
Q psy91 436 RHRNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPDGLITETDR 514 (541)
Q Consensus 436 ~~~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
..+|.||| +|+|||++||||++||++|| +||+||++.|+++|||+||+++|.+++... ...+.++++
T Consensus 253 ~~gr~ypwg~~~ven~~h~df~~Lr~~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~~~~~-----------~~~~~~~~~ 320 (361)
T 2qag_A 253 VRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKV-----------ENEDMNKDQ 320 (361)
T ss_dssp CEEECCSSCCEESSCC-CCTHHHHHHHHH-HCCGGGTHHHHTTTHHHHHTTTC---------------------------
T ss_pred EEEEecCCceEecCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----------cccchhhhh
Confidence 34568999 99999999999999999999 999999999999999999999999876421 113346899
Q ss_pred HhhhchHHHHHHHHHHHHHHHhHhh
Q psy91 515 LLLEKDEELVKSTIIISALNAPKQQ 539 (541)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (541)
++++||+|++|||+||++||++|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (361)
T 2qag_A 321 ILLEKEAELRRMQEMIARMQAQMQM 345 (361)
T ss_dssp -------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=341.61 Aligned_cols=292 Identities=32% Similarity=0.497 Sum_probs=157.0
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+++|...+.+-...+++.|..|+++++|++|+|||||+|.|++..+.. ...... .....+....+...+.++.+.
T Consensus 22 ~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g-~~~~~~----~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEG-EPATHT----QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------C----CSSCEEEEEEEEEEC--CEEE
T ss_pred EEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccC-CcCCCC----CccceEeeEEEEeecCccccc
Confidence 566655444456678899999999999999999999999998874221 111111 111222333344566777889
Q ss_pred EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc-----------eee-------ccccchhhh-hcccce
Q psy91 322 LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT-----------TTI-------EKKSMDIEE-RGVKLR 382 (541)
Q Consensus 322 L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt-----------~~i-------~~~~~di~~-~~l~~r 382 (541)
++++|+||+|+.+++..+|.+|.+||++++..||.++.+..++ .+. .....|++. +.++.+
T Consensus 97 ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~ 176 (427)
T 2qag_B 97 LTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSK 176 (427)
T ss_dssp EEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSC
T ss_pred cchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhC
Confidence 9999999999998888999999999999999999988544321 111 234455555 357788
Q ss_pred eEEEcCCCCCCCCCcHHHHHHHHHHHHHHhh----hcc--C--ccc----------ccccccccchhhh----hhhccCC
Q psy91 383 LTVVDTPGFGDSINSEESWRACCSYIDDQFR----QYF--N--DES----------GLNRKNIVDNRFA----TNRHRNN 440 (541)
Q Consensus 383 vnvIpvi~k~D~lt~~e~~~~i~~~i~~~~~----~~~--~--~e~----------~~~~~~i~d~~v~----~~~~~~~ 440 (541)
++||++++|+|+|++.|+ ..+.+.|.+.+. .++ . |+. .++...+..+.+. +.+.+|.
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~-~~l~~~I~~~L~~~gi~I~~is~~d~~~~~~~~~~~~~~PFavvgs~~~~~~~g~~vrgR~ 255 (427)
T 2qag_B 177 VNIIPIIAKADAISKSEL-TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRARQ 255 (427)
T ss_dssp SEEEEEESCGGGSCHHHH-HHHHHHHHHHHBTTBCCCCCCC-----CCSHHHHHTTC-CCBCCC--------CCCC----
T ss_pred CCEEEEEcchhccchHHH-HHHHHHHHHHHHHcCCcEEecCCCchhHHHHHhhhcCCCCeEEECCCCeeeeCCcEEEEec
Confidence 999999999999999886 333333333222 111 1 111 1122334343332 2345678
Q ss_pred CCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCC--------------------cccc
Q psy91 441 APT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGD--------------------RGKL 499 (541)
Q Consensus 441 ~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~--------------------~~~~ 499 (541)
||| +||||||+||||++||+|||++||+||++.|+++|||+||+++|+.++.... ..++
T Consensus 256 ypWG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (427)
T 2qag_B 256 YPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGEL 335 (427)
T ss_dssp -CCCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC----------------------------
T ss_pred CCCceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhHHHHHHhHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999998764320 0222
Q ss_pred cC-CCCC----CCCchhhHHHhhhchHHH-HHHHHHHHHHHHhHhh
Q psy91 500 KK-DSAP----DGLITETDRLLLEKDEEL-VKSTIIISALNAPKQQ 539 (541)
Q Consensus 500 ~~-~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 539 (541)
++ +.+| .+.+.|+|..|++.|+|| +++++|..++++|++.
T Consensus 336 ~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~ 381 (427)
T 2qag_B 336 QKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381 (427)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2333 277889999999999999 7888888888887663
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=323.01 Aligned_cols=297 Identities=38% Similarity=0.620 Sum_probs=151.0
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~ 320 (541)
..+++.+++.++.++.+.+|+.|+++++|++|+|||||+|.|++........ ...+.....++.+....+.+.+.++.+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~-~~~~~~~~~t~~~~~i~~v~q~~~~~~ 88 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQL 88 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCC-CSCC-----CCEEEEEECC------CE
T ss_pred CcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCC-CCcccCCccceeeeeEEEEEecCCccc
Confidence 4577888888888889999999999999999999999999999765321111 111111123344444444556778888
Q ss_pred eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee---------e--c-c-ccch---hhh-hccccee
Q psy91 321 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT---------I--E-K-KSMD---IEE-RGVKLRL 383 (541)
Q Consensus 321 ~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~---------i--~-~-~~~d---i~~-~~l~~rv 383 (541)
.++|+|+||+|+..++..+|.++.+||++++..|+.++..+.|... + . + +.++ +.. ..++..+
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v 168 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKV 168 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTS
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccC
Confidence 9999999999998888889999999999999999987655443311 1 1 1 2232 222 3456689
Q ss_pred EEEcCCCCCCCCCcHHHH---HHHHHHHHHHhhhccC-c-cc--c---c--------ccccccchhhh----hhhccCCC
Q psy91 384 TVVDTPGFGDSINSEESW---RACCSYIDDQFRQYFN-D-ES--G---L--------NRKNIVDNRFA----TNRHRNNA 441 (541)
Q Consensus 384 nvIpvi~k~D~lt~~e~~---~~i~~~i~~~~~~~~~-~-e~--~---~--------~~~~i~d~~v~----~~~~~~~~ 441 (541)
++|++++|+|.++..++. ..+.+++......++. . .. . . +...+..+... +.+.+|.|
T Consensus 169 ~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPfavv~s~~~~~~~g~~vr~R~y 248 (418)
T 2qag_C 169 NIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQY 248 (418)
T ss_dssp EEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCEEECC-------------CEEC
T ss_pred cEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCcceeecceeEecCCceeecccc
Confidence 999999999999987762 3455555554333321 1 00 0 0 11111122111 23445678
Q ss_pred Cc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhc---cccC-Cc--------------------
Q psy91 442 PT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQI---SQRG-DR-------------------- 496 (541)
Q Consensus 442 p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~---~~~~-~~-------------------- 496 (541)
|| +|+|||++||||++||++||++||+||++.|+++|||+||+++|..+ +... ++
T Consensus 249 ~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (418)
T 2qag_C 249 PWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHV 328 (418)
T ss_dssp SSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC--------------------------------
T ss_pred cceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCccccccccccCCChHHHHHHHHHHHH
Confidence 88 99999999999999999999999999999999999999999999987 3211 10
Q ss_pred ccccC-CCCC----CCCchhhHHHhhhchHHH-HHHHHHHHHHHHhHh
Q psy91 497 GKLKK-DSAP----DGLITETDRLLLEKDEEL-VKSTIIISALNAPKQ 538 (541)
Q Consensus 497 ~~~~~-~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 538 (541)
.|+++ |.+| ++.+.++|..+++.|+|| +++.+|...+++|.+
T Consensus 329 ~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~ 376 (418)
T 2qag_C 329 AKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHK 376 (418)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333 3444 378899999999999999 888888877777654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=299.95 Aligned_cols=227 Identities=35% Similarity=0.566 Sum_probs=150.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhh
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW 340 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~ 340 (541)
|.|+++++|++|+|||||+|+|++......-.+........++.......+..++.++.+.++++|+||+|+..++..+|
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 67999999999999999999999764221111000000011111112222334677888999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhcccCcc------------eeec-----cccchhhh-hcccceeEEEcCCCCCCCCCcHHHH-
Q psy91 341 RACCSYIDDQFRQYFNDENRQGKT------------TTIE-----KKSMDIEE-RGVKLRLTVVDTPGFGDSINSEESW- 401 (541)
Q Consensus 341 ~~i~~yI~~~~~~~l~~e~~~~rt------------~~i~-----~~~~di~~-~~l~~rvnvIpvi~k~D~lt~~e~~- 401 (541)
+++..|++.++.+++.++...++. .++. ..+.|++. ..++.++++|++++|+|.++.+|+.
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCCHHHHHH
Confidence 999999999999998877544332 1111 22334443 3466669999999999999998862
Q ss_pred --HHHHHHHHHHhhhccC----ccc-c------------cccccccchhhh----hhhccCCCCc-ccccCCCCcccHHH
Q psy91 402 --RACCSYIDDQFRQYFN----DES-G------------LNRKNIVDNRFA----TNRHRNNAPT-PSQVENPKHSDFNK 457 (541)
Q Consensus 402 --~~i~~~i~~~~~~~~~----~e~-~------------~~~~~i~d~~v~----~~~~~~~~p~-~veven~~h~DF~~ 457 (541)
+.|.+.+.++...++. +++ + .+...+.++... +.+.+|.||| +|||||++||||++
T Consensus 161 ~k~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~pfavv~s~~~~~~~g~~~~~r~y~wg~~~v~n~~h~df~~ 240 (270)
T 3sop_A 161 FKQRVRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLNHCEFAL 240 (270)
T ss_dssp HHHHHHHHHHHTTCCCSSCSCC---CHHHHHHHHHHHTTCSEECCCCCCEEEETTEEEEEECCCC-CEESSCTTTCSHHH
T ss_pred HHHHHHHHHHHcCccccCCCCCCcchHHHHHHHHHHhcCCCeEEEecceEEEeCCcEEEEeecCceEEEeCCcccccHHH
Confidence 3455555554433332 111 0 011122222211 2234568999 99999999999999
Q ss_pred HHHHHhhhhHHHHHHhhhhhhHHhhHHHHH
Q psy91 458 LRNMLISTHMQDLKDVTEDVHYENFRAQCL 487 (541)
Q Consensus 458 Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l 487 (541)
||+|||++|||||||.|+++|||+||+++|
T Consensus 241 lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 241 LRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp HHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999986
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=294.60 Aligned_cols=232 Identities=41% Similarity=0.671 Sum_probs=157.5
Q ss_pred hhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 257 VKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 257 vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
.++|+.|+++++|.+|+|||||+|+|+..+.+.... +..+.....++.+......+.++|...++.|+||||+|+..++
T Consensus 3 ~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred CcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCC-CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence 578999999999999999999999999887554432 1223334566777777777888898999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhcccCcce-----------eec-----cccchhhh-hcccceeEEEcCCCCCCCCCcHH
Q psy91 337 EESWRACCSYIDDQFRQYFNDENRQGKTT-----------TIE-----KKSMDIEE-RGVKLRLTVVDTPGFGDSINSEE 399 (541)
Q Consensus 337 ~~~~~~i~~yI~~~~~~~l~~e~~~~rt~-----------~i~-----~~~~di~~-~~l~~rvnvIpvi~k~D~lt~~e 399 (541)
..+|.++.+||+++|..|+.++.+..|.. .+. ....++.. ..++.++++|++++|+|.++..+
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHH
Confidence 99999999999999999999987765431 111 12233332 23455889999999999998877
Q ss_pred HH---HHHHHHHHHHhhhccC-c---cccc-----------ccccccchhh----hhhhccCCCCc-ccccCCCCcccHH
Q psy91 400 SW---RACCSYIDDQFRQYFN-D---ESGL-----------NRKNIVDNRF----ATNRHRNNAPT-PSQVENPKHSDFN 456 (541)
Q Consensus 400 ~~---~~i~~~i~~~~~~~~~-~---e~~~-----------~~~~i~d~~v----~~~~~~~~~p~-~veven~~h~DF~ 456 (541)
.. ..+.+.+...-..++. . ..+. ....+..+.. .+.+++|.||| +|||||++||||.
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg~~~ve~~~~~df~ 241 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFT 241 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSCEEESSCTTTCSHH
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccceEEecCcccccHH
Confidence 52 2333333322222221 0 0000 0111111111 13455678999 9999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhh
Q psy91 457 KLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQ 489 (541)
Q Consensus 457 ~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~ 489 (541)
+||++||++|||||++.|+++|||+||+++|++
T Consensus 242 ~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~~ 274 (274)
T 3t5d_A 242 ILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAA 274 (274)
T ss_dssp HHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999973
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=283.93 Aligned_cols=245 Identities=44% Similarity=0.696 Sum_probs=136.0
Q ss_pred ccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcC
Q psy91 248 LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDT 327 (541)
Q Consensus 248 ~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~De 327 (541)
++.++.++.+.+++.|+++++|++|+|||||+|.|++.........+.......+++.+....+.+++.+..+.++++|+
T Consensus 4 l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt 83 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDT 83 (301)
T ss_dssp --------------CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEE
T ss_pred CcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhh
Confidence 45567788899999999999999999999999999876434332211100011223333334455567788899999999
Q ss_pred CCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc---------ee--ec--cccchhh---h-hcccceeEEEcCCC
Q psy91 328 PGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT---------TT--IE--KKSMDIE---E-RGVKLRLTVVDTPG 390 (541)
Q Consensus 328 Pg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt---------~~--i~--~~~~di~---~-~~l~~rvnvIpvi~ 390 (541)
||+|+..++...|.++.++|++++..|+.+++...|. ++ +. .+.+|.. . ..++..++++++++
T Consensus 84 ~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 84 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEEC
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 9999988777789999999999999999988653211 11 11 1223322 2 23455678999999
Q ss_pred CCCCCCcHHHH---HHHHHHHHHHhhhccCccc---cc---------------ccccccchhhh----hhhccCCCCc-c
Q psy91 391 FGDSINSEESW---RACCSYIDDQFRQYFNDES---GL---------------NRKNIVDNRFA----TNRHRNNAPT-P 444 (541)
Q Consensus 391 k~D~lt~~e~~---~~i~~~i~~~~~~~~~~e~---~~---------------~~~~i~d~~v~----~~~~~~~~p~-~ 444 (541)
|.|.++..++. +.+.+++.+....++.-.. .. ....+..+... +..++|.||| +
T Consensus 164 K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~~v~e~f~~l~~~i~~~~p~avigs~~~~~~~g~~~~~r~y~wg~ 243 (301)
T 2qnr_A 164 KADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGV 243 (301)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------CHHHHHHHHTTCSEECCCCCCBCC-----CBEEEETTEE
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccccccHHHHHHHHHhhcCCCceEECCCceEecCCcEEeeEcCCCce
Confidence 99999976642 3445555443223321000 00 00111111111 2234568999 9
Q ss_pred cccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhcccc
Q psy91 445 SQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQR 493 (541)
Q Consensus 445 veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~ 493 (541)
|+||||+||||++||+||| +||+|||+.|+++|||+||+++|.+++..
T Consensus 244 ~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~~~ 291 (301)
T 2qnr_A 244 VEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRK 291 (301)
T ss_dssp EETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHHHHC----
T ss_pred EeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999 99999999999999999999999988753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-28 Score=252.74 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=156.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.++||+++|++..+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+... ......
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~---i~G~~i~~~--~~~~~~ 77 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS---LSGKTIFSK--NTNLPV 77 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEEESS--SCBCCG
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE---ECCEECccc--ccccch
Confidence 3689999999999999999999999 9999999999999999954 67889999 889844211 111223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||||++.++|++ ||+||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 78 ~~r~ig~vfQ~~~l~p~l------tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~--------------------- 130 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHL------TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE--------------------- 130 (359)
T ss_dssp GGSCCEEECTTCCCCTTS------CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG---------------------
T ss_pred hhCCEEEEeCCCcCCCCC------CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch---------------------
Confidence 456799999999999999 99999999843334445566677888888888864
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++++..+|+|++|+++|+++
T Consensus 131 ----------------------------------------------------------~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 131 ----------------------------------------------------------LAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp ----------------------------------------------------------GTTSCGGGSCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HhcCChhhCCHHHHHHHHHHHH
Confidence 2334566799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++|+|||..|.+..... ++.+.+.+.. +.+.++++.+|+++.. ..++.++.++.
T Consensus 153 L~~------~P~lLLLDEPts~LD~~~r~-----------~l~~~l~~~~~~~g~tvi~vTHd~~ea-~~~aDri~vl~ 213 (359)
T 3fvq_A 153 LAP------DPELILLDEPFSALDEQLRR-----------QIREDMIAALRANGKSAVFVSHDREEA-LQYADRIAVMK 213 (359)
T ss_dssp HTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHTTCEEEEECCCHHHH-HHHCSEEEEEE
T ss_pred HHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHCCEEEEEE
Confidence 998 99999999997775544332 5555555443 3588999999998743 34667776664
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-28 Score=251.83 Aligned_cols=197 Identities=18% Similarity=0.189 Sum_probs=156.8
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|++..+|++|||+| +|+|||||||||||++|+| .+++|+|+ ++|+.+ ...+ ..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~---i~G~~~----~~~~--~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF---IGEKRM----NDTP--PA 73 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTCC--GG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE---ECCEEC----CCCC--HH
Confidence 489999999999999999999999 9999999999999999954 67889999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||++.++|++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 74 ~r~ig~VfQ~~~l~p~l------tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 125 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHL------SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH---------------------- 125 (381)
T ss_dssp GSCEEEECTTCCCCTTS------CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG----------------------
T ss_pred HCCEEEEecCCcCCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 35799999999999999 99999999843334455666778888888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+|+|++|+++|++++
T Consensus 126 ---------------------------------------------------------~~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 126 ---------------------------------------------------------LLDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ---------------------------------------------------------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------hhcCChhHCCHHHHHHHHHHHHH
Confidence 22345667999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..+.+.... .++.++|.+..+. +.++++.+|+++.. ..++.++.++.
T Consensus 149 ~~------~P~lLLLDEPts~LD~~~~-----------~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~~aDri~vl~ 208 (381)
T 3rlf_A 149 VA------EPSVFLLDEPLSNLDAALR-----------VQMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKIVVLD 208 (381)
T ss_dssp HH------CCSEEEEESTTTTSCHHHH-----------HHHHHHHHHHHHHHCCEEEEECSCHHHH-HHHCSEEEEEE
T ss_pred Hc------CCCEEEEECCCcCCCHHHH-----------HHHHHHHHHHHHhCCCEEEEEECCHHHH-HHhCCEEEEEE
Confidence 98 9999999999777554433 2677777777554 88999999987743 34667777664
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-28 Score=249.44 Aligned_cols=205 Identities=18% Similarity=0.229 Sum_probs=158.6
Q ss_pred CCCceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceeccc
Q psy91 76 DRDYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
+.+.|+++||++.|+. ..+|++|||+| ||+|||||||||||++|+ ..+++|+|. ++|+++.. ..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~---i~G~~i~~-~~ 96 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL---VDGQELTT-LS 96 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEECSS-CC
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE---ECCEECCc-CC
Confidence 3457999999999964 46999999999 999999999999999994 467889999 88884321 11
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..++.+|||||++.+++.+ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~------TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~--------------- 155 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSR------TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD--------------- 155 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTS------CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG---------------
T ss_pred HHHHHHHhCcEEEEeCCCccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch---------------
Confidence 111122346799999999999999 99999998733334455666778888898888854
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++++..+|+|++|+
T Consensus 156 ----------------------------------------------------------------~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 156 ----------------------------------------------------------------KHDSYPSNLSGGQKQR 171 (366)
T ss_dssp ----------------------------------------------------------------GTTCCTTTSCHHHHHH
T ss_pred ----------------------------------------------------------------HhcCChhhCCHHHHHH
Confidence 2234567899999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||+.|.+..... ++.++|.+..+. +.++++.+|+++... .++.+
T Consensus 172 VaIArAL~~------~P~lLLlDEPTs~LD~~~~~-----------~i~~lL~~l~~~~g~Tii~vTHdl~~~~-~~aDr 233 (366)
T 3tui_C 172 VAIARALAS------NPKVLLCDQATSALDPATTR-----------SILELLKDINRRLGLTILLITHEMDVVK-RICDC 233 (366)
T ss_dssp HHHHHHTTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHSCCEEEEEESCHHHHH-HHCSE
T ss_pred HHHHHHHhc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCE
Confidence 999999998 99999999998886655443 677777777544 889999999987543 46677
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 234 v~vl~ 238 (366)
T 3tui_C 234 VAVIS 238 (366)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-28 Score=234.99 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=151.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ........
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~-~~~~~~~~ 78 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF---LEGKEVDY-TNEKELSL 78 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE---ETTEECCS-SCHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEECCC-CCHHHHHH
Confidence 4589999999999889999999999 9999999999999999955 57789999 88873211 01000111
Q ss_pred -ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 -RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 -~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
+++.++||+|+..+++.+ ||.||+.++....+....+..+++.++++.+|+.+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------- 132 (224)
T 2pcj_A 79 LRNRKLGFVFQFHYLIPEL------TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-------------------- 132 (224)
T ss_dssp HHHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT--------------------
T ss_pred HHhCcEEEEecCcccCCCC------CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch--------------------
Confidence 225799999999999999 99999988622122222334456777787777754
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.++.+..+|+|++|++.|++
T Consensus 133 -----------------------------------------------------------~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 133 -----------------------------------------------------------KLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp -----------------------------------------------------------CTTCCGGGSCHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hhhCChhhCCHHHHHHHHHHH
Confidence 122345568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +|+++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+.+.. .++.++.++
T Consensus 154 al~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~l~~~g~tvi~vtHd~~~~--~~~d~v~~l 212 (224)
T 2pcj_A 154 ALAN------EPILLFADEPTGNLDSANTK-----------RVMDIFLKINEGGTSIVMVTHERELA--ELTHRTLEM 212 (224)
T ss_dssp HTTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHH--TTSSEEEEE
T ss_pred HHHc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 9998 99999999998876655443 66677777655588999999998764 466777665
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-27 Score=243.32 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=147.7
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~--~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FGDRDV----TYLP--PK 81 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE---ECCEEC----CCCC--hh
Confidence 589999999999889999999999 9999999999999999955 57789999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..++|++ ||+||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 82 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 133 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHM------TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE---------------------- 133 (372)
T ss_dssp GGTEEEEEC------CC------CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG----------------------
T ss_pred hCcEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 35799999999999999 99999999833233344555667888888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 134 ---------------------------------------------------------~~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 134 ---------------------------------------------------------LLNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp ---------------------------------------------------------GTTSCTTTCCSSCHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHH
Confidence 23445678999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..+.+.... .++.++|.+..+. +.++++.+|+.+.. ..++.++.++.
T Consensus 157 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~ 216 (372)
T 1v43_A 157 VV------EPDVLLMDEPLSNLDAKLR-----------VAMRAEIKKLQQKLKVTTIYVTHDQVEA-MTMGDRIAVMN 216 (372)
T ss_dssp TT------CCSEEEEESTTTTSCHHHH-----------HHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred hc------CCCEEEEcCCCccCCHHHH-----------HHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 98 9999999999777554433 2666777766544 78999999987643 34666666664
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-27 Score=233.97 Aligned_cols=201 Identities=16% Similarity=0.222 Sum_probs=150.4
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|+++||+++|++ ..+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~~~~-~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY---IDNIKTND-LDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECTT-CCHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE---ECCEEccc-CCHHHH
Confidence 688999999974 46999999999 9999999999999999944 67889999 88873211 111111
Q ss_pred -ccccccEEEEeCCCccccccccccCCCcccceecccccc---chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 -RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE---QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 -~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~---~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
..+++.+|||+|++.+++.+ ||.||+.++.... .....+..+++.++++.+|+.+.
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 137 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLL------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER-------------- 137 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTS------CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG--------------
T ss_pred HHHhhccEEEEecCCccCCCC------cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh--------------
Confidence 11234699999999999999 9999998863211 22344455566777777776430
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
..++.+..+|+|++|+
T Consensus 138 ----------------------------------------------------------------~~~~~~~~LSgGq~QR 153 (235)
T 3tif_A 138 ----------------------------------------------------------------FANHKPNQLSGGQQQR 153 (235)
T ss_dssp ----------------------------------------------------------------GTTCCGGGSCHHHHHH
T ss_pred ----------------------------------------------------------------hhhCChhhCCHHHHHH
Confidence 1233456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||+.|.+..+.. ++.+++.+..+. +.++++.+|++++. .++.+
T Consensus 154 v~iAral~~------~p~llllDEPts~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vtHd~~~~--~~~d~ 214 (235)
T 3tif_A 154 VAIARALAN------NPPIILADQPTWALDSKTGE-----------KIMQLLKKLNEEDGKTVVVVTHDINVA--RFGER 214 (235)
T ss_dssp HHHHHHHTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHHCCEEEEECSCHHHH--TTSSE
T ss_pred HHHHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEcCCHHHH--HhCCE
Confidence 999999998 99999999998886655443 677777776554 88999999998853 46777
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 215 i~~l~ 219 (235)
T 3tif_A 215 IIYLK 219 (235)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77663
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-27 Score=235.49 Aligned_cols=202 Identities=20% Similarity=0.196 Sum_probs=152.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|+++||++.|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+. ........
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~i~--~~~~~~~~ 97 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII---IDGINLK--AKDTNLNK 97 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEESS--STTCCHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE---ECCEECC--CccccHHH
Confidence 3689999999999889999999999 9999999999999999954 56789999 8887331 11111122
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.+|||+|+..+++.+ ||+||+.++. ...+....+..+++..+++.+|+.+.
T Consensus 98 ~~~~i~~v~Q~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------------------- 152 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHM------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK------------------- 152 (263)
T ss_dssp HHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-------------------
T ss_pred HhCcEEEEeCCCcCCCCC------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-------------------
Confidence 345799999999999999 9999998852 11122333445567777887777541
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.++.+..+|+|++|++.|++
T Consensus 153 ------------------------------------------------------------~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 153 ------------------------------------------------------------AHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp ------------------------------------------------------------TTSCGGGSCHHHHHHHHHHH
T ss_pred ------------------------------------------------------------hcCChhhCCHHHHHHHHHHH
Confidence 22345568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+++... +++.++.++.
T Consensus 173 aL~~------~p~lllLDEPts~LD~~~~~-----------~~~~~l~~l~~~g~tvi~vtHd~~~~~-~~~d~v~~l~ 233 (263)
T 2olj_A 173 ALAM------EPKIMLFDEPTSALDPEMVG-----------EVLSVMKQLANEGMTMVVVTHEMGFAR-EVGDRVLFMD 233 (263)
T ss_dssp HHTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHHC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEcCCHHHHH-HhCCEEEEEE
Confidence 9998 99999999998886655543 667777776555889999999977543 3566666663
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-27 Score=243.24 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=153.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~--~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY---FDDVLV----NDIP--PK 73 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE---ECCEEC----CCCC--hh
Confidence 478999999999889999999999 9999999999999999955 57789999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||++.++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 74 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 125 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN---------------------- 125 (359)
T ss_dssp GTTEEEECSSCCCCTTS------CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG----------------------
T ss_pred hCcEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 45799999999999999 99999999733233444555567888888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+|+|++|+++|++++
T Consensus 126 ---------------------------------------------------------~~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 126 ---------------------------------------------------------LLDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ---------------------------------------------------------GTTSCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHH
Confidence 22344567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++++|||..+.+.... .++.++|.+..+. +.++++.+|+.+.. ..++.++.++.
T Consensus 149 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adri~vl~ 208 (359)
T 2yyz_A 149 VK------QPKVLLFDEPLSNLDANLR-----------MIMRAEIKHLQQELGITSVYVTHDQAEA-MTMASRIAVFN 208 (359)
T ss_dssp TT------CCSEEEEESTTTTSCHHHH-----------HHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred Hc------CCCEEEEECCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 98 9999999999777554433 2666677666543 78999999987643 34566666653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-27 Score=244.05 Aligned_cols=200 Identities=16% Similarity=0.211 Sum_probs=155.0
Q ss_pred CCCceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 76 DRDYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 76 ~~~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
..+.|.++||+++| +++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~ 83 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW---IGGKRV----TDLP 83 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTCC
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE---ECCEEC----CcCC
Confidence 34578999999999 8888999999999 9999999999999999955 57789999 888733 2211
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..++.+|||||+..++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 84 --~~~r~ig~v~Q~~~l~~~l------tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~------------------ 137 (355)
T 1z47_A 84 --PQKRNVGLVFQNYALFQHM------TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES------------------ 137 (355)
T ss_dssp --GGGSSEEEECGGGCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG------------------
T ss_pred --hhhCcEEEEecCcccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 2346799999999999999 99999999732223344455667888888888764
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++++..+|+|++|+++|
T Consensus 138 -------------------------------------------------------------~~~r~~~~LSGGq~QRval 156 (355)
T 1z47_A 138 -------------------------------------------------------------YANRFPHELSGGQQQRVAL 156 (355)
T ss_dssp -------------------------------------------------------------GTTSCGGGSCHHHHHHHHH
T ss_pred -------------------------------------------------------------HhcCCcccCCHHHHHHHHH
Confidence 2234456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +|+++|+|||..|.+..... ++.++|.+..+. +.++++.+|+.+.. ..++.++.+
T Consensus 157 ArAL~~------~P~lLLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~v 218 (355)
T 1z47_A 157 ARALAP------RPQVLLFDEPFAAIDTQIRR-----------ELRTFVRQVHDEMGVTSVFVTHDQEEA-LEVADRVLV 218 (355)
T ss_dssp HHHHTT------CCSEEEEESTTCCSSHHHHH-----------HHHHHHHHHHHHHTCEEEEECSCHHHH-HHHCSEEEE
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEE
Confidence 999998 99999999997775544432 666777766543 78999999997643 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 219 l~ 220 (355)
T 1z47_A 219 LH 220 (355)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-27 Score=242.75 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=154.8
Q ss_pred ceeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++||+++|+++. +|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+... ......
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i~~~-~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY---FDDRLVASN-GKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE---ETTEEEEET-TEESSC
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEECccc-ccccCC
Confidence 478999999999888 999999999 9999999999999999955 57789999 888843211 000112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||||+..++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+.
T Consensus 79 ~~~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------------------- 133 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNL------TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV------------------- 133 (353)
T ss_dssp GGGSCEEEEETTSCCCTTS------CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-------------------
T ss_pred hhhCCEEEEeCCCccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------------------
Confidence 2346799999999999999 999999997432333445556678888888888652
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.++.+..+|+|++|+++|++
T Consensus 134 ------------------------------------------------------------~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 134 ------------------------------------------------------------LNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp ------------------------------------------------------------TTSCGGGSCHHHHHHHHHHH
T ss_pred ------------------------------------------------------------hcCChhhCCHHHHHHHHHHH
Confidence 23345679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..... ++.++|.+..+ .+.++++.+|+.+.. ..++.++.++.
T Consensus 154 aL~~------~P~lLLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adri~vl~ 215 (353)
T 1oxx_K 154 ALVK------DPSLLLLDEPFSNLDARMRD-----------SARALVKEVQSRLGVTLLVVSHDPADI-FAIADRVGVLV 215 (353)
T ss_dssp HHTT------CCSEEEEESTTTTSCGGGHH-----------HHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred HHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 9998 99999999997776554443 66677776654 378999999987643 34666666664
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-27 Score=244.04 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=153.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+............
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY---IGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEE---ECCEECccccccccCCHh
Confidence 478999999999889999999999 9999999999999999955 57789999 888844220000001122
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..++|++ ||.||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 80 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 131 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHM------TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE---------------------- 131 (372)
T ss_dssp GSSEEEECSCCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG----------------------
T ss_pred HCCEEEEeCCCccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch----------------------
Confidence 45799999999999999 99999999732223334455667788888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 132 ---------------------------------------------------------~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 132 ---------------------------------------------------------LLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp ---------------------------------------------------------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHH
Confidence 22345567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..+.+.... .++.++|.+..+ .+.++++.+|+.+.. ..++.++.++.
T Consensus 155 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~ 214 (372)
T 1g29_1 155 VR------KPQVFLMDEPLSNLDAKLR-----------VRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAVMN 214 (372)
T ss_dssp HT------CCSEEEEECTTTTSCHHHH-----------HHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred hc------CCCEEEECCCCccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEEEe
Confidence 98 9999999999777554433 266666766654 378999999987643 34666666663
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-27 Score=236.64 Aligned_cols=202 Identities=16% Similarity=0.152 Sum_probs=153.2
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++||+++|++ ..+|++|||+| ||+|||||||||||++|+| .+.+|+|+ ++|+.+. .......
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~---~~G~~i~--~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL---FDNKPID--YSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECC--CSHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE---ECCEECC--cccccHH
Confidence 46899999999975 45999999999 9999999999999999954 57889999 8888331 0111122
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||+|++ ..+..+ ||.||+.|+....+.+..+..+++.++++.+|+.+
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------------------- 135 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSA------SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH------------------- 135 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSS------BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-------------------
T ss_pred HHhCcEEEEEcCcccccccC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 3456799999986 334467 99999998743334455566677888888888754
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++|+
T Consensus 136 ------------------------------------------------------------~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 136 ------------------------------------------------------------LKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp ------------------------------------------------------------GTTSBGGGSCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhcCCcccCCHHHHHHHHHH
Confidence 12234556899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||+.|.+..... .+.++|.+.. +.+.++++.+|+++... .++.++.++
T Consensus 156 raL~~------~P~lLlLDEPts~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vtHdl~~~~-~~~drv~~l 217 (275)
T 3gfo_A 156 GVLVM------EPKVLILDEPTAGLDPMGVS-----------EIMKLLVEMQKELGITIIIATHDIDIVP-LYCDNVFVM 217 (275)
T ss_dssp HHHTT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHHHCCEEEEEESCCSSGG-GGCSEEEEE
T ss_pred HHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHHhhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887655543 6666777665 44889999999987554 366677666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 218 ~ 218 (275)
T 3gfo_A 218 K 218 (275)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-27 Score=243.31 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=152.8
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~--~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY---FDEKDV----TELP--PK 73 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE---ECCEEC----CcCC--Hh
Confidence 488999999999889999999999 9999999999999999955 57789999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..++|++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 74 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 125 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK---------------------- 125 (362)
T ss_dssp GTTEEEECTTCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT----------------------
T ss_pred HCcEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 35799999999999999 99999999732222334455667888888888765
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 126 ---------------------------------------------------------~~~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 126 ---------------------------------------------------------LLNRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ---------------------------------------------------------CTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHH
Confidence 22344567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..|.+.... .++.++|.+..+. +.++++.+|+.+.. ..++.++.++.
T Consensus 149 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~ 208 (362)
T 2it1_A 149 VK------EPEVLLLDEPLSNLDALLR-----------LEVRAELKRLQKELGITTVYVTHDQAEA-LAMADRIAVIR 208 (362)
T ss_dssp TT------CCSEEEEESGGGGSCHHHH-----------HHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred Hc------CCCEEEEECccccCCHHHH-----------HHHHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEEEEE
Confidence 98 9999999999776554433 2666677666543 78999999987643 34666766664
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-27 Score=233.52 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=151.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee---------c
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI---------E 141 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~---------~ 141 (541)
.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~---~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII---VNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEccccccccccccc
Confidence 589999999999889999999999 9999999999999999955 56789999 88873310 0
Q ss_pred ccccccccccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.........++.+|||+|+..+++.+ ||.||+.++.. ..+....+..+++.++++.+|+.+.
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~l------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------- 145 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHM------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER----------- 145 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH-----------
T ss_pred cChhhHHHHhcceEEEecCcccCCCC------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------
Confidence 01011112345799999999999999 99999988521 1122333445567777888877541
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..++.+..+|+|+
T Consensus 146 -------------------------------------------------------------------~~~~~~~~LSgGq 158 (262)
T 1b0u_A 146 -------------------------------------------------------------------AQGKYPVHLSGGQ 158 (262)
T ss_dssp -------------------------------------------------------------------HHTSCGGGSCHHH
T ss_pred -------------------------------------------------------------------hhcCCcccCCHHH
Confidence 0123355689999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +|+++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+++... .++
T Consensus 159 ~qRv~lAraL~~------~p~lllLDEPts~LD~~~~~-----------~~~~~l~~l~~~g~tvi~vtHd~~~~~-~~~ 220 (262)
T 1b0u_A 159 QQRVSIARALAM------EPDVLLFDEPTSALDPELVG-----------EVLRIMQQLAEEGKTMVVVTHEMGFAR-HVS 220 (262)
T ss_dssp HHHHHHHHHHHT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHTTCCEEEECSCHHHHH-HHC
T ss_pred HHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhC
Confidence 999999999998 99999999998886655543 666677666555889999999977543 355
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 221 d~v~~l~ 227 (262)
T 1b0u_A 221 SHVIFLH 227 (262)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 6666653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-27 Score=231.23 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=151.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|+++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ... ..
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~~----~~~-~~ 84 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT---VFGKNV----VEE-PH 84 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEET----TTC-HH
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEC----Ccc-HH
Confidence 46799999999999889999999999 9999999999999999955 57789999 888732 211 12
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||+|+..+++.+ ||+||+.++....+....+..+++.++++.+|+.+..
T Consensus 85 ~~~~~i~~v~q~~~l~~~l------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------------------ 140 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNM------QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI------------------ 140 (256)
T ss_dssp HHHTTEEEECTTCCCCTTS------BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG------------------
T ss_pred HHhhcEEEEcCCCCCCCCC------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh------------------
Confidence 2345799999999999999 9999998862111222333345677788888875421
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++.+..+|+|++|++.|++
T Consensus 141 -------------------------------------------------------------~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 141 -------------------------------------------------------------KDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp -------------------------------------------------------------GSBGGGCCHHHHHHHHHHH
T ss_pred -------------------------------------------------------------cCChhhCCHHHHHHHHHHH
Confidence 1224468999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+++... .++.++.++.
T Consensus 160 aL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tiiivtHd~~~~~-~~~d~v~~l~ 220 (256)
T 1vpl_A 160 ALMV------NPRLAILDEPTSGLDVLNAR-----------EVRKILKQASQEGLTILVSSHNMLEVE-FLCDRIALIH 220 (256)
T ss_dssp HHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEEECCHHHHT-TTCSEEEEEE
T ss_pred HHHc------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHHhCCCEEEEEcCCHHHHH-HHCCEEEEEE
Confidence 9998 99999999998887655543 566667666555889999999877543 4566666653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-27 Score=230.96 Aligned_cols=200 Identities=17% Similarity=0.119 Sum_probs=150.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-cc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK-VR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~-~~ 148 (541)
+.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|+.+ .... ..
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 78 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDI----TNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----TTCCHHH
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCCHHH
Confidence 3589999999999989999999999 9999999999999999955 56789999 888732 2111 11
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccc--cc-----------hhhHhHhhhHHHHHHHhCCCCccchhhh
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP--EQ-----------VHRKSVKKGFDFTLMVVGESGLGKSTLV 215 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~--~~-----------~~~~e~~~~v~~~L~~vGL~g~~ks~l~ 215 (541)
..++.+|||+|+..+++.+ ||.||+.++... .+ ....+..+++.++++.+|+.+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 145 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEM------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH------- 145 (257)
T ss_dssp HHHHTEEECCCCCGGGGGS------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-------
T ss_pred HHhCCEEEEccCCccCCCC------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-------
Confidence 2245699999999999999 999999987322 11 112233445666677666643
Q ss_pred hhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC
Q psy91 216 NSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295 (541)
Q Consensus 216 ~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ 295 (541)
+.++.+..
T Consensus 146 ------------------------------------------------------------------------~~~~~~~~ 153 (257)
T 1g6h_A 146 ------------------------------------------------------------------------LYDRKAGE 153 (257)
T ss_dssp ------------------------------------------------------------------------GTTSBGGG
T ss_pred ------------------------------------------------------------------------hhCCCchh
Confidence 22334567
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+|+|++|++.|+++++. +|+++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+++..
T Consensus 154 LSgGqkQrv~iAraL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMT------NPKMIVMDEPIAGVAPGLAH-----------DIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp SCHHHHHHHHHHHHHHT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred CCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 89999999999999998 99999999998887655543 66667766655588999999998754
Q ss_pred hhcccceeEEEc
Q psy91 376 ERGVKLRLTVVD 387 (541)
Q Consensus 376 ~~~l~~rvnvIp 387 (541)
. .++.++.++.
T Consensus 217 ~-~~~d~v~~l~ 227 (257)
T 1g6h_A 217 L-NYIDHLYVMF 227 (257)
T ss_dssp G-GGCSEEEEEE
T ss_pred H-HhCCEEEEEE
Confidence 3 4666766664
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-26 Score=225.73 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=146.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc-
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR- 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~- 148 (541)
+.+.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII---FNGQDI----TNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----TTCCHHH
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEC----CCCCHHH
Confidence 3589999999999889999999999 9999999999999999955 57789999 888732 211111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhC-CCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVG-ESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vG-L~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||+|+..+++.+ ||.||+.++.... .......+.+..+++.+| +.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~l------tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~------------------- 131 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPEL------TVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKE------------------- 131 (240)
T ss_dssp HHHTTEEEECSSCCCCTTS------BHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHT-------------------
T ss_pred HHhCCEEEEecCCccCCCC------cHHHHHHHhhhcC-CCHHHHHHHHHHHHHHcccHhh-------------------
Confidence 1234699999999999999 9999999873221 112222334444454442 321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 132 ------------------------------------------------------------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 132 ------------------------------------------------------------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp ------------------------------------------------------------TTTSBSSSSCHHHHHHHHHH
T ss_pred ------------------------------------------------------------HhcCChhhCCHHHHHHHHHH
Confidence 22345667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||..|-+..... .+.++|.+..+.++++++.+|+++... .++.++.++.
T Consensus 152 raL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~~~~~g~tvi~vtHd~~~~~-~~~d~v~~l~ 213 (240)
T 1ji0_A 152 RALMS------RPKLLMMDEPSLGLAPILVS-----------EVFEVIQKINQEGTTILLVEQNALGAL-KVAHYGYVLE 213 (240)
T ss_dssp HHHTT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHTTCCEEEEESCHHHHH-HHCSEEEEEE
T ss_pred HHHHc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887655543 666677666556889999999976432 3556666653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-26 Score=227.11 Aligned_cols=204 Identities=13% Similarity=0.162 Sum_probs=153.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++++||++.|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|+. +.......
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~----~~~~~~~~ 82 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH---LLGQN----LNSWQPKA 82 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE---ETTEE----TTTSCHHH
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECCEE----CCcCCHHH
Confidence 4689999999999999999999999 9999999999999999954 57889999 88883 32222223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++||+|+..+++.+ ||.||+.++.... ......+++..+++.+|+.+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~-------------------- 134 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPF------SVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLAL-------------------- 134 (266)
T ss_dssp HHHHEEEECSCCCCCSCC------BHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTT--------------------
T ss_pred HhheEEEEecCCccCCCC------CHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhH--------------------
Confidence 445689999999998888 9999999874322 223344567777887777541
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.++.+..+|+|++|++.|+++
T Consensus 135 -----------------------------------------------------------~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 135 -----------------------------------------------------------AQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp -----------------------------------------------------------TTSBGGGCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hcCCcccCCHHHHHHHHHHHH
Confidence 122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+.-...+|+++|+|||+.|.+..... ++.++|.+..+. +.++++.+|+++... .++.++.++.
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~-----------~i~~~l~~l~~~~~~tvi~vtHdl~~~~-~~~d~v~vl~ 222 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQ-----------HTLRLLRQLTRQEPLAVCCVLHDLNLAA-LYADRIMLLA 222 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHH-----------HHHHHHHHHHHHSSEEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHH-----------HHHHHHHHHHHcCCCEEEEEEcCHHHHH-HhCCEEEEEE
Confidence 86421122269999999998887655543 677777777655 468999999987543 3566666663
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-26 Score=237.09 Aligned_cols=192 Identities=13% Similarity=0.137 Sum_probs=147.3
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++||+++|+++ +|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---~~g~~i----~~~~--~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL---LDGKDV----TDLS--PEK 71 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--HHH
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE---ECCEEC----CCCc--hhh
Confidence 6889999999988 999999999 9999999999999999955 57789999 888732 2211 234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+|||||+..++|++ ||+||+.|+....+..+. +++.++++.+|+.+
T Consensus 72 r~ig~v~Q~~~l~~~l------tv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~----------------------- 119 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHM------NVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEH----------------------- 119 (348)
T ss_dssp HTCEEECTTCCCCTTS------CHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTT-----------------------
T ss_pred CcEEEEecCcccCCCC------CHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCch-----------------------
Confidence 5799999999999999 999999987211111111 56777787777754
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|+++|+++++
T Consensus 120 --------------------------------------------------------~~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 120 --------------------------------------------------------LLDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp --------------------------------------------------------TTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 223445679999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|+++++|||..+.+.... .++.++|.+..+ .+.++++.+|+.+.. ..++.++.++.
T Consensus 144 ~------~P~lLLLDEP~s~LD~~~~-----------~~l~~~l~~l~~~~g~tii~vTHd~~~~-~~~adri~vl~ 202 (348)
T 3d31_A 144 T------NPKILLLDEPLSALDPRTQ-----------ENAREMLSVLHKKNKLTVLHITHDQTEA-RIMADRIAVVM 202 (348)
T ss_dssp S------CCSEEEEESSSTTSCHHHH-----------HHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHCSEEEEES
T ss_pred c------CCCEEEEECccccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 8 9999999999777554433 266777777654 478999999987643 34666776663
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-26 Score=226.33 Aligned_cols=202 Identities=15% Similarity=0.157 Sum_probs=145.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+.. .......
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~~~~--~~~~~~~ 94 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN---LFGKMPGK--VGYSAET 94 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTBCCC-----CCHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE---ECCEEccc--ccCCHHH
Confidence 3689999999999889999999999 9999999999999999955 57789999 88873210 0111122
Q ss_pred ccccEEEEeCCCcc--ccccccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 150 RQYPWGVVEGSTVL--TPSLIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l--~~~lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.++.+|||+|+..+ .+.+ ||+||+.++.... .....+..+++..+++.+|+.+
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~l------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------------- 153 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGE------RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA--------------- 153 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTS------BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG---------------
T ss_pred HcCcEEEEEcCcccccCCCC------CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh---------------
Confidence 34579999998654 3457 9999998863221 1112233455666777777643
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 154 ----------------------------------------------------------------~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 154 ----------------------------------------------------------------KAQQYIGYLSTGEKQR 169 (279)
T ss_dssp ----------------------------------------------------------------GTTSBGGGSCHHHHHH
T ss_pred ----------------------------------------------------------------HhcCChhhCCHHHHHH
Confidence 1123345689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcce--eeccccchhhhhcccc
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT--TIEKKSMDIEERGVKL 381 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~--~i~~~~~di~~~~l~~ 381 (541)
+.|+++++. +++++|+|||+.|.+..+.. .+.++|.+..+.++++ ++.+|+++.. ..+..
T Consensus 170 v~lAraL~~------~p~lLlLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tv~~iivtHd~~~~-~~~~d 231 (279)
T 2ihy_A 170 VMIARALMG------QPQVLILDEPAAGLDFIARE-----------SLLSILDSLSDSYPTLAMIYVTHFIEEI-TANFS 231 (279)
T ss_dssp HHHHHHHHT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHHCTTCEEEEEESCGGGC-CTTCC
T ss_pred HHHHHHHhC------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHHHCCCEEEEEEEecCHHHH-HHhCC
Confidence 999999998 99999999998887655543 5666666665458889 9999987643 34566
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 232 ~v~~l~ 237 (279)
T 2ihy_A 232 KILLLK 237 (279)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766663
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-25 Score=215.74 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=138.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..++++||+++|++ .+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ . .
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~~----~-----~ 75 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII---YNGVPI----T-----K 75 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEG----G-----G
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEh----h-----h
Confidence 36899999999998 9999999999 9999999999999999955 57789999 888732 2 1
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|+..+++.+ ||.||+.++...... ... .+++..+++.+|+..
T Consensus 76 ~~~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~--------------------- 126 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPRKI------SVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD--------------------- 126 (214)
T ss_dssp GGGGEEEECSSCCCCTTS------BHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC---------------------
T ss_pred hcCcEEEEeCCCcCCCCC------CHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc---------------------
Confidence 345799999999999999 999999886211111 111 344556666666543
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+ ++.+..+|+|++|++.|+++
T Consensus 127 ----------------------------------------------------------~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 127 ----------------------------------------------------------L-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp ----------------------------------------------------------T-TSBGGGSCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------C-CCChhhCCHHHHHHHHHHHH
Confidence 1 23345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+++..
T Consensus 148 L~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 148 LLV------NAEIYVLDDPVVAIDEDSKH-----------KVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp TTS------CCSEEEEESTTTTSCTTTHH-----------HHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred HHh------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 998 99999999998887665553 56666666654578899999987754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-25 Score=219.85 Aligned_cols=202 Identities=15% Similarity=0.125 Sum_probs=145.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++||+++|+++.+|++|||+| +|+|||||||||||++|+|. +.+|+|. ++|..+ .....
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~---~~g~~i----~~~~~ 91 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---FKGKDL----LALSP 91 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE---ETTEEG----GGSCH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE---ECCEEC----CcCCH
Confidence 3589999999999889999999999 99999999999999999774 5689999 888732 21111
Q ss_pred cc-ccccEEEEeCCCccccccccccCCCcccceeccccc----cc---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 148 RG-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP----EQ---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 148 ~~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~----~~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
.. .+..++||+|+..+++.+ ||.+|+.+.... .. ....+..+++.++++.+|+..
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~------tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------- 154 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGV------SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE----------- 154 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTC------BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-----------
T ss_pred HHHhhCCEEEEccCccccccc------cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-----------
Confidence 11 134589999999999999 999988764100 00 111222334555566555531
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVND 298 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~ 298 (541)
.+.++.+. .+|+
T Consensus 155 -------------------------------------------------------------------~~~~~~~~~~LSg 167 (267)
T 2zu0_C 155 -------------------------------------------------------------------DLLTRSVNVGFSG 167 (267)
T ss_dssp -------------------------------------------------------------------TTTTSBTTTTCCH
T ss_pred -------------------------------------------------------------------hHhcCCcccCCCH
Confidence 02233344 4999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhc
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERG 378 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~ 378 (541)
|++|++.|+++++. +|+++|+|||+.|.+..+.. .+.++|.+..+.++++++.+|+++....-
T Consensus 168 Gq~QRv~iAraL~~------~p~lLlLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tviivtHd~~~~~~~ 230 (267)
T 2zu0_C 168 GEKKRNDILQMAVL------EPELCILDESDSGLDIDALK-----------VVADGVNSLRDGKRSFIIVTHYQRILDYI 230 (267)
T ss_dssp HHHHHHHHHHHHHH------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHTTCCSSCEEEEECSSGGGGGTS
T ss_pred HHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeeCHHHHHhh
Confidence 99999999999998 99999999998886655543 66777777655688999999998754322
Q ss_pred ccceeEEEc
Q psy91 379 VKLRLTVVD 387 (541)
Q Consensus 379 l~~rvnvIp 387 (541)
...++.++.
T Consensus 231 ~~d~v~~l~ 239 (267)
T 2zu0_C 231 KPDYVHVLY 239 (267)
T ss_dssp CCSEEEEEE
T ss_pred cCCEEEEEE
Confidence 256776663
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-25 Score=221.16 Aligned_cols=195 Identities=16% Similarity=0.169 Sum_probs=145.8
Q ss_pred ceeeeccccccc--c---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVH--R---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~--~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.++||+++|+ + +.+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~---~~g~~~----~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL---YDGERK----KGY 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----CHH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---ECCEEC----chH
Confidence 378999999997 4 57999999999 9999999999999999955 56789999 888732 111
Q ss_pred ccccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC--Cccchhhhhhhcccc
Q psy91 146 KVRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES--GLGKSTLVNSLFLSD 222 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~--g~~ks~l~~~l~gl~ 222 (541)
..++.+|||+|++ .+++.+ ||+||+.++.... ....+..+++..+++.+|+. +
T Consensus 75 ---~~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~-------------- 130 (266)
T 2yz2_A 75 ---EIRRNIGIAFQYPEDQFFAE------RVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDS-------------- 130 (266)
T ss_dssp ---HHGGGEEEECSSGGGGCCCS------SHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHH--------------
T ss_pred ---HhhhhEEEEeccchhhcCCC------cHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcc--------------
Confidence 2345799999995 566778 9999999863211 22223344566777777765 3
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.++.+..+|+|++|
T Consensus 131 -----------------------------------------------------------------~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 131 -----------------------------------------------------------------FKDRVPFFLSGGEKR 145 (266)
T ss_dssp -----------------------------------------------------------------HTTCCGGGSCHHHHH
T ss_pred -----------------------------------------------------------------cccCChhhCCHHHHH
Confidence 112334568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+++... .++.+
T Consensus 146 Rv~lAraL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tii~vtHd~~~~~-~~~d~ 207 (266)
T 2yz2_A 146 RVAIASVIVH------EPDILILDEPLVGLDREGKT-----------DLLRIVEKWKTLGKTVILISHDIETVI-NHVDR 207 (266)
T ss_dssp HHHHHHHHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCCTTTG-GGCSE
T ss_pred HHHHHHHHHc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998887665543 666777766555889999999977543 35566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 208 v~~l~ 212 (266)
T 2yz2_A 208 VVVLE 212 (266)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-25 Score=216.52 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=145.1
Q ss_pred ceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
-|.++||+++| +++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~---i~g~~~----~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL---IDGHDL----ALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEET----TTSCHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEh----hhCCHH
Confidence 47899999999 4678999999999 9999999999999999955 57789999 888732 221122
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.+|||+|++.+++ . ||+||+.++. . .. ..+.+..+++.+|+....+... .|+.
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~------tv~enl~~~~-~-~~----~~~~~~~~l~~~~l~~~~~~~~----~gl~------ 136 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-R------SIIDNISLAN-P-GM----SVEKVIYAAKLAGAHDFISELR----EGYN------ 136 (247)
T ss_dssp HHHHHEEEECSSCCCTT-S------BHHHHHTTTC-T-TC----CHHHHHHHHHHHTCHHHHHTST----TGGG------
T ss_pred HHHhcEEEEeCCCcccc-c------cHHHHHhccC-C-CC----CHHHHHHHHHHhChHHHHHhCc----chhh------
Confidence 33457999999988874 7 9999998862 1 11 1234556677777654211100 0110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
. .....+..+|+|++|++.|++
T Consensus 137 ---------------------------------------------------------~-~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 137 ---------------------------------------------------------T-IVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp ---------------------------------------------------------C-BCSTTTTCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------------h-hhhCCCCCCCHHHHHHHHHHH
Confidence 0 123346679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..+.. .+.++|.+.. .++++++.+|+++... ...++.++.
T Consensus 159 aL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~-~g~tviivtH~~~~~~--~~d~v~~l~ 217 (247)
T 2ff7_A 159 ALVN------NPKILIFDEATSALDYESEH-----------VIMRNMHKIC-KGRTVIIIAHRLSTVK--NADRIIVME 217 (247)
T ss_dssp HHTT------CCSEEEECCCCSCCCHHHHH-----------HHHHHHHHHH-TTSEEEEECSSGGGGT--TSSEEEEEE
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEeCCHHHHH--hCCEEEEEE
Confidence 9998 99999999998886655543 5666666663 4789999999987553 366776664
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-25 Score=219.71 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=142.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.++||+++|+++.+|++|||+| ||+|||||||||||++|+|. +.+|+|. ++|..+ ......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~---~~g~~~----~~~~~~ 75 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL---LDGENI----LELSPD 75 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE---ETTEEC----TTSCHH
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE---ECCEEC----CCCCHH
Confidence 478999999999889999999999 99999999999999999763 5789999 888732 211111
Q ss_pred -cccccEEEEeCCCccccccccccCCCcccceeccccc-cc--hhhHhHhhhHHHHHHHhCCC-Cccchhhhhhhccccc
Q psy91 149 -GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQ--VHRKSVKKGFDFTLMVVGES-GLGKSTLVNSLFLSDL 223 (541)
Q Consensus 149 -~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~--~~~~e~~~~v~~~L~~vGL~-g~~ks~l~~~l~gl~~ 223 (541)
..+..++||+|++.+++.+ ||.+|+.++... .. ....+..+++.++++.+|+. +
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------------- 134 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGV------TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES--------------- 134 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSC------BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG---------------
T ss_pred HHHhCcEEEeccCCccccCC------CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh---------------
Confidence 1234589999999999999 999999875211 01 11122334566667776663 2
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC-CCCCCCc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN-VNDRQGK 302 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~-ls~g~~q 302 (541)
+.++.+.. +|+|++|
T Consensus 135 ----------------------------------------------------------------~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 135 ----------------------------------------------------------------YLSRYLNEGFSGGEKK 150 (250)
T ss_dssp ----------------------------------------------------------------GGGSBTTCC----HHH
T ss_pred ----------------------------------------------------------------HhcCCcccCCCHHHHH
Confidence 11233455 8999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc-cc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV-KL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l-~~ 381 (541)
++.|+++++. +|+++|+|||+.|.+..+.. .+.++|.+..+.++++++.+|+++... .+ ..
T Consensus 151 rv~iAraL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~~~d 212 (250)
T 2d2e_A 151 RNEILQLLVL------EPTYAVLDETDSGLDIDALK-----------VVARGVNAMRGPNFGALVITHYQRILN-YIQPD 212 (250)
T ss_dssp HHHHHHHHHH------CCSEEEEECGGGTTCHHHHH-----------HHHHHHHHHCSTTCEEEEECSSSGGGG-TSCCS
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEecCHHHHH-HhcCC
Confidence 9999999998 99999999998876655443 666777766556889999999987543 34 36
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 213 ~v~~l~ 218 (250)
T 2d2e_A 213 KVHVMM 218 (250)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 676664
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-25 Score=217.60 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=144.1
Q ss_pred eeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
++++||+++|++ +|++|||+| ||+|||||||||||++|+| .|.+|+|. ++|..+ ... ...++
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~--~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR---LNGADI----TPL--PPERR 70 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTS--CTTTS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CcC--chhhC
Confidence 678999999975 599999997 9999999999999999955 57789999 888732 211 12345
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.+|||+|+..+++.+ ||+||+.++....+.. ...+++.++++.+|+.+
T Consensus 71 ~i~~v~q~~~l~~~l------tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~------------------------ 118 (240)
T 2onk_A 71 GIGFVPQDYALFPHL------SVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAH------------------------ 118 (240)
T ss_dssp CCBCCCSSCCCCTTS------CHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTT------------------------
T ss_pred cEEEEcCCCccCCCC------cHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHH------------------------
Confidence 799999999999999 9999999873221211 12445666777776643
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 119 -------------------------------------------------------~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 119 -------------------------------------------------------LLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp -------------------------------------------------------TTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1233455689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|+++|+|||..|-+..+.. .+.+++.+..+ .+.++++.+|+++... .++.++.++.
T Consensus 144 ------~p~lllLDEPts~LD~~~~~-----------~~~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~d~i~~l~ 201 (240)
T 2onk_A 144 ------QPRLLLLDEPLSAVDLKTKG-----------VLMEELRFVQREFDVPILHVTHDLIEAA-MLADEVAVML 201 (240)
T ss_dssp ------CCSSBEEESTTSSCCHHHHH-----------HHHHHHHHHHHHHTCCEEEEESCHHHHH-HHCSEEEEEE
T ss_pred ------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99999999998886655443 66667766654 3789999999876433 3556666653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-25 Score=217.97 Aligned_cols=203 Identities=14% Similarity=0.179 Sum_probs=142.3
Q ss_pred CCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|.++||++.|++ +.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ...
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~i----~~~ 86 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL---LDGEPL----VQY 86 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEG----GGB
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---ECCEEc----ccC
Confidence 346899999999986 78999999999 9999999999999999955 57789999 888733 221
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....+++.+|||+|+..+++ . ||+||+.++.... ... ..+...+...++.
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~-~------tv~enl~~~~~~~--~~~---~~~~~~~~~~~~~------------------ 136 (271)
T 2ixe_A 87 DHHYLHTQVAAVGQEPLLFG-R------SFRENIAYGLTRT--PTM---EEITAVAMESGAH------------------ 136 (271)
T ss_dssp CHHHHHHHEEEECSSCCCCS-S------BHHHHHHTTCSSC--CCH---HHHHHHHHHHTCH------------------
T ss_pred CHHHHhccEEEEecCCcccc-c------cHHHHHhhhcccC--ChH---HHHHHHHHHHhHH------------------
Confidence 12233457999999988775 7 9999999863111 110 1111112222211
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcc
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.+++.+ .... ..++.+..+|+|++|+
T Consensus 137 ---------------------------------------------------~~l~~l~~gl~~-~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 137 ---------------------------------------------------DFISGFPQGYDT-EVGETGNQLSGGQRQA 164 (271)
T ss_dssp ---------------------------------------------------HHHHHSTTGGGS-BCCGGGTTSCHHHHHH
T ss_pred ---------------------------------------------------HHHHhhhcchhh-hhcCCcCCCCHHHHHH
Confidence 112222 1111 2334566799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .++++++.+|+++... ...+
T Consensus 165 v~lAraL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~~~~g~tviivtHd~~~~~--~~d~ 225 (271)
T 2ixe_A 165 VALARALIR------KPRLLILDNATSALDAGNQL-----------RVQRLLYESPEWASRTVLLITQQLSLAE--RAHH 225 (271)
T ss_dssp HHHHHHHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHCTTTTTSEEEEECSCHHHHT--TCSE
T ss_pred HHHHHHHhc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHhhcCCEEEEEeCCHHHHH--hCCE
Confidence 999999998 99999999998886655543 66677766643 4789999999987654 2667
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 226 v~~l~ 230 (271)
T 2ixe_A 226 ILFLK 230 (271)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=212.12 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=146.0
Q ss_pred eeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|.++||+++| +++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|.. +.......+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~----~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT---IDGQP----IDNISLENW 74 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE---ETTEE----STTTSCSCC
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEE----hhhCCHHHH
Confidence 6889999999 6678999999999 9999999999999999955 57789999 88873 222222334
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++||+|++.+++ . ||+||+.++..+ .. ..+.+..+++.+|+.+..+.... |+.
T Consensus 75 ~~~i~~v~q~~~l~~-~------tv~enl~~~~~~-~~----~~~~~~~~l~~~~l~~~~~~~~~----gl~-------- 130 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-G------TIRENLTYGLEG-DY----TDEDLWQVLDLAFARSFVENMPD----QLN-------- 130 (243)
T ss_dssp TTTCCEECCSSCCCC-E------EHHHHTTSCTTS-CS----CHHHHHHHHHHHTCTTTTTSSTT----GGG--------
T ss_pred HhhEEEEcCCCcccc-c------cHHHHHhhhccC-CC----CHHHHHHHHHHhChHHHHHhCcc----chh--------
Confidence 567999999988775 7 999999986211 11 12345667788887653221100 000
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
. ..+..+..+|+|++|++.|++++
T Consensus 131 -------------------------------------------------------~-~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 131 -------------------------------------------------------T-EVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp -------------------------------------------------------C-EESTTSBCCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------c-hhccCcCcCCHHHHHHHHHHHHH
Confidence 0 11234567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|-+..+.. .+.++|.+.. .++++++.+|+++... ...++.++.
T Consensus 155 ~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~-~~~tvi~vtH~~~~~~--~~d~v~~l~ 211 (243)
T 1mv5_A 155 LR------NPKILMLDEATASLDSESES-----------MVQKALDSLM-KGRTTLVIAHRLSTIV--DADKIYFIE 211 (243)
T ss_dssp HH------CCSEEEEECCSCSSCSSSCC-----------HHHHHHHHHH-TTSEEEEECCSHHHHH--HCSEEEEEE
T ss_pred hc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEeCChHHHH--hCCEEEEEE
Confidence 98 99999999997776655553 5666666654 4789999999987543 366777764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=214.18 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=140.9
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.+.++||++.|+ ++.+|+++||+| +|+|||||||||||++|+|...+ ..|++. .+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-------~~G~I~-----------~~ 65 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-------IQGKIE-----------VY 65 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-------SEEEEE-----------EC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCcEEE-----------Ee
Confidence 589999999998 888999999999 99999999999999999765433 234411 13
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+.+|||+|+..+++.+ ||.||+.++.... + .......+++..+++.+|+.+.
T Consensus 66 ~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 121 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAY------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL------------------ 121 (253)
T ss_dssp SCEEEECSCCCCSSCC------BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG------------------
T ss_pred ccEEEEcCCCccCCCC------CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH------------------
Confidence 4699999999999889 9999999873221 1 1122334556777777776541
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.++.+..+|+|++|++.|+
T Consensus 122 -------------------------------------------------------------~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 122 -------------------------------------------------------------AKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp -------------------------------------------------------------TTSBGGGSCHHHHHHHHHH
T ss_pred -------------------------------------------------------------hcCChhhCCHHHHHHHHHH
Confidence 1223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+++... ++..++.++
T Consensus 141 raL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~d~v~~l 202 (253)
T 2nq2_C 141 RAIAS------ECKLILLDEPTSALDLANQD-----------IVLSLLIDLAQSQNMTVVFTTHQPNQVV-AIANKTLLL 202 (253)
T ss_dssp HHHHT------TCSEEEESSSSTTSCHHHHH-----------HHHHHHHHHHHTSCCEEEEEESCHHHHH-HHCSEEEEE
T ss_pred HHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998886655543 666677666555 789999999877543 356666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 203 ~ 203 (253)
T 2nq2_C 203 N 203 (253)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-25 Score=220.87 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=144.6
Q ss_pred CCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.|.++||+++|+ ++.+|++|||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +.....
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~---i~G~~----i~~~~~ 123 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR---IDGQD----ISQVTQ 123 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE---ETTEE----TTSBCH
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE---ECCEE----cccCCH
Confidence 35699999999995 577999999999 9999999999999999944 67889999 88883 333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.+|||+|++.+| .. ||+||+.|+..... ...+..++..+++...... .-.|+..
T Consensus 124 ~~~r~~i~~v~Q~~~lf-~~------Tv~eNi~~~~~~~~------~~~~~~~~~~~~l~~~i~~----lp~gl~t---- 182 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLF-ND------TIADNIRYGRVTAG------NDEVEAAAQAAGIHDAIMA----FPEGYRT---- 182 (306)
T ss_dssp HHHHHTEEEECSSCCCC-SE------EHHHHHHTTSTTCC------HHHHHHHHHHHTCHHHHHH----STTGGGC----
T ss_pred HHHhcceEEEecCCccC-cc------cHHHHHHhhcccCC------HHHHHHHHHHhCcHHHHHh----ccchhhh----
Confidence 34566899999999887 46 99999999842211 1234455666665431110 0001100
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
........+|+|++|+++|+
T Consensus 183 ------------------------------------------------------------~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 183 ------------------------------------------------------------QVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp ------------------------------------------------------------EESTTSBCCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------HhcCCcCCCCHHHHHHHHHH
Confidence 11123456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..... .+.+.|.+.. .++|+++.+|+++.... ..++.++.
T Consensus 203 RAL~~------~p~iLlLDEPts~LD~~~~~-----------~i~~~l~~l~-~~~Tvi~itH~l~~~~~--aD~i~vl~ 262 (306)
T 3nh6_A 203 RTILK------APGIILLDEATSALDTSNER-----------AIQASLAKVC-ANRTTIVVAHRLSTVVN--ADQILVIK 262 (306)
T ss_dssp HHHHH------CCSEEEEECCSSCCCHHHHH-----------HHHHHHHHHH-TTSEEEEECCSHHHHHT--CSEEEEEE
T ss_pred HHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEEcChHHHHc--CCEEEEEE
Confidence 99998 99999999998876654443 4555555443 36799999999876543 67777764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-24 Score=212.32 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=142.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++ .+|+++||+| +|+|||||||||||++|+| .+. |+|. ++|..+ .......+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~---~~g~~~----~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ---FAGQPL----EAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE---ETTEEG----GGSCHHHH
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE---ECCEEC----CcCCHHHH
Confidence 5789999887 6999999999 9999999999999999955 467 9999 888732 22112233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||+|+..+++.+ ||+||+.++.... .. .+++..+++.+|+.+.
T Consensus 72 ~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~-~~----~~~~~~~l~~~~l~~~--------------------- 119 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFAT------PVWHYLTLHQHDK-TR----TELLNDVAGALALDDK--------------------- 119 (249)
T ss_dssp HHHEEEECSCCCCCTTC------BHHHHHHTTCSST-TC----HHHHHHHHHHTTCGGG---------------------
T ss_pred hceEEEECCCCccCCCC------cHHHHHHHhhccC-Cc----HHHHHHHHHHcCChhH---------------------
Confidence 45799999999999889 9999999873221 11 3456677777777541
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.++.+..+|+|++|++.|++++
T Consensus 120 ----------------------------------------------------------~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 120 ----------------------------------------------------------LGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp ----------------------------------------------------------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------hcCChhhCCHHHHHHHHHHHHH
Confidence 1223456899999999999999
Q ss_pred EEeeecCeeee-------EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 311 MDIEERGVKLR-------LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 311 ~~i~e~gv~~~-------L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+. +++ ++|+|||..|.+..... .+.++|.+..+.++++++.+|+++... .+..++
T Consensus 142 ~~------~p~~~~~~~~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tviivtHd~~~~~-~~~d~v 203 (249)
T 2qi9_C 142 LQ------ITPQANPAGQLLLLDEPMNSLDVAQQS-----------ALDKILSALSQQGLAIVMSSHDLNHTL-RHAHRA 203 (249)
T ss_dssp HH------HCTTTCTTCCEEEESSTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEE
T ss_pred Hc------CCCcCCCCCeEEEEECCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEE
Confidence 98 899 99999998887655543 666777766555889999999977543 355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 204 ~~l~ 207 (249)
T 2qi9_C 204 WLLK 207 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-23 Score=206.47 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=141.5
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++||+++|++ +.+|++|||+| ||+|||||||||||++|+|. +..|+|. ++|..+ .....
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~---i~g~~i----~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK---IGGKNV----NKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEE---ETTEEG----GGBCH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEE---ECCEEh----hhcCH
Confidence 35899999999986 46999999999 99999999999999999553 2379999 888732 22112
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+++ . ||+||+.++... .. .+.+..+++.+|+....+ .+..
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~------tv~enl~~~~~~--~~----~~~~~~~l~~~~l~~~~~--------~l~~---- 143 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-E------TIKYNILYGKLD--AT----DEEVIKATKSAQLYDFIE--------ALPK---- 143 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-E------EHHHHHHTTCTT--CC----HHHHHHHHHHTTCHHHHH--------TSTT----
T ss_pred HHHhccEEEEcCCCcccc-c------CHHHHHhccCCC--CC----HHHHHHHHHHhCCHHHHH--------hccc----
Confidence 234467999999998874 7 999999886321 11 123445566666532100 0000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ +++ ...+.+..+|+|++|++.|+
T Consensus 144 --------------------------------~------------------~~~------~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 144 --------------------------------K------------------WDT------IVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp --------------------------------G------------------GGC------EESSSSBCCCHHHHHHHHHH
T ss_pred --------------------------------c------------------ccc------cccCCcCcCCHHHHHHHHHH
Confidence 0 000 11234567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+++... ...++.++.
T Consensus 168 raL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~l~~-~~tviivtH~~~~~~--~~d~i~~l~ 227 (260)
T 2ghi_A 168 RCLLK------DPKIVIFDEATSSLDSKTEY-----------LFQKAVEDLRK-NRTLIIIAHRLSTIS--SAESIILLN 227 (260)
T ss_dssp HHHHH------CCSEEEEECCCCTTCHHHHH-----------HHHHHHHHHTT-TSEEEEECSSGGGST--TCSEEEEEE
T ss_pred HHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEcCCHHHHH--hCCEEEEEE
Confidence 99998 99999999998886655443 56666666544 789999999987643 366666664
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-24 Score=221.18 Aligned_cols=201 Identities=11% Similarity=0.113 Sum_probs=142.5
Q ss_pred Cceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++||+++| ++..+|++|||+| +|+|||||||||||++|+|. +.+|+|. ++|++ +...+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~---i~G~~----i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQ---IDGVS----WDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEE---ESSCB----TTSSCHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEE---ECCEE----CCcCChH
Confidence 569999999999 6678999999999 99999999999999999542 3689999 88883 3333333
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||||++.+++ . ||++|+.+... . ..+++.++++.+|+.+..++.... +
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~------tv~enl~~~~~---~----~~~~v~~~l~~~~L~~~~~~~p~~----l------- 145 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-G------TFRKNLDPNAA---H----SDQEIWKVADEVGLRSVIEQFPGK----L------- 145 (390)
T ss_dssp HHHHTEEEESCCCCCCS-E------EHHHHHCTTCC---S----CHHHHHHHHHHTTCHHHHTTSTTG----G-------
T ss_pred HHhCCEEEEcCCcccCc-c------CHHHHhhhccc---c----CHHHHHHHHHHhCCHHHHhhcccc----c-------
Confidence 34567999999999986 7 99999975421 1 124566778888876532221110 0
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++ ........+|+|++|+++|++
T Consensus 146 ---------------------------------------------------~~------~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 146 ---------------------------------------------------DF------VLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp ---------------------------------------------------GC------EECTTTTTSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------cc------ccccccccCCHHHHHHHHHHH
Confidence 00 001123458999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..+.+.... .++.+.|.+.. .+.++++.+|+.+. ...+.++.++.
T Consensus 169 AL~~------~P~lLLLDEPts~LD~~~~-----------~~l~~~l~~~~-~~~tvi~vtHd~e~--~~~aDri~vl~ 227 (390)
T 3gd7_A 169 SVLS------KAKILLLDEPSAHLDPVTY-----------QIIRRTLKQAF-ADCTVILCEARIEA--MLECDQFLVIE 227 (390)
T ss_dssp HHHT------TCCEEEEESHHHHSCHHHH-----------HHHHHHHHTTT-TTSCEEEECSSSGG--GTTCSEEEEEE
T ss_pred HHhc------CCCEEEEeCCccCCCHHHH-----------HHHHHHHHHHh-CCCEEEEEEcCHHH--HHhCCEEEEEE
Confidence 9998 9999999999665443332 25555555432 36788999998653 33477777764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-23 Score=203.22 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=137.9
Q ss_pred eeeecccccccc----cceeecceEEE-----EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++||+++|++ +.+|+++||+| +|+|||||||||||++|+|. |.+|+|. ++|..+ ... ..
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~---~~g~~~----~~~--~~ 72 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLLPYSGNIF---INGMEV----RKI--RN 72 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSSCCEEEEE---ETTEEG----GGC--SC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCcEEE---ECCEEC----cch--HH
Confidence 688999999987 78999999998 99999999999999999444 7889999 888732 211 22
Q ss_pred ccccEE-EEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC-CccchhhhhhhccccccCCC
Q psy91 150 RQYPWG-VVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES-GLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 150 ~~~~~g-~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~-g~~ks~l~~~l~gl~~~~~~ 227 (541)
++.++ ||+|+..+ .+ ||.||+.++.. .. ....+++..+++.+|+. +.
T Consensus 73 -~~~i~~~v~Q~~~l--~~------tv~enl~~~~~---~~-~~~~~~~~~~l~~~gl~~~~------------------ 121 (263)
T 2pjz_A 73 -YIRYSTNLPEAYEI--GV------TVNDIVYLYEE---LK-GLDRDLFLEMLKALKLGEEI------------------ 121 (263)
T ss_dssp -CTTEEECCGGGSCT--TS------BHHHHHHHHHH---HT-CCCHHHHHHHHHHTTCCGGG------------------
T ss_pred -hhheEEEeCCCCcc--CC------cHHHHHHHhhh---hc-chHHHHHHHHHHHcCCChhH------------------
Confidence 45799 99999877 78 99999987521 00 11233456666666664 21
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.++.+..+|+|++|++.|+
T Consensus 122 -------------------------------------------------------------~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 122 -------------------------------------------------------------LRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp -------------------------------------------------------------GGSBGGGSCHHHHHHHHHH
T ss_pred -------------------------------------------------------------hcCChhhCCHHHHHHHHHH
Confidence 1223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc-eeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL-RLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~-rvnvI 386 (541)
++++. +|+++|+|||..|.+..... .+.++|.+..+ ++++.+|+++... .++. ++.++
T Consensus 141 raL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~L~~~~~---tviivtHd~~~~~-~~~d~~i~~l 199 (263)
T 2pjz_A 141 LALAS------QPEIVGLDEPFENVDAARRH-----------VISRYIKEYGK---EGILVTHELDMLN-LYKEYKAYFL 199 (263)
T ss_dssp HHHHT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHSCS---EEEEEESCGGGGG-GCTTSEEEEE
T ss_pred HHHHh------CCCEEEEECCccccCHHHHH-----------HHHHHHHHhcC---cEEEEEcCHHHHH-HhcCceEEEE
Confidence 99998 99999999998886655443 56666665543 8889999876543 3566 76666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 200 ~ 200 (263)
T 2pjz_A 200 V 200 (263)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-22 Score=193.68 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=129.9
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
...|.++||+++|+ ++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g----------- 69 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSG----------- 69 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ECS-----------
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE---ECC-----------
Confidence 34689999999995 578999999999 9999999999999999955 46678887 555
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++||+|++.+++ . ||+||+.++... .. ..+..+++.+++...
T Consensus 70 ------~i~~v~q~~~~~~-~------tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~----------------- 112 (229)
T 2pze_A 70 ------RISFCSQFSWIMP-G------TIKENIIFGVSY---DE----YRYRSVIKACQLEED----------------- 112 (229)
T ss_dssp ------CEEEECSSCCCCS-B------CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHH-----------------
T ss_pred ------EEEEEecCCcccC-C------CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHH-----------------
Confidence 3799999988765 6 999999986211 11 112223333333210
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc-cccCCCCCCCCCCCCCCcceE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~-~~~~~~~~~~~ls~g~~q~v~ 305 (541)
++.+.. ...........+|+|++|++.
T Consensus 113 ----------------------------------------------------~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 113 ----------------------------------------------------ISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp ----------------------------------------------------HTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred ----------------------------------------------------HHhCcccccccccCCCCcCCHHHHHHHH
Confidence 000000 000112335679999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh-hhhcccCcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF-NDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l-~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|-+..+.. .+.+.+ .+.. .++++++.+|+++... ...++.
T Consensus 141 lAral~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~~-~~~tvi~vtH~~~~~~--~~d~v~ 200 (229)
T 2pze_A 141 LARAVYK------DADLYLLDSPFGYLDVLTEK-----------EIFESCVCKLM-ANKTRILVTSKMEHLK--KADKIL 200 (229)
T ss_dssp HHHHHHS------CCSEEEEESTTTTSCHHHHH-----------HHHHHCCCCCT-TTSEEEEECCCHHHHH--HCSEEE
T ss_pred HHHHHhc------CCCEEEEECcccCCCHHHHH-----------HHHHHHHHHhh-CCCEEEEEcCChHHHH--hCCEEE
Confidence 9999998 99999999998886655443 444442 3332 3678999999987543 366666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 201 ~l~ 203 (229)
T 2pze_A 201 ILH 203 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-22 Score=218.28 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=146.4
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +++|+|+||++ ||+||||||||||+++|++ .|++|+|. ++|.++ .....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---~~g~~~----~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC---LDGHDV----RDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---ECCEEh----hhCCH
Confidence 46999999999975 67999999999 9999999999999999944 57889999 888733 22222
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+++ . |++||+.++..+. . ..+.+.++++.+|+.+..++.. .|++.
T Consensus 413 ~~~~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~p----~g~~t---- 472 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFN-D------TIANNIAYAAEGE-Y----TREQIEQAARQAHAMEFIENMP----QGLDT---- 472 (582)
T ss_pred HHHhcCeEEEcCCCcccc-c------cHHHHHhccCCCC-C----CHHHHHHHHHHCCCHHHHHhCc----ccccc----
Confidence 344567999999998874 6 9999999973221 1 1234666777777754211100 00000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
........+|+|++|+++|+
T Consensus 473 ------------------------------------------------------------~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 473 ------------------------------------------------------------VIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred ------------------------------------------------------------hhcCCCCcCCHHHHHHHHHH
Confidence 01123456999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..+.. .+.+.+.+..+ ++|+++.+|+++... ...++.+++
T Consensus 493 ral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~~-~~tvi~itH~~~~~~--~~d~i~~l~ 552 (582)
T 3b5x_A 493 RALLR------DAPVLILDEATSALDTESER-----------AIQAALDELQK-NKTVLVIAHRLSTIE--QADEILVVD 552 (582)
T ss_pred HHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHcC-CCEEEEEecCHHHHH--hCCEEEEEE
Confidence 99999 99999999998876655543 55566665544 889999999877543 466776664
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-22 Score=218.62 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=145.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++|++++|++ +++|+|+||+| ||+||||||||||+++|++ .|.+|+|. ++|.+ +.....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~---~~g~~----~~~~~~ 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---MDGHD----LREYTL 412 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE---ETTEE----TTTBCH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE---ECCEE----ccccCH
Confidence 46999999999974 67999999999 9999999999999999944 57789999 88873 322222
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+++ . |++||+.++..+. . ..+++.++++.+|+.+..++.. .|++.
T Consensus 413 ~~~~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~p----~g~~~---- 472 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFN-D------TVANNIAYARTEE-Y----SREQIEEAARMAYAMDFINKMD----NGLDT---- 472 (582)
T ss_dssp HHHHHTEEEECSSCCCCS-S------BHHHHHHTTTTSC-C----CHHHHHHHHHTTTCHHHHHHST----TGGGS----
T ss_pred HHHHhhCeEEccCCcCCC-C------CHHHHHhccCCCC-C----CHHHHHHHHHHcCCHHHHHhcc----ccccc----
Confidence 334567999999998875 6 9999999873211 1 1234566676666643211100 01110
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
........+|+|++|+++|+
T Consensus 473 ------------------------------------------------------------~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 473 ------------------------------------------------------------IIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp ------------------------------------------------------------BCCTTSCSSCHHHHHHHHHH
T ss_pred ------------------------------------------------------------cccCCCCCCCHHHHHHHHHH
Confidence 11223457999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..+.. .+.+.+.+..+ ++|+++.+|+++... ...++.+++
T Consensus 493 ral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~~-~~tvi~itH~~~~~~--~~d~i~~l~ 552 (582)
T 3b60_A 493 RALLR------DSPILILDEATSALDTESER-----------AIQAALDELQK-NRTSLVIAHRLSTIE--QADEIVVVE 552 (582)
T ss_dssp HHHHH------CCSEEEEETTTSSCCHHHHH-----------HHHHHHHHHHT-TSEEEEECSCGGGTT--TCSEEEEEE
T ss_pred HHHHh------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHhC-CCEEEEEeccHHHHH--hCCEEEEEE
Confidence 99998 99999999998876655543 55556655544 889999999987543 466777764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-22 Score=193.16 Aligned_cols=188 Identities=16% Similarity=0.131 Sum_probs=128.8
Q ss_pred ceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++||+++|+ ++.+|+++||+| ||+|||||||||||++|++. +.+|+|. ++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA---IKG------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE---ECS-------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECC-------------
Confidence 478999999998 578999999999 99999999999999999654 5677777 555
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++||+|++.+ +.+ ||+||+.++... .. .....+++.+++.. .+ +..+.
T Consensus 67 ----~i~~v~Q~~~~-~~~------tv~enl~~~~~~---~~----~~~~~~~~~~~l~~--------~~-~~~~~---- 115 (237)
T 2cbz_A 67 ----SVAYVPQQAWI-QND------SLRENILFGCQL---EE----PYYRSVIQACALLP--------DL-EILPS---- 115 (237)
T ss_dssp ----CEEEECSSCCC-CSE------EHHHHHHTTSCC---CT----THHHHHHHHTTCHH--------HH-TTSTT----
T ss_pred ----EEEEEcCCCcC-CCc------CHHHHhhCcccc---CH----HHHHHHHHHHhhHH--------HH-Hhccc----
Confidence 27999999764 578 999999886311 11 11122233222210 00 00000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
| ... ..++.+..+|+|++|++.|++
T Consensus 116 ---------------------------------------------~---------~~~-~~~~~~~~LSgGqkqRv~lAr 140 (237)
T 2cbz_A 116 ---------------------------------------------G---------DRT-EIGEKGVNLSGGQKQRVSLAR 140 (237)
T ss_dssp ---------------------------------------------G---------GGS-EESTTSBCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------c---------ccc-cccCCCCCCCHHHHHHHHHHH
Confidence 0 000 112346679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh--hcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND--ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~--e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..+.. .+.+.+.+ ....++++++.+|+++... ...++.++
T Consensus 141 aL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~~~~~~~tviivtH~~~~~~--~~d~v~~l 201 (237)
T 2cbz_A 141 AVYS------NADIYLFDDPLSAVDAHVGK-----------HIFENVIGPKGMLKNKTRILVTHSMSYLP--QVDVIIVM 201 (237)
T ss_dssp HHHH------CCSEEEEESTTTTSCHHHHH-----------HHHHHTTSTTSTTTTSEEEEECSCSTTGG--GSSEEEEE
T ss_pred HHhc------CCCEEEEeCcccccCHHHHH-----------HHHHHHHHHHhhcCCCEEEEEecChHHHH--hCCEEEEE
Confidence 9998 99999999998886655443 45555531 1123788999999987643 46677666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 202 ~ 202 (237)
T 2cbz_A 202 S 202 (237)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-21 Score=215.32 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=142.1
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+++|++++|+ ++++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +....
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~---i~g~~----i~~~~ 411 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE---VDELD----VRTVK 411 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE---ESSSB----GGGBC
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE---ECCEE----cccCC
Confidence 35799999999995 467999999999 9999999999999999944 57789999 88883 33333
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.++||+|++.++ .. |++||+.++.... . .+.+..+++..++...
T Consensus 412 ~~~~r~~i~~v~Q~~~lf-~~------tv~eni~~~~~~~--~----~~~~~~~~~~~~~~~~----------------- 461 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLF-SG------TIKENLKWGREDA--T----DDEIVEAAKIAQIHDF----------------- 461 (587)
T ss_dssp HHHHHHHEEEECSSCCCC-SE------EHHHHHTTTCSSC--C----HHHHHHHHHHTTCHHH-----------------
T ss_pred HHHHHhheEEECCCCcCc-Cc------cHHHHHhccCCCC--C----HHHHHHHHHHhCcHHH-----------------
Confidence 334566799999999887 35 8999999873211 1 1223334444444221
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc-ccccCCCCCCCCCCCCCCcceE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~-~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+..|- +-+....+....+|+||+|+++
T Consensus 462 ----------------------------------------------------i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 462 ----------------------------------------------------IISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp ----------------------------------------------------HHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred ----------------------------------------------------HHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 11100 0000112235579999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.+-+..+.. .+.+.+.+. ..++|+++.+|+++... ...++.+
T Consensus 490 lARal~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~-~~~~tvi~itH~l~~~~--~~d~i~v 549 (587)
T 3qf4_A 490 IARALVK------KPKVLILDDCTSSVDPITEK-----------RILDGLKRY-TKGCTTFIITQKIPTAL--LADKILV 549 (587)
T ss_dssp HHHHHHT------CCSEEEEESCCTTSCHHHHH-----------HHHHHHHHH-STTCEEEEEESCHHHHT--TSSEEEE
T ss_pred HHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHh-CCCCEEEEEecChHHHH--hCCEEEE
Confidence 9999998 99999999998776554443 455555554 34789999999987543 5677777
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 550 l~ 551 (587)
T 3qf4_A 550 LH 551 (587)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-21 Score=214.25 Aligned_cols=203 Identities=15% Similarity=0.151 Sum_probs=141.9
Q ss_pred CCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+++|++++|++ +++|+|+||+| ||+||||||||||+++|++ .|.+|+|. ++|.+ +....
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---~~g~~----~~~~~ 409 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL---IDGHN----IKDFL 409 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE---ETTEE----GGGSC
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE---ECCEE----hhhCC
Confidence 356999999999964 57999999999 9999999999999999954 57789999 88883 33333
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.+|||+|++.+++ . |++||+.++.... ..+.+.++++.+++....+. .-.|++.
T Consensus 410 ~~~~r~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~----lp~g~~t--- 469 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILFS-D------TVKENILLGRPTA------TDEEVVEAAKMANAHDFIMN----LPQGYDT--- 469 (578)
T ss_dssp HHHHHHTEEEECSSCCCCS-S------BHHHHHGGGCSSC------CHHHHHHHHHHTTCHHHHHT----STTGGGC---
T ss_pred HHHHhhheEEEeCCCccCc-c------cHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHHh----Ccchhhh---
Confidence 3345567999999988874 4 8999999873111 11234455555555321100 0001100
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
........+|+|++|+++|
T Consensus 470 -------------------------------------------------------------~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 470 -------------------------------------------------------------EVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp -------------------------------------------------------------BCCGGGTTSCHHHHHHHHH
T ss_pred -------------------------------------------------------------hhccCCCcCCHHHHHHHHH
Confidence 0112234689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.+-+..+.. .+.+.+.+.. .++|+++.+|+++... ...++.++
T Consensus 489 Aral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~-~~~t~i~itH~l~~~~--~~d~i~~l 548 (578)
T 4a82_A 489 ARIFLN------NPPILILDEATSALDLESES-----------IIQEALDVLS-KDRTTLIVAHRLSTIT--HADKIVVI 548 (578)
T ss_dssp HHHHHH------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHT-TTSEEEEECSSGGGTT--TCSEEEEE
T ss_pred HHHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecCHHHHH--cCCEEEEE
Confidence 999998 99999999998776654442 4455555443 3688999999987643 36777766
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 549 ~ 549 (578)
T 4a82_A 549 E 549 (578)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-21 Score=215.00 Aligned_cols=203 Identities=18% Similarity=0.195 Sum_probs=139.9
Q ss_pred CCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.|+++||+++|++ +++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +.....
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---~~g~~----i~~~~~ 424 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL---VDGID----IRKIKR 424 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE---ETTEE----GGGSCH
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE---ECCEE----hhhCCH
Confidence 356999999999974 57999999999 9999999999999999944 57789999 88883 333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+++ . |++||+.++... .. .+.+.++++.+++....+. .-.|++.
T Consensus 425 ~~~r~~i~~v~Q~~~lf~-~------tv~eni~~~~~~--~~----~~~~~~~~~~~~~~~~~~~----~~~g~~t---- 483 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFS-T------TVKENLKYGNPG--AT----DEEIKEAAKLTHSDHFIKH----LPEGYET---- 483 (598)
T ss_dssp HHHHHHEEEECTTCCCCS-S------BHHHHHHSSSTT--CC----TTHHHHHTTTTTCHHHHHT----STTGGGC----
T ss_pred HHHHhceEEEeCCCcccc-c------cHHHHHhcCCCC--CC----HHHHHHHHHHhCCHHHHHh----ccccccc----
Confidence 345668999999998873 5 899999987311 11 1223333333333211000 0000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+| .....+|+|++|+++|+
T Consensus 484 ---------------------------------------~~~---------------------~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 484 ---------------------------------------VLT---------------------DNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp ---------------------------------------BCH---------------------HHHTTSCHHHHHHHHHH
T ss_pred ---------------------------------------hhc---------------------CCCCCCCHHHHHHHHHH
Confidence 000 11235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..+.. .+.+.+.+.. .++|+++.+|+++... ...++.+++
T Consensus 504 ral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~-~~~t~i~itH~l~~~~--~~d~i~~l~ 563 (598)
T 3qf4_B 504 RAFLA------NPKILILDEATSNVDTKTEK-----------SIQAAMWKLM-EGKTSIIIAHRLNTIK--NADLIIVLR 563 (598)
T ss_dssp HHHHT------CCSEEEECCCCTTCCHHHHH-----------HHHHHHHHHH-TTSEEEEESCCTTHHH--HCSEEEEEC
T ss_pred HHHhc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecCHHHHH--cCCEEEEEE
Confidence 99998 99999999998876654443 4455555543 4789999999988653 367777765
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=182.62 Aligned_cols=184 Identities=14% Similarity=0.143 Sum_probs=115.2
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++||++.+ +.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g-------------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSG-------------- 99 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE---CCS--------------
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECC--------------
Confidence 458899998853 67999999999 99999999999999999654 5567777 554
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++||+|+..+++ . ||+||+. +. .. .. ..+..++..+++...
T Consensus 100 ---~i~~v~Q~~~l~~-~------tv~enl~-~~-~~--~~----~~~~~~~~~~~l~~~-------------------- 141 (290)
T 2bbs_A 100 ---RISFCSQNSWIMP-G------TIKENII-GV-SY--DE----YRYRSVIKACQLEED-------------------- 141 (290)
T ss_dssp ---CEEEECSSCCCCS-S------BHHHHHH-TT-CC--CH----HHHHHHHHHTTCHHH--------------------
T ss_pred ---EEEEEeCCCccCc-c------cHHHHhh-Cc-cc--ch----HHHHHHHHHhChHHH--------------------
Confidence 3799999988765 6 8999987 42 11 11 112223333333210
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc-ccCCCCCCCCCCCCCCcceEEee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~-~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++.+... .......+..+|+|++|++.|++
T Consensus 142 -------------------------------------------------l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 142 -------------------------------------------------ISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp -------------------------------------------------HHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred -------------------------------------------------HHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 0000000 00112235679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh-hhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF-NDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l-~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..... .+.+++ .+. ..++++++.+|+++... .+.++.++.
T Consensus 173 aL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~ll~~~-~~~~tviivtHd~~~~~--~~d~i~~l~ 232 (290)
T 2bbs_A 173 AVYK------DADLYLLDSPFGYLDVLTEK-----------EIFESCVCKL-MANKTRILVTSKMEHLK--KADKILILH 232 (290)
T ss_dssp HHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHCCCCC-TTTSEEEEECCCHHHHH--HSSEEEEEE
T ss_pred HHHC------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHh-hCCCEEEEEecCHHHHH--cCCEEEEEE
Confidence 9998 99999999998876655443 454543 233 24789999999987543 366666664
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-19 Score=216.02 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=145.0
Q ss_pred CCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|+|+||+++|+++ ++|+||||+| ||+||||||||||+++| +..|.+|+|. ++|. ++...
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~---iDG~----di~~i 1146 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF---IDGS----EIKTL 1146 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE---ETTE----ETTTB
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE---ECCE----EhhhC
Confidence 4579999999999643 6999999999 99999999999999999 5567889999 8888 44444
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++++++|+|++.||. | |++||+.|+.-+...+ .+.+.++++..|+.+.- ..+ +
T Consensus 1147 ~~~~lR~~i~~V~Qdp~LF~---g----TIreNI~~gld~~~~s----d~ei~~Al~~a~l~~~I--------~~L--p- 1204 (1321)
T 4f4c_A 1147 NPEHTRSQIAIVSQEPTLFD---C----SIAENIIYGLDPSSVT----MAQVEEAARLANIHNFI--------AEL--P- 1204 (1321)
T ss_dssp CHHHHHTTEEEECSSCCCCS---E----EHHHHHSSSSCTTTSC----HHHHHHHHHHTTCHHHH--------HTS--T-
T ss_pred CHHHHHhheEEECCCCEeeC---c----cHHHHHhccCCCCCCC----HHHHHHHHHHhCChHHH--------HcC--c-
Confidence 45566778999999999984 3 8999999984332222 33466677777764321 111 0
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+|++- .+|+.| ..+|+||+|+++
T Consensus 1205 ---------------------------------~GldT---~vge~G---------------------~~LSgGQrQria 1227 (1321)
T 4f4c_A 1205 ---------------------------------EGFET---RVGDRG---------------------TQLSGGQKQRIA 1227 (1321)
T ss_dssp ---------------------------------TTTCS---EETTTS---------------------CSSCHHHHHHHH
T ss_pred ---------------------------------CCCCC---EecCCC---------------------cccCHHHHHHHH
Confidence 11110 123333 358999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+|+++. +++++|+|||+..-+..++. .+.+.|++. ..++|+++..|.+.- ..-..++.|
T Consensus 1228 iARAllr------~~~ILiLDEaTSaLD~~tE~-----------~Iq~~l~~~-~~~~TvI~IAHRLsT--i~~aD~I~V 1287 (1321)
T 4f4c_A 1228 IARALVR------NPKILLLDEATSALDTESEK-----------VVQEALDRA-REGRTCIVIAHRLNT--VMNADCIAV 1287 (1321)
T ss_dssp HHHHHHS------CCSEEEEESCCCSTTSHHHH-----------HHHHHHTTT-SSSSEEEEECSSSST--TTTCSEEEE
T ss_pred HHHHHHh------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHH-cCCCEEEEeccCHHH--HHhCCEEEE
Confidence 9999998 99999999997764443332 333334332 347899988887543 234566666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 1288 ld 1289 (1321)
T 4f4c_A 1288 VS 1289 (1321)
T ss_dssp ES
T ss_pred EE
Confidence 64
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-19 Score=213.46 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=139.9
Q ss_pred CCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|+++||+++|++ .++|+||||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +...
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~---i~g~~----i~~~ 457 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS---IDGQD----IRTI 457 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE---ETTEE----GGGS
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEE----HHhC
Confidence 457999999999975 36999999999 9999999999999999944 57789999 88883 3333
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.+|||+|++.+++ . |++||+.++.... . .+.+..++...++... +...-.|++.
T Consensus 458 ~~~~~r~~i~~v~Q~~~l~~-~------ti~eNi~~g~~~~--~----~~~~~~~~~~~~~~~~----i~~l~~g~~t-- 518 (1284)
T 3g5u_A 458 NVRYLREIIGVVSQEPVLFA-T------TIAENIRYGREDV--T----MDEIEKAVKEANAYDF----IMKLPHQFDT-- 518 (1284)
T ss_dssp CHHHHHHHEEEECSSCCCCS-S------CHHHHHHHHCSSC--C----HHHHHHHHHHTTCHHH----HHHSTTGGGC--
T ss_pred CHHHHHhheEEEcCCCccCC-c------cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHH----HHhccccccc--
Confidence 33445567999999998874 4 8999999983211 1 1223344444443221 0000000000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
........+|+||+|+++
T Consensus 519 --------------------------------------------------------------~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 519 --------------------------------------------------------------LVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp --------------------------------------------------------------CCSSSSCSSCHHHHHHHH
T ss_pred --------------------------------------------------------------cccCCCCccCHHHHHHHH
Confidence 111234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.+-+..... .+.+.+... ..++|+++.+|++..... ..++.+
T Consensus 537 iARal~~------~p~iliLDEpts~LD~~~~~-----------~i~~~l~~~-~~~~t~i~itH~l~~i~~--~d~i~v 596 (1284)
T 3g5u_A 537 IARALVR------NPKILLLDEATSALDTESEA-----------VVQAALDKA-REGRTTIVIAHRLSTVRN--ADVIAG 596 (1284)
T ss_dssp HHHHHHH------CCSEEEEESTTCSSCHHHHH-----------HHHHHHHHH-HTTSEEEEECSCHHHHTT--CSEEEE
T ss_pred HHHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHH-cCCCEEEEEecCHHHHHc--CCEEEE
Confidence 9999998 99999999997765543332 344444433 348899999998875532 567776
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 597 l~ 598 (1284)
T 3g5u_A 597 FD 598 (1284)
T ss_dssp CS
T ss_pred EE
Confidence 64
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-19 Score=211.76 Aligned_cols=204 Identities=17% Similarity=0.232 Sum_probs=142.4
Q ss_pred CCCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccc
Q psy91 76 DRDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..+.|+|+|++++|++ +++|+|+||+| ||+||||||||||+++|+ ..+..|+|. ++|. ++..
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~---idG~----~i~~ 484 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGV----DVRD 484 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE---ETTE----ETTT
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCccc---CCCc----cchh
Confidence 3457999999999964 57999999999 999999999999999994 467889999 8888 4444
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......+..+|||+|++.||.. |++||+.|++-. . ..+.+.++++..++... +..+ +
T Consensus 485 ~~~~~lr~~i~~v~Q~~~Lf~~-------TI~eNI~~g~~~--~----~~~~v~~a~~~a~l~~~--------i~~l--p 541 (1321)
T 4f4c_A 485 INLEFLRKNVAVVSQEPALFNC-------TIEENISLGKEG--I----TREEMVAACKMANAEKF--------IKTL--P 541 (1321)
T ss_dssp SCHHHHHHHEEEECSSCCCCSE-------EHHHHHHTTCTT--C----CHHHHHHHHHHTTCHHH--------HHHS--T
T ss_pred ccHHHHhhcccccCCcceeeCC-------chhHHHhhhccc--c----hHHHHHHHHHHccchhH--------HHcC--C
Confidence 4445566789999999999842 899999998311 1 22345566666665431 1111 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ |.+ -.+|+.| ..+||||+||+
T Consensus 542 ~----------------------------------G~~---T~vGe~G---------------------~~LSGGQkQRi 563 (1321)
T 4f4c_A 542 N----------------------------------GYN---TLVGDRG---------------------TQLSGGQKQRI 563 (1321)
T ss_dssp T----------------------------------TTS---SEESSSS---------------------CCCCHHHHHHH
T ss_pred C----------------------------------CCc---cEecCCC---------------------CCCCHHHHHHH
Confidence 0 000 0134433 35899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+|+|+.+. +++++|+|||...-+..++. .+.+.|.+. ..+||+++.+|.+... +...++.
T Consensus 564 aiARAl~~------~~~IliLDE~tSaLD~~te~-----------~i~~~l~~~-~~~~T~iiiaHrls~i--~~aD~Ii 623 (1321)
T 4f4c_A 564 AIARALVR------NPKILLLDEATSALDAESEG-----------IVQQALDKA-AKGRTTIIIAHRLSTI--RNADLII 623 (1321)
T ss_dssp HHHHHHTT------CCSEEEEESTTTTSCTTTHH-----------HHHHHHHHH-HTTSEEEEECSCTTTT--TTCSEEE
T ss_pred HHHHHHcc------CCCEEEEecccccCCHHHHH-----------HHHHHHHHH-hCCCEEEEEcccHHHH--HhCCEEE
Confidence 99999999 99999999996655444443 333333322 2488999999886643 3445565
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
+++
T Consensus 624 vl~ 626 (1321)
T 4f4c_A 624 SCK 626 (1321)
T ss_dssp EEE
T ss_pred Eee
Confidence 554
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-19 Score=211.69 Aligned_cols=205 Identities=17% Similarity=0.200 Sum_probs=143.2
Q ss_pred CCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|.++||+++|+++ ++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +...
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~---i~g~~----i~~~ 1100 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF---LDGKE----IKQL 1100 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE---SSSSC----TTSS
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCEE----cccC
Confidence 4579999999999753 6999999999 9999999999999999954 67789999 88883 3333
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
..+..++.++||+|++.++ .. |++||+.++........ +.+..+++..++.....+. -.|++.
T Consensus 1101 ~~~~~r~~i~~v~Q~~~l~-~~------ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l----~~gldt-- 1163 (1284)
T 3g5u_A 1101 NVQWLRAQLGIVSQEPILF-DC------SIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSL----PDKYNT-- 1163 (1284)
T ss_dssp CHHHHTTSCEEEESSCCCC-SS------BHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSST----TTGGGC--
T ss_pred CHHHHHhceEEECCCCccc-cc------cHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhC----cccccc--
Confidence 3344566899999999776 35 99999998743222222 2233444444443211100 000000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
.+| .....+|||++|+++
T Consensus 1164 -----------------------------------------~vg---------------------e~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1164 -----------------------------------------RVG---------------------DKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp -----------------------------------------BCS---------------------TTSCSSCHHHHHHHH
T ss_pred -----------------------------------------ccC---------------------CCCCccCHHHHHHHH
Confidence 011 123468999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.|-+..... .+.+.+.+. ..++|+++.+|+++... .+.++.+
T Consensus 1182 iARal~~------~p~iLiLDEpTs~lD~~~~~-----------~i~~~l~~~-~~~~tvi~isH~l~~i~--~~dri~v 1241 (1284)
T 3g5u_A 1182 IARALVR------QPHILLLDEATSALDTESEK-----------VVQEALDKA-REGRTCIVIAHRLSTIQ--NADLIVV 1241 (1284)
T ss_dssp HHHHHHH------CCSSEEEESCSSSCCHHHHH-----------HHHHHHHHH-SSSSCEEEECSCTTGGG--SCSEEEE
T ss_pred HHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHh-CCCCEEEEEecCHHHHH--cCCEEEE
Confidence 9999998 99999999998887655543 444555443 34889999999987543 3677777
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 1242 l~ 1243 (1284)
T 3g5u_A 1242 IQ 1243 (1284)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-18 Score=186.85 Aligned_cols=182 Identities=14% Similarity=0.070 Sum_probs=132.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.++++++.|++. .|++++|+| ||+|||||||||||++|+|. +..|+|. +
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~---------------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE---W---------------- 415 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC---C----------------
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---E----------------
Confidence 468999999999864 689999888 99999999999999999664 4556555 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
...+|||+|+..+.+.+ ||.+++.+... ......+.+..+++.+|+.+
T Consensus 416 -~~~i~~v~Q~~~~~~~~------tv~e~~~~~~~----~~~~~~~~~~~~l~~~~l~~--------------------- 463 (607)
T 3bk7_A 416 -DLTVAYKPQYIKAEYEG------TVYELLSKIDS----SKLNSNFYKTELLKPLGIID--------------------- 463 (607)
T ss_dssp -CCCEEEECSSCCCCCSS------BHHHHHHHHHH----HHHHCHHHHHHTHHHHTCTT---------------------
T ss_pred -eeEEEEEecCccCCCCC------cHHHHHHhhhc----cCCCHHHHHHHHHHHcCCch---------------------
Confidence 13589999998777777 89877654200 00011223444555555432
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|++.|+++
T Consensus 464 ----------------------------------------------------------~~~~~~~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 464 ----------------------------------------------------------LYDRNVEDLSGGELQRVAIAAT 485 (607)
T ss_dssp ----------------------------------------------------------TTTSBGGGCCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HhcCChhhCCHHHHHHHHHHHH
Confidence 2344566799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++++|+|||+.|.+..... .+.+.|.+.. +.+.++++.+|+++... .+..++.++.
T Consensus 486 L~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vsHd~~~~~-~~adrv~vl~ 546 (607)
T 3bk7_A 486 LLR------DADIYLLDEPSAYLDVEQRL-----------AVSRAIRHLMEKNEKTALVVEHDVLMID-YVSDRLIVFE 546 (607)
T ss_dssp HTS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHh------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEc
Confidence 988 99999999998887765553 5666666654 34789999999977543 4667777775
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-18 Score=185.02 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=127.8
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
...+.++++++.|++. .|..++++| ||+|||||||||||++|+| .+.+|+|. +.|.
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~~~------------ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT---PEKQ------------ 330 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE---SSCC------------
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCe------------
Confidence 3468899999999874 577778887 9999999999999999965 46677776 4332
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++|++|+....+.. ||.+|+.+..... .. .....+..++
T Consensus 331 ----~i~~~~q~~~~~~~~------tv~~~l~~~~~~~-~~--~~~~~~~~~l--------------------------- 370 (538)
T 3ozx_A 331 ----ILSYKPQRIFPNYDG------TVQQYLENASKDA-LS--TSSWFFEEVT--------------------------- 370 (538)
T ss_dssp ----CEEEECSSCCCCCSS------BHHHHHHHHCSST-TC--TTSHHHHHTT---------------------------
T ss_pred ----eeEeechhcccccCC------CHHHHHHHhhhhc-cc--hhHHHHHHHH---------------------------
Confidence 478999986655556 7877765431000 00 0000111111
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+.+.+ +.++.+..+|+|++|++.|++
T Consensus 371 ---------------------------------------------------~~~~l~~-~~~~~~~~LSGGq~QRv~iAr 398 (538)
T 3ozx_A 371 ---------------------------------------------------KRLNLHR-LLESNVNDLSGGELQKLYIAA 398 (538)
T ss_dssp ---------------------------------------------------TTTTGGG-CTTSBGGGCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHcCCHH-HhcCChhhCCHHHHHHHHHHH
Confidence 1111222 345567789999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.|.+..... .+.+.|.+..+ .+.++++.+|+++... .++.++.++.
T Consensus 399 aL~~------~p~lLlLDEPT~gLD~~~~~-----------~i~~~l~~l~~~~g~tvi~vsHdl~~~~-~~aDri~vl~ 460 (538)
T 3ozx_A 399 TLAK------EADLYVLDQPSSYLDVEERY-----------IVAKAIKRVTRERKAVTFIIDHDLSIHD-YIADRIIVFK 460 (538)
T ss_dssp HHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEe
Confidence 9998 99999999998887765543 56666666654 4788899999987543 4677777774
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-18 Score=183.95 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=127.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.++++++.|++. .|++++|+| ||+|||||||||||++|+|. +..|+|. +
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~---~---------------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE---W---------------- 345 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC---C----------------
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---E----------------
Confidence 468999999999764 689999888 99999999999999999664 4555554 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
...+|||+|+..+.+.+ ||.+++..... ... ...+.+..+++.+|+
T Consensus 346 -~~~i~~v~Q~~~~~~~~------tv~~~~~~~~~-~~~---~~~~~~~~~l~~~~l----------------------- 391 (538)
T 1yqt_A 346 -DLTVAYKPQYIKADYEG------TVYELLSKIDA-SKL---NSNFYKTELLKPLGI----------------------- 391 (538)
T ss_dssp -CCCEEEECSSCCCCCSS------BHHHHHHHHHH-HHH---TCHHHHHHTTTTTTC-----------------------
T ss_pred -CceEEEEecCCcCCCCC------cHHHHHHhhhc-cCC---CHHHHHHHHHHHcCC-----------------------
Confidence 12589999998777777 88776543200 000 001112222222221
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+ ..++.+..+|+|++|++.|+++
T Consensus 392 -------------------------------------------------------~~-~~~~~~~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 392 -------------------------------------------------------ID-LYDREVNELSGGELQRVAIAAT 415 (538)
T ss_dssp -------------------------------------------------------GG-GTTSBGGGCCHHHHHHHHHHHH
T ss_pred -------------------------------------------------------hh-hhcCChhhCCHHHHHHHHHHHH
Confidence 11 2345567799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++++|+|||+.|-+..... .+.+.|.+.. +.+.++++.+|+++... .++.++.++.
T Consensus 416 L~~------~p~lLlLDEPt~~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vsHd~~~~~-~~~drv~vl~ 476 (538)
T 1yqt_A 416 LLR------DADIYLLDEPSAYLDVEQRL-----------AVSRAIRHLMEKNEKTALVVEHDVLMID-YVSDRLMVFE 476 (538)
T ss_dssp HTS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEe
Confidence 988 99999999998887766553 5666666654 34789999999977543 4667777774
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-18 Score=187.02 Aligned_cols=193 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred eccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeec------ccCCccceeccccccc
Q psy91 83 ATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVP------NVNGSNTVIEVAGTKV 147 (541)
Q Consensus 83 ~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~------~~~G~~~~~~~~~~~~ 147 (541)
+||+++|++. .+|+++| +| ||+|||||||||||++|+| .++.|++... .+.|..+... ....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~--~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY--FERL 171 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHH--HHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhh--hhhh
Confidence 8999999877 4999999 76 9999999999999999965 4667875100 0445422100 0000
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
......+++++|...+.+.+ ...||.+++... +..+++.++++.+|+.+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~---~~~tv~e~l~~~---------~~~~~~~~~L~~lgL~~------------------- 220 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKA---VKGKVRELLKKV---------DEVGKFEEVVKELELEN------------------- 220 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGT---CCSBHHHHHHHT---------CCSSCHHHHHHHTTCTT-------------------
T ss_pred hhhhcceEEeechhhhchhh---ccccHHHHhhhh---------HHHHHHHHHHHHcCCCc-------------------
Confidence 11223567888875544432 111455544321 11233455555555533
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 221 ------------------------------------------------------------~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 221 ------------------------------------------------------------VLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp ------------------------------------------------------------GGGSBGGGCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhCCChhhCCHHHHHHHHHH
Confidence 22344567899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.|.+..... ++.++|.+..+.+.++++.+|++++. ..+..++.++.
T Consensus 241 raL~~------~P~lLlLDEPTs~LD~~~~~-----------~l~~~L~~l~~~g~tvIivsHdl~~~-~~~adri~vl~ 302 (607)
T 3bk7_A 241 AALLR------KAHFYFFDEPSSYLDIRQRL-----------KVARVIRRLANEGKAVLVVEHDLAVL-DYLSDVIHVVY 302 (607)
T ss_dssp HHHHS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHH-HHHCSEEEEEE
T ss_pred HHHhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEecChHHH-HhhCCEEEEEC
Confidence 99998 99999999998876655443 56666666655588999999998754 34666776664
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-18 Score=184.13 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=124.1
Q ss_pred eccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeec------ccCCccceeccccccc
Q psy91 83 ATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVP------NVNGSNTVIEVAGTKV 147 (541)
Q Consensus 83 ~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~------~~~G~~~~~~~~~~~~ 147 (541)
+||+++|+++ .+|+++| +| ||+|||||||||||++|+| .++.|++... .+.|..+... ....
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~--~~~~ 101 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY--FEKL 101 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH--HHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH--HHHH
Confidence 4789999876 4899999 76 9999999999999999965 4667775100 0445422100 0001
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
......+++++|...+++.+ ...++.+++.. .+..+++.++++.+|+..
T Consensus 102 ~~~~~~~~~~~q~~~~~~~~---~~~~v~e~~~~---------~~~~~~~~~~l~~lgl~~------------------- 150 (538)
T 1yqt_A 102 KNGEIRPVVKPQYVDLIPKA---VKGKVIELLKK---------ADETGKLEEVVKALELEN------------------- 150 (538)
T ss_dssp HTTSCCCEEECSCGGGSGGG---CCSBHHHHHHH---------HCSSSCHHHHHHHTTCTT-------------------
T ss_pred HHHhhhhhhhhhhhhhcchh---hhccHHHHHhh---------hhHHHHHHHHHHHcCCCh-------------------
Confidence 11223578888876554432 01133333211 111223444455444432
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 151 ------------------------------------------------------------~~~~~~~~LSgGekQRv~iA 170 (538)
T 1yqt_A 151 ------------------------------------------------------------VLEREIQHLSGGELQRVAIA 170 (538)
T ss_dssp ------------------------------------------------------------TTTSBGGGCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 23445667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||+.+.+..... ++.++|.+..+.+.++++.+|+++.. ..++.++.++.
T Consensus 171 raL~~------~P~lLlLDEPTs~LD~~~~~-----------~l~~~L~~l~~~g~tvi~vsHd~~~~-~~~~dri~vl~ 232 (538)
T 1yqt_A 171 AALLR------NATFYFFDEPSSYLDIRQRL-----------NAARAIRRLSEEGKSVLVVEHDLAVL-DYLSDIIHVVY 232 (538)
T ss_dssp HHHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHH-HHHCSEEEEEE
T ss_pred HHHhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEc
Confidence 99998 99999999998876655443 56666666655688999999998744 34666776663
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-17 Score=184.34 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=128.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
.+...|+++.|+++.+|+++||+| +|+|||||||||||++|++ |.| .|. ... . ..
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G~i-----~g~----~~~-----~-~~ 495 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----GQV-----DGF----PTQ-----E-EC 495 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----TCS-----TTC----CCT-----T-TS
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----CCc-----CCC----ccc-----c-ce
Confidence 566679999999999999999999 9999999999999999974 433 233 110 0 12
Q ss_pred cEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 153 PWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 153 ~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
.++|++|+. .+++.+ |+.+++.+. .. +. .+++..+++.+|+..
T Consensus 496 ~~~~v~q~~~~~~~~l------tv~e~l~~~-~~-~~-----~~~v~~~L~~lgL~~----------------------- 539 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDT------SVLDFVFES-GV-GT-----KEAIKDKLIEFGFTD----------------------- 539 (986)
T ss_dssp CEEETTCCCCCCCTTS------BHHHHHHTT-CS-SC-----HHHHHHHHHHTTCCH-----------------------
T ss_pred eEEEEcccccccccCC------cHHHHHHHh-hc-CH-----HHHHHHHHHHcCCCh-----------------------
Confidence 368888874 677788 999988652 11 11 345666677776631
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+.++.+..+|+|++|++.|+++++
T Consensus 540 -------------------------------------------------------~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 540 -------------------------------------------------------EMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp -------------------------------------------------------HHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 0112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||+.|.+..+.. .+.++|.+ .+.++++.+|+++... .+..++.++.
T Consensus 565 ~------~P~lLLLDEPTs~LD~~~~~-----------~l~~~L~~---~g~tvIivSHdl~~l~-~~adrii~L~ 619 (986)
T 2iw3_A 565 R------NADILLLDEPTNHLDTVNVA-----------WLVNYLNT---CGITSITISHDSVFLD-NVCEYIINYE 619 (986)
T ss_dssp T------TCSEEEEESTTTTCCHHHHH-----------HHHHHHHH---SCSEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred c------CCCEEEEECCccCCCHHHHH-----------HHHHHHHh---CCCEEEEEECCHHHHH-HhCCEEEEEE
Confidence 8 99999999998887665543 56666665 4789999999977543 3556666654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-17 Score=185.95 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=46.9
Q ss_pred CCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 77 RDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
.+.+.++|++++|++ +++|+++||+| ||+|||||||||||++|+| .+.+|+|+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 346999999999975 67999999999 9999999999999999955 46788888
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-16 Score=172.58 Aligned_cols=180 Identities=14% Similarity=0.052 Sum_probs=121.3
Q ss_pred ecccccccc-cceeecceEEE-----------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccc
Q psy91 83 ATLPEQVHR-KSVKKGFDFTL-----------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 83 ~~l~~~~~~-~~iL~~isl~i-----------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.++++.|++ ..++++++|++ ||+|||||||||||++|+|...+ ..|+. . .
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-------~~G~~----~-------~ 411 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-------DEGQD----I-------P 411 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-------SBCCC----C-------C
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-------CCCcC----c-------c
Confidence 567788865 35789999887 79999999999999999765443 34541 1 1
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
...++|++|+....... ||.+++... ...... ....+..+++.+|+
T Consensus 412 ~~~i~~~~q~~~~~~~~------tv~e~~~~~-~~~~~~---~~~~~~~~l~~l~l------------------------ 457 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPG------TVRQLFFKK-IRGQFL---NPQFQTDVVKPLRI------------------------ 457 (608)
T ss_dssp SCCEEEECSSCCCCCCS------BHHHHHHHH-CSSTTT---SHHHHHHTHHHHTS------------------------
T ss_pred CCcEEEecccccccCCc------cHHHHHHHH-hhcccc---cHHHHHHHHHHcCC------------------------
Confidence 23589999986655555 777655321 100000 01122223333333
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+ +.++.+..+|+|++|++.|++++
T Consensus 458 ------------------------------------------------------~~-~~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 458 ------------------------------------------------------DD-IIDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp ------------------------------------------------------TT-TSSSBSSSCCHHHHHHHHHHHHT
T ss_pred ------------------------------------------------------hh-hhcCChhhCCHHHHHHHHHHHHH
Confidence 22 34556778999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||+.|.+..... .+.+.+.+.. +.+.++++.+|+++... .++.++.++.
T Consensus 483 ~~------~p~lLlLDEPT~gLD~~~~~-----------~i~~ll~~l~~~~g~tviivtHdl~~~~-~~aDrvivl~ 542 (608)
T 3j16_B 483 GI------PADIYLIDEPSAYLDSEQRI-----------ICSKVIRRFILHNKKTAFIVEHDFIMAT-YLADKVIVFE 542 (608)
T ss_dssp TS------CCSEEEECCTTTTCCHHHHH-----------HHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEECE
T ss_pred Hh------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEe
Confidence 88 99999999998887665543 5556666654 35889999999987544 4667777664
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-16 Score=174.53 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=67.6
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee--EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR--LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~--L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+.+...++.+..+|+|++|++.|+++++. +|+ ++|+|||+.|.+..... .+.++|.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~------~p~~~lLlLDEPtsgLD~~~~~-----------~l~~~l~ 248 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS------RLTGVLYVLDEPSIGLHQRDND-----------RLIATLK 248 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT------CCCSCEEEEECTTTTCCGGGHH-----------HHHHHHH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh------CCCCCEEEEECCccCCCHHHHH-----------HHHHHHH
Confidence 4444444434566788899999999999999987 777 99999998887765553 6666777
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+..+.+.++++++|++++.. ...++.++
T Consensus 249 ~l~~~g~tvi~vtHd~~~~~--~~d~ii~l 276 (670)
T 3ux8_A 249 SMRDLGNTLIVVEHDEDTML--AADYLIDI 276 (670)
T ss_dssp HHHHTTCEEEEECCCHHHHH--HCSEEEEE
T ss_pred HHHHcCCEEEEEeCCHHHHh--hCCEEEEe
Confidence 76666889999999988543 36677766
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-15 Score=164.12 Aligned_cols=82 Identities=7% Similarity=0.034 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee
Q psy91 288 YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI 367 (541)
Q Consensus 288 ~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i 367 (541)
..++.+..+|+|++|+++|+++++. +++++|+|||+.|.+..... .+.+++.+..+.+.++++
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iAraL~~------~p~llllDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIGMSCVQ------EADVYMFDEPSSYLDVKQRL-----------NAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHHHHHHS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHGGGTTTCEEEE
T ss_pred hhCCChHHCCHHHHHHHHHHHHHHh------CCCEEEEECcccCCCHHHHH-----------HHHHHHHHHHhCCCEEEE
Confidence 3455677899999999999999998 99999999998876654443 566667776666889999
Q ss_pred ccccchhhhhcccceeEEEc
Q psy91 368 EKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 368 ~~~~~di~~~~l~~rvnvIp 387 (541)
.+|+++... .+..++.++.
T Consensus 277 vtHdl~~~~-~~~drv~vl~ 295 (608)
T 3j16_B 277 VEHDLSVLD-YLSDFVCIIY 295 (608)
T ss_dssp ECSCHHHHH-HHCSEEEEEE
T ss_pred EeCCHHHHH-HhCCEEEEEe
Confidence 999987554 4667777763
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-14 Score=156.44 Aligned_cols=80 Identities=4% Similarity=0.039 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeec
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~ 368 (541)
.++.+..+|+|++|++.|+++++. +++++|+|||+.+.+..... .+.+++.+..+ +.++++.
T Consensus 132 ~~~~~~~LSgGe~Qrv~iA~aL~~------~p~illlDEPts~LD~~~~~-----------~l~~~l~~l~~-g~tii~v 193 (538)
T 3ozx_A 132 WNKDANILSGGGLQRLLVAASLLR------EADVYIFDQPSSYLDVRERM-----------NMAKAIRELLK-NKYVIVV 193 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHCT-TSEEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHhC-CCEEEEE
Confidence 345566799999999999999998 99999999998876655443 55566666655 8899999
Q ss_pred cccchhhhhcccceeEEEc
Q psy91 369 KKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 369 ~~~~di~~~~l~~rvnvIp 387 (541)
+|+++... .++.++.++.
T Consensus 194 sHdl~~~~-~~~d~i~vl~ 211 (538)
T 3ozx_A 194 DHDLIVLD-YLTDLIHIIY 211 (538)
T ss_dssp CSCHHHHH-HHCSEEEEEE
T ss_pred EeChHHHH-hhCCEEEEec
Confidence 99987543 4666766663
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-14 Score=159.87 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=65.8
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee---eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL---RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 355 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~---~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l 355 (541)
+..+.+.....++.+..+|+|++|++.|+++++. ++ +++|+|||+.|.+..... .+.+.+
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~------~p~~p~llllDEPt~~LD~~~~~-----------~i~~~l 589 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR------RSNGRTLYILDEPTTGLHVDDIA-----------RLLDVL 589 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHS------CCCSCEEEEEESTTTTCCHHHHH-----------HHHHHH
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhh------CCCCCcEEEEeCCCCCCCHHHHH-----------HHHHHH
Confidence 3344443323456778899999999999999876 54 699999998887655543 566666
Q ss_pred hhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 356 NDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 356 ~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+..+.+.++++++|++++. ..+.++.++
T Consensus 590 ~~l~~~g~tvi~vtHd~~~~--~~~d~i~~l 618 (670)
T 3ux8_A 590 HRLVDNGDTVLVIEHNLDVI--KTADYIIDL 618 (670)
T ss_dssp HHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHHHHCCCEEEEEeCCHHHH--HhCCEEEEe
Confidence 66666688999999998864 347777777
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-14 Score=138.44 Aligned_cols=55 Identities=5% Similarity=0.035 Sum_probs=39.6
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
|++|++.|+++++. +++++|+|||..| ... .+.++|.+. +.+.+++ .+|+++..+
T Consensus 108 Gq~qrv~lAraL~~------~p~lllLDEPts~----~~~-----------~l~~~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 VEVAPLAYMRGRTL------NDAFVILDEAQNT----TPA-----------QMKMFLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp EEEEEGGGGTTCCB------CSEEEEECSGGGC----CHH-----------HHHHHHTTB-CTTCEEE-EEEC-----
T ss_pred chHHHHHHHHHHhc------CCCEEEEeCCccc----cHH-----------HHHHHHHHh-cCCCEEE-EECCHHHHh
Confidence 89999999999998 9999999999877 221 555666665 4567777 888876443
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-15 Score=162.27 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCC-C-eeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYG-D-RKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G-~-i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.+.++||++.|+ ++++++ +|+||||||||||||+|++. +..| + |+ ++|.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~---vdg~---------- 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY---INLD---------- 176 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEE---EECC----------
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEE---EcCC----------
Confidence 45689999999996 577766 99999999999999999554 4567 7 77 5552
Q ss_pred cccccccEEEEeCCCcccc---ccccccCCCcccceecc
Q psy91 147 VRGRQYPWGVVEGSTVLTP---SLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~---~lig~~~qtv~e~l~~~ 182 (541)
.++.++||+|+..+++ .+ ++.+|+ |+
T Consensus 177 ---~~~~i~~vpq~~~l~~~~~~~------tv~eni-~~ 205 (460)
T 2npi_A 177 ---PQQPIFTVPGCISATPISDIL------DAQLPT-WG 205 (460)
T ss_dssp ---TTSCSSSCSSCCEEEECCSCC------CTTCTT-CS
T ss_pred ---ccCCeeeeccchhhccccccc------chhhhh-cc
Confidence 1346789999886543 35 777777 65
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=137.06 Aligned_cols=69 Identities=36% Similarity=0.406 Sum_probs=41.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDR 176 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~ 176 (541)
+|.+||+||||||||||||+|+ ..+..|+|. +.|.. ... ...++.++|++|+..+++.+ ||.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~---~~g~~----i~~---~~~~~~i~~v~q~~~~~~~l------tv~ 65 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSW---NREEK----IPK---TVEIKAIGHVIEEGGVKMKL------TVI 65 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-------------------CCC---CCSCCEEEESCC----CCEE------EEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccc---cCCcc----cCc---ceeeeeeEEEeecCCCcCCc------eEE
Confidence 5677999999999999999994 467789998 77772 211 12345799999999999999 999
Q ss_pred cceeccc
Q psy91 177 DYIGFAT 183 (541)
Q Consensus 177 e~l~~~~ 183 (541)
+|+.|+.
T Consensus 66 d~~~~g~ 72 (270)
T 3sop_A 66 DTPGFGD 72 (270)
T ss_dssp CCCC--C
T ss_pred echhhhh
Confidence 9999873
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-13 Score=135.51 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=28.8
Q ss_pred CCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 293 VPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 293 ~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
++.+|+|++|++.++++++. +++++|+|+|..+
T Consensus 174 ~~~lS~G~~qRv~~a~al~~------~p~ilIlDep~~~ 206 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVR------HPDILILEGLNVL 206 (312)
T ss_dssp EEEEETTTTEEEEEEEEEEC------SCSEEEEECTTTT
T ss_pred cccCChhhhhhhhhHHHhcc------CCCEEEECCcccc
Confidence 45688999999999999888 8999999999555
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-12 Score=149.04 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=68.8
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+.....++.+..+|+|++|++.|+++++. +-..++|+|+|||+.|.+..... .+.+.|.+
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~---~p~~p~lLILDEPTsGLD~~~~~-----------~l~~lL~~ 893 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR---RSNGRTLYILDEPTTGLHVDDIA-----------RLLDVLHR 893 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS---CCCSCEEEEEECTTTTCCHHHHH-----------HHHHHHHH
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 45555555434566788899999999999999875 00025999999999987765543 56666766
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.++++.+|+++.. ....++.++
T Consensus 894 L~~~G~TVIvisHdl~~i--~~aDrIivL 920 (972)
T 2r6f_A 894 LVDNGDTVLVIEHNLDVI--KTADYIIDL 920 (972)
T ss_dssp HHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 666688999999998864 357777777
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-12 Score=146.51 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=69.2
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee---eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK---LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQY 354 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~---~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~ 354 (541)
++..+.+.....++.+..+|+|++|++.|+++++. + ++|+|+|||+.|.+..... ++.+.
T Consensus 713 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~------~p~~p~lLILDEPTsGLD~~~~~-----------~l~~l 775 (842)
T 2vf7_A 713 TLREVGLGYLRLGQPATELSGGEAQRIKLATELRR------SGRGGTVYVLDEPTTGLHPADVE-----------RLQRQ 775 (842)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS------CCSSCEEEEEECTTTTCCHHHHH-----------HHHHH
T ss_pred HHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh------CCCCCCEEEEECCCCCCCHHHHH-----------HHHHH
Confidence 45555554433466778899999999999999876 5 6999999999987765543 66667
Q ss_pred hhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 355 FNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 355 l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
|.+..+.+.++++.+|+++.. ..+.++.++
T Consensus 776 L~~L~~~G~tVIvisHdl~~i--~~aDrii~L 805 (842)
T 2vf7_A 776 LVKLVDAGNTVIAVEHKMQVV--AASDWVLDI 805 (842)
T ss_dssp HHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 777666789999999998866 357777777
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-12 Score=142.97 Aligned_cols=93 Identities=10% Similarity=0.169 Sum_probs=67.1
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
.+..+.+......+.+..+|||++|++.|+++++. +-.+++|+|+|||+.|.+..... ++.+.|.+
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~---~p~~p~LLILDEPTsGLD~~~~~-----------~L~~lL~~ 853 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK---RDTGRTLYILDEPTVGLHFEDVR-----------KLVEVLHR 853 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS---CCCSSEEEEEESTTTTCCHHHHH-----------HHHHHHHH
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh---CCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 44444444434456778899999999999999865 00135899999998887665543 56666766
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.|+++.+|+++... ...++.++
T Consensus 854 L~~~G~TVIvI~HdL~~i~--~ADrIivL 880 (916)
T 3pih_A 854 LVDRGNTVIVIEHNLDVIK--NADHIIDL 880 (916)
T ss_dssp HHHTTCEEEEECCCHHHHT--TCSEEEEE
T ss_pred HHhcCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 6666899999999988653 36777666
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-12 Score=141.67 Aligned_cols=94 Identities=15% Similarity=0.024 Sum_probs=52.9
Q ss_pred ceeeeccccccccc--ceeecce----------EEE---EEEcCCCCCHHHHHHHHhcC--C-CCCCeeecccCCcccee
Q psy91 79 YIGFATLPEQVHRK--SVKKGFD----------FTL---MVVGESGLGKSTLVNSLFLS--D-LYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 79 ~i~~~~l~~~~~~~--~iL~~is----------l~i---aIiGpSGsGKSTLL~~L~~~--~-~~G~i~~~~~~G~~~~~ 140 (541)
.+.+.+|+..|+.+ ++|+.++ +++ ||+|||||||||||++|+|. | .+|.|+ +.|..+..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt---~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVT---RCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CC---CSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEE---EcCEEEEE
Confidence 46778888888753 3444332 333 99999999999999999665 4 689999 88875321
Q ss_pred cccccccccccccEEEEeCCCccccccccccCCCcccceecc
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
. .......+++.+||++|+..+++.+ +|.+++.++
T Consensus 87 ~-~~~~~~~~~~~i~~v~Q~~~l~~~~------tv~e~i~~~ 121 (608)
T 3szr_A 87 K-KLVNEDKWRGKVSYQDYEIEISDAS------EVEKEINKA 121 (608)
T ss_dssp E-ECSSSSCCEEEESCC---CCCCCHH------HHHTTHHHH
T ss_pred e-cCCccccceeEEeeecccccCCCHH------HHHHHHHHH
Confidence 1 1111224456789999999999888 898888764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-12 Score=115.44 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=63.4
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceeccccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
...++++.|+++.+++++||++ +|+||||||||||+++|++ .+.+|+|. +.|..+.. . ....
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~---~~g~~i~~----~--~~~~-- 77 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVK---SPTYTLVE----E--YNIA-- 77 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCC---CCTTTCEE----E--EEET--
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEE---ECCEeeee----e--ccCC--
Confidence 4457788998888999999887 9999999999999999932 27789999 88874321 1 1111
Q ss_pred EEEEeCCCccccccccccCCCcccceec
Q psy91 154 WGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 154 ~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
.+++|+..++ .+ |+.+++.+
T Consensus 78 -~~~~q~~~l~-~l------tv~e~l~~ 97 (158)
T 1htw_A 78 -GKMIYHFDLY-RL------ADPEELEF 97 (158)
T ss_dssp -TEEEEEEECT-TC------SCTTHHHH
T ss_pred -Ccceeccccc-cC------CcHHHHHH
Confidence 1799998888 88 99998854
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-12 Score=133.08 Aligned_cols=71 Identities=7% Similarity=-0.040 Sum_probs=54.9
Q ss_pred CCCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
+|+|++|++.|+++++. ++ +++|+|||..|-+..... .+.++|.+.. .+.++++.+|+.+
T Consensus 296 lSgGe~qrl~lA~~l~~------~~~~~~LlLDEpt~~LD~~~~~-----------~l~~~L~~l~-~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL------GADTPSVVFDEVDAGIGGAAAI-----------AVAEQLSRLA-DTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHH------CCSSSEEEESSTTTTCCHHHHH-----------HHHHHHHHHT-TTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHh------CCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHh-CCCEEEEEeCcHH
Confidence 59999999999998766 67 999999998886655443 5666676665 4788999999987
Q ss_pred hhhhcccceeEEE
Q psy91 374 IEERGVKLRLTVV 386 (541)
Q Consensus 374 i~~~~l~~rvnvI 386 (541)
+.. ...++.++
T Consensus 358 ~~~--~~d~i~~l 368 (415)
T 4aby_A 358 IAA--RAHHHYKV 368 (415)
T ss_dssp HHT--TCSEEEEE
T ss_pred HHh--hcCeEEEE
Confidence 653 46677666
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=121.16 Aligned_cols=90 Identities=51% Similarity=0.655 Sum_probs=53.9
Q ss_pred CCceeeecccccccccceeecceEEEEEEcCCCCCHHHHHHHHhcCCC--CCCeeecccCCccceecccccccccccccE
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL--YGDRKVPNVNGSNTVIEVAGTKVRGRQYPW 154 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~iaIiGpSGsGKSTLL~~L~~~~~--~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~ 154 (541)
.+.|++++|+++|+++.++++++|.|+|+||||||||||+++|++... +| ..|. ....... .....+
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~------~~~~----~~~~~~t-~~~~~i 77 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE------YPGP----SHRIKKT-VQVEQS 77 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC------CCSC----C-----C-CEEEEE
T ss_pred cCcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC------CCCc----ccCCccc-eeeeeE
Confidence 456899999999999999999999999999999999999999966432 32 1111 1111111 122457
Q ss_pred EEEeCCCccccccccccCCCcccceeccc
Q psy91 155 GVVEGSTVLTPSLIGSLFQTDRDYIGFAT 183 (541)
Q Consensus 155 g~V~Q~~~l~~~lig~~~qtv~e~l~~~~ 183 (541)
++++|...+++.+ ++.+|+.++.
T Consensus 78 ~~v~q~~~~~~~L------tv~Dt~g~~~ 100 (418)
T 2qag_C 78 KVLIKEGGVQLLL------TIVDTPGFGD 100 (418)
T ss_dssp ECC------CEEE------EEEECC----
T ss_pred EEEEecCCcccce------eeeechhhhh
Confidence 8999999998899 9999999873
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=8e-11 Score=108.62 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=48.5
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhh-----hhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW-----RACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~-----~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
|++++|++.|++++.. +++++++|||..|-+..+..-. ..++.-...++.+.+.+..+.+.++++.+|+
T Consensus 85 s~g~~qrv~iAral~~------~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHC------FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp HHHHHHHHHHHHHTTC------EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHHHcCC------cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 6678899999999877 9999999999665433221000 0001111235566666665568899999999
Q ss_pred chhhh
Q psy91 372 MDIEE 376 (541)
Q Consensus 372 ~di~~ 376 (541)
++...
T Consensus 159 ~~~~~ 163 (171)
T 4gp7_A 159 PEEVE 163 (171)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87554
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-10 Score=109.09 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=37.7
Q ss_pred ccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCc
Q psy91 89 VHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTV 162 (541)
Q Consensus 89 ~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~ 162 (541)
-+++.+|+++||++ ||+||||||||||+++|++.. |.+. ++ ..++.++|++|+.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l--G~~~---~~--------------~~~~~i~~v~~d~- 68 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL--GQNE---VE--------------QRQRKVVILSQDR- 68 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH--TGGG---SC--------------GGGCSEEEEEGGG-
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh--chhc---cc--------------ccCCceEEEeCCc-
Confidence 35678999999998 999999999999999996532 4443 22 1245689999984
Q ss_pred cccccccccCCCcccceec
Q psy91 163 LTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 163 l~~~lig~~~qtv~e~l~~ 181 (541)
+++.+ ++.+++.+
T Consensus 69 ~~~~l------~~~~~~~~ 81 (245)
T 2jeo_A 69 FYKVL------TAEQKAKA 81 (245)
T ss_dssp GBCCC------CHHHHHHH
T ss_pred Ccccc------CHhHhhhh
Confidence 66667 77665543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-11 Score=110.58 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=28.4
Q ss_pred CCCCCCCCCcceEEeee-----EEEeeecCeeeeEEEEcC--CCCCCC
Q psy91 293 VPNVNDRQGKTTTIEKK-----SMDIEERGVKLRLTVVDT--PGFGDS 333 (541)
Q Consensus 293 ~~~ls~g~~q~v~I~~~-----~~~i~e~gv~~~L~I~De--Pg~Gd~ 333 (541)
+..+|+|++|++.|+++ +.. +++++|+|| |..+.+
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~------~p~llilDEigp~~~ld 115 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKD------RRKVIIIDEIGKMELFS 115 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHC------TTCEEEECCCSTTGGGC
T ss_pred ccCcCHHHHHHHHHHhhcccccccc------CCCEEEEeCCCCcccCC
Confidence 44578999999999996 666 899999999 766544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-10 Score=110.83 Aligned_cols=93 Identities=18% Similarity=0.081 Sum_probs=56.7
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeeccc---CCccceecccccccccccccEEEEeCCCc---------------
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNV---NGSNTVIEVAGTKVRGRQYPWGVVEGSTV--------------- 162 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~---~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~--------------- 162 (541)
+|+||||||||||||+|++ .+..|+|. + .|..+. ......+.+.+|||+|.+.
T Consensus 173 ~l~G~sG~GKSTll~~l~g~~~~~~G~i~---~~~~~g~~~t----~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVS---EKLQRGRHTT----TTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp EEECSTTSSHHHHHHHHSTTCCCC----------------CC----CSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred EEECCCCCcHHHHHHHhccccccccccee---cccCCCCCce----eeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 9999999999999999944 57789998 6 676322 1111112235799999875
Q ss_pred -cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC-Cccch
Q psy91 163 -LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES-GLGKS 212 (541)
Q Consensus 163 -l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~-g~~ks 212 (541)
++|++ ++ +|+.|+... ...+...++.++|+.+||. +..++
T Consensus 246 ~l~~~~------~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 246 HYFKEF------GD-KQCFFSDCN---HVDEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp GGSTTS------SS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhc------cc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCHHHHHH
Confidence 46666 78 888886221 1234556788999999996 44443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-10 Score=111.65 Aligned_cols=83 Identities=47% Similarity=0.546 Sum_probs=37.2
Q ss_pred ecccccccccceeecceEEEEEEcCCCCCHHHHHHHHhcC---CCCCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 83 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS---DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 83 ~~l~~~~~~~~iL~~isl~iaIiGpSGsGKSTLL~~L~~~---~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
.||+++|+++.++++++|.|+|+||||||||||+++|++. +..| +. ..|..+ .. ... ...+++++|
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~---~~g~~~----~~--t~~-~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS---GAAEKI----ER--TVQ-IEASTVEIE 70 (301)
T ss_dssp ----------------CEEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc---cCCccc----CC--cce-EeeEEEEec
Confidence 4788999999999999999999999999999999998543 4556 55 555421 11 111 235789999
Q ss_pred CCccccccccccCCCcccceecc
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
...+...+ ++.+++.++
T Consensus 71 ~~~~~~~l------tv~Dt~g~~ 87 (301)
T 2qnr_A 71 ERGVKLRL------TVVDTPGYG 87 (301)
T ss_dssp ---CCEEE------EEEEEC---
T ss_pred CCCcccCc------chhhhhhhh
Confidence 98888888 999998886
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-10 Score=117.28 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=55.1
Q ss_pred ceeeecccccccccceeecceEEE--------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL--------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i--------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+.+ ++.|++.+ |+++|+++ ||+|||||||||||++|+|... .|..+. .......
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---------~g~~~~----~~~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---------EGEPAT----HTQPGVQ 80 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------------CCSSCE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---------cCCcCC----CCCccce
Confidence 345555 77888777 88888765 8999999999999999987632 233111 0001112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT 183 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~ 183 (541)
...++|++|+..+++.+ |+.+|+.|+.
T Consensus 81 ~~~i~~v~Q~~~l~~~l------tv~D~~~~g~ 107 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKL------TIVSTVGFGD 107 (427)
T ss_dssp EEEEEEEEEC--CEEEE------EEEEEECCCC
T ss_pred EeeEEEEeecCcccccc------chhhhhhhhh
Confidence 34689999999999999 9999999984
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-10 Score=107.57 Aligned_cols=64 Identities=20% Similarity=0.046 Sum_probs=43.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
+|+||||||||||+++|++... .+. +.+... . ..+....++.++|++|+..+++.+ ++.+++..
T Consensus 24 ~l~GpnGsGKSTLl~~l~gl~~--~i~---~~~~~~--~--~~~~~~~~~~i~~~~q~~~~~~~~------~~~~~l~~ 87 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLRERIP--NLH---FSVSAT--T--RAPRPGEVDGVDYHFIDPTRFQQL------IDQGELLE 87 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHHST--TCE---ECCCEE--S--SCCCTTCCBTTTBEECCHHHHHHH------HHTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHhhCC--ceE---Eccccc--c--cCCcccccCCCeeEecCHHHHHHH------HhcCCcee
Confidence 9999999999999999965432 344 433311 1 111112245689999999888888 88877753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-09 Score=105.25 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=40.6
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP 165 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~ 165 (541)
...|++|||+| +|+||||||||||+++|++.. +|.|. + |..+.. ..+....+..++|++|+..+++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~---~-g~~~~~---~~~~~~~~~~i~~~~~~~~~~~ 81 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFY---F-SVSCTT---RKKREKEKEGVDYYFIDKTIFE 81 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEE---E-CCCEEC---SCCCSSCCBTTTBEECCHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEE---E-eecccC---CCCCcccccCCeEEECCHHHHH
Confidence 34689999998 999999999999999996644 39998 6 652211 1111123456899999988887
Q ss_pred cc
Q psy91 166 SL 167 (541)
Q Consensus 166 ~l 167 (541)
.+
T Consensus 82 ~~ 83 (218)
T 1z6g_A 82 DK 83 (218)
T ss_dssp HH
T ss_pred Hh
Confidence 66
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.8e-10 Score=113.01 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++... --+++++|+|||..+.+..... .+.+++.+.. .+.++++.+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~--~~~~~~lllDEp~~~LD~~~~~-----------~l~~~l~~~~-~~~~vi~~t 279 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALME--IKPSPFYVLDEVDSPLDDYNAE-----------RFKRLLKENS-KHTQFIVIT 279 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTT--TSCCSEEEEESCCSSCCHHHHH-----------HHHHHHHHHT-TTSEEEEEC
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhc--cCCCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHhc-CCCeEEEEE
Confidence 3445679999999999999874100 0167999999998876654432 4555555543 367888899
Q ss_pred ccchh
Q psy91 370 KSMDI 374 (541)
Q Consensus 370 ~~~di 374 (541)
|+.++
T Consensus 280 H~~~~ 284 (322)
T 1e69_A 280 HNKIV 284 (322)
T ss_dssp CCTTG
T ss_pred CCHHH
Confidence 98654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-09 Score=104.65 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=62.1
Q ss_pred EEEcCCCCCHHHHHHHHh-cCCCCCCeeeccc---CCccceecccccccccccccEEEEeCCCccc-----cccccccCC
Q psy91 103 MVVGESGLGKSTLVNSLF-LSDLYGDRKVPNV---NGSNTVIEVAGTKVRGRQYPWGVVEGSTVLT-----PSLIGSLFQ 173 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~-~~~~~G~i~~~~~---~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~-----~~lig~~~q 173 (541)
+|+||||||||||+|+|+ ..+..|+|. + .|+.+. ..........+|||+|.+.+. +++
T Consensus 169 ~l~G~sG~GKSTLln~l~~~~~~~G~i~---~~~~~G~~~t----~~~~~~~~~~~g~v~d~pg~~~~~l~~~l------ 235 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLTGEELRTQEVS---EKTERGRHTT----TGVRLIPFGKGSFVGDTPGFSKVEATMFV------ 235 (302)
T ss_dssp EEECSTTSSHHHHHHHHHSCCCCCSCC------------CC----CCEEEEEETTTEEEESSCCCSSCCGGGTS------
T ss_pred EEECCCCCCHHHHHHHHHHhhCcccccc---cccCCCCCce----eeEEEEEcCCCcEEEECcCcCcCcccccC------
Confidence 999999999999999996 345689998 6 666221 111111123579999988653 667
Q ss_pred Ccccce--ecccc------ccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 174 TDRDYI--GFATL------PEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 174 tv~e~l--~~~~~------~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
|+ +++ .|+.+ ... ....+...++.++++.+|+...........+.+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 88 777 45411 011 123344567889999999986333334444444
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-10 Score=113.30 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=42.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
.|.+++|++.|+ ..+|+++|++| ||+||||||||||+++|++.. .|.|.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 488999999998 78999999988 999999999999999996643 55553
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.9e-10 Score=116.26 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=69.0
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCc---cceecccc-
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGS---NTVIEVAG- 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~---~~~~~~~~- 144 (541)
+.+.++++++.|+ +..+|+++ |.| +|+|||||||||||++|+ ..++.|.|. +.|+ .+......
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~---~~G~r~~ev~~~~~~~ 205 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVG---LIGERGREVKDFIENI 205 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE---EESCCHHHHHHHHHTT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEE---EeceecHHHHHHHHhh
Confidence 4689999999998 67899999 988 999999999999999994 456678887 6665 21110000
Q ss_pred cccccccccEEEEeCC-CccccccccccCCCcccceecc
Q psy91 145 TKVRGRQYPWGVVEGS-TVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~-~~l~~~lig~~~qtv~e~l~~~ 182 (541)
......++.++||+|+ ..+++++ ++.+|+.+.
T Consensus 206 ~~~~~l~r~i~~v~q~~~~~~~~~------~v~~~~~~~ 238 (438)
T 2dpy_A 206 LGPDGRARSVVIAAPADVSPLLRM------QGAAYATRI 238 (438)
T ss_dssp THHHHHHTEEEEEECTTSCHHHHH------HHHHHHHHH
T ss_pred ccccccCceEEEEECCCCCHHHHH------HHHHHHHHH
Confidence 0011244578999994 6677778 888777654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-09 Score=108.01 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccc
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKK 370 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~ 370 (541)
+.+..+|+|++|++.|+++++.-..--.+|+++|+|||..|.+..... .+.++|.+..+.+.++++.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~-----------~~~~~l~~l~~~g~tvi~itH 343 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKE-----------KIASVLKELERLNKVIVFITH 343 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHH-----------HHHHHHHGGGGSSSEEEEEES
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEec
Confidence 456679999999999998876100000179999999998876654443 566677777667899999999
Q ss_pred cchhhhhcccceeEEE
Q psy91 371 SMDIEERGVKLRLTVV 386 (541)
Q Consensus 371 ~~di~~~~l~~rvnvI 386 (541)
++++. ....++.++
T Consensus 344 ~~~~~--~~~d~~~~l 357 (365)
T 3qf7_A 344 DREFS--EAFDRKLRI 357 (365)
T ss_dssp CHHHH--TTCSCEEEE
T ss_pred chHHH--HhCCEEEEE
Confidence 98863 344566655
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-09 Score=110.72 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=57.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++++++.|+...+|+++++.+ +|+|||||||||||++|++ .+..|.|. +.|.+......+......
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~---i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA---VLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE---EEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE---EEEEcCcccccccchHHH
Confidence 467888999998888999999876 9999999999999999943 45578887 555522111100011122
Q ss_pred cccEEEEeCCCccccc
Q psy91 151 QYPWGVVEGSTVLTPS 166 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~ 166 (541)
+..+++++|+..+++.
T Consensus 106 ~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIR 121 (337)
T ss_dssp GGGSTTGGGCTTEEEE
T ss_pred hhhheeeccCcccccc
Confidence 3456677776655543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-08 Score=105.61 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=57.3
Q ss_pred eeeccccc---ccc--ccee---------ecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccc
Q psy91 81 GFATLPEQ---VHR--KSVK---------KGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNT 138 (541)
Q Consensus 81 ~~~~l~~~---~~~--~~iL---------~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~ 138 (541)
.|++++++ |+. ..+| +++++.| +|+||||||||||+++|++ .+..|.|. +.|..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~---ie~~~- 212 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT---IEDVP- 212 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE---EESSS-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE---ECCcc-
Confidence 77788877 753 3445 9999887 9999999999999999944 45678888 55541
Q ss_pred eecccccccccccccEEEEe-CCCcc--ccccccccCCCcccceecc
Q psy91 139 VIEVAGTKVRGRQYPWGVVE-GSTVL--TPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~V~-Q~~~l--~~~lig~~~qtv~e~l~~~ 182 (541)
.. .....+..+++++ |+..+ ++.. |+++++.++
T Consensus 213 --e~---~~~~~~~~v~~v~~q~~~~~~~~~~------t~~~~i~~~ 248 (361)
T 2gza_A 213 --EL---FLPDHPNHVHLFYPSEAKEEENAPV------TAATLLRSC 248 (361)
T ss_dssp --CC---CCTTCSSEEEEECC----------C------CHHHHHHHH
T ss_pred --cc---CccccCCEEEEeecCcccccccccc------CHHHHHHHH
Confidence 11 1112345689999 77654 3556 888888876
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-09 Score=105.81 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=48.2
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc--ccccEEEEeCCCc-cccccccccCCCccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG--RQYPWGVVEGSTV-LTPSLIGSLFQTDRD 177 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~--~~~~~g~V~Q~~~-l~~~lig~~~qtv~e 177 (541)
+|+||||||||||+++|++ .+..|.|. +.|.++........... .+..++||+|+.. ++|.+ ++.+
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~~~g~V~---l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~------~v~e 174 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKNEGTKVL---MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT------VLSK 174 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEE---EECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH------HHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEE---EEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH------HHHH
Confidence 9999999999999999944 45678998 77763211000001111 1346899999988 88888 8888
Q ss_pred ceecc
Q psy91 178 YIGFA 182 (541)
Q Consensus 178 ~l~~~ 182 (541)
++.++
T Consensus 175 ~l~~~ 179 (302)
T 3b9q_A 175 AVKRG 179 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-08 Score=114.22 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCceeeecccccc---cccceeecceE--EE-EEEcCCCCCHHHHHHHHhc
Q psy91 77 RDYIGFATLPEQV---HRKSVKKGFDF--TL-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 77 ~~~i~~~~l~~~~---~~~~iL~~isl--~i-aIiGpSGsGKSTLL~~L~~ 121 (541)
.+.+.+++..... ++..+++|++| .+ +|+||||||||||||+|++
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHH
T ss_pred CCcEEEEEeECceEccCCceEeeeccCCCcEEEEECCCCCChHHHHHHHHh
Confidence 4567777765555 45678999998 45 9999999999999999954
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.1e-08 Score=102.08 Aligned_cols=76 Identities=22% Similarity=0.155 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDY 178 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~ 178 (541)
.+||+||||||||||||+|+| .+..|+|. ++|.. .. + .++++|+. .++.+ ++.|+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~---~~g~~----~t-------~--~~~v~q~~-~~~~l------tv~D~ 127 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAK---TGVVE----VT-------M--ERHPYKHP-NIPNV------VFWDL 127 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCC---CCC---------------C--CCEEEECS-SCTTE------EEEEC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEE---ECCee----cc-------e--eEEecccc-ccCCe------eehHh
Confidence 459999999999999999955 56788888 66651 11 1 27899974 57778 89998
Q ss_pred eeccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 179 IGFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 179 l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
+.++. . ...+.++++.+++.+
T Consensus 128 ~g~~~-~--------~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 128 PGIGS-T--------NFPPDTYLEKMKFYE 148 (413)
T ss_dssp CCGGG-S--------SCCHHHHHHHTTGGG
T ss_pred hcccc-h--------HHHHHHHHHHcCCCc
Confidence 87762 1 235677788887654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-08 Score=94.66 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=44.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCC----CCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCc---
Q psy91 103 MVVGESGLGKSTLVNSLFLSD----LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTD--- 175 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv--- 175 (541)
+|+||||||||||+++|++.. ..|.|. +.|. . . ....+..++|+||+..+|+.+ ++
T Consensus 20 ~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~---~ttr----~--~--~~~e~~gi~y~fq~~~~f~~~------~~~~~ 82 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVS---HTTR----Q--P--RPGEVHGEHYFFVNHDEFKEM------ISRDA 82 (219)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCTTTEEECCC---EECS----C--C--CTTCCBTTTBEECCHHHHHHH------HHTTC
T ss_pred EEECCCCCCHHHHHHHHhccCCCCceEEEEE---ecCC----C--C--CcccccCceEEECCHHHHHHH------HhcCH
Confidence 899999999999999995432 345555 4443 1 1 112234689999999888888 77
Q ss_pred -ccceecc
Q psy91 176 -RDYIGFA 182 (541)
Q Consensus 176 -~e~l~~~ 182 (541)
.|++.+.
T Consensus 83 f~E~~~~~ 90 (219)
T 1s96_A 83 FLEHAEVF 90 (219)
T ss_dssp EEEEEEET
T ss_pred HHHHHHHH
Confidence 6777764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.9e-08 Score=92.50 Aligned_cols=64 Identities=20% Similarity=0.130 Sum_probs=44.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
+|+||||||||||+++|++... .+. +.|..+ ...........++|++|+..+++.+ ++.+++.+
T Consensus 11 ~l~Gp~GsGKSTl~~~L~~~~~--~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 74 (205)
T 3tr0_A 11 IISAPSGAGKTSLVRALVKALA--EIK---ISISHT----TRPKRPGDQEGVDYFFIDETRFQAM------VKEGAFLE 74 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHSS--SEE---ECCCEE----CSCCCTTCCBTTTBEECCHHHHHHH------HHHTCEEE
T ss_pred EEECcCCCCHHHHHHHHHhhCC--CeE---Eeceec----cCCCchhHhcCceEEeccHHHHHHH------HhcCcEEe
Confidence 9999999999999999965432 455 555522 1122122345678999999888888 77666554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-08 Score=99.32 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=58.9
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeeccc---CCccceecccccccccccccEEEEeCCCcccc----ccccccCC
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNV---NGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP----SLIGSLFQ 173 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~---~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~----~lig~~~q 173 (541)
+|+||||||||||+|+|++ .+..|+|. . .|+.+. ... .......|||+|.+.+.+ ++
T Consensus 177 ~lvG~sG~GKSTLln~L~g~~~~~~G~I~---~~~~~G~~tt----~~~-~~~~~~~g~v~dtpg~~~~~l~~l------ 242 (307)
T 1t9h_A 177 VFAGQSGVGKSSLLNAISPELGLRTNEIS---EHLGRGKHTT----RHV-ELIHTSGGLVADTPGFSSLEFTDI------ 242 (307)
T ss_dssp EEEESHHHHHHHHHHHHCC----------------------C----CCC-CEEEETTEEEESSCSCSSCCCTTC------
T ss_pred EEECCCCCCHHHHHHHhccccccccccee---eecCCCcccc----cHH-HHhhcCCEEEecCCCccccccccC------
Confidence 9999999999999999954 45678887 5 565221 111 111112699999987765 45
Q ss_pred Cccccee--cccc---------ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 174 TDRDYIG--FATL---------PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 174 tv~e~l~--~~~~---------~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
++ +++. |+.+ .......+....+.++++.+++...........+.++.
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~ 301 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIK 301 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 77 7773 3311 00011223445688899999998766666666666553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-08 Score=98.94 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=50.2
Q ss_pred EEEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccc--ccccEEEEeCCCccccccccccCCCccc
Q psy91 102 LMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRG--RQYPWGVVEGSTVLTPSLIGSLFQTDRD 177 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~--~~~~~g~V~Q~~~l~~~lig~~~qtv~e 177 (541)
++|+||||||||||+++| ...+..|.|. +.|.++........... .+..++||+|+..++|.. ++.+
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~---l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~------~v~~ 175 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVM---FCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAA------LAYD 175 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEE---EECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHH------HHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEE---EEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHH------HHHH
Confidence 399999999999999999 3456789998 77763321100001111 234689999999998888 8888
Q ss_pred ceecc
Q psy91 178 YIGFA 182 (541)
Q Consensus 178 ~l~~~ 182 (541)
++.++
T Consensus 176 ~v~~~ 180 (304)
T 1rj9_A 176 AVQAM 180 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-08 Score=106.48 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=53.7
Q ss_pred ecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc--cccccccccEEEEeCCCcccc
Q psy91 96 KGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG--TKVRGRQYPWGVVEGSTVLTP 165 (541)
Q Consensus 96 ~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~--~~~~~~~~~~g~V~Q~~~l~~ 165 (541)
+++||++ +|+||||||||||+++|++ .+..|.|. +.|.++...... ......+..++||+|+..+++
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~---l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM---LAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE---EECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE---EecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 5677754 9999999999999999944 45678888 655422110000 011112456899999988888
Q ss_pred ccccccCCCcccceecc
Q psy91 166 SLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 166 ~lig~~~qtv~e~l~~~ 182 (541)
.+ ++++++.++
T Consensus 361 ~~------tV~e~l~~a 371 (503)
T 2yhs_A 361 AS------VIFDAIQAA 371 (503)
T ss_dssp HH------HHHHHHHHH
T ss_pred HH------HHHHHHHHH
Confidence 88 888888775
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-08 Score=101.67 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=56.3
Q ss_pred CceeeecccccccccceeecceE------------------------EE-EEEcCCCCCHHHHHHHHhc--C--CCCCCe
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDF------------------------TL-MVVGESGLGKSTLVNSLFL--S--DLYGDR 128 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl------------------------~i-aIiGpSGsGKSTLL~~L~~--~--~~~G~i 128 (541)
..|.+++|++.|+ +++++|++ .+ ||+||||||||||+++|.+ . +..|.|
T Consensus 36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 4578899999994 56666653 33 9999999999999999944 3 678888
Q ss_pred eecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 129 KVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 129 ~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
.+-+.+|.. ... .....+|++ |...+++.+ ++.+++.+
T Consensus 114 ~vi~~d~~~----~~~----~~~~~~~~v-q~~~~~~~~------~~~~~~~~ 151 (308)
T 1sq5_A 114 ELITTDGFL----HPN----QVLKERGLM-KKKGFPESY------DMHRLVKF 151 (308)
T ss_dssp EEEEGGGGB----CCH----HHHHHHTCT-TCTTSGGGB------CHHHHHHH
T ss_pred EEEecCCcc----CcH----HHHHhCCEe-ecCCCCCCc------cHHHHHHH
Confidence 821115541 111 112235666 666666666 66665544
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.7e-07 Score=88.28 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCCCeeEeeccchhhhh-------hhhhcc-ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 239 PYSDIGFATLPEQVHRK-------SVKKGF-DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 239 ~~~~vG~~~~~~q~~~~-------~vk~g~-~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+++||..+|.+...+ ..+++. .++++++|.+|+|||||+|+|+.......... .+ .+. ....
T Consensus 8 ~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~---~~---~t~--~~~~ 79 (270)
T 1h65_A 8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF---QS---EGP--RPVM 79 (270)
T ss_dssp CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---SC---CCS--SCEE
T ss_pred hhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCC---CC---cce--eeEE
Confidence 35688999999864433 444454 78999999999999999999997663221111 11 111 1111
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
..++.+ ..++.|+||||+++..
T Consensus 80 ~~~~~~--~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 80 VSRSRA--GFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEET--TEEEEEEECCCSEETT
T ss_pred EEEeeC--CeEEEEEECCCCCCCc
Confidence 222333 3579999999998753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-07 Score=96.97 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEcCCCCCHHHHHHHHhc--C-CCCCCeeecccC-CccceecccccccccccccEEEEeCCCccccccccccCCCcccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--S-DLYGDRKVPNVN-GSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDY 178 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~-~~~G~i~~~~~~-G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~ 178 (541)
+|+||||||||||+|+|++ . +..|+|. .. |. ... ......+++++|+..++++. +++++
T Consensus 219 ~lvG~sG~GKSTLln~L~g~~~~~~~G~I~---~~~G~----g~~----tt~~~~i~~v~q~~~l~dtp------gv~e~ 281 (358)
T 2rcn_A 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVS---NVSGL----GQH----TTTAARLYHFPHGGDVIDSP------GVREF 281 (358)
T ss_dssp EEECCTTSSHHHHHHHHHCCSSCCCCC------------------------CCCEEEECTTSCEEEECH------HHHTC
T ss_pred EEECCCCccHHHHHHHHhccccccccCCcc---ccCCC----Ccc----ceEEEEEEEECCCCEecCcc------cHHHh
Confidence 9999999999999999955 3 5678777 44 44 111 12344689999999888888 88874
Q ss_pred eeccccccchhhHhHhhhHHHHHHHhCCCCc
Q psy91 179 IGFATLPEQVHRKSVKKGFDFTLMVVGESGL 209 (541)
Q Consensus 179 l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~ 209 (541)
... .....+....+.++++.+|+..+
T Consensus 282 ~l~-----~l~~~e~~~~~~e~l~~~gl~~f 307 (358)
T 2rcn_A 282 GLW-----HLEPEQITQGFVEFHDYLGHCKY 307 (358)
T ss_dssp CCC-----CCCHHHHHHTSGGGGGGTTCSSS
T ss_pred hhc-----CCCHHHHHHHHHHHHHHcCCchh
Confidence 221 22334445556666777776553
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-08 Score=101.01 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=49.9
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc--cccccEEEEeCCCc-cccccccccCCCccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR--GRQYPWGVVEGSTV-LTPSLIGSLFQTDRD 177 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~--~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e 177 (541)
+|+||||||||||++.|++ .+..|.|. +.|.++.......... ..+..++|++|+.. ++|.+ ++.+
T Consensus 161 ~lvG~nGsGKTTll~~Lag~l~~~~G~V~---l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~------tv~e 231 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKVL---MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT------VLSK 231 (359)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEE---EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH------HHHH
T ss_pred EEEcCCCChHHHHHHHHHhhccccCCEEE---EecccccccchhHHHHHHHHhcCeEEEEecccccChhh------hHHH
Confidence 9999999999999999944 45678888 7776321100000011 12346899999988 88888 8888
Q ss_pred ceecc
Q psy91 178 YIGFA 182 (541)
Q Consensus 178 ~l~~~ 182 (541)
++.++
T Consensus 232 ~l~~~ 236 (359)
T 2og2_A 232 AVKRG 236 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-07 Score=91.64 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=41.6
Q ss_pred ceeeecccccccccceeecceE--EE-EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccc----ccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDF--TL-MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAG----TKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl--~i-aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~----~~~~~ 149 (541)
.+.++|+...++. +++| .+ +|+|||||||||||++| +..+.+|.|. ++|..+...... .....
T Consensus 9 ~l~l~~~~~~~~~-----~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~---~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----TFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH---FRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-----EECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---------------------CGGG
T ss_pred EEEEEeeecccCC-----EEEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEE---ECCEEcccCCccccccchhhH
Confidence 4677777765543 2222 12 99999999999999999 5568889999 777743111111 01111
Q ss_pred ccccEEEEeCC
Q psy91 150 RQYPWGVVEGS 160 (541)
Q Consensus 150 ~~~~~g~V~Q~ 160 (541)
.+..++||+|+
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 24568888874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-07 Score=95.21 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=45.1
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
+.++++++++.|+ +..+|+++ |.| +|+|||||||||||++|++ .++.|.+. +.|+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~---~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA---LIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE---EESC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE---Eecc
Confidence 3578899999998 67899999 998 9999999999999999944 45556666 5554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-07 Score=96.02 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=38.9
Q ss_pred ccceeecceEEE-----EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccc
Q psy91 91 RKSVKKGFDFTL-----MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNT 138 (541)
Q Consensus 91 ~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~ 138 (541)
+..+|+++||+| ||+|||||||||||++| +..+..|+|. ++|+.+
T Consensus 16 ~~~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~~ 67 (483)
T 3euj_A 16 NWNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN---FRNTTE 67 (483)
T ss_dssp EETTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC---CCCTTS
T ss_pred ccccccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE---ECCEEc
Confidence 356899999988 99999999999999999 4568889999 888743
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-07 Score=94.94 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=40.3
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
++++++ | ..+++++++.+ +|+|||||||||||++|++ .+..|.|. +.|.
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~---i~~~ 207 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS---IEDT 207 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE---EESS
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE---ECCe
Confidence 667777 6 56899999887 9999999999999999944 56678888 6665
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=9e-08 Score=109.35 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=33.5
Q ss_pred ceeeecccccc-------cccceeecceEEE------EEEcCCCCCHHHHHHHHh
Q psy91 79 YIGFATLPEQV-------HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 79 ~i~~~~l~~~~-------~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~ 120 (541)
.+.+++..... +++.|+++|+|++ +|+|||||||||||++++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 56666655443 3467999999976 999999999999999984
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-08 Score=97.74 Aligned_cols=74 Identities=24% Similarity=0.187 Sum_probs=50.8
Q ss_pred EEE-EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc--cccccEEEEeCCCccccccccccCCC
Q psy91 100 FTL-MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR--GRQYPWGVVEGSTVLTPSLIGSLFQT 174 (541)
Q Consensus 100 l~i-aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~--~~~~~~g~V~Q~~~l~~~lig~~~qt 174 (541)
..+ +|+||||||||||+++|+ ..+..|.|. +.|.++.......... ..+..+.+++|...+.|.+ +
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~---l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~------~ 199 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV---IAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA------V 199 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE---EEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH------H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE---EEeecccccchHHHHHHHHHHcCceEEeccccCCHHH------H
Confidence 455 999999999999999994 356678888 6666321110001111 1223466999999999988 8
Q ss_pred cccceecc
Q psy91 175 DRDYIGFA 182 (541)
Q Consensus 175 v~e~l~~~ 182 (541)
+++++.++
T Consensus 200 v~e~l~~~ 207 (328)
T 3e70_C 200 AYDAIQHA 207 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888765
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-06 Score=97.87 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=33.1
Q ss_pred Cceeeecccccc-----cccceeecceEE----E-EEEcCCCCCHHHHHHHHhc
Q psy91 78 DYIGFATLPEQV-----HRKSVKKGFDFT----L-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 78 ~~i~~~~l~~~~-----~~~~iL~~isl~----i-aIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.+++..... +++.++++++++ + +|+||||||||||||+|++
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEeccccEEEccCCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHH
Confidence 345665543332 456789999985 4 9999999999999999955
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.4e-08 Score=103.66 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=51.3
Q ss_pred eeeecccccccccceeecceE-EE------EEEcCCCCCHHHHHHH--Hhc--CCCCCCeeecccCCccceecccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDF-TL------MVVGESGLGKSTLVNS--LFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl-~i------aIiGpSGsGKSTLL~~--L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+..+++.+..++..+|++|++ .| +|+||||||||||+++ +.+ .+..|.|+ ++|+. .. ....
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~---v~g~~----~~-~~~~ 84 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF---VTFEE----TP-QDII 84 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE---EESSS----CH-HHHH
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE---EEEeC----CH-HHHH
Confidence 344445555556789999999 77 9999999999999999 433 34678999 77772 11 1112
Q ss_pred cccccEEEEeCCCc
Q psy91 149 GRQYPWGVVEGSTV 162 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~ 162 (541)
..++.+||++|+..
T Consensus 85 ~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 85 KNARSFGWDLAKLV 98 (525)
T ss_dssp HHHGGGTCCHHHHH
T ss_pred HHHHHcCCChHHhh
Confidence 23346788888754
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-07 Score=99.62 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=42.7
Q ss_pred ceeeecccccccccceeecc---eEE-EEEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 79 YIGFATLPEQVHRKSVKKGF---DFT-LMVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~i---sl~-iaIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
.+.++++++.|+...+|+++ ... ++|+|||||||||||++|++ .+..|.|. +.|.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~---~~ed 203 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL---TVED 203 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE---EEES
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE---Eecc
Confidence 56888999998877777776 123 39999999999999999943 45678888 5555
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.1e-07 Score=88.89 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=33.9
Q ss_pred eeeecccccccccceeecceE---EE-EEEcCCCCCHHHHHHHHhc--CCC-CCCee
Q psy91 80 IGFATLPEQVHRKSVKKGFDF---TL-MVVGESGLGKSTLVNSLFL--SDL-YGDRK 129 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl---~i-aIiGpSGsGKSTLL~~L~~--~~~-~G~i~ 129 (541)
+.+++|++. .+|+++++ .+ +|+|||||||||||++|++ .+. .|.|.
T Consensus 6 ~~l~~l~~~----~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp CCGGGSSCC----THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred CChHHCCCH----HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 456666653 57888873 12 9999999999999999954 344 67776
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-07 Score=93.92 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=53.9
Q ss_pred cccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCC-c
Q psy91 88 QVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST-V 162 (541)
Q Consensus 88 ~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~-~ 162 (541)
.++...+++++++.+ +|+||||||||||+++|++....|.+. ++|..+.. .......+.++++||.. .
T Consensus 29 ~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~---i~g~~l~~----~~~~~~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFIS---VKGPELLN----MYVGESERAVRQVFQRAKN 101 (274)
T ss_dssp HHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE---EETTTTCS----STTHHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEE---EEcHHHHh----hhhhHHHHHHHHHHHHHHh
Confidence 445566888888876 999999999999999997665567777 66763321 11111223466777764 4
Q ss_pred cccccccccCCCcccceec
Q psy91 163 LTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 163 l~~~lig~~~qtv~e~l~~ 181 (541)
..|.+ ++.+++.+
T Consensus 102 ~~p~i------~~~Deid~ 114 (274)
T 2x8a_A 102 SAPCV------IFFDEVDA 114 (274)
T ss_dssp TCSEE------EEEETCTT
T ss_pred cCCCe------Eeeehhhh
Confidence 55666 66666654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-06 Score=80.27 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=34.4
Q ss_pred EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 103 MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
+|+||||||||||+++|++. ..+| |. ++|.. .. .....++.+||++|+.
T Consensus 5 ~i~G~nG~GKTTll~~l~g~~~~~G-i~---~~g~~----~~--~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKASEVLKSSG-VP---VDGFY----TE--EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHHHHHTT-CC---CEEEE----CC--EEETTSSEEEEEEEET
T ss_pred EEECCCCChHHHHHHHHHhhcccCC-EE---EcCEe----cc--hhHhhhceEEEEEEec
Confidence 89999999999999999432 1678 87 66652 11 1223456789988864
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.5e-07 Score=87.05 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=27.5
Q ss_pred Cceeeecc-cccc-cccceeecceEEE---------EEEcCCCCCHHHHHHHHhc
Q psy91 78 DYIGFATL-PEQV-HRKSVKKGFDFTL---------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 78 ~~i~~~~l-~~~~-~~~~iL~~isl~i---------aIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.++|+ ++.| ++..+|+++||+| +|+|+|||||||+.++|+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999 9999 7788999999877 8999999999999999954
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-06 Score=89.57 Aligned_cols=45 Identities=84% Similarity=1.314 Sum_probs=37.1
Q ss_pred CCceeeecccccccccceeecceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.++|++.+++.+|+.+.+++++++.|+|+|+||+|||||++.|++
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTT
T ss_pred CceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhC
Confidence 457899999999999999999999999999999999999999854
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-06 Score=79.65 Aligned_cols=71 Identities=10% Similarity=0.004 Sum_probs=43.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccc--cccccccCCCcccce
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLT--PSLIGSLFQTDRDYI 179 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~--~~lig~~~qtv~e~l 179 (541)
+||+||||||||||+++|++. +.. .++||+|+..++ ..+ ++.++.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~----------~~~-----------------~i~~v~~d~~~~~~~~~------~~~~~~ 55 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALART----------LGE-----------------RVALLPMDHYYKDLGHL------PLEERL 55 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHH----------HGG-----------------GEEEEEGGGCBCCCTTS------CHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH----------hCC-----------------CeEEEecCccccCcccc------cHHHhc
Confidence 499999999999999999652 100 468888887665 345 666654
Q ss_pred eccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 180 GFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 180 ~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
.+. + ..+.....+.+..+++.+++..
T Consensus 56 ~~~-~--~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 56 RVN-Y--DHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp HSC-T--TSGGGBCHHHHHHHHHHHHTTC
T ss_pred CCC-C--CChhhhhHHHHHHHHHHHHcCC
Confidence 443 1 1111122334555666666544
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-06 Score=81.76 Aligned_cols=70 Identities=26% Similarity=0.209 Sum_probs=40.1
Q ss_pred EEE-EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcc
Q psy91 100 FTL-MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDR 176 (541)
Q Consensus 100 l~i-aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~ 176 (541)
.++ +|+||||||||||+++|++ .+.+|... ..|..+....... .....+++++|...+++ +++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~---~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~-------~~~~ 91 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG---LNGSVIWIDTENT---FRPERIREIAQNRGLDP-------DEVL 91 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSC---CCHHHHHHHHHHTTSCH-------HHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCEEEEEECCCC---CCHHHHHHHHHHcCCCH-------HHHh
Confidence 345 9999999999999999954 44443332 2233222111110 11123456666544433 3788
Q ss_pred cceecc
Q psy91 177 DYIGFA 182 (541)
Q Consensus 177 e~l~~~ 182 (541)
+|+.+.
T Consensus 92 ~~~~~~ 97 (231)
T 4a74_A 92 KHIYVA 97 (231)
T ss_dssp HTEEEE
T ss_pred hcEEEE
Confidence 888876
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-06 Score=81.61 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred ceeeecccccccccceeecceE----EEEEEcCCCCCHHHHHHHHhcC
Q psy91 79 YIGFATLPEQVHRKSVKKGFDF----TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl----~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.++|+++.|+. .+|+++.+ .++|+|+||||||||++.|++.
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3688999999973 67777432 2399999999999999999654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-07 Score=93.70 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred eeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
.++++.+.|+...+++++++.+ +|+||||||||||+++|++....|.+. ++|.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~---~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT---ASGS 107 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEE---EEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEE---ecHH
Confidence 4567777787778899988876 999999999999999996655567777 5555
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.85 E-value=7.7e-06 Score=75.71 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
++|+||||||||||+++|++.+..|.|. ++|.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~---i~~d 43 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVH---FHSD 43 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEE---ECTT
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEE---Eccc
Confidence 3899999999999999998887788888 7776
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.4e-06 Score=82.06 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=15.9
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHh-cCC
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLF-LSD 123 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~-~~~ 123 (541)
+..+++||++ +|+||||||||||+++|+ +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567888876 999999999999999998 753
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.6e-07 Score=91.62 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=42.5
Q ss_pred eeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
.++++.+.|+...+++++++.+ +|+||||||||||+++|++....|.+. ++|.
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~---~~~~ 83 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT---ASGS 83 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE---EEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE---eeHH
Confidence 5667777787777888888876 999999999999999996655567777 5555
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-06 Score=88.15 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=45.2
Q ss_pred EEEcCCCCCHHHHHHHHhcC----------CCCCCeeecccCCccceeccccc------------ccccccccEEEE---
Q psy91 103 MVVGESGLGKSTLVNSLFLS----------DLYGDRKVPNVNGSNTVIEVAGT------------KVRGRQYPWGVV--- 157 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~----------~~~G~i~~~~~~G~~~~~~~~~~------------~~~~~~~~~g~V--- 157 (541)
+|+|+|||||||||+.|++. ++.|+|. ++|..+.. .... ....+...++++
T Consensus 8 ~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~---idg~~l~~-~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS---VDDQLIGD-RATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC---EEEEEECT-TSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC---ccHHHHhC-CCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 89999999999999999543 4778888 65552211 0000 001223345666
Q ss_pred eCCCccccccccccCCCcccceecc
Q psy91 158 EGSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 158 ~Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
+|+..+++.. ++.|++.++
T Consensus 84 ~q~~~~~~~~------~v~E~~~l~ 102 (318)
T 1nij_A 84 LDKGNIQFDR------LVIECTGMA 102 (318)
T ss_dssp HHHTSCCCSE------EEEEEETTC
T ss_pred HhcCCCCCCE------EEEeCCCCC
Confidence 5766666667 888888876
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=83.66 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=38.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
-.+++.++|.+|+|||||+|.|...+.......+ .+........++.+| .++.|+||||+++.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~--------gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA--------GTTRDAVDTSFTYNQ--QEFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--------------CTTSEEEEETT--EEEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCC--------CeEEEEEEEEEEECC--ceEEEEECCCCCcC
Confidence 3578999999999999999999865421111111 111111122233344 37999999998764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.79 E-value=2e-05 Score=72.36 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=16.8
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||||++|
T Consensus 30 ~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999999
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.1e-06 Score=81.56 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=24.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
+|+||||||||||+++|++ +..|.++ ++|.
T Consensus 6 ~l~G~~GaGKSTl~~~L~~-~~~g~~~---i~~d 35 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA-QLDNSAY---IEGD 35 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH-HSSSEEE---EEHH
T ss_pred EEECCCCCcHHHHHHHHhc-ccCCeEE---Eccc
Confidence 8999999999999999975 4556677 6555
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.68 E-value=7.1e-05 Score=70.70 Aligned_cols=65 Identities=25% Similarity=0.344 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+.++++|.+|+|||||+|.|........ .+.....+..+. ...+. ..-...+.|+||||+++..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~-----~~~~~~~t~~~~--~~~~~-~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAF-----ASKTPGRTQHIN--YFSVG-PAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSC-----TTCCCCSCCCEE--EEEES-CTTSCSEEEEECCCCCSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccee-----ecCCCCcccceE--EEEec-CCCCCcEEEEcCCCCCccc
Confidence 46899999999999999999987652111 111111122221 11111 1114679999999998763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=3.4e-06 Score=85.96 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=32.2
Q ss_pred eeeecccccccccceeecceEE-------------EEEEcCCCCCHHHHHHHHhc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFT-------------LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~-------------iaIiGpSGsGKSTLL~~L~~ 121 (541)
+..++++..||+..+++++++. ++|+||||||||||+++|++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4556677777777777766643 28999999999999999943
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-06 Score=89.10 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=40.2
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCC----CCeeecc-cCCccceecccccccccccccEEEEeCCCccccccccccCCCc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLY----GDRKVPN-VNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTD 175 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~----G~i~~~~-~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv 175 (541)
+|+||||||||||+++|++ .+.. |.+++.+ ..|. ... ...... ..+++++|+..++ .. ++
T Consensus 174 ~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~----~~~-~~~~~~-~~I~~~~q~~~~~-~~------t~ 240 (365)
T 1lw7_A 174 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD----EQA-MQYSDY-PQMALGHQRYIDY-AV------RH 240 (365)
T ss_dssp EEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC----TTS-SCTTTH-HHHHHHHHHHHHH-HH------HH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC----ccc-CChhHH-HHHHHHHHHHHHH-HH------hc
Confidence 9999999999999999944 4555 6666110 0122 110 111112 3467777765433 34 77
Q ss_pred ccceecc
Q psy91 176 RDYIGFA 182 (541)
Q Consensus 176 ~e~l~~~ 182 (541)
.+|+.+.
T Consensus 241 ~~nl~~~ 247 (365)
T 1lw7_A 241 SHKIAFI 247 (365)
T ss_dssp CSSEEEE
T ss_pred cCCEEEE
Confidence 8888776
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.5e-06 Score=81.57 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=24.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
++|+||||||||||+++|++.. |.+. ++|.
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~--g~~~---i~~d 61 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADET--GLEF---AEAD 61 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH--CCEE---EEGG
T ss_pred EEEECCCCCCHHHHHHHHHHhh--CCeE---Eccc
Confidence 3999999999999999995533 7777 6666
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.2e-05 Score=77.10 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=52.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC---------
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS--------- 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~--------- 333 (541)
++++++|.+|+|||||+|+|.......... ..+ . |.. ...+. +..++.|+||||+++.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~---~~g-~--T~~--~~~~~-----~~~~~~l~DtpG~~~~~~~~~~~~~ 166 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA---QPG-I--TKG--IQWFS-----LENGVKILDTPGILYKNIFSEDLAA 166 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------------CC--SCEEE-----CTTSCEEESSCEECCCCCCSHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC---CCC-C--ccc--eEEEE-----eCCCEEEEECCCcccCcCCCChhhc
Confidence 689999999999999999999765321111 111 1 111 11111 1357899999999875
Q ss_pred ----ccchhhhhhhhhhhhhhhhhhhhhh
Q psy91 334 ----INSEESWRACCSYIDDQFRQYFNDE 358 (541)
Q Consensus 334 ----~~~~~~~~~i~~yI~~~~~~~l~~e 358 (541)
.+....+..+.+|+..++.++|.+.
T Consensus 167 ~~~~~d~~~~~~~~~~~l~~~~~~~l~~~ 195 (262)
T 3cnl_A 167 KLLLVGSLPVERIEDQRIFERAFEIFARS 195 (262)
T ss_dssp HHHHTTSSCGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3445566677777777776666554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.6e-06 Score=77.30 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=23.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCC---CCCeeecccCCcc
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDL---YGDRKVPNVNGSN 137 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~---~G~i~~~~~~G~~ 137 (541)
++|+|+||||||||+++|++ .+. .|.|. ++|..
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~---~dg~~ 42 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVK---RHAHG 42 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE---C----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE---EcCcc
Confidence 38999999999999999933 333 68898 77763
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=7.9e-05 Score=69.23 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=38.7
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+-|++..+++...++....-.+++.++|.+|+|||||+|.|...... ... ..+.........+.-++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~ 78 (199)
T 2p5s_A 8 HHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENI--------SATLGVDFQMKTLIVDGERTV 78 (199)
T ss_dssp --------------------CEEEEEESSTTSSHHHHHHHHHHCCCC-------------------CEEEEEEETTEEEE
T ss_pred ccccCCcccccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC-ccC--------CCCccceeEEEEEEECCEEEE
Confidence 45677777766666766777899999999999999999999866521 111 112222222222333455788
Q ss_pred EEEEcCCCCC
Q psy91 322 LTVVDTPGFG 331 (541)
Q Consensus 322 L~I~DePg~G 331 (541)
+.|+|+||..
T Consensus 79 l~i~Dt~G~~ 88 (199)
T 2p5s_A 79 LQLWDTAGQE 88 (199)
T ss_dssp EEEEECTTCT
T ss_pred EEEEECCCCc
Confidence 9999999964
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.55 E-value=6.4e-05 Score=77.56 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=62.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhh
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRA 342 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~ 342 (541)
.+++++|.+|+|||||+|+|+.............+.....|.... .+.+ .-.+.++||||+++...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~-----~~~~~liDtPG~~~~~~------- 226 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPL-----DEESSLYDTPGIINHHQ------- 226 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEES-----SSSCEEEECCCBCCTTS-------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEe-----cCCeEEEeCCCcCcHHH-------
Confidence 478999999999999999998764211011111122222222222 1221 22389999999987532
Q ss_pred hhhhhhhhhhhhhhhhcccCcc-eeecc-ccc---hhhhh-c-ccceeEEEcCCCCCCCCCcHHH
Q psy91 343 CCSYIDDQFRQYFNDENRQGKT-TTIEK-KSM---DIEER-G-VKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 343 i~~yI~~~~~~~l~~e~~~~rt-~~i~~-~~~---di~~~-~-l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
+.+++......++......... ..+.. +.. ++... - -..++.++.+++|.|.+..++.
T Consensus 227 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 227 MAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp GGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred HHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccH
Confidence 2233333333332222222211 11111 010 00000 0 1235678889999999988776
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=2.9e-05 Score=72.79 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+||||||||||+++|++
T Consensus 7 i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 38999999999999999954
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=9.7e-05 Score=71.05 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=38.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
-.+++.++|.+|+|||||+|+|.......... ....+........+.-+ ..++.|+||||+++..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~-------~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGT-------AAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTE 92 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------CCSCEEEEEEET--TEEEEEEECCSCC---
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCC-------CCCceeeeEEEEEEEeC--CceEEEEECCCccCCC
Confidence 35789999999999999999998766422111 11111111111222222 3578999999998764
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.2e-05 Score=87.89 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCceeeec-----ccccc-cccceeecceE------------EE-EEEcCCCCCHHHHHHHH
Q psy91 77 RDYIGFAT-----LPEQV-HRKSVKKGFDF------------TL-MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 77 ~~~i~~~~-----l~~~~-~~~~iL~~isl------------~i-aIiGpSGsGKSTLL~~L 119 (541)
.+.|.+++ |++.| ++..++++++| .+ +|+|||||||||||++|
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 35689999 99999 66789999987 35 99999999999999999
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.4e-05 Score=77.11 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=63.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhh
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRA 342 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~ 342 (541)
.+++++|.+|+|||||+|+|+........ ....+.....|..... +.+ ...+.++||||+++...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~-~~~~~~~~gtT~~~~~--~~~-----~~~~~liDtPG~~~~~~------- 227 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN-VITTSYFPGTTLDMIE--IPL-----ESGATLYDTPGIINHHQ------- 227 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC-CCEEEECTTSSCEEEE--EEC-----STTCEEEECCSCCCCSS-------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc-ceeecCCCCeEEeeEE--EEe-----CCCeEEEeCCCcCcHHH-------
Confidence 47999999999999999999876211111 1111212222333222 221 23489999999986521
Q ss_pred hhhhhhhhhhhhhhhhcccCcc-eeecc-ccc---hhhh-hc-ccceeEEEcCCCCCCCCCcHHH
Q psy91 343 CCSYIDDQFRQYFNDENRQGKT-TTIEK-KSM---DIEE-RG-VKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 343 i~~yI~~~~~~~l~~e~~~~rt-~~i~~-~~~---di~~-~~-l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
+..++..+...++....+.... ..+.. +.+ ++.. .- -..++.++.+++|.|.+..++.
T Consensus 228 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 228 MAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp GGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred HHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccH
Confidence 2234444444433221222211 11111 010 0000 00 1235678889999999987765
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.1e-05 Score=74.26 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+||||||||||+++|++
T Consensus 25 v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999955
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=1e-05 Score=75.84 Aligned_cols=26 Identities=42% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEcCCCCCHHHHHHHHhcC-CCCCCe
Q psy91 103 MVVGESGLGKSTLVNSLFLS-DLYGDR 128 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~-~~~G~i 128 (541)
+|+||||||||||+++|++. ...|.+
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 99999999999999999432 245666
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00018 Score=64.15 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=39.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... ..... .++.+......+.-++...++.++||||.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYK--------KTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSS--------CCCSSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCC--------CceEEEEEEEEEEECCEEEEEEEEcCCCc
Confidence 357899999999999999999987542 11111 11111112222333555789999999994
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=6.6e-05 Score=69.11 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=17.8
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||+++|++
T Consensus 9 ~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999954
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.36 E-value=6.7e-05 Score=70.15 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=17.6
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
..+++||||++ +|+||+||||||+.+.|+.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999987 9999999999999999953
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00027 Score=63.78 Aligned_cols=61 Identities=30% Similarity=0.426 Sum_probs=40.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ... ..+.........+.-++....+.++|+||.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSY--------ITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CC--------TTTBSEEEEEEEEEETTEEEEEEEEEETTG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-Ccc--------CCCceeEEEEEEEEECCEEEEEEEEcCCCc
Confidence 3578999999999999999999875522 111 112222223333444666789999999993
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00031 Score=62.68 Aligned_cols=60 Identities=15% Similarity=0.302 Sum_probs=39.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|........ . ..+.........+.-++...++.++||||.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN-I--------NPTIGASFMTKTVQYQNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-C--------CCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC-C--------CCceeEEEEEEEEEECCeEEEEEEEcCCCc
Confidence 47899999999999999999987652211 1 111111222222333455788999999997
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0003 Score=62.67 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... ... .+.........+.-++...++.++|+||.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 62 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKE--------PTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCC--------CccceeEEEEEEEECCEEEEEEEEECCCC
Confidence 3689999999999999999998765221 111 11222222222233455788999999994
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00029 Score=63.45 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ... ..++........+.-++....+.++|+||.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD-TQL--------FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-C------------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCC--------CCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3578999999999999999999865421 111 112222222233344566789999999994
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00028 Score=63.02 Aligned_cols=61 Identities=23% Similarity=0.403 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .....+ ++........+.-+|....+.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~--------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKF-NDKHIT--------TLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCC--------CCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCC--------ccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 57899999999999999999986652 221111 11111122223335667889999999953
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=5.7e-05 Score=78.05 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=35.4
Q ss_pred eeecce---EE-EEEEcCCCCCHHHHHHHHhc--CCC-CCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 94 VKKGFD---FT-LMVVGESGLGKSTLVNSLFL--SDL-YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 94 iL~~is---l~-iaIiGpSGsGKSTLL~~L~~--~~~-~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
+|++++ .. ++|+|||||||||||++|++ .+. .|.|. +.|.. ... ..+..+++|+|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~---~~e~~----~e~----~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII---TIEDP----IEY----VFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE---EEESS----CCS----CCCCSSSEEEE
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE---Eeccc----Hhh----hhccCceEEEe
Confidence 555544 22 39999999999999999954 333 57776 43331 111 22345688888
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00021 Score=65.66 Aligned_cols=63 Identities=32% Similarity=0.415 Sum_probs=37.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
.++++++|.+|+|||||+|.|........ .+.....+..+... .+ +.++.++||||+++....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~t~~~~~~--~~-----~~~~~l~Dt~G~~~~~~~ 85 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLAR-----TSSKPGKTQTLNFY--II-----NDELHFVDVPGYGFAKVS 85 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC------------------CCEEEE--EE-----TTTEEEEECCCBCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccc-----cCCCCCceeeEEEE--EE-----CCcEEEEECCCCCccccC
Confidence 57899999999999999999987642211 11111112222211 11 237999999999886543
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0002 Score=69.96 Aligned_cols=63 Identities=27% Similarity=0.462 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.++++++|.+|+|||||+|+|+......... . ...+ +......+..+| ..+.|+||||+++..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---~---~~~t--~~~~~~~~~~~~--~~l~liDTpG~~~~~ 98 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---F---QAEG--LRPVMVSRTMGG--FTINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---S---CC-C--CCCEEEEEEETT--EEEEEEECCCSEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCC---C---CCcc--eeeEEEEEEECC--eeEEEEECCCCCCcc
Confidence 5899999999999999999998765311111 0 1111 111122222333 489999999998653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00027 Score=63.09 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=38.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|...... ... ..++........+.-+|...++.++|+||.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 62 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSF--------ITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C---------------CCEEEEEEESSSCEEEEEEECCTTG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCC--------CCccceeEEEEEEEECCEEEEEEEEeCCCC
Confidence 478999999999999999999866521 111 112222222223334566788999999994
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00038 Score=62.63 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|...... ... ..++.+......+.-++....+.++||||.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 73 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSC--------CCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCC--------CCceeeEEEEEEEEECCeEEEEEEEECCCc
Confidence 378999999999999999999865421 111 112222222223334555688999999994
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=58.64 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=40.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.++++++|.+|+|||||+|.|...... ....+. ....+ ...+.-++....+.++|+||..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPT------IEDSY---LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTT------CCEEE---EEEEEETTEEEEEEEEECCSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCC------cccee---EEEEEeCCcEEEEEEEECCCch
Confidence 3578999999999999999999865422 111111 11111 2223345667889999999953
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.26 E-value=4.2e-05 Score=82.28 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=31.8
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
.+++++++.+ +|+|||||||||||++|++ .+..|.|. +.|.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit---ied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS---IEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE---EESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE---EcCc
Confidence 4677777765 9999999999999999944 45567777 5554
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00053 Score=68.82 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=37.2
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.++|.+|+|||||+|.|.+...... +.....|.. ........ +...++.++||||.++..
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~~~i~------s~~~~tT~~--~~~~~~~~-~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTKVSII------SPKAGTTRM--RVLGVKNI-PNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCCSCC------CSSSCCCCS--CEEEEEEE-TTTEEEEEEECCCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCcccc------CCCCCceee--EEEEEEec-CCCCeEEEEECcCCCccc
Confidence 67899999999999999987663211 111111111 11111111 224679999999998754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.25 E-value=1.8e-05 Score=79.98 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|||+||||||||||+++|.+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999943
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00046 Score=62.34 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=40.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|.......... ..++.+......+.-+|....+.++|+||..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF--------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCC--------CCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCc--------CCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5789999999999999999998765322111 1122222222223345667899999999953
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00046 Score=63.41 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=41.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-.++++++|.+|+|||||+|.|........ . ..++.+......+.-++...++.|+||||...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD-S--------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS-C--------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-C--------CCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 357899999999999999999987652211 1 11222222222233345578899999999743
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00052 Score=62.43 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=40.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... .. ..++........+.-++-...+.++|+||.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKD-DS--------NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT-TC--------CCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CC--------CCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 5789999999999999999998665221 11 122233333333344555689999999995
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00047 Score=63.08 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=38.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.+.++++|.+|+|||||+|.|........ +.....+..+.... ...++.++||||+++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~t~~~~~~~-------~~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFV------SKTPGKTRSINFYL-------VNSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCC------CSSCCCCCCEEEEE-------ETTTEEEEECCCBSSSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccc------cCCCCCccCeEEEE-------ECCcEEEEECCCCccccC
Confidence 46899999999999999999987652111 11111112111111 134688999999987643
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00048 Score=61.28 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|....... ... .+.........+.-++...++.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE-FQE--------STIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCC--------CccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5789999999999999999998655221 111 111112222222334457889999999953
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00047 Score=62.00 Aligned_cols=60 Identities=30% Similarity=0.457 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|........ .. .+.........+.-++....+.++||||.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-CP--------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSS-CT--------TSCCCCEEEEEEEETTEEEEEEEEECTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CC--------CccceEEEEEEEEECCeEEEEEEEECCCC
Confidence 57899999999999999999987653211 11 11111111122233455788999999994
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00056 Score=63.36 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=40.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|....... ... .++.+......+.-++...++.|+||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFV--------STVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCC--------CCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcC--------CccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 4789999999999999999998765221 111 122222222233345567899999999973
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00034 Score=68.02 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=40.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.+++.++|.+|+|||||+|+|...........+. + .+.......+ .-+ ..++.|+||||+.+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~---~--~t~~~~~~~~--~~~--~~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ---T--LTKTCSKSQG--SWG--NREIVIIDTPDMFSWKD 86 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC---C--CCCSCEEEEE--EET--TEEEEEEECCGGGGSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC---c--eeeeeEEEEE--EeC--CCEEEEEECcCCCCCCC
Confidence 5789999999999999999998765332211110 0 1111111111 122 35799999999986543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00048 Score=64.35 Aligned_cols=61 Identities=30% Similarity=0.483 Sum_probs=41.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... ... ...++.+......+.-+|....+.|+||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~--------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPG--------QGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTT--------CCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCC--------CCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999987542 111 1223333333333444666789999999994
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00047 Score=63.16 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... ... .++.+......+.-++...++.|+||||.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTE--------ATIGVDFRERAVDIDGERIKIQLWDTAGQ 79 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCS-SCC--------CCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCC--------CCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 4789999999999999999998765221 111 11111112222333555789999999994
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=66.35 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.++|+|+||||||||++.|.+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356699999999999999999543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00014 Score=69.66 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
|+|+|+||||||||+++|.+. .|.|. +.|+
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~--~g~v~---~~~~ 52 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY--KNDIC---LLTE 52 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG--TTTEE---EECC
T ss_pred EEEECCCCCCHHHHHHHHHhc--cCCeE---EEec
Confidence 499999999999999999775 67788 5555
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00041 Score=63.70 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
-.+.++++|.+|+|||||+|.|....
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35789999999999999999998765
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00057 Score=62.68 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=41.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|....... .. ..++........+.-++....+.|+|+||.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SY--------ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CC--------CCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CC--------CCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 45789999999999999999998655221 11 112222222333344566789999999994
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00054 Score=61.88 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=39.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|........ .. .++........+.-++...++.|+|+||.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEF-QE--------STIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTT-SC--------CCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCc-CC--------CCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 357899999999999999999987653211 11 11111111222233455788999999994
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00055 Score=63.79 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=39.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... .. ..++........+.-+|....+.|+||||.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SF--------ITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCC-SS--------SCCCSCCEEEEEEEETTEEEEEEEECCTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-cc--------CCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 4789999999999999999998665211 11 111222222223334566789999999994
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00021 Score=81.97 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=32.9
Q ss_pred Cceeeecccccc-----cccceeecceEEE------EEEcCCCCCHHHHHHHH
Q psy91 78 DYIGFATLPEQV-----HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 78 ~~i~~~~l~~~~-----~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L 119 (541)
+.+.+++....+ ++..++++++|.+ +|+||||||||||||++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 346666655444 2356899999987 99999999999999999
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00058 Score=63.34 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=40.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ... ..++........+.-++....+.|+||||.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQY--------KATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSC--------CCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCC--------CCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 3578999999999999999999876522 111 112222222333334555788999999995
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00053 Score=63.77 Aligned_cols=62 Identities=27% Similarity=0.424 Sum_probs=40.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|....... ... .++.+......+.-++....+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYI--------STIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCC--------CSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCC--------CcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35789999999999999999998765221 111 112222222223335667899999999954
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00066 Score=62.16 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|....... ...+ +..+......+.-++....+.|+|+||..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~--------t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVS--------TVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC--------CCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCC--------ceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 35789999999999999999998765221 1111 11112222222334557889999999964
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00025 Score=65.84 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|+||||||||++.|.+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 355699999999999999999654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00058 Score=62.87 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... .. ..+.........+.-++...++.|+||||.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDH-NI--------SPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCT-TC--------CCCSSEEEEEEEEECSSSEEEEEEEEECCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-Cc--------CCCcceeEEEEEEEeCCEEEEEEEEcCCCc
Confidence 4789999999999999999998765211 11 111222222222333445788999999994
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00052 Score=63.25 Aligned_cols=61 Identities=28% Similarity=0.499 Sum_probs=38.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..+++.++|.+|+|||||+|.|........ . ..++.+......+.-++....+.|+|+||.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-C--------KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-----------------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-C--------CCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 457899999999999999999987552211 1 111222222223333566789999999994
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0014 Score=73.21 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=25.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
-.+++.|+|.+|+|||||+|.|.+.+...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~ 96 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLP 96 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45789999999999999999999876443
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00047 Score=61.50 Aligned_cols=61 Identities=28% Similarity=0.417 Sum_probs=38.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|..... .....+.. . ... . ..+.-++-...+.++||||..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~----~--~~~-~--~~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTV----E--DTY-R--QVISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCS----C--EEE-E--EEEEETTEEEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCc----c--ccE-E--EEEEECCEEEEEEEEECCCchh
Confidence 47899999999999999999987552 22111111 1 111 1 1122344567899999999653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00079 Score=60.63 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=40.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|....... ... .++..... ..+.-+|....+.++|+||..+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVS-DYD--------PTIEDSYT-KICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCS-SCC--------TTCCEEEE-EEEEETTEEEEEEEEECCCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCcc-ccC--------CCcCceEE-EEEEECCEEEEEEEEECCCchh
Confidence 4789999999999999999998764221 111 11111111 2233456678999999999643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00088 Score=66.98 Aligned_cols=61 Identities=28% Similarity=0.402 Sum_probs=37.6
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+.++|.+|+|||||+|.|.......... ..+.|.. .....+..+ ..++.++||||+.+..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~------~~~tTr~--~i~~i~~~~--~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISP------RPQTTRK--RLRGILTEG--RRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCS------SSCCCCS--CEEEEEEET--TEEEEEEECCCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecC------CCCceeE--EEEEEEEeC--CcEEEEecCccccchh
Confidence 48899999999999999999776321111 1111111 011111122 5689999999998753
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.08 E-value=5.1e-05 Score=81.28 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=40.4
Q ss_pred eeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
.++++...|....+++++++.+ +|+||||+|||||+++|++....+.+. ++|.
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~---i~g~ 98 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT---ASGS 98 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE---EEGG
T ss_pred HHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eehh
Confidence 4556666666666788887776 999999999999999996655566666 5665
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00077 Score=61.66 Aligned_cols=61 Identities=28% Similarity=0.411 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ... ..+..+......+.-++...++.|+||||..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PEL--------AATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTC--------CCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccC--------CCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence 478999999999999999999876522 111 1122222222223335557899999999953
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00019 Score=70.76 Aligned_cols=108 Identities=39% Similarity=0.697 Sum_probs=67.2
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc------ccCcceeeccccchhhhhcccceeEEEcC
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN------RQGKTTTIEKKSMDIEERGVKLRLTVVDT 388 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~------~~~rt~~i~~~~~di~~~~l~~rvnvIpv 388 (541)
.+|+.+++.|+..||.|++.- ++..+..-..... ....++.+......+...+...+++++|+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTL-----------in~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDT 72 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTL-----------INSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 72 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHH-----------HHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEEC
T ss_pred cCccEEEEEEECCCCCCHHHH-----------HHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEEC
Confidence 357789999999999997521 1101111000000 01222222223333444556678999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccccccchhhh
Q psy91 389 PGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFA 433 (541)
Q Consensus 389 i~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~i~d~~v~ 433 (541)
+|++|.++..++|.++.+||+++|..|+.++....|..+.++++|
T Consensus 73 pG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~ 117 (274)
T 3t5d_A 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQ 117 (274)
T ss_dssp CCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCC
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCcee
Confidence 999999999999999999999999999988877766666555544
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00058 Score=63.45 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=37.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|........ . ..++.+......+.-++....+.|+||||.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-S--------NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC---------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-C--------CCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 357899999999999999999986552211 1 112222222223334566789999999994
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00046 Score=72.20 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.8
Q ss_pred eecceEEE------EEEcCCCCCHHHHHHHHhcC
Q psy91 95 KKGFDFTL------MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 95 L~~isl~i------aIiGpSGsGKSTLL~~L~~~ 122 (541)
-+++++++ +|+|+|||||||||++|++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 47888888 99999999999999999654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=9.4e-05 Score=73.61 Aligned_cols=30 Identities=33% Similarity=0.335 Sum_probs=25.5
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
..+|+++++.+ +|+||||||||||++.|++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34688888766 9999999999999999944
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00083 Score=59.90 Aligned_cols=61 Identities=30% Similarity=0.304 Sum_probs=36.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++.++|.+|+|||||+|.|........... ..+ .......+.-++....+.++|+||..+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-------ENS--EDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC---------------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC-------CCc--CCeeeEEEEECCeEEEEEEEECCCccc
Confidence 6799999999999999999975431111110 011 122222333456678999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00063 Score=62.48 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=38.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|........ .. .++........+.-++....+.|+||||.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HD--------LTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CC--------CcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 357899999999999999999987652211 11 11111111222333555789999999994
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00029 Score=62.90 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||||.+|
T Consensus 27 ~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999999
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00088 Score=61.02 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=38.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee-EEEeeecCe---------eeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK-SMDIEERGV---------KLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~-~~~i~e~gv---------~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... .... ..++.+... ...+.-++. ...+.++|+||.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 80 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKF--------ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSC--------CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCc--------ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc
Confidence 357899999999999999999987552 1111 112222221 111222222 678999999997
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00027 Score=72.49 Aligned_cols=62 Identities=6% Similarity=0.046 Sum_probs=41.9
Q ss_pred CCCCCCCcceEEeeeEEEe---eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccc
Q psy91 295 NVNDRQGKTTTIEKKSMDI---EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKK 370 (541)
Q Consensus 295 ~ls~g~~q~v~I~~~~~~i---~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~ 370 (541)
.+|+|++|++.|+.+++.+ .+..-+++++++|||..+.+..... .+.+++.+.. .++++.+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~-----------~l~~~l~~~~---qt~i~~th 329 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQ-----------YLLDLAASVP---QAIVTGTE 329 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHH-----------HHHHHHHHSS---EEEEEESS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHH-----------HHHHHHHhcC---cEEEEEEe
Confidence 5899999999999998721 1121279999999997776544432 4445554432 46666777
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0011 Score=58.57 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++.++|.+|+|||||+|.|....... ...+. . ... . ...+.-++....+.++|+||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~----~--~~~-~--~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPT----I--EDF-Y--RKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTT----C--CEE-E--EEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCC----c--cee-E--EEEEEECCEEEEEEEEECCCch
Confidence 3689999999999999999998665221 11111 0 111 1 1223335667889999999954
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00027 Score=68.82 Aligned_cols=29 Identities=34% Similarity=0.258 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh---cC--CCCCCee
Q psy91 101 TLMVVGESGLGKSTLVNSLF---LS--DLYGDRK 129 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~---~~--~~~G~i~ 129 (541)
.|+|+||||||||||+++|+ +. ++.|.++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 45999999999999999995 53 2345553
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00034 Score=73.53 Aligned_cols=80 Identities=8% Similarity=-0.034 Sum_probs=53.9
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
.+..+|+|+++++.|+.+++..+. -+++++|+|||..+.+..+.. .+.+++.+..+.+.++++.+|+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~--~~~~~lllDEp~~~LD~~~~~-----------~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSY--QPSPFFVLDEVDAALDITNVQ-----------RIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTS--SCCSEEEESSTTTTCCHHHHH-----------HHHHHHHHHCBTTBEEEEECSC
T ss_pred ccccCCcchHHHHHHHHHHHHhcC--CCCCEEEeCCCcccCCHHHHH-----------HHHHHHHHHhcCCCEEEEEECC
Confidence 345689999999999998763110 168999999997776554442 5566666554446778888888
Q ss_pred chhhhhcccceeEEE
Q psy91 372 MDIEERGVKLRLTVV 386 (541)
Q Consensus 372 ~di~~~~l~~rvnvI 386 (541)
..+. ....++.+|
T Consensus 397 ~~~~--~~~d~~~~~ 409 (430)
T 1w1w_A 397 NTMF--EKSDALVGV 409 (430)
T ss_dssp HHHH--TTCSEEEEE
T ss_pred HHHH--HhCCEEEEE
Confidence 5443 345555555
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0015 Score=59.31 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|....... ...+. +... ....+.-++....+.++||||..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t-------~~~~--~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD-EYDPT-------IEDS--YRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC-CCCTT-------CCEE--EEEEEEETTEEEEEEEEECCCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCC-------chhe--EEEEEEECCcEEEEEEEECCCcH
Confidence 4789999999999999999998765222 11111 1111 11223345667889999999954
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=58.63 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=38.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... ..... .+..... ...+.-++-...+.++|+||..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~--------~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF-VEKYD--------PTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCSCC--------CCSEEEE-EEEEESSSCEEEEEEEEECSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC--------CCccceE-EEEEEECCEEEEEEEEECCChH
Confidence 36899999999999999999987542 11111 1111111 1122334557889999999964
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0016 Score=57.55 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=37.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ..... ...+.-++...++.++|+||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT------KADSY---RKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTT------CCEEE---EEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCC------cceEE---EEEEEECCEEEEEEEEECCCcc
Confidence 368999999999999999999876522 111111 11111 1122334556889999999964
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=63.55 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||+++|++
T Consensus 7 i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999954
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=64.76 Aligned_cols=60 Identities=28% Similarity=0.296 Sum_probs=38.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+++.++|.+|+|||||+|.|.+...... . -...++..... .+.-++ ..+.|+||||..+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~-~------~~~~t~~~~~~--~~~~~~--~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVG-N------WPGVTVEKKEG--IMEYRE--KEFLVVDLPGIYSL 63 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEE-E------CTTSSCEEEEE--EEEETT--EEEEEEECCCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccC-C------CCCeEEEeeEE--EEEECC--ceEEEEeCCCcccc
Confidence 6789999999999999999986542110 0 11122332222 222233 45999999998754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00037 Score=67.34 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHh---cCC--CCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLF---LSD--LYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~---~~~--~~G~i~ 129 (541)
++|+||||||||||+++|+ +.. +.|++.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~ 62 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFL 62 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence 4999999999999999996 543 345554
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0015 Score=59.13 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|....... ...+ +..... ...+.-++....+.++|+||..+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~--------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVD-SYDP--------TIENTF-TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-CCCT--------TCCEEE-EEEEEETTEEEEEEEEECCCCCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCC--------CccccE-EEEEEECCEEEEEEEEeCCCchh
Confidence 5789999999999999999998655221 1111 111111 22233456678899999999654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00033 Score=65.58 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|+.
T Consensus 23 vl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 8999999999999999954
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00024 Score=72.69 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=39.8
Q ss_pred EEEcCCCCCHHHHHHHHhcC----CCC----CC-eeecccCCccceecccccccccccccEEEEeCCCccccccccccCC
Q psy91 103 MVVGESGLGKSTLVNSLFLS----DLY----GD-RKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQ 173 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~----~~~----G~-i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~q 173 (541)
+|+||||||||||++.|++. +.. |. |+ ++++ .. ....++++++|...+++.
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~---i~~e----~~------~~~~~i~~i~q~~~~~~~------- 194 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW---IDTE----NT------FRPERIREIAQNRGLDPD------- 194 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEE---EESS----SC------CCHHHHHHHHHTTTCCHH-------
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEE---EeCC----CC------CCHHHHHHHHHHcCCCHH-------
Confidence 99999999999999999432 233 44 55 4444 11 112346677777665532
Q ss_pred Ccccceeccc
Q psy91 174 TDRDYIGFAT 183 (541)
Q Consensus 174 tv~e~l~~~~ 183 (541)
++.+|+.+..
T Consensus 195 ~v~~ni~~~~ 204 (349)
T 1pzn_A 195 EVLKHIYVAR 204 (349)
T ss_dssp HHGGGEEEEE
T ss_pred HHhhCEEEEe
Confidence 6788888763
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00032 Score=65.31 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
++|+||||||||||+++|++.
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 389999999999999999554
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00077 Score=60.74 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=36.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec-CeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER-GVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~-gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ....+ ++........+.-+ +....+.++|+||.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKA--------TIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC-----------CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCC--------ccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 3578999999999999999999876522 11111 11111111122222 44678999999994
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=57.44 Aligned_cols=59 Identities=27% Similarity=0.439 Sum_probs=38.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
++++++|.+|+|||||+|.|....... ...+.. .... ...+.-++....+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~------~~~~---~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTI------EDSY---RKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTC------CEEE---EEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCcc------ceEE---EEEEEECCEEEEEEEEECCCch
Confidence 679999999999999999998664221 111110 1111 1223335557889999999964
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00033 Score=65.91 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|+||||||||||++.|+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 489999999999999999654
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00096 Score=62.03 Aligned_cols=61 Identities=30% Similarity=0.550 Sum_probs=38.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... ... ...++.+......+.-++....+.|+|+||.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SER--------QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-------------------CEEEEEEEETTEEEEEEEECCTTC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCC--------CCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 357899999999999999999986552 111 1223332222233344566789999999995
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00026 Score=64.29 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
++|+||||||||||+++|++.. |.+. +++.
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~--g~~~---i~~d 40 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL--HAAF---LDGD 40 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH--TCEE---EEGG
T ss_pred EEEEcCCCCCHHHHHHHHHHhh--CcEE---EeCc
Confidence 4899999999999999995432 5666 5554
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0009 Score=59.97 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=35.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+++.++|.+|+|||||+|.|........ .. ..+ .+. ... .+.-++...++.++|+||...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~---~~~--~~~--~~~--~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-HE---QLG--EDV--YER--TLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CC---CSS--SSE--EEE--EEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc-cC---ccc--cce--eEE--EEEECCEEEEEEEEecCCCCc
Confidence 47899999999999999999987652211 11 111 111 111 222345578899999999754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=67.85 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=36.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.++++++|.+|+|||||+|+|.......... ....|.... .+.+ ...+.++||||+.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~------~~g~T~~~~--~~~~-----~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGD------RPGITTSQQ--WVKV-----GKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------------C--CEEE-----TTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCC------CCCeeeeeE--EEEe-----CCCEEEEECcCcCCCC
Confidence 4789999999999999999998765221111 111111111 1111 3478999999998753
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00053 Score=62.51 Aligned_cols=56 Identities=32% Similarity=0.459 Sum_probs=36.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
++++++|.+|+|||||+|.|..... .....+ ++.+....+.+ . .+.++||||+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~--------~~t~~~~~~~~-----~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRP--------GVTRKIIEIEW-----K-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSST--------TCTTSCEEEEE-----T-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCC--------CccceeEEEec-----C-CEEEEECCCcccc
Confidence 5789999999999999999987652 211111 11111112221 1 7899999998764
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0009 Score=60.60 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||++.|..... .....+... ... ...+.-++....+.++||||..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~------~~~---~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVF------DNY---SANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSC------CEE---EEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCccc------cee---EEEEEECCEEEEEEEEECCCCH
Confidence 46899999999999999999986552 222211110 011 1122335667889999999973
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0031 Score=56.35 Aligned_cols=59 Identities=34% Similarity=0.571 Sum_probs=35.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.+.++|.+|+|||||+|.|........ ..+ ++.+......+.-++ ..+.++||||.-+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~--------~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIG-NWP--------GVTVEKKEGEFEYNG--EKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC--------------CCCCCEEEEEETT--EEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeecc-CCC--------CcceeeeEEEEEECC--cEEEEEECCCccc
Confidence 5789999999999999999986542111 111 111111111122223 5789999999754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=62.19 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=39.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe----------eeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV----------KLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv----------~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... .. ....++.+......+.-++. ..++.|+||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NP--------KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CC--------EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-Cc--------CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 457899999999999999999986542 11 11223333322222222222 678999999993
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00034 Score=71.71 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=27.7
Q ss_pred ecccccccc---cceeecceEEE---EEEcCCCCCHHHHHHHHhcC
Q psy91 83 ATLPEQVHR---KSVKKGFDFTL---MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 83 ~~l~~~~~~---~~iL~~isl~i---aIiGpSGsGKSTLL~~L~~~ 122 (541)
+++...|+. ..+|+++++.+ +|+|++||||||||+.|.+.
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344555543 35788888877 99999999999999999763
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00013 Score=73.71 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=25.0
Q ss_pred ecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 96 KGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 96 ~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
.+++|.+ +|+|||||||||++..|++ .+..|.|.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4565532 9999999999999999943 23456666
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=61.91 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=26.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .. ....++.+......+.-+|....+.|+|+||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~--------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NS--------TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC-------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CC--------CCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 57899999999999999999875431 11 111233333322333345667899999999964
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0023 Score=57.82 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=39.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ..... ...+.-++....+.|+|+||..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT------KADSY---RKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTT------CCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCc------cceEE---EEEEEECCEEEEEEEEECCCCc
Confidence 478999999999999999999876522 111111 11111 1222335556789999999964
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=6.9e-05 Score=66.98 Aligned_cols=78 Identities=5% Similarity=0.040 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCcceEEe------eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc
Q psy91 291 RKVPNVNDRQGKTTTIE------KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT 364 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~------~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt 364 (541)
+.+..+|+|++|++.|+ ++++. +++++|+|||..|.+..... .+.+.+.+..+.+++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~t 115 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAG------EISLLILDEPTPYLDEERRR-----------KLITIMERYLKKIPQ 115 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS------SCSEEEEESCSCTTCHHHHH-----------HHHHHHHHTGGGSSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcC------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHccCCE
Confidence 45667999999999876 55555 79999999998876655443 556666665555788
Q ss_pred eeeccccchhhhhcccceeEEEc
Q psy91 365 TTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++.+|+.++. .+..++.++.
T Consensus 116 iiivsH~~~~~--~~~d~ii~l~ 136 (148)
T 1f2t_B 116 VILVSHDEELK--DAADHVIRIS 136 (148)
T ss_dssp EEEEESCGGGG--GGCSEEEEEE
T ss_pred EEEEEChHHHH--HhCCEEEEEE
Confidence 99999997543 4566666653
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=62.40 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=39.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|........ .. .++.+......+.-++....+.|+||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SK--------STIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CC--------CcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 357899999999999999999987652211 11 112211222223335556899999999954
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0004 Score=71.22 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+|||||||||||++|++
T Consensus 126 i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 39999999999999999954
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0013 Score=60.84 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=38.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|...... .... .++.... ...+.-++....+.|+||||..+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~--------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYD--------PTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCC--------CCSEEEE-EEEEC----CEEEEEEEECCCCT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCC--------CccceEE-EEEEEECCEEEEEEEEECCCccc
Confidence 578999999999999999999876532 1111 1121111 12222334468899999999643
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0027 Score=58.54 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=39.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ..... ...+.-++....+.|+|+||..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT------KADSY---RKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTT------CCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc------cceEE---EEEEEECCEEEEEEEEcCCChh
Confidence 478999999999999999999876522 111111 11111 1222335557889999999964
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.001 Score=63.10 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=37.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.++++|.+|+|||||+|.|....... ... .+..+...+.. .. -+ ...+.|+||||..+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~-~~~----~~~t~~~~~~~--~~--~~--~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDV-QSY----SFTTKNLYVGH--FD--HK--LNKYQIIDTPGLLDR 89 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEE-ECC---------CEEEEE--EE--ET--TEEEEEEECTTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-CCC----CCcceeeeeee--ee--cC--CCeEEEEECCCCcCc
Confidence 4689999999999999999998765321 110 01111121111 11 11 367999999999764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.002 Score=62.77 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=38.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
++.++|.+|+|||||+|.|.+....... -...++...... +.-+| ..+.|+||||..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~-------~pg~Tv~~~~~~--~~~~~--~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGN-------WPGVTVEKKTGE--FLLGE--HLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEE-------CTTSSSEEEEEE--EEETT--EEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccC-------CCCceEEEEEEE--EEECC--eEEEEEeCCCccccc
Confidence 5889999999999999999865421111 112233322222 22233 389999999986543
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0026 Score=57.97 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=38.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ....+ ...+.-++....+.|+|+||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPT------IEDSY---RKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTT------CCEEE---EEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCc------cceEE---EEEEEECCEEEEEEEEECCChH
Confidence 478999999999999999999866522 111111 11111 1123335557889999999954
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=62.02 Aligned_cols=61 Identities=25% Similarity=0.442 Sum_probs=40.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.|.++++|.+|+|||+|++++.... +.... ..|+.+......+.-++...+|.|+||+|.-
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~--------~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTY--------QATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC------------------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCc--------CCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 3789999999999999999987654 22221 2344444444445566778999999999853
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00013 Score=79.26 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=39.1
Q ss_pred ceeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
.++++++...|+...++.++++.+ +|+||||||||||+++|++ .+..|.|.
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 467788888887777777777643 9999999999999999933 34445555
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00081 Score=62.20 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=20.6
Q ss_pred cceeeEeccCCcchhHHHHhhhccc--ccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe--eeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV--KLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~--~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv--~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|... ... .. ...++.+......+.-++. ...+.|+||||.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~--------~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-KD--------YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEC-------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-CC--------CCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 3578999999999999999999866 311 11 1122222222222333444 788999999997
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0025 Score=58.53 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|..... ..... .++..... ..+.-++....+.|+||||.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~--------~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYV--------PTVFENFS-HVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCC--------CCSEEEEE-EEEEETTEEEEEEEEEECCS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccC--------CeeeeeeE-EEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999987652 21111 12221111 22344566788999999984
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00094 Score=61.36 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .....+. +.... ...+.-++....+.|+||||..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t--------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYIPT--------IEDTY-RQVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCC-CCTTSCC--------CCEEE-EEEEEETTEEEEEEEEECCGGG
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCC-CCcccCc--------cccce-eEEEEECCEEEEEEEEeCCChH
Confidence 57899999999999999999987552 2211111 11111 1112334557789999999953
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=62.32 Aligned_cols=63 Identities=19% Similarity=0.434 Sum_probs=39.7
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEe-eecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI-EERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i-~e~gv~~~L~I~DePg~G 331 (541)
...++++++|.+|+|||||+|.|...... ... ..+.........+ ..++....+.|+||||..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-KNY--------NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEE--------ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 45689999999999999999999865421 110 1111122222222 234445889999999954
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00056 Score=72.16 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.++|+|+||||||||++.|++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 56699999999999999999654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00023 Score=81.35 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=66.7
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee--EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR--LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~--L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+..+..++.+..+|+|++|++.|++++.. ++. ++|+|||+.|.+..... .+.+.|.
T Consensus 448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~------~p~~~lllLDEPT~gLD~~~~~-----------~l~~~L~ 510 (916)
T 3pih_A 448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGS------GLTGVIYVLDEPTIGLHPRDTE-----------RLIKTLK 510 (916)
T ss_dssp HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHT------TCCSCEEEEECTTTTCCGGGHH-----------HHHHHHH
T ss_pred HHHcCCccccccCCcccCCHHHHHHHHHHHHHhh------CCCCcEEEEECCccCCCHHHHH-----------HHHHHHH
Confidence 3334444434567788999999999999999876 565 99999998887665543 6667777
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+..+.+.|+++++|++++.. ...++.++
T Consensus 511 ~L~~~G~TvivVtHd~~~~~--~aD~ii~l 538 (916)
T 3pih_A 511 KLRDLGNTVIVVEHDEEVIR--NADHIIDI 538 (916)
T ss_dssp HTTTTTCEEEEECCCHHHHH--TCSEEEEE
T ss_pred HHHhcCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 77777899999999987653 36666666
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0038 Score=57.41 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=41.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-.+++.++|.+|+|||||+|.|...... ....+.. .... ...+.-++....+.++|+||..+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTL------ESTY---RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTC------CEEE---EEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCC------CceE---EEEEEECCEEEEEEEEECCCCCc
Confidence 4578999999999999999999876532 1111111 1111 11223345578899999999875
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0018 Score=57.74 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=37.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... . .. .++.+....+.+ + ..++.++||||..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~~--------~t~~~~~~~~~~--~--~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-T-TI--------PTIGFNVETVTY--K--NLKFQVWDLGGLT 62 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-C-CC--------CCSSEEEEEEEE--T--TEEEEEEEECCCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-C-cC--------CcCccceEEEEE--C--CEEEEEEECCCCh
Confidence 368999999999999999999876532 1 11 122222222222 1 5789999999964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00044 Score=70.17 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=56.3
Q ss_pred eeEeccCCcchhHHHHhhhcccccCC----------CCCCC---C---C-C-CCCCcceEEeeeEEEeeecCeeeeEEEE
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYG----------DRKVP---N---V-N-DRQGKTTTIEKKSMDIEERGVKLRLTVV 325 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~----------~~~~~---~---l-s-~g~~q~v~I~~~~~~i~e~gv~~~L~I~ 325 (541)
.+.++|++|+||||+++.|...--.. ....+ . + . +|+++++.|++++.. +|+++|+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~------~p~ilil 246 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRM------RPDRIIL 246 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTS------CCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhh------CCCEEEE
Confidence 57899999999999999986431000 00000 0 0 0 567778888887766 8999999
Q ss_pred cCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 326 DTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 326 DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
|||... ...++|......+.++++.+|..+..
T Consensus 247 dE~~~~------------------e~~~~l~~~~~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 247 GELRSS------------------EAYDFYNVLCSGHKGTLTTLHAGSSE 278 (330)
T ss_dssp CCCCST------------------HHHHHHHHHHTTCCCEEEEEECSSHH
T ss_pred cCCChH------------------HHHHHHHHHhcCCCEEEEEEcccHHH
Confidence 999651 12334444433334677888887643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00078 Score=60.64 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=38.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec-CeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER-GVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~-gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .... ..++.+......+.-+ +...++.++|+||.-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF-GKQY--------KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT-THHH--------HHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC-CCCC--------CCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 47899999999999999999987652 1110 0111111111122222 246899999999954
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0021 Score=59.46 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||++.|....... ... .++.+......+.-+|....+.++|+||.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~--------~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 64 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESK--------STIGVEFATRSIQVDGKTIKAQIWDTAGQ 64 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC------------CCCSCEEEEEEEEETTEEEEEEEEECSSG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCC--------CccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 4688999999999999999998764211 111 11111222223334566788999999985
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=57.81 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.+.++|.+|+|||||+|.|....
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998765
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0016 Score=57.44 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+++++|.+|+|||||+|.|.......... .. ..........+.-++ .++.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~------~~--~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD------VP--GVTRDLKEGVVETDR--GRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------------CCEEEEEEETT--EEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC------CC--CceecceEEEEEeCC--ceEEEEECCCCCCc
Confidence 468999999999999999998654211110 00 111111222222233 37889999998753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0005 Score=64.31 Aligned_cols=28 Identities=32% Similarity=0.179 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC--CCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFLS--DLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~--~~~G~i~ 129 (541)
++|+|+||||||||+++|.+. +..|.+.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 499999999999999999442 2344554
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00069 Score=70.23 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..++|+|+||||||||+|+|.+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4569999999999999999965
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00056 Score=63.37 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=40.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..+++.++|.+|+|||||+|.|........ ...+.........+.-++....+.|+||||.-
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCH---------HHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC---------cCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 457899999999999999999886442110 01122222222333345667899999999953
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00026 Score=73.03 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=28.9
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
.+|+++++.+ +|+||||||||||+++|++. ..|.+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-~~g~~~ 198 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-CGGKAL 198 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-HCCEEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-cCCcEE
Confidence 5788888876 99999999999999999753 345444
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=58.59 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=38.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|........... .++.+....+.+ + ..++.|+||||..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--------~t~~~~~~~~~~--~--~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--------PTIGFSIEKFKS--S--SLSFTVFDMSGQG 78 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--------CCSSEEEEEEEC--S--SCEEEEEEECCST
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--------CccceeEEEEEE--C--CEEEEEEECCCCH
Confidence 47899999999999999999987652222111 122222222222 2 3689999999954
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0028 Score=58.39 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=41.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+.+.++|.+|+|||||++.|..... .... ..++.+......+.-+|....+.++|+||.-.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~--------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLES--------KSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSC--------CCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCC--------CCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 347889999999999999999987542 1111 11222222233344466678888999998643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00033 Score=72.95 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=16.0
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+||||||||||++.|
T Consensus 182 ~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 182 ELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHH
Confidence 99999999999999965
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45699999999999999999653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00077 Score=63.81 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----CCCCCCee
Q psy91 101 TLMVVGESGLGKSTLVNSLFL-----SDLYGDRK 129 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~-----~~~~G~i~ 129 (541)
.|+|+|||||||||+.++|++ .++.|.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence 469999999999999999943 23455555
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00059 Score=62.70 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=39.5
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg 329 (541)
...|+++++|.+|+|||||+|.|........ . ..+..+......+.-++....+.|+|+||
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-F--------VSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC-E--------EEEETTTEEEEEEEETTTTEEEEEECHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-c--------CCCeeeEEEEEEEEECCEEEEEEEEeCCC
Confidence 3568999999999999999999987552111 1 11111122222233344567899999998
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=59.59 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=39.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... .....+.. + .. +. ..+.-++....+.|+|+||.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~--~--~~--~~---~~~~~~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV--F--EN--YI---ADIEVDGKQVELALWDTAGQ 83 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSS--C--CC--CE---EEEEETTEEEEEEEECCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcc--c--ce--EE---EEEEECCEEEEEEEEECCCc
Confidence 467899999999999999999987653 22111111 1 11 11 11233555789999999995
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0018 Score=58.90 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=37.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.+.++|.+|+|||||+|.|.......... ...++..... .+.-++ ..+.++||||..+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~-------~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNW-------PGVTVEKKEG--EFEYNG--EKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEEC-------TTSCCEEEEE--EEEETT--EEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCC-------CCeeccceEE--EEEeCC--cEEEEEECCCcCcc
Confidence 3678999999999999999998653211111 1112222222 222233 67899999997653
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.003 Score=57.36 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=37.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.+++.++|.+|+|||||+|+|.... .. ... .++.+....+.+ + ..++.++||||.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~-~~~--------~t~~~~~~~~~~--~--~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD-TIS--------PTLGFNIKTLEH--R--GFKLNIWDVGGQ 72 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS-SCC--------CCSSEEEEEEEE--T--TEEEEEEEECCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC-ccc--------ccCccceEEEEE--C--CEEEEEEECCCC
Confidence 35789999999999999999998655 11 111 122222222222 2 478999999997
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0022 Score=59.71 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=39.1
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|...... ....+. . ...+. ..+.-++....+.|+||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t----~--~~~~~---~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPT----V--FENYV---ADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------------CCEEE---EEEEETTEEEEEEEEECTTCT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCc----c--cceEE---EEEEECCEEEEEEEEECCCcH
Confidence 3578999999999999999999876522 111111 0 11111 123345667899999999964
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0036 Score=57.29 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=38.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+++.++|.+|+|||||+|.|..... .....+ ++.... ...+.-++....+.|+||||..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~--------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDP--------NLEDTY-SSEETVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCT--------TCCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCC--------Ccccee-eEEEEECCEEEEEEEEECCCCC
Confidence 357899999999999999999987652 221111 111111 1122335567889999999964
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0035 Score=57.00 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=39.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..+.++++|.+|+|||||+|.|..... .....+ ++.... ...+.-++....+.++|+||.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~--------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP--------TVFENY-TASFEIDTQRIELSLWDTSGS 65 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC--------CSEEEE-EEEEECSSCEEEEEEEEECCS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC--------ccceeE-EEEEEECCEEEEEEEEECCCC
Confidence 457899999999999999999987652 211111 111111 122333555788999999995
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.001 Score=62.38 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||+|.+|
T Consensus 27 ~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 89999999999999999
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0023 Score=69.65 Aligned_cols=67 Identities=25% Similarity=0.175 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
...++|+|.+|+|||||+|.|++.... +...+.....|..+......+. .+....+.++||||+++.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~----~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKG----FSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSC----SCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCc----cccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCcc
Confidence 356899999999999999999986521 1111111122222221111110 122467999999999975
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00042 Score=65.51 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=17.6
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|++
T Consensus 27 ~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999953
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0033 Score=58.69 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=40.1
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
...++++++|.+|+|||||+|.|..... ..... .++.... ...+.-++....+.|+||||.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 86 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV--------PTVFENY-TASFEIDTQRIELSLWDTSGS 86 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC--------CCSEEEE-EEEEESSSSEEEEEEEEECCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC--------CccceeE-EEEEEECCEEEEEEEEeCCCc
Confidence 3568999999999999999999987652 21111 1221111 122333555788999999995
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0037 Score=57.11 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=40.6
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+.+.++|.+|+|||||+|.|...... ....+ +.. .....+.-+|....+.|+||||.-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~--------t~~--~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP--------EGG--RFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT--------TCE--EEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC--------Ccc--eEEEEEEECCEEEEEEEEECCCCh
Confidence 4578999999999999999998876532 21111 111 111233445667889999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=59.60 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=32.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.++++++|.+|+|||||+|.|..... .....+. +... ....+.-++....+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t--------~~~~-~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPT--------VFDN-FSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------------CBCCCC-------CEEECCCC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCe--------eeee-EEEEEEECCEEEEEEEEECCCCh
Confidence 357899999999999999999986552 2211111 1100 01112224456788899999964
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0028 Score=56.15 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=34.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|++.++|.+|+|||||+|.|........ +.... ... ...+.-++....+.++|+||..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~------~~~~~--~~~---~~~~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPE------AEAAG--HTY---DRSIVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------------CEE---EEEEEETTEEEEEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCC------CCccc--cce---EEEEEECCEEEEEEEEECCCCc
Confidence 6799999999999999999975442111 00001 111 1222345667899999999864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00078 Score=61.52 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+||||||||||+++|++
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999954
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0023 Score=56.57 Aligned_cols=55 Identities=24% Similarity=0.467 Sum_probs=35.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
++++++|.+|+|||||+|.|...... . ..+ |+.+....+. -+ ..++.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~-~~~--------t~~~~~~~~~--~~--~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-TIP--------TIGFNVETVE--YK--NISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-C-CCC--------CSSCCEEEEE--CS--SCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-c-ccC--------cCceeEEEEE--EC--CEEEEEEEcCCCh
Confidence 47899999999999999999876532 1 111 1111111121 12 4789999999973
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0028 Score=59.46 Aligned_cols=60 Identities=23% Similarity=0.437 Sum_probs=34.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .....+ ++. ......+.-++....+.|+||||..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~--------t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTP--------TVF-ERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CC--------CCC-EEEEEEEEETTEEEEEEEEEC----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCC--------ccc-eeEEEEEEECCEEEEEEEEECCCch
Confidence 57899999999999999999986552 111111 110 1112223345667899999999954
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00073 Score=60.21 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=20.9
Q ss_pred eecceEEE-EEEcCCCCCHHHHHHHHhc
Q psy91 95 KKGFDFTL-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 95 L~~isl~i-aIiGpSGsGKSTLL~~L~~ 121 (541)
|+++.... +|+||||||||||+++|++
T Consensus 31 l~~~~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 31 LRHKHGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCCCCCSEEEEESSSTTTTCHHHHHHHH
T ss_pred HHhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34434444 9999999999999999944
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0021 Score=62.66 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+++.++|.+|+|||||+|.|.+........ ...++...... +..+ ...+.|+||||....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~-------pg~tv~~~~~~--~~~~--~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANW-------PGVTVEKKEGV--FTYK--GYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEEC-------TTSCCEEEEEE--EEET--TEEEEEEECCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC-------CCceEEEEEEE--EEEC--CeEEEEEECCCcCcc
Confidence 3689999999999999999998755221111 12233322222 2222 368999999998654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0032 Score=58.51 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=38.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.+++.++|.+|+|||||++.|....+... ..+ ++. ......+.-++....+.|+||||.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~--------t~~-~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIP--------TVF-DNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCC--------CSE-EEEEEEEECC-CEEEEEEEEECCS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCC--------eec-ceeEEEEEECCEEEEEEEEECCCc
Confidence 357899999999999999999986553221 111 111 112223334566788999999997
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00074 Score=69.33 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCceeeecccccccc-cceee--------------cceEEE------EEEcCCCCCHHHHHHHHh
Q psy91 77 RDYIGFATLPEQVHR-KSVKK--------------GFDFTL------MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-~~iL~--------------~isl~i------aIiGpSGsGKSTLL~~L~ 120 (541)
.+.+.|+||++.|+. +.+|+ |+.+.+ +|+||||||||||++.|+
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 457899999999975 45788 677777 999999999999999883
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=60.07 Aligned_cols=23 Identities=43% Similarity=0.804 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=61.77 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=38.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|...... ... ..+.........+.-++....+.|+||||.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFE-KKY--------VATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHT-CEE--------ETTTTEEEEEEEEEETTEEEEEEEEEECSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCC--------CCccceeEEEEEEEECCEEEEEEEEeCCCh
Confidence 4578999999999999999996544311 111 011112222222333455788999999994
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00024 Score=72.39 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=32.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
++.+++.+.|+...+++++++.+ +|+|++|||||||++.|++
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44556666777777777776533 9999999999999999954
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0033 Score=56.57 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.+.++|.+|+|||||+|.|...... . ..+.. + ... ...+.-+|...++.|+||||.-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~-~-~~~t~--~----~~~---~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ-V-LEKTE--S----EQY---KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC-C-CSSCS--S----SEE---EEEEEETTEEEEEEEEECSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-C-cCCCc--c----eeE---EEEEEECCEEEEEEEEECCCCc
Confidence 478999999999999999999876532 2 11111 1 111 1122335667889999999964
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=61.83 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+||+||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 359999999999999999965
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0049 Score=56.76 Aligned_cols=61 Identities=26% Similarity=0.410 Sum_probs=37.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.++++++|.+|+|||||+|.|.... +.....+.. ...+ ...+.-++....+.|+||||.-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~------~~~~---~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTA------FDNF---SAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCS------SEEE---EEEEEETTEEEEEEEEECCCST
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcc------ccee---EEEEEECCEEEEEEEEECCCCH
Confidence 45789999999999999999998765 222111111 1111 1223445667889999999974
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0028 Score=58.60 Aligned_cols=63 Identities=30% Similarity=0.314 Sum_probs=38.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-.+.++++|.+|+|||||+|.|.......... +. .+...... .+.-++....+.++|+||...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~------~~~~~~~~--~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE-PE------NPEDTYER--RIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT-TT------SCTTEEEE--EEEETTEEEEEEEECCCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCC-CC------cccceEEE--EEEECCEEEEEEEEecCCCcc
Confidence 35789999999999999999997533111100 00 01111111 223356678899999998753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0028 Score=58.08 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=40.6
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+++.++|.+|+|||||+|.|..... .....+.. + .. + ...+.-++....+.|+|+||..+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~--~--~~--~---~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTV--F--DH--Y---AVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSS--C--CC--E---EEEEESSSCEEEEEEECCCCSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcc--c--ce--e---EEEEEECCEEEEEEEEECCCCcc
Confidence 457899999999999999999987642 22221111 1 11 1 11233355578899999999753
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0011 Score=67.14 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=22.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc---CCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFL---SDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~---~~~~G~i~~~~~~G~ 136 (541)
+.|.||||+|||||+++|++ .+..|.+. ++|.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~---~~~~ 73 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK---IDVR 73 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE---ecce
Confidence 58999999999999999943 56678888 6665
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0019 Score=63.60 Aligned_cols=62 Identities=26% Similarity=0.293 Sum_probs=39.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+++.++|.+|+|||||+|.|.+....... -...++...... ++-++ ..+.++||||..+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~-------~~g~t~~~~~~~--~~~~~--~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGN-------WAGVTVERKEGQ--FSTTD--HQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEE-------CTTSSSEEEEEE--EECSS--CEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCC-------CCCeeEEEEEEE--EEeCC--CceEEEECcCCCccc
Confidence 368999999999999999999876421110 111223322222 22222 468899999987643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=58.99 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999965
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0032 Score=57.53 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=36.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|...... .... .++...... +..+ ...+.|+|+||.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~--------~t~~~~~~~--~~~~--~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-EDMI--------PTVGFNMRK--ITKG--NVTIKLWDIGGQ 77 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC--------CCCSEEEEE--EEET--TEEEEEEEECCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-CccC--------CCCceeEEE--EEeC--CEEEEEEECCCC
Confidence 478999999999999999999876522 1111 122222221 2222 577899999995
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=61.54 Aligned_cols=20 Identities=45% Similarity=0.801 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||.+.|+.
T Consensus 15 i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999943
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0042 Score=56.08 Aligned_cols=61 Identities=25% Similarity=0.492 Sum_probs=36.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.+.++|.+|+|||||+|.|....... .... ...+.......+. -+| ..+.++||||..+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~---~~~t~~~~~~~~~--~~~--~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI---VTDI---AGTTRDVLREHIH--IDG--MPLHIIDTAGLREA 65 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC---CCSS---TTCCCSCEEEEEE--ETT--EEEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce---eeCC---CCceeceeeEEEE--ECC--eEEEEEECCCcccc
Confidence 468899999999999999998654211 0111 1111112222222 233 34789999998653
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=60.84 Aligned_cols=19 Identities=53% Similarity=0.847 Sum_probs=17.1
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|..
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6999999999999999943
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0045 Score=56.72 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=37.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++++|.+|+|||||+|.|...........+ ++.+....+ + +-...+.|+||||.-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--------t~~~~~~~~--~--~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--------TVGYNVETF--E--KGRVAFTVFDMGGAK 74 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC--------CSSEEEEEE--E--ETTEEEEEEEECCSG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc--------ccceeEEEE--E--eCCEEEEEEECCCCH
Confidence 467999999999999999999876632211111 222222222 1 226789999999973
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00071 Score=74.35 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=31.0
Q ss_pred cccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 84 TLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 84 ~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
+++.-||...+++.+++.+ +|+||||||||||+++|++
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3444567777888888776 9999999999999999944
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0016 Score=66.22 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=0.0
Q ss_pred eecceEEE-----EEEcCCCCCHHHHHHHH
Q psy91 95 KKGFDFTL-----MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 95 L~~isl~i-----aIiGpSGsGKSTLL~~L 119 (541)
..+..+.+ +|+|||||||||||.+|
T Consensus 14 ~~~~~i~f~~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEEEECCSEEEEEECCTTSSHHHHHHHH
T ss_pred ccCeEEcCCCCeEEEECCCCCCHHHHHHHH
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00077 Score=72.62 Aligned_cols=77 Identities=8% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CCCCCC-CCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee
Q psy91 291 RKVPNV-NDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI 367 (541)
Q Consensus 291 ~~~~~l-s~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i 367 (541)
..+..+ |+|++|++.|+++++. ++ +++|+|||..|-+..... .+.+.|.+..+ +.++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~------~~~~~~lilDEp~~gld~~~~~-----------~i~~~l~~~~~-~~~vi~ 453 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVL------GADTPSVVFDEVDAGIGGAAAI-----------AVAEQLSRLAD-TRQVLV 453 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHH------CCCSSEEEECSCSSSCCTHHHH-----------HHHHHHHHHHH-HSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHh------CCCCCEEEEeCCcCCCCHHHHH-----------HHHHHHHHHhC-CCEEEE
Confidence 345667 9999999999998877 78 999999998886655443 55666666655 788999
Q ss_pred ccccchhhhhcccceeEEEc
Q psy91 368 EKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 368 ~~~~~di~~~~l~~rvnvIp 387 (541)
.+|+.++.. .+.++.++.
T Consensus 454 itH~~~~~~--~~d~~~~~~ 471 (517)
T 4ad8_A 454 VTHLAQIAA--RAHHHYKVE 471 (517)
T ss_dssp ECCCHHHHH--HSSEEEEEE
T ss_pred EecCHHHHH--hCCEEEEEe
Confidence 999988664 366777763
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0014 Score=61.00 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|+|||||||+.+.|++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 58999999999999999966
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0054 Score=62.65 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.1
Q ss_pred eeEeccCCcchhHHHHhhhcccccC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLY 288 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~ 288 (541)
.+.|+|.+|+||||++|.|.+.+++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcC
Confidence 6889999999999999999987643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0025 Score=58.17 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=42.2
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC---CCCCCcceEEeeeEEEe-eecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV---NDRQGKTTTIEKKSMDI-EERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l---s~g~~q~v~I~~~~~~i-~e~gv~~~L~I~DePg~G 331 (541)
...+++.++|.+|+|||||++.|.... .....+.. ......++.+......+ .-++...++.|+||||.-
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV--PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS--CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc--cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 346899999999999999998776432 11110000 01122344444333333 334557899999999964
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=58.09 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
..|+|+|++|||||||++.|.+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999999654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=61.03 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.+.|+|+|++|+|||||++.|++..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4677999999999999999996643
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0035 Score=58.39 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=39.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+.++++|.+|+|||||++.|..... .....+.. + ... ...+.-++....+.|+||||.-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~--~--~~~-----~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTV--F--DNF-----SANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSS--C--CCE-----EEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCcc--c--eeE-----EEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999986552 22221111 1 111 1122334557899999999974
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0063 Score=57.06 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=38.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.+.++++|.+|+|||||++.|...... .... .++.... ...+.-++....+.|+||||.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYV--------PTVFENY-TACLETEEQRVELSLWDTSGS 85 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCC--------CCSEEEE-EEEEEC--CEEEEEEEEECCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcC--------CeeeeeE-EEEEEECCEEEEEEEEECCCC
Confidence 3578999999999999999999876522 2111 1222221 122333455788999999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.00067 Score=77.30 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=67.8
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee--eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK--LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~--~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+..+..++.+..+|+|++|++.|++++.. + +.++|+|||+.|.+..... .+.+.|.
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~------~~~~~llILDEPTagLdp~~~~-----------~L~~~L~ 550 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS------RLTGVLYVLDEPSIGLHQRDND-----------RLIATLK 550 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTT------CCCSCEEEEECTTTTCCGGGHH-----------HHHHHHH
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhh------CCCCCEEEEeCcccCCCHHHHH-----------HHHHHHH
Confidence 4555555444678889999999999999999865 5 4899999998887654433 5666677
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+....+.+++++.|+++.. ....++.++
T Consensus 551 ~Lr~~G~TVIvVeHdl~~i--~~ADrIi~L 578 (972)
T 2r6f_A 551 SMRDLGNTLIVVEHDEDTM--LAADYLIDI 578 (972)
T ss_dssp HHHTTTCEEEEECCCHHHH--HSCSEEEEE
T ss_pred HHHhCCCEEEEEecCHHHH--HhCCEEEEe
Confidence 7766789999999998753 356777776
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0018 Score=60.53 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|+||||||||++.|.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999965
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=61.40 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|++
T Consensus 28 ~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 8999999999999999954
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0038 Score=56.89 Aligned_cols=60 Identities=35% Similarity=0.438 Sum_probs=32.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccc-cCCCCCCCCCCCCCCcceEEeeeEEEee---ecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD-LYGDRKVPNVNDRQGKTTTIEKKSMDIE---ERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~-~~~~~~~~~ls~g~~q~v~I~~~~~~i~---e~gv~~~L~I~DePg~ 330 (541)
+.+.++|.+|+|||||+|.|.... .+. +....++.+......+. .++-...+.++||||.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~--------~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL--------GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------CSEEEEEEEC---------CEEEEEEECSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC--------CCcceeccEEeEEeeeccccCCCCceEEEEEecCCC
Confidence 678999999999999999998642 111 11112222222222211 1233678889999984
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=62.82 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=22.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
+|+||||||||||+..|++....|.++
T Consensus 34 ~i~G~~GsGKTtl~~~l~~~~~~g~~~ 60 (279)
T 1nlf_A 34 ALVSPGGAGKSMLALQLAAQIAGGPDL 60 (279)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHTCCCT
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999996544456554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.001 Score=66.38 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=29.7
Q ss_pred eeeecccccccccceeecceE---EE-EEEcCCCCCHHHHHHHHhc
Q psy91 80 IGFATLPEQVHRKSVKKGFDF---TL-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl---~i-aIiGpSGsGKSTLL~~L~~ 121 (541)
+.++++++.|+... +++++ .+ +++|+|||||||++..|++
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45667777776543 45554 34 9999999999999999944
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.002 Score=59.22 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=17.8
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHHhc
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L~~ 121 (541)
+++++++.. +|+|++|||||||++.+.+
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 566666544 9999999999999999954
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0021 Score=59.81 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++|||||||.+.|+.
T Consensus 21 I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999943
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0022 Score=57.56 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|+
T Consensus 4 i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.004 Score=62.03 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.1
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
..+.|+|.+|+|||||+|.|.+..+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3689999999999999999988764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0023 Score=58.57 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
++|+|+||||||||++.|+
T Consensus 9 i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 3899999999999999994
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=63.07 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++|||||||++.|++.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4599999999999999999764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=57.41 Aligned_cols=57 Identities=23% Similarity=0.469 Sum_probs=34.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+++.++|.+|+|||||+|.|..... . ...+ ++.+....+.+ + ..++.++|+||...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~-~-~~~~--------t~~~~~~~~~~--~--~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV-V-TTKP--------TIGFNVETLSY--K--NLKLNVWDLGGQTS 74 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE-E-EECS--------STTCCEEEEEE--T--TEEEEEEEEC----
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc-C-ccCC--------cCccceEEEEE--C--CEEEEEEECCCCHh
Confidence 57899999999999999999986543 1 1111 11111111221 2 47899999999853
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0064 Score=59.96 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
+.+.|+|.+|+|||||+|.|.+..+
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 4689999999999999999988764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0045 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+.+.++|.+|+|||||+|.|.+..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0056 Score=57.02 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=37.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||++.|.... +..... ..+.... .+.+.. +-..++.|+||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~-------~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQT-------SITDSSA--IYKVNN-NRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCC-------CCSCEEE--EEECSS-TTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccC-------CcceeeE--EEEecC-CCccEEEEEECCCCh
Confidence 5789999999999999999998765 222111 1111111 122221 114789999999974
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0045 Score=56.90 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=34.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... . . ..|+.+....+. -+ ..++.|+||||..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~-~--------~~t~~~~~~~~~--~~--~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-T-T--------IPTIGFNVETVE--YK--NICFTVWDVGGQD 84 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-E-E--------EEETTEEEEEEE--ET--TEEEEEEECC---
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-c-c--------CCcCceeEEEEE--EC--CEEEEEEECCCCH
Confidence 478999999999999999999765421 1 0 112222222222 22 4789999999974
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.00083 Score=62.37 Aligned_cols=29 Identities=31% Similarity=0.276 Sum_probs=23.0
Q ss_pred ceeecce-----EEEEEEcCCCCCHHHHHHHHhc
Q psy91 93 SVKKGFD-----FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 93 ~iL~~is-----l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.++++++ +.|+|+|++|||||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3555554 3559999999999999999954
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0028 Score=57.45 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=36.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... ....+.. + +....+.+ + ..++.|+|+||..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~--~------~~~~~~~~--~--~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTI--G------SNVEEIVI--N--NTRFLMWDIGGQE 76 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCS--S------SSCEEEEE--T--TEEEEEEEESSSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcC--c------eeeEEEEE--C--CEEEEEEECCCCH
Confidence 47899999999999999999987653 1111111 1 11111111 2 3789999999973
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0043 Score=56.54 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=36.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++.++|.+|+|||||+|.|....... ..+ ++.+....+.+ + ..++.++||||..
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--------t~~~~~~~~~~--~--~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--------TVGVNLETLQY--K--NISFEVWDLGGQT 77 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--------STTCCEEEEEE--T--TEEEEEEEECCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--------CCceEEEEEEE--C--CEEEEEEECCCCH
Confidence 5789999999999999999997654221 111 11111111221 1 5789999999974
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0018 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred eeEeccCCcchhHHHHhhhccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~ 285 (541)
.+.+.|++|+||||+++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5679999999999999999954
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.007 Score=60.47 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=38.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++++|.+|+|||||+|.|+...... .+.....|+.+....+.+ .| ..++.|+|+||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------~~~~~~~Ti~~~~~~~~~--~~-~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------DTRRLGATIDVEHSHLRF--LG-NMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------GGGGCCCCCSEEEEEEEE--TT-TEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------cccCcCCccceEEEEEEe--CC-ceEEEEEECCCcH
Confidence 4678999999999999999988652110 011122344443333322 23 5789999999953
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0053 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45699999999999999999543
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0031 Score=62.66 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=24.4
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
..+|+|+.+++.++..... +++++|+|++..|.+
T Consensus 133 ~~~sgGq~~R~~~a~~~~~------~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 133 KSQFKGEGDRCPTGQKIKL------PVDIFILEGWFLGFN 166 (290)
T ss_dssp TTHHHHTCEECSSCEEEES------SCSEEEEEESSTTCC
T ss_pred cccCCccccccccccceEc------CCCEEEEeCccccCC
Confidence 3468888888877644433 589999999966543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0011 Score=76.17 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++.|+|+||||.|-+....... ...+.+++.+ +.+.++++.+|+.++..
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i-------~~~il~~l~~--~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGL-------AWAISEYIAT--KIGAFCMFATHFHELTA 789 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHH-------HHHHHHHHHH--TTCCEEEEEESCGGGGG
T ss_pred CCcEEEEeCCCCCCCHHHHHHH-------HHHHHHHHHh--cCCCEEEEEcCcHHHHH
Confidence 6899999999999775433211 0112222221 24678889999887654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0029 Score=60.52 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|.||+||||||+++.|.
T Consensus 29 i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3899999999999999993
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.005 Score=60.54 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=37.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.+.++|.+|+|||||+|.|.+........ . ..++ ......+ ++ ..++.++||||....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~----p---g~tv--~~~~~~~--~~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW----P---GVTV--ERKSGLV--KK-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS----S---CCCC--SCEEEEC--TT-CTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC----C---CCcE--EEEEEEE--ec-CCeEEEEECCCcCcc
Confidence 3678999999999999999998754221111 1 1122 2222222 12 567999999997543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0035 Score=56.06 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|+|+||+||||||+.+.|
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 489999999999999999
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0031 Score=65.99 Aligned_cols=65 Identities=32% Similarity=0.470 Sum_probs=37.3
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+-.+++.++|.+|+|||||+|.|........ +.....++ ......++-.+. .++.++||||+.+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~------~~~~gtT~--d~~~~~~~~~~~-~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIV------SDYAGTTT--DPVYKSMELHPI-GPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------C--CCCEEEEEETTT-EEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCcc------CCCCCeee--eeEEEEEEECCC-CeEEEEECcCCCcc
Confidence 3457899999999999999999987653111 11111122 222222222221 28999999999864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0024 Score=69.20 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCCCC-Ce
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDLYG-DR 128 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~~G-~i 128 (541)
++|+|+||||||||+++|++ .+..| .+
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred EEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 49999999999999999944 33444 45
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0049 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0095 Score=60.71 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
..+.|+|.+|+|||||+|+|.+..+
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999987764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0038 Score=56.50 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|||||||+.+.|+.
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999954
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0013 Score=74.36 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 355 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l 355 (541)
++..+.+..+..++.+..+|+|++|++.|++++.. ++ .++|+|||+.|.+..... .+.+.+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~------~p~~~llILDEPT~~Ld~~~~~-----------~L~~~l 424 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS------NLFGVVYVLDEPSAGLHPADTE-----------ALLSAL 424 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT------CCCSCEEEEECTTTTCCGGGHH-----------HHHHHH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh------CCCCeEEEeeCccccCCHHHHH-----------HHHHHH
Confidence 45555555544677888999999999999999876 66 599999998876655443 556666
Q ss_pred hhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 356 NDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 356 ~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
......+.++++..|++++.. ...++.++
T Consensus 425 ~~L~~~G~TVIvVeHdl~~l~--~aD~ii~l 453 (842)
T 2vf7_A 425 ENLKRGGNSLFVVEHDLDVIR--RADWLVDV 453 (842)
T ss_dssp HHHHTTTCEEEEECCCHHHHT--TCSEEEEE
T ss_pred HHHHHcCCEEEEEcCCHHHHH--hCCEEEEe
Confidence 666667889999999998543 56777766
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0096 Score=54.56 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=36.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+.+.++|.+|+|||||+|.|..... .. ..+ ++..... .+.-+| .++.++||||..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~-~~-~~~--------t~~~~~~--~~~~~~--~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRL-AT-LQP--------TWHPTSE--ELAIGN--IKFTTFDLGGHI 78 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC-CC-CCC--------CCSCEEE--EEEETT--EEEEEEECCCSG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-Cc-ccc--------CCCCCeE--EEEECC--EEEEEEECCCCH
Confidence 5789999999999999999987652 11 111 1111112 222233 788999999975
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=56.71 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+++.|..
T Consensus 8 i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999944
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0045 Score=56.35 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=35.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+++.++|.+|+|||||+|.|...... . ..+ ++.+....+.+ + ..++.++||||..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~~~--------t~~~~~~~~~~--~--~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-H-TSP--------TIGSNVEEIVI--N--NTRFLMWDIGGQE 71 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-E-EEC--------CSCSSCEEEEE--T--TEEEEEEECCC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-c-CcC--------CCccceEEEEE--C--CEEEEEEECCCCH
Confidence 3578999999999999999999865422 1 111 11111111121 2 4789999999974
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0056 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 56799999999999999999653
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0056 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456799999999999999999543
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0049 Score=60.28 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999999654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0057 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4569999999999999999954
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0057 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56799999999999999999653
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0059 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45699999999999999999653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0097 Score=59.28 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=34.8
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++|.+|+|||||+|.|.......... ....+.. +....+..+ ..++.++||||+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~------~~~tTr~--~~~gi~~~~--~~~i~~iDTpG~~ 67 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSR------KAQTTRH--RIVGIHTEG--AYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCC------CSSCCSS--CEEEEEEET--TEEEEEESSSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC------CCCccee--eEEEEEEEC--CeeEEEEECcCCC
Confidence 47899999999999999998765321111 1111110 111111222 4578999999985
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.006 Score=64.86 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=28.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++.++|.+|+|||||+|.|...+...... -...|.......+ .-+| ..+.|+||||+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~------~~gtT~d~~~~~i--~~~g--~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH------MPGTTRDYIEECF--IHDK--TMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------------CEEE--EETT--EEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC------CCCceEEEEEEEE--EECC--eEEEEEECCCCCc
Confidence 569999999999999999998764211111 1111222222222 2234 5799999999975
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0059 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.|.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46699999999999999999543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.006 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
+.|+|+|++|||||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 567999999999999999995543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.005 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 45689999999999999999643
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0062 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0061 Score=53.52 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45699999999999999999543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.006 Score=54.15 Aligned_cols=22 Identities=55% Similarity=0.789 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3569999999999999999954
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0019 Score=59.95 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=38.6
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.-.+++.++|.+|+|||||++.|..... .....+... ......+.-++....+.|+||||..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~---------~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVF---------DNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 3457899999999999999999886542 111111110 1111122234456788899999964
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0063 Score=56.84 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.3
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+-.++++++|.+|+|||||+|.|..... ... . .....++.... ...++.++||||..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~-~~~-~----~~~~~~~~~~~---------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV-RPT-V----VSQEPLSAADY---------DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC-CCB-C----CCSSCEEETTG---------GGSSCEEEECCCCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCe-e----eecCceEEEEe---------eCceEEEEECCCcH
Confidence 3457899999999999999999987652 110 0 01111221111 25789999999984
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0061 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 55699999999999999999643
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0068 Score=55.79 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=36.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEee-ecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIE-ERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~-e~gv~~~L~I~DePg~Gd 332 (541)
.+.++++|.+|+|||||++.++... .... ...+.......... .++....+.|+||||..+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM--SPNE--------TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC--CGGG--------GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC--CCcc--------eeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 5789999999999999999876532 1110 00111111111111 124468899999998643
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0058 Score=55.78 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56799999999999999999653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0071 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0072 Score=54.62 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.005 Score=62.78 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..|+|+|++|||||||++.|++
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4569999999999999999954
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0074 Score=53.34 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35679999999999999999954
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0071 Score=54.91 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=35.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||++.|..... .. . ..+..+....+. -+ ...+.++||||.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~-~~-~--------~~t~g~~~~~~~--~~--~~~l~i~Dt~G~ 70 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDI-SH-I--------TPTQGFNIKSVQ--SQ--GFKLNVWDIGGQ 70 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCC-EE-E--------EEETTEEEEEEE--ET--TEEEEEEECSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-Cc-c--------cCcCCeEEEEEE--EC--CEEEEEEECCCC
Confidence 47899999999999999999986531 10 0 011112222222 22 467889999985
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0054 Score=56.57 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 48999999999999999943
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0041 Score=56.78 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.++++|.+|+|||||+|.|....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998765
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0073 Score=54.08 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56799999999999999999554
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0069 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356799999999999999999653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0052 Score=57.45 Aligned_cols=19 Identities=37% Similarity=0.291 Sum_probs=18.0
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|++
T Consensus 24 ~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999999976
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0061 Score=62.63 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCCCCCCcceEE------eeeEEEeeecCee-eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcce
Q psy91 293 VPNVNDRQGKTTTI------EKKSMDIEERGVK-LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT 365 (541)
Q Consensus 293 ~~~ls~g~~q~v~I------~~~~~~i~e~gv~-~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~ 365 (541)
+..+|+|+++++.+ ++++.. + ++++|+|||..|-+..... .+.++|.+..+ ..++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~------~~~~~lllDEp~~~LD~~~~~-----------~l~~~l~~~~~-~~~v 339 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIG------NRVECIILDEPTVYLDENRRA-----------KLAEIFRKVKS-IPQM 339 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHS------SCCSEEEEESTTTTCCHHHHH-----------HHHHHHHHCCS-CSEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCCcCCHHHHH-----------HHHHHHHHhcc-CCeE
Confidence 45689999998854 444443 6 8999999998876654443 45555555432 3568
Q ss_pred eeccccchhhhhcccceeEEEc
Q psy91 366 TIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 366 ~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+|+.++. .+..++.++.
T Consensus 340 i~~th~~~~~--~~~d~~~~l~ 359 (371)
T 3auy_A 340 IIITHHRELE--DVADVIINVK 359 (371)
T ss_dssp EEEESCGGGG--GGCSEEEEEE
T ss_pred EEEEChHHHH--hhCCEEEEEE
Confidence 8889987643 4556666654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0058 Score=58.63 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|+|+|||||||||+.+.|+
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45999999999999999994
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0081 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35679999999999999988843
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0061 Score=55.17 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 7 i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999999943
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.014 Score=59.58 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=37.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.++++|.+|+|||||+|.|.......... ...+..+.... +..+ ...+.++||||+.+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~-------~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASY-------PFTTRGINVGQ--FEDG--YFRYQIIDTPGLLDR 227 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECC-------TTCSSCEEEEE--EEET--TEEEEEEECTTTSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCC-------CCeeeceeEEE--EEec--CceEEEEeCCCcccc
Confidence 4689999999999999999998654211100 01111121111 1112 357899999998753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0048 Score=56.55 Aligned_cols=20 Identities=20% Similarity=0.591 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 13 I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999954
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0078 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5679999999999999999954
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0085 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45679999999999999999954
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0083 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356799999999999999999553
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0067 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999999999999999654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0082 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.773 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5679999999999999999954
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0099 Score=55.43 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=23.9
Q ss_pred cceeecceEEE-----EEEcCCCCCHHHHHHHHhcC
Q psy91 92 KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 92 ~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~~ 122 (541)
...+++.-+.+ +|+||||||||||...|+..
T Consensus 22 ~~~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34566655555 99999999999999988543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.013 Score=61.47 Aligned_cols=59 Identities=32% Similarity=0.357 Sum_probs=32.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+.++|.+|+|||||+|.|....... ..+. ..++.......++-+| .++.|+||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~---v~~~-----~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAI---VEDE-----EGVTRDPVQDTVEWYG--KTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------------CCSEEEEEETT--EEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce---ecCC-----CCCccceeeEEEEECC--eEEEEEECCCccc
Confidence 47899999999999999998654210 1111 1122222222222233 3578999999875
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0061 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
-.+.|+|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999953
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0086 Score=55.35 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=32.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.+.++|.+|+|||||+|.|..... .. ..+ ++..... .+.-+| .++.++||||...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~-~~-~~~--------t~~~~~~--~~~~~~--~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRL-GQ-HVP--------TLHPTSE--ELTIAG--MTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--------C--------CCCCSCE--EEEETT--EEEEEEEECC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-Cc-cCC--------CCCceeE--EEEECC--EEEEEEECCCcHh
Confidence 5789999999999999999986542 11 111 1111111 122233 6889999999653
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0065 Score=55.38 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|.|++||||||+.+.|+
T Consensus 6 I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999994
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0075 Score=53.20 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 458999999999999999943
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0089 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35679999999999999999954
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0068 Score=55.23 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|+
T Consensus 7 I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999994
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0049 Score=59.69 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
|.|+|+|||||||+.+.|+.....+.+.
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~ 62 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVI 62 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEE
Confidence 4899999999999999995433233444
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0067 Score=57.02 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|++||||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999999954
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0077 Score=54.71 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
+.|+|+|++|||||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 467999999999999999996543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0038 Score=67.29 Aligned_cols=68 Identities=6% Similarity=-0.166 Sum_probs=44.3
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
.+..+|+|+++++.++++... +++++|+| |..|-+..... ......+.+++....+.+.++++.+|+
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~------~p~llilD-p~~~Ld~~~~~------~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDF------KPARIAID-SLSALARGVSN------NAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT------CCSEEEEE-CHHHHTSSSCH------HHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhh------CCCEEEEc-ChHHHHhhCCh------HHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 345678888899888887765 89999999 95554332110 002224445555555567888888887
Q ss_pred c
Q psy91 372 M 372 (541)
Q Consensus 372 ~ 372 (541)
.
T Consensus 417 ~ 417 (525)
T 1tf7_A 417 D 417 (525)
T ss_dssp S
T ss_pred c
Confidence 6
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0075 Score=54.64 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++|||||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4589999999999999999653
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0088 Score=54.55 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|++.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0086 Score=58.79 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45699999999999999999664
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0031 Score=58.90 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++|||||||++.|.
T Consensus 3 I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4899999999999999994
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.007 Score=59.94 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+||||||||||.+.|+.
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999954
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0071 Score=54.55 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|++||||||+.+.|..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 48999999999999999954
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0096 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467799999999999999999543
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.021 Score=56.86 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=39.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++.++|.+|+|||||++.|....+.. ...+ ++. ......+.-++....+.|+||||..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~-~~~~--------t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIP--------TVF-DNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-SCCC--------CSE-EEEEEEEEETTEEEEEEEEEECCCG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCc-ccCC--------ccc-ceeEEEEEECCEEEEEEEEeCCCch
Confidence 3689999999999999999998665322 1111 111 1112223446667889999999963
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0097 Score=53.66 Aligned_cols=23 Identities=43% Similarity=0.827 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46679999999999999999954
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0007 Score=63.53 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=79.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCC--CCcCCCCCCCCCCCCCeeEeeccc-hhhhhhhhhccceeeEeccC---Ccch
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGD--RKVPNVNEKGSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGE---SGLG 274 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~--~~i~~~~~~~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~---sg~G 274 (541)
+.++|.+|+||||+.+.+.|+.+.-. ..+.... ........+||.+|.. .+...++.+++.+...+.+. .|..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~ 101 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA-PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTL 101 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhCCceEEcccccccC-CcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCc
Confidence 55689999999999999999875110 1111100 0112245789999886 56667777776554434331 1222
Q ss_pred hHH---HHhhh----------cccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhh
Q psy91 275 KST---LVNSL----------FLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWR 341 (541)
Q Consensus 275 KsT---~in~L----------~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~ 341 (541)
+.. .+... .+.. +.+..+..+| +++. ++.+.++|+|..|.....
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~lS-----------~l~~------~p~~~~LDep~~~l~~~~----- 158 (207)
T 1znw_A 102 AQPVRAAAATGVPVLIEVDLAGARA-IKKTMPEAVT-----------VFLA------PPSWQDLQARLIGRGTET----- 158 (207)
T ss_dssp HHHHHHHHHHTCCEEEECCHHHHHH-HHHHCTTSEE-----------EEEE------CSCHHHHHHHHHTTSCSC-----
T ss_pred HHHHHHHHHcCCeEEEEeCHHHHHH-HHHhcCCcEE-----------EEEE------CCCHHHHHHHHHhcCCCC-----
Confidence 221 12211 1111 1112222222 4444 788889999944432111
Q ss_pred hhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 342 ACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 342 ~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
...+..++.+++.+..+ .+.++++.+|+++..
T Consensus 159 --d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~ 191 (207)
T 1znw_A 159 --ADVIQRRLDTARIELAAQGDFDKVVVNRRLESA 191 (207)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHH
T ss_pred --HHHHHHHHHHHHHHHhhhccCcEEEECCCHHHH
Confidence 11233355666666543 477889999987644
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.01 Score=53.24 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=21.6
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+-.+.|+|+|++|||||||++.|.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567799999999999999999543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0091 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++||||||+.+.|+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4699999999999999999654
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0098 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356799999999999999999543
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0099 Score=54.02 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.|++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56799999999999999999543
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0077 Score=54.77 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
++|+|+||||||||+..|+
T Consensus 7 i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999883
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.017 Score=52.99 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=36.5
Q ss_pred ceeeEeccCCcchhHHHHhhhccccc-CCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDL-YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~-~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.+.++|.+|+|||||+|.|..... +.... + ...... .. ..+.-+|....+.++||+|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~----~~~~~~--~~--~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-E----VLGEDT--YE--RTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----G----GGCTTE--EE--EEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-c----ccceeE--EE--EEEEECCeEEEEEEEEeccCc
Confidence 47899999999999999999975331 11111 0 011111 11 122335667888999999754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.28 E-value=0.01 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|+|||||++.+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4669999999999999999954
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0088 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4569999999999999999954
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0075 Score=58.47 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||.+.|+.
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 38999999999999999954
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=53.36 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.1
Q ss_pred cceeecceEEE-----EEEcCCCCCHHHHHHHHhc
Q psy91 92 KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 92 ~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~ 121 (541)
+..+++.-+.+ +|.|+||+|||||.-.|..
T Consensus 4 ~~~lHas~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44567766666 8999999999999988844
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.023 Score=53.45 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=37.7
Q ss_pred cceeeEeccCCcchhHHHHhhhccccc-CCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDL-YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~-~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..+.+.++|.+|+|||||+|.|..... +.... +. .+ .. .... .+.-+|....+.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~--~g--~d--~~~~--~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EV--LG--ED--TYER--TLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC------CC--TT--EEEE--EEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-Cc--cc--ee--eEEE--EEEECCeeeEEEEeecCCCc
Confidence 347899999999999999999875331 11111 10 01 11 1111 22335667889999999753
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0076 Score=54.93 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.012 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34699999999999999999764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0097 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.008 Score=54.57 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|+
T Consensus 14 i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4799999999999999994
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.011 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=53.75 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456799999999999999988543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0027 Score=68.35 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=21.7
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHH
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L 119 (541)
.++++++.+ +|+|+|||||||||.+|
T Consensus 50 ~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp TBSCEEEECCCSEEEEEESHHHHHHHHTHHH
T ss_pred ceeeEEEecCCCeEEEEcCCCCCHHHHHHHH
Confidence 345566655 99999999999999999
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456799999999999999999543
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35669999999999999999953
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=54.68 Aligned_cols=23 Identities=52% Similarity=0.700 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 46779999999999999999953
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0058 Score=61.15 Aligned_cols=19 Identities=47% Similarity=0.594 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+|||||||||++..|++
T Consensus 108 ~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHH
Confidence 9999999999999999954
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0085 Score=54.56 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||+||||||+.+.|+
T Consensus 8 i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999994
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.012 Score=53.20 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
-.+.|+|+|++|||||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467799999999999999999653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.011 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456799999999999999999543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0085 Score=55.52 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.8
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
+.++|.+|+||||+++.|..
T Consensus 4 i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHh
Confidence 67899999999999998864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=56.98 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 456799999999999999999653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5679999999999999999954
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456799999999999999999543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.013 Score=54.01 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356799999999999999999654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.011 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999553
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0092 Score=54.54 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999999943
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=59.24 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=27.0
Q ss_pred ccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc
Q psy91 89 VHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 89 ~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~ 121 (541)
+.....+++..+.+ +|+|+||+|||||...|..
T Consensus 129 ~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 129 LARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34456788887777 9999999999999999854
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.013 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45679999999999999999954
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.028 Score=59.11 Aligned_cols=70 Identities=27% Similarity=0.221 Sum_probs=41.0
Q ss_pred eEeccCCcchhHHHHhhhcccc-------cCC-----CCCCCCCCCCCCcceEEeeeE--EEee-ecCeeeeEEEEcCCC
Q psy91 265 LMVVGESGLGKSTLVNSLFLSD-------LYG-----DRKVPNVNDRQGKTTTIEKKS--MDIE-ERGVKLRLTVVDTPG 329 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~-------~~~-----~~~~~~ls~g~~q~v~I~~~~--~~i~-e~gv~~~L~I~DePg 329 (541)
+-|+|..++|||||+|.|++.. .+. ......-.+....|..|-... +.+. .+|-+..++++||||
T Consensus 70 VsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG 149 (447)
T 3q5d_A 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG 149 (447)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCc
Confidence 5689999999999999998641 000 001111112233344443321 1111 245578899999999
Q ss_pred CCCCc
Q psy91 330 FGDSI 334 (541)
Q Consensus 330 ~Gd~~ 334 (541)
+++..
T Consensus 150 ~~~~~ 154 (447)
T 3q5d_A 150 TFDSQ 154 (447)
T ss_dssp CCSSH
T ss_pred ccccc
Confidence 98774
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=62.67 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=34.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+.++|.+|+|||||+|.|.......- .+ ...++..+....++.. ...+.|+||||+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v---~~-----~~g~t~~~~~~~~~~~--~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIV---ED-----TPGVTRDRIYSSAEWL--NYDFNLIDTGGIDI 83 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-------------------CEEEECTTC--SSCCEEECCCC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCccc---CC-----CCCcceeEEEEEEEEC--CceEEEEECCCCCC
Confidence 4689999999999999999987652111 00 0112222222232223 35789999999874
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0092 Score=54.54 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|.|+|++||||||+.+.|+
T Consensus 8 I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.013 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35679999999999999999954
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.013 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456799999999999999999553
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=54.15 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456799999999999999999543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0034 Score=63.55 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||+|+|||||+++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999944
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0094 Score=61.13 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|+|++|||||||++.|.+.
T Consensus 182 V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 599999999999999999654
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.014 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=21.3
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+-.+.|+|+|++|+|||||++.|.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34467799999999999999999553
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
=.+.|+|+|++|+|||||++.|.+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 346779999999999999999954
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=20.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
-.+.|+|+|++|+|||||++.|.+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhc
Confidence 345679999999999999999954
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0012 Score=68.83 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=70.5
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHh
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 280 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in 280 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+.+.. ..|+.++.......++.+...+ |....-...+++
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t----~~~~v~q~~~~~~ltv~D~~g~-----~~~~~~~~~~L~ 142 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT----MERHPYKHPNIPNVVFWDLPGI-----GSTNFPPDTYLE 142 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------CCCEEEECSSCTTEEEEECCCG-----GGSSCCHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc----eeEEeccccccCCeeehHhhcc-----cchHHHHHHHHH
Confidence 4568999999999999999999987776643322211 1255555432223333332211 111111245566
Q ss_pred hhcccccCCCCCCCCCCCC--CCcceEEeeeEEEeeec----CeeeeEEEEcCCCCCCCccch
Q psy91 281 SLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEER----GVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 281 ~L~~~~~~~~~~~~~ls~g--~~q~v~I~~~~~~i~e~----gv~~~L~I~DePg~Gd~~~~~ 337 (541)
.+.+.+. +..+. +|+| ++|++.|++++...... -.+++++++|||..|.+....
T Consensus 143 ~~~L~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 143 KMKFYEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDK 202 (413)
T ss_dssp HTTGGGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCH
T ss_pred HcCCCcc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHH
Confidence 5554431 12222 7888 88888887765331000 005778899999777655443
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45679999999999999999954
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.015 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35679999999999999999964
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.016 Score=57.85 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.+.|||+|++|||||||++.|.+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567999999999999999997643
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.016 Score=60.91 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=30.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+.++|.+|+|||||+|.|....... ..+ .. .++..+....++-+| .++.|+||||...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~---v~~---~~--g~T~d~~~~~~~~~~--~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI---VED---TP--GVTRDRIYSSAEWLN--YDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------------CEEEECTTCS--SCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee---ecC---CC--CCccceEEEEEEECC--ceEEEEECCCCCC
Confidence 468899999999999999998765211 111 01 122222222222233 4789999999863
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35679999999999999999954
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+++|++|||||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.015 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46699999999999999999543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0094 Score=59.31 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+|||||||||++..|++
T Consensus 108 i~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 39999999999999999954
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.013 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56799999999999999999543
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.015 Score=56.54 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46799999999999999999653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0078 Score=63.76 Aligned_cols=61 Identities=26% Similarity=0.428 Sum_probs=31.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+++.++|.+|+|||||+|.|...+.......+ + .+..+....+. -+| ..+.|+||||+.+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~----g--tT~d~~~~~i~--~~g--~~v~liDT~G~~~~ 285 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP----G--TTRDVVESQLV--VGG--IPVQVLDTAGIRET 285 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT----T--CCHHHHHHEEE--ETT--EEEEECC-------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----C--eeEEEEEEEEE--ECC--EEEEEEECCccccc
Confidence 46999999999999999999876522111111 1 11111111111 233 46799999998653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|+|||||++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999954
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.022 Score=59.83 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~ 284 (541)
.+++.++|..+.|||||+|.|..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999943
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456799999999999999999543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356799999999999999999543
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.017 Score=61.42 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.3
Q ss_pred ccceeeEeccCCcchhHHHHhhhccc
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~ 285 (541)
.-.+++.++|..+.|||||+|.|...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998643
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.017 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356799999999999999999653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56799999999999999999653
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.016 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHh
Confidence 45679999999999999999954
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.011 Score=55.19 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||+||||||+.+.|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999993
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.014 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.5
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.-.+.|+|+|++|||||||++.|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999964
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0079 Score=63.21 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=37.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+++.++|.+|+|||||+|.|...+...... .. .+........++-+| .++.|+||||..+.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~---~~-----gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---VA-----GTTRDAVDTSFTYNQ--QEFVIVDTAGMRKK 236 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------------CCEEEEETT--EEEEETTHHHHTCB
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecC---CC-----CceeeeeEEEEEECC--eEEEEEECCCcCcC
Confidence 4789999999999999999998765221111 01 111122222233344 35899999998654
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.015 Score=57.05 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|.+|||||||++.|.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999999664
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.021 Score=58.64 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=39.0
Q ss_pred hccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 259 ~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.-...+.++|.+++|||||+|.|.+...... .-...|+......+. -. ..++.++|+||+-.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~-------~~pftT~~~~~g~~~--~~--~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAA-------EYEFTTLVTVPGVIR--YK--GAKIQMLDLPGIID 131 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGG-------GTCSSCCCEEEEEEE--ET--TEEEEEEECGGGCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCccc-------CCCCceeeeeeEEEE--eC--CcEEEEEeCCCccC
Confidence 33345788999999999999999987652111 111222222222222 22 46789999999854
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=54.55 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.8
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.-.+.|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999653
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.015 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456799999999999999999543
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.017 Score=62.54 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.4
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
+.++|+|..|+|||||+|.|.....
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5789999999999999999998764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=58.84 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=34.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||+|.|........ ..|+.+.... ++.+ ..++.|+||||.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~----------~pT~~~~~~~--~~~~--~~~l~i~Dt~G~ 219 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVET--VEYK--NISFTVWDVGGQ 219 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE----------EEETTEEEEE--EEET--TEEEEEEECC--
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc----------ccccceEEEE--EecC--cEEEEEEECCCC
Confidence 46899999999999999999976542110 1122222222 2222 468999999994
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.012 Score=55.04 Aligned_cols=20 Identities=40% Similarity=0.381 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|..
T Consensus 28 i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999944
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.018 Score=59.02 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=33.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.++|.+|+|||||+|.|.......... ...|.......+ .-+| ..+.++||||+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~-------~~~T~d~~~~~i--~~~g--~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTK-------LFTTMSPKRYAI--PINN--RKIMLVDTVGFIRG 239 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------------CCSCEEEE--EETT--EEEEEEECCCBCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC-------cccccCCEEEEE--EECC--EEEEEEeCCCchhc
Confidence 38899999999999999998765211111 111111111222 2233 46789999998654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35679999999999999999954
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.0
Q ss_pred ecceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 96 KGFDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 96 ~~isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
....+.|+|+|++|||||||++.+.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHh
Confidence 34556789999999999999999954
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.019 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
..|+|+|++|||||||++.|.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35699999999999999999553
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.01 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..+.|+|+|++|||||||++.|.+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456779999999999999999964
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.016 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|.+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45799999999999999999553
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.|.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46779999999999999999954
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.018 Score=56.23 Aligned_cols=24 Identities=42% Similarity=0.742 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+++|++|+|||||++.|++.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 467799999999999999999654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0027 Score=64.85 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=17.8
Q ss_pred EE-EEEcCCCCCHHHHHHHHh
Q psy91 101 TL-MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~i-aIiGpSGsGKSTLL~~L~ 120 (541)
.+ .|.||+|||||||+..++
T Consensus 62 ~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 44 899999999999999993
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.016 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=54.01 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|+|++||||||+.+.|...
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999543
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=56.07 Aligned_cols=24 Identities=46% Similarity=0.742 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.|++.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 467799999999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 541 | ||||
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 2e-06 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 1e-05 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 1e-05 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 7e-04 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 7e-04 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 0.002 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 0.003 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.003 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 47.1 bits (111), Expect = 2e-06
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 14/142 (9%)
Query: 243 IGFATLPEQVHRK--------SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 294
G T K + T++V+G+ G+GKS+ VNS+ +V
Sbjct: 5 SGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII------GERVV 58
Query: 295 NVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQY 354
+++ Q + S + + T G + + ++ Y
Sbjct: 59 SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLY 118
Query: 355 FNDENRQGKTTTIEKKSMDIEE 376
+ + + + I +
Sbjct: 119 VDRLDAYRVDNLDKLVAKAITD 140
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 44.4 bits (104), Expect = 1e-05
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 77 RDYIGFATLPEQVHRK--------SVKKGFDFTLMVVGESGLGKSTLVNSLF 120
R++ G T K + T++V+G+ G+GKS+ VNS+
Sbjct: 2 REWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 53
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 44.4 bits (104), Expect = 1e-05
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 176 RDYIGFATLPEQVHRK--------SVKKGFDFTLMVVGESGLGKSTLVNSLF 219
R++ G T K + T++V+G+ G+GKS+ VNS+
Sbjct: 2 REWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 53
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F ++++G +G+GK+ LV F L+ QG T ++ +E G K++L
Sbjct: 6 FKIVLIGNAGVGKTCLVRR-FTQGLF--------PPGQGATIGVDFMIKTVEINGEKVKL 56
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 57 QIWDTAG 63
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (89), Expect = 7e-04
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 259 KGFD--FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316
K +D F L+++G+SG+GK+ ++ F D N T I+ K IE
Sbjct: 1 KTYDYLFKLLLIGDSGVGKTCVLFR-FSED--------AFNSTFISTIGIDFKIRTIELD 51
Query: 317 GVKLRLTVVDTPG 329
G +++L + DT G
Sbjct: 52 GKRIKLQIWDTAG 64
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (88), Expect = 7e-04
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
++++G+SG+GKS L+ F+ D + + T I+ K ++ G K++L
Sbjct: 3 MKILLIGDSGVGKSCLLVR-FVEDKFNPSFIT--------TIGIDFKIKTVDINGKKVKL 53
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 54 QIWDTAG 60
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 37.5 bits (87), Expect = 0.002
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLM------VVGESGLGKSTL 278
G R + G + + ++ F +V + + + +VG SG GKST+
Sbjct: 3 GKRVIDRA--TGDLEFRNVTFTYPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTI 57
Query: 279 VNSLF 283
+ +
Sbjct: 58 ASLIT 62
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI--EKKSMDIEERGVKL 320
L+ +G+SG+GK+T + + + + + + V + + + + K+
Sbjct: 6 IKLLALGDSGVGKTTFLYR-YTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64
Query: 321 RLTVVDTPG 329
L + DT G
Sbjct: 65 HLQLWDTAG 73
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (87), Expect = 0.003
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
+ V GE+G GKS+ +N+L + + + T +
Sbjct: 57 LNVAVTGETGSGKSSFINTLR--GIGNEEEGAAKTGVVEVTMERHPYKHPNIP-----NV 109
Query: 323 TVVDTPGFGDSINSEE 338
D PG G + +
Sbjct: 110 VFWDLPGIGSTNFPPD 125
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.97 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.97 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.96 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.96 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.95 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.94 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.94 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.94 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.93 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.92 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.92 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.92 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.9 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.85 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.81 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.81 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 97.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 97.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.75 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.7 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.44 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.35 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 97.34 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.25 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 97.22 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 97.19 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 97.15 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 97.04 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.02 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.01 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.01 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 97.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.98 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.97 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 96.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 96.96 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.89 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.82 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.8 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.78 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 96.77 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.7 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.64 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.63 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.6 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.59 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.58 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.58 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.58 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.55 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.54 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.53 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.53 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.52 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.5 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.5 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.47 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.46 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.44 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.43 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.42 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.42 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.4 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.39 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.39 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 96.39 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.36 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.33 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.32 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.32 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.31 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.3 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.28 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.26 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.22 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.22 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.22 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.21 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.21 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.2 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.19 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.19 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 96.18 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.18 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.18 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.17 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.15 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.13 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.13 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.12 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.11 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.07 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.05 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.04 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 96.04 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.03 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.01 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 96.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.98 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.97 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.89 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.85 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.85 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.8 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.78 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.77 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.76 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.71 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.68 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.68 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.66 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.64 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.6 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 95.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.57 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.51 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.51 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.51 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.45 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.43 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.42 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.42 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.42 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.41 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.4 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.38 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.37 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.35 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.3 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.26 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.25 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.25 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.25 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.23 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.21 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.2 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.19 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.13 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.12 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.09 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.08 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.08 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.06 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.04 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.01 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.99 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.99 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.96 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.93 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.91 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.88 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.87 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.86 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 94.8 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.79 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.78 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.77 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 94.77 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.75 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.75 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.72 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.71 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.69 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.66 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.63 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.62 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.62 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.62 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.61 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.58 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.54 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.52 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.51 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.5 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 94.5 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.5 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.47 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.45 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.39 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.38 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.38 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.36 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.35 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.33 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.31 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.2 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 94.16 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.12 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.05 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.05 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.03 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.02 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.02 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.01 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.99 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 93.89 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.79 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.78 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.77 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.72 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.63 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.37 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.35 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.35 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.2 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 93.16 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.11 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.07 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.95 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.7 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.68 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.64 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.59 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.56 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.49 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.45 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.45 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.43 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.41 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.41 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.26 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.26 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.09 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.96 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.9 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.82 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.76 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.75 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.71 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.71 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 91.69 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.63 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.56 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.53 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.53 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.52 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.5 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.34 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.31 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.13 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 91.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.96 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 90.81 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.73 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.71 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 90.63 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.37 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.3 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 90.29 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.99 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.95 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.77 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.51 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.48 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 89.36 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.2 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.19 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.11 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.07 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.77 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 88.68 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 88.57 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.52 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.45 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.43 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.3 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 87.55 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.45 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.21 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.04 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.73 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 86.58 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.55 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 86.52 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 86.45 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 86.24 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 85.77 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.65 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 85.47 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 85.22 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 84.94 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.48 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.37 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.31 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.29 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 84.04 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 83.97 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 83.93 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 83.85 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.75 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.72 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.68 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 83.51 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.51 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 83.51 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 83.22 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 83.19 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.69 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 82.6 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 82.39 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.23 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 82.2 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 81.98 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 81.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 81.9 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.88 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.67 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 81.33 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 81.31 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 81.29 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 81.29 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 81.24 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.13 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.0 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.62 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 80.55 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 80.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 80.37 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 80.34 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.25 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.02 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.3e-32 Score=260.71 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=127.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+++||+++|++..+|+||||+| ||+|||||||||||++| +..+++|+|+ ++|+. +...+ ..+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~---i~g~~----i~~~~--~~~ 71 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF---IGEKR----MNDTP--PAE 71 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ESSSC----CTTSC--GGG
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEE---ECCEE----CCCCc--hhh
Confidence 68999999999999999999999 99999999999999999 5568899999 88983 33222 234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+|||||++.+++++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 72 r~ig~v~Q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----------------------- 122 (232)
T d2awna2 72 RGVGMVFQSYALYPHL------SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----------------------- 122 (232)
T ss_dssp TCEEEECSSCCC---------------------------CHHHHHHHHHHHHC---------------------------
T ss_pred ceeeeeccccccccch------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-----------------------
Confidence 5799999999999999 99999999855556667777888889898888864
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++++..+|||++||++|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 123 --------------------------------------------------------LLDRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred --------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 234456779999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|+++++|||+.|-+..... ++.+.|.+..+ .+.|+++.+|+++.. ..++.|+.++.
T Consensus 147 ~------~P~illlDEPts~LD~~~~~-----------~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~~dri~vm~ 205 (232)
T d2awna2 147 A------EPSVFLLDEPLSNLDAALRV-----------QMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKIVVLD 205 (232)
T ss_dssp T------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHSCCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred c------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 8 99999999998886654443 66677777654 588999999998744 34677777764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.97 E-value=1.8e-32 Score=263.88 Aligned_cols=203 Identities=17% Similarity=0.180 Sum_probs=165.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||+++||+..+|+||||+| +|+|||||||||||++| +..|++|+|+ ++|..+...........+
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~---~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY---IGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEE---ECCEEecccchhhhcccc
Confidence 589999999999999999999999 99999999999999999 4568899999 899854332222223344
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||++.|+|++ ||.||+.++....+.++.+..+++.++++.+|+.+
T Consensus 80 ~r~ig~v~Q~~~L~~~l------tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~---------------------- 131 (240)
T d1g2912 80 DRDIAMVFQSYALYPHM------TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE---------------------- 131 (240)
T ss_dssp GSSEEEECSCCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG----------------------
T ss_pred cccceecccchhhcchh------hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 66899999999999999 99999999855556677788888999999998865
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+|||++|+++|++++
T Consensus 132 ---------------------------------------------------------~~~~~p~~LSGGqkQRv~IAraL 154 (240)
T d1g2912 132 ---------------------------------------------------------LLNRKPRELSGGQRQRVALGRAI 154 (240)
T ss_dssp ---------------------------------------------------------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHH
Confidence 22345667999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||+.|-+..... ++.+.|.+..+. +.|+++.+|+++.. ..++.|+.++.
T Consensus 155 ~~------~P~iLllDEPt~~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vTHd~~~~-~~~~drv~vm~ 214 (240)
T d1g2912 155 VR------KPQVFLMDEPLSNLDAKLRV-----------RMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAVMN 214 (240)
T ss_dssp HT------CCSEEEEECTTTTSCHHHHH-----------HHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred hc------CCCEEEecCCCcccCHHHHH-----------HHHHHHHHHHhccCCEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 99 99999999998886655443 677777777554 89999999998744 34777887764
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=6.4e-32 Score=259.56 Aligned_cols=197 Identities=13% Similarity=0.143 Sum_probs=156.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||+++||+..+|++|||+| +|+|||||||||||++| +..|++|+|+ ++|+++ ...+ ..
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~---i~g~~i----~~~~--~~ 76 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FGDRDV----TYLP--PK 76 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE---Ecceec----ccCC--cc
Confidence 489999999999999999999999 99999999999999999 5578899999 899833 2222 23
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||++.++|++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 77 ~r~ig~v~Q~~~l~~~l------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHM------TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE---------------------- 128 (239)
T ss_dssp GGTEEEEEC------CC------CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG----------------------
T ss_pred cceEEEEeechhhcccc------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 45799999999999999 99999999865566778888889999999988864
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+|+|++|+++|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 129 ---------------------------------------------------------LLNRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp ---------------------------------------------------------GTTSCTTTCCSSCHHHHHHHHHH
T ss_pred ---------------------------------------------------------hhcCChhhCCHHHHHHHHHHhhh
Confidence 23456778999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||+.|-+..... ++.+.+.+..+. +.|+++.+|+++... .++.++.++.
T Consensus 152 ~~------~P~iLllDEPts~LD~~~~~-----------~i~~ll~~l~~~~g~tii~vTHd~~~a~-~~~dri~vm~ 211 (239)
T d1v43a3 152 VV------EPDVLLMDEPLSNLDAKLRV-----------AMRAEIKKLQQKLKVTTIYVTHDQVEAM-TMGDRIAVMN 211 (239)
T ss_dssp TT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHHTCEEEEEESCHHHHH-HHCSEEEEEE
T ss_pred cc------CCCceeecCCcccCCHHHHH-----------HHHHHHHHHHHhcCCeEEEEeCCHHHHH-HhCCEEEEEE
Confidence 98 99999999998876544432 677777777554 899999999988543 4777777764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.97 E-value=4.5e-32 Score=260.87 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=163.4
Q ss_pred ceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++||++.| +...+|+||||+| ||+|||||||||||++| +..|++|+|+ ++|+++.. .+....+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~---~~g~~i~~-~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY---FDDRLVAS-NGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE---ETTEEEEE-TTEESSC
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEE---ECCEEeec-Cchhhcc
Confidence 48899999999 4567999999999 99999999999999999 4568899999 99985532 2222233
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++++|||||++.|+|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 79 ~~rr~ig~vfQ~~~L~p~l------tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-------------------- 132 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNL------TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-------------------- 132 (242)
T ss_dssp GGGSCEEEEETTSCCCTTS------CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG--------------------
T ss_pred hhhccceEEeccccccccc------cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHh--------------------
Confidence 4556799999999999999 99999999855556677788888999999998864
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.++++..+|+|++|+++|++
T Consensus 133 -----------------------------------------------------------~~~~~p~~LSGGqkQRvaiAR 153 (242)
T d1oxxk2 133 -----------------------------------------------------------VLNHFPRELSGAQQQRVALAR 153 (242)
T ss_dssp -----------------------------------------------------------GTTSCGGGSCHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hhhCChhhCCHHHHhHHHHHh
Confidence 234456679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..... ++.+.+.+..+. +.|+++.+|+++... .++.++.++.
T Consensus 154 aL~~------~P~llllDEPt~~LD~~~~~-----------~i~~~i~~l~~~~g~tvi~vTHd~~~~~-~~~dri~vm~ 215 (242)
T d1oxxk2 154 ALVK------DPSLLLLDEPFSNLDARMRD-----------SARALVKEVQSRLGVTLLVVSHDPADIF-AIADRVGVLV 215 (242)
T ss_dssp HHTT------CCSEEEEESTTTTSCGGGHH-----------HHHHHHHHHHHHHCCEEEEEESCHHHHH-HHCSEEEEEE
T ss_pred HHhh------cccceeecCCccCCCHHHHH-----------HHHHHHHHHHhccCCEEEEEECCHHHHH-HhCCEEEEEE
Confidence 9999 99999999998776655543 677777777544 889999999977543 4677777763
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.7e-31 Score=257.06 Aligned_cols=200 Identities=18% Similarity=0.231 Sum_probs=161.1
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|+++||++.|+.. .+|+||||+| ||+|||||||||||++| +..|++|+|. ++|+++.. .+....
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~---~~g~~i~~-~~~~~~ 77 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL---VDGQELTT-LSESEL 77 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEECT-TCHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceE---EcCeEeee-CChhhh
Confidence 7899999999754 5899999999 99999999999999999 5568899999 89984431 122222
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||||++.+++++ ||+||+.++....+.++++..+++.++|+.+|+.+
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~------tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~------------------- 132 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSR------TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD------------------- 132 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTS------BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-------------------
T ss_pred hhhhccccccccccccCCCc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 23346799999999999999 99999999854455677778888999999998865
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++++..+|||++|+++|+
T Consensus 133 ------------------------------------------------------------~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 133 ------------------------------------------------------------KHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp ------------------------------------------------------------TTSSCBSCCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHh
Confidence 22445678999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||+.|.+..... ++.+.|.+..+. +.|+++.+|+++... .++.|+.++
T Consensus 153 raL~~------~P~lLllDEPt~~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vTHdl~~~~-~~~dri~vl 214 (240)
T d3dhwc1 153 RALAS------NPKVLLCDEATSALDPATTR-----------SILELLKDINRRLGLTILLITHEMDVVK-RICDCVAVI 214 (240)
T ss_dssp HHHHT------CCSEEEEESGGGSSCHHHHH-----------HHHHHHHHHHHHHCCEEEEEBSCHHHHH-HHCSEEEEE
T ss_pred hhhcc------CCCeEEeccccccCCHHHhh-----------HHHHHHHHHHhccCCEEEEEcCCHHHHH-HhCCEEEEE
Confidence 99999 99999999998776655443 777888887665 899999999988654 366776665
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=8.4e-31 Score=250.81 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=154.3
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|+++||++.|+.. .+|+||||+| ||+|||||||||||++|+ ..|++|+|+ ++|+.+...-.....
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~---~~g~~i~~~~~~~~~ 78 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY---IDNIKTNDLDDDELT 78 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECTTCCHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeE---ECCEEcCcCChhhcc
Confidence 7899999999753 3899999999 999999999999999994 468899999 888843211111111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceecccccc---chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE---QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~---~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
..+++.+|||||++.++|++ ||.||+.++.... .....+..+++.++|+.+|+..
T Consensus 79 ~~r~~~ig~v~Q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------------- 136 (230)
T d1l2ta_ 79 KIRRDKIGFVFQQFNLIPLL------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE---------------- 136 (230)
T ss_dssp HHHHHHEEEECTTCCCCTTS------CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG----------------
T ss_pred hhhcceEEEEecchhhCcCc------cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhh----------------
Confidence 22345799999999999999 9999999873222 2344555666777777776642
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
-+.++++..+|||++||+
T Consensus 137 --------------------------------------------------------------~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 137 --------------------------------------------------------------RFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp --------------------------------------------------------------GGTTCCGGGSCHHHHHHH
T ss_pred --------------------------------------------------------------hhhcCChhhCCHHHHHHH
Confidence 023445677999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+|+++++. +|+++|+|||+.|.+..+.. ++.++|.+..+ .+.|+++.+|++++. +++.|+
T Consensus 155 aIAraL~~------~P~lLllDEPTs~LD~~~~~-----------~i~~~l~~l~~~~g~tii~vTHd~~~a--~~~drv 215 (230)
T d1l2ta_ 155 AIARALAN------NPPIILADQPTGALDSKTGE-----------KIMQLLKKLNEEDGKTVVVVTHDINVA--RFGERI 215 (230)
T ss_dssp HHHHHHTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHTTCCEEEEECSCHHHH--TTSSEE
T ss_pred HHHhhhhc------CCCEEEecCCccccCHHHHH-----------HHHHHHHHHHHhhCCEEEEECCCHHHH--HhCCEE
Confidence 99999998 99999999997776655543 67777877765 488999999998854 478888
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~m~ 219 (230)
T d1l2ta_ 216 IYLK 219 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.95 E-value=2.8e-30 Score=246.54 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=150.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+++||+++|++ .+|+||||+| ||+|||||||||||++| +..|++|+|+ ++|+++ .... ..+
T Consensus 2 i~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~---~~G~~i----~~~~--~~~ 71 (229)
T d3d31a2 2 IEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL---LDGKDV----TDLS--PEK 71 (229)
T ss_dssp EEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--HHH
T ss_pred EEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEE---EccEec----cccc--hhH
Confidence 789999999987 4899999999 99999999999999999 4468899999 899843 2222 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+|||||++.|+|++ ||+||+.|+....+. ...+++.++++.+|+.+
T Consensus 72 r~ig~v~Q~~~l~~~~------tV~enl~~~~~~~~~---~~~~~~~~~l~~~~l~~----------------------- 119 (229)
T d3d31a2 72 HDIAFVYQNYSLFPHM------NVKKNLEFGMRMKKI---KDPKRVLDTARDLKIEH----------------------- 119 (229)
T ss_dssp HTCEEECTTCCCCTTS------CHHHHHHHHHHHHCC---CCHHHHHHHHHHTTCTT-----------------------
T ss_pred hcceeeccccccCccc------cHHHHHHHHHhhccc---cHHHHHHHHHHHhcchh-----------------------
Confidence 5799999999999999 999999988322222 22345677777777654
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|+++|+++++
T Consensus 120 --------------------------------------------------------~~~~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 120 --------------------------------------------------------LLDRNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp --------------------------------------------------------TTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------hHhCChhhCCHHHhcchhhhhhhh
Confidence 223456679999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +|+++|+|||+.|-+..... .+.+.+.+..+ .+.|+++.+|+++.. ..++.++.++
T Consensus 144 ~------~P~iLllDEPts~LD~~~~~-----------~i~~~l~~l~~~~g~tii~vtHd~~~~-~~~~drv~vm 201 (229)
T d3d31a2 144 T------NPKILLLDEPLSALDPRTQE-----------NAREMLSVLHKKNKLTVLHITHDQTEA-RIMADRIAVV 201 (229)
T ss_dssp S------CCSEEEEESSSTTSCHHHHH-----------HHHHHHHHHHHHTTCEEEEEESCHHHH-HHHCSEEEEE
T ss_pred c------cCCceeecCCCcCCCHHHHH-----------HHHHHHHHHHhcCCcEEEEEcCCHHHH-HHhCCEEEEE
Confidence 9 99999999998886655543 67777777754 478999999998743 3477888776
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=2.1e-29 Score=245.97 Aligned_cols=204 Identities=17% Similarity=0.140 Sum_probs=160.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccc------
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAG------ 144 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~------ 144 (541)
.|+++||+++||+..+|+||||+| ||+||||||||||+++|+ ..+++|+|+ ++|+.+......
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~---~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII---VNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEE---ECCEEeccCCccchhccc
Confidence 378999999999999999999999 999999999999999994 467899999 888854321111
Q ss_pred ---cccccccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 145 ---TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 145 ---~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.....+++++|||||++.+++.+ ||.||+.++.+ ..+.+..+..+++.++++.+|+...
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~------tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------- 141 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHM------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER----------- 141 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH-----------
T ss_pred ccHhHHHHHhcceEEEEechhhccch------hcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------
Confidence 11123456799999999999999 99999998732 2344566777788888888887531
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..++.+..+|||+
T Consensus 142 -------------------------------------------------------------------~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 142 -------------------------------------------------------------------AQGKYPVHLSGGQ 154 (258)
T ss_dssp -------------------------------------------------------------------HHTSCGGGSCHHH
T ss_pred -------------------------------------------------------------------hhccCcccccHHH
Confidence 1123455689999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +|+++|+|||+.|-+..... ++.+.|.+..+.+.++++.+|+++.. ..++
T Consensus 155 ~QRv~iAraL~~------~P~llilDEPT~gLD~~~~~-----------~i~~ll~~l~~~g~til~vtHdl~~~-~~~a 216 (258)
T d1b0ua_ 155 QQRVSIARALAM------EPDVLLFDEPTSALDPELVG-----------EVLRIMQQLAEEGKTMVVVTHEMGFA-RHVS 216 (258)
T ss_dssp HHHHHHHHHHHT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHTTCCEEEECSCHHHH-HHHC
T ss_pred HHHHHHHHHHhc------CCCEEEeccccccCCHHHHH-----------HHHHhhhhhcccCCceEEEeCCHHHH-HHhC
Confidence 999999999998 99999999998887765553 66777777777788999999998755 3577
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.|+.++.
T Consensus 217 dri~vm~ 223 (258)
T d1b0ua_ 217 SHVIFLH 223 (258)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 8887763
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.94 E-value=1.1e-28 Score=238.67 Aligned_cols=200 Identities=14% Similarity=0.195 Sum_probs=152.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+..++++||+++||+..+|+||||+| ||+||||||||||+++|+ ..+++|+|+ ++|+++ ...+..
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~---~~G~~i----~~~~~~ 76 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII---FNGQDI----TNKPAH 76 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----TTCCHH
T ss_pred ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE---eccccc----ccccHH
Confidence 35789999999999999999999999 999999999999999994 467899999 899833 322222
Q ss_pred c-ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHh-CCCCccchhhhhhhccccccCC
Q psy91 149 G-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVV-GESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 149 ~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~v-GL~g~~ks~l~~~l~gl~~~~~ 226 (541)
. .+..++|++|+..+|+.+ ||+||+.++..... .+....+.++.++..+ ++.
T Consensus 77 ~~~r~gi~~~~q~~~l~~~l------tv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~------------------- 130 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPEL------TVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLK------------------- 130 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTS------BHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHH-------------------
T ss_pred HHHHhcccccCcccccCCcc------cHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChH-------------------
Confidence 2 234699999999999999 99999987733221 1222222222222221 111
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+ ..++.+..+|+|++|++.|
T Consensus 131 -----------------------------------------------------------~-~~~~~~~~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 131 -----------------------------------------------------------E-RLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp -----------------------------------------------------------T-TTTSBSSSSCHHHHHHHHH
T ss_pred -----------------------------------------------------------H-HHhCchhhCCHHHHHHHHH
Confidence 1 3345567899999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +|+++|+|||+.|-+..... ++.+.+.+..+.+.++++.+|+++... +++.++.++
T Consensus 151 AraL~~------~P~lLllDEPt~gLD~~~~~-----------~i~~~i~~l~~~g~til~~tH~l~~~~-~~~drv~vl 212 (240)
T d1ji0a_ 151 GRALMS------RPKLLMMDEPSLGLAPILVS-----------EVFEVIQKINQEGTTILLVEQNALGAL-KVAHYGYVL 212 (240)
T ss_dssp HHHHTT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHTTCCEEEEESCHHHHH-HHCSEEEEE
T ss_pred HHHHHh------CCCEeeecCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999999987765553 777788887777899999999987544 578888877
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 213 ~ 213 (240)
T d1ji0a_ 213 E 213 (240)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.1e-28 Score=238.08 Aligned_cols=199 Identities=15% Similarity=0.212 Sum_probs=157.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||+++|+++.||+||||+| ||+|||||||||||++| ...|+.|+|. ++|+++ ...+ ..
T Consensus 1 gaI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~---i~G~~i----~~~~-~~ 72 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT---VFGKNV----VEEP-HE 72 (238)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEET----TTCH-HH
T ss_pred CCEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---ECcEec----ccCh-HH
Confidence 3588999999999999999999999 99999999999999999 4467899999 888832 2222 23
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||+|+..+++++ |+.||+.|........+.+..+.++.+++.+|+...
T Consensus 73 ~~~~i~~vpq~~~~~~~l------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------------- 126 (238)
T d1vpla_ 73 VRKLISYLPEEAGAYRNM------QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-------------------- 126 (238)
T ss_dssp HHTTEEEECTTCCCCTTS------BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG--------------------
T ss_pred HHhhEeEeeeccccCCCc------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--------------------
Confidence 356799999999999999 999999876322233455566667777777776541
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+..+..+|+|++|++.|+++
T Consensus 127 -----------------------------------------------------------~~~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 127 -----------------------------------------------------------IKDRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp -----------------------------------------------------------GGSBGGGCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------HhhhhhhCCHHHHHHHHHHHH
Confidence 122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++|+|||..|-+..... ++.+++.+..+.++++++.+|+++.. ..++.++.|+.
T Consensus 148 l~~------~p~illLDEPt~gLD~~~~~-----------~i~~~i~~~~~~g~tii~~tH~l~~~-~~~~drv~vl~ 207 (238)
T d1vpla_ 148 LMV------NPRLAILDEPTSGLDVLNAR-----------EVRKILKQASQEGLTILVSSHNMLEV-EFLCDRIALIH 207 (238)
T ss_dssp HTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEEECCHHHH-TTTCSEEEEEE
T ss_pred Hhc------CCCEEEecCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 998 99999999999887755443 67777877777799999999998744 45788887764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=1.9e-28 Score=239.24 Aligned_cols=199 Identities=17% Similarity=0.120 Sum_probs=151.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceeccccccc-cc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKV-RG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~-~~ 149 (541)
.++++||+++||+..+|+||||+| ||+||||||||||+++|+ ..+++|+|+ ++|+++ ..... ..
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~---~~g~~i----~~~~~~~~ 76 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDI----TNKEPAEL 76 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----TTCCHHHH
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEE---ECCEec----cchhHHHH
Confidence 589999999999999999999999 999999999999999994 467889999 999833 32222 22
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchh-------------hHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-------------RKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-------------~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
.+..++||||+..+++.+ ||.||+.++....... .++..+++..+++.+|+.
T Consensus 77 ~~~gi~~v~Q~~~~~~~l------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------- 141 (254)
T d1g6ha_ 77 YHYGIVRTFQTPQPLKEM------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS--------- 141 (254)
T ss_dssp HHHTEEECCCCCGGGGGS------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG---------
T ss_pred HHhcCCccCCccccCCCC------eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc---------
Confidence 345699999999999999 9999999873322110 111122233333333332
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
. ..++.+..+
T Consensus 142 ---------------------------------------------------------------------~-~~~~~~~~L 151 (254)
T d1g6ha_ 142 ---------------------------------------------------------------------H-LYDRKAGEL 151 (254)
T ss_dssp ---------------------------------------------------------------------G-GTTSBGGGS
T ss_pred ---------------------------------------------------------------------h-hccCchhhC
Confidence 2 345567789
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
|+|++|++.|+++++. +|+++|+|||+.|-+..... ++.+.+.+....+.++++.+|+++..
T Consensus 152 SgG~~Qrv~iAraL~~------~P~llilDEPt~gLD~~~~~-----------~i~~~i~~l~~~g~til~vsHdl~~~- 213 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMT------NPKMIVMDEPIAGVAPGLAH-----------DIFNHVLELKAKGITFLIIEHRLDIV- 213 (254)
T ss_dssp CHHHHHHHHHHHHHHT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCCSTT-
T ss_pred CcHHHHHHHHHHHHHh------CcCchhhcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCcHHHH-
Confidence 9999999999999998 99999999999997765543 67777777766789999999998844
Q ss_pred hcccceeEEEc
Q psy91 377 RGVKLRLTVVD 387 (541)
Q Consensus 377 ~~l~~rvnvIp 387 (541)
.+++.++.|+.
T Consensus 214 ~~~~Drv~vm~ 224 (254)
T d1g6ha_ 214 LNYIDHLYVMF 224 (254)
T ss_dssp GGGCSEEEEEE
T ss_pred HHhCCEEEEEe
Confidence 35788888774
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=2.5e-28 Score=234.00 Aligned_cols=191 Identities=15% Similarity=0.199 Sum_probs=150.3
Q ss_pred eeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
+.+ ++.++||+..+ ||||++ +|+|||||||||||++| +..|++|+|+ ++|+++ ...+ ..++
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~---~~G~~i----~~~~--~~~r 70 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR---LNGADI----TPLP--PERR 70 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--TTTS
T ss_pred EEE-EEEEEECCEEE--EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEE---ECCEEC----CcCC--HHHc
Confidence 455 45778887664 788888 89999999999999999 5568899999 999843 3222 2346
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.+|||||++.++|++ ||+||+.|+. ....+.+..+++.++++.+|+.+
T Consensus 71 ~ig~v~Q~~~l~~~l------tV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~------------------------ 118 (240)
T d2onka1 71 GIGFVPQDYALFPHL------SVYRNIAYGL--RNVERVERDRRVREMAEKLGIAH------------------------ 118 (240)
T ss_dssp CCBCCCSSCCCCTTS------CHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTT------------------------
T ss_pred Cceeeccchhhcccc------hhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHh------------------------
Confidence 799999999999999 9999999983 23455666778888888888754
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+.++++..+|||++|+++|+++++.
T Consensus 119 -------------------------------------------------------~~~~~~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 119 -------------------------------------------------------LLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp -------------------------------------------------------TTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHHhc
Confidence 2345567799999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|+++++|||..|-+..... ++.+++.+..+. +.++++.+|+++.. ..++.++.++.
T Consensus 144 ------~P~illlDEPts~LD~~~~~-----------~i~~~i~~l~~~~g~tvi~vtHd~~~~-~~~adri~vm~ 201 (240)
T d2onka1 144 ------QPRLLLLDEPLSAVDLKTKG-----------VLMEELRFVQREFDVPILHVTHDLIEA-AMLADEVAVML 201 (240)
T ss_dssp ------CCSSBEEESTTSSCCHHHHH-----------HHHHHHHHHHHHHTCCEEEEESCHHHH-HHHCSEEEEEE
T ss_pred ------cCCceEecCccccCCHHHHH-----------HHHHHHHHHHHhcCCeEEEEeCCHHHH-HHhCCEEEEEE
Confidence 99999999998886655543 667777777654 88999999997744 44777887774
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2e-26 Score=224.11 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=144.6
Q ss_pred CCCCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+|+||+++|+++ .+|+||||+| ||+||||||||||+++| +..|.+|+|+ ++|. .+.
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~---i~g~----~i~ 79 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL---LDGK----PLP 79 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTE----EGG
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEE---ECCE----ecc
Confidence 345679999999999754 4999999999 99999999999999999 5567889999 8898 333
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..++.++||+|++.+|+ . |+++|+.++..... .... ........++.
T Consensus 80 ~~~~~~~r~~i~~v~Q~~~lf~-~------tv~eni~~g~~~~~-~~~~----~~~~~~~~~~~---------------- 131 (251)
T d1jj7a_ 80 QYEHRYLHRQVAAVGQEPQVFG-R------SLQENIAYGLTQKP-TMEE----ITAAAVKSGAH---------------- 131 (251)
T ss_dssp GBCHHHHHHHEEEECSSCCCCS-S------BHHHHHHCSCSSCC-CHHH----HHHHHHHHTCH----------------
T ss_pred hhhhHHHHHHhhhccccccccC-c------chhhhhhhhhcccc-hHHH----HHHHHHHHHHH----------------
Confidence 3334456678999999998874 5 89999999732211 1111 11111111111
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc-cccCCCCCCCCCCCCCCc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~-~~~~~~~~~~~ls~g~~q 302 (541)
.++..|.. .+....+.+..+|+||+|
T Consensus 132 -----------------------------------------------------~~i~~l~~g~~~~i~~~~~~LSGGqkQ 158 (251)
T d1jj7a_ 132 -----------------------------------------------------SFISGLPQGYDTEVDEAGSQLSGGQRQ 158 (251)
T ss_dssp -----------------------------------------------------HHHHTSTTGGGCBCCSSCSSSCHHHHH
T ss_pred -----------------------------------------------------HHHHhccccchhhHhccCccCChhHce
Confidence 01111100 000122345679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
+++|+++++. +++++|+|||+.+-+..... ++.+.|.+..+ .++|+++.+|++.... ...
T Consensus 159 RvaiARal~~------~p~ililDEpTs~LD~~~~~-----------~i~~~l~~l~~~~~~Tvi~itH~l~~~~--~aD 219 (251)
T d1jj7a_ 159 AVALARALIR------KPCVLILDDATSALDANSQL-----------QVEQLLYESPERYSRSVLLITQHLSLVE--QAD 219 (251)
T ss_dssp HHHHHHHHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHTCGGGGGCEEEEECSCHHHHH--TCS
T ss_pred EEEEeecccc------CCcEEEecCcCcccChhhHH-----------HHHHHHHHHhhhcCCEEEEEeCCHHHHH--hCC
Confidence 9999999998 99999999998776655443 56666666654 4889999999987543 367
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 220 rI~vl~ 225 (251)
T d1jj7a_ 220 HILFLE 225 (251)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777774
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.92 E-value=4.6e-26 Score=220.36 Aligned_cols=201 Identities=13% Similarity=0.186 Sum_probs=142.2
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|+++||+|+|++ +.+|+||||+| ||+||||||||||+++| +..|.+|+|. ++|. .+.......+
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~---i~g~----~i~~~~~~~~ 74 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT---IDGQ----PIDNISLENW 74 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE---ETTE----ESTTTSCSCC
T ss_pred EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEE---ECCE----EeccccHHHH
Confidence 789999999955 67999999999 99999999999999999 4467899999 8898 4444444566
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||+|++.+|+ . |++||+.++.... ... ..+..+++..++......
T Consensus 75 r~~i~~v~Q~~~lf~-~------ti~eNi~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~------------------ 124 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMA-G------TIRENLTYGLEGD-YTD----EDLWQVLDLAFARSFVEN------------------ 124 (242)
T ss_dssp TTTCCEECCSSCCCC-E------EHHHHTTSCTTSC-SCH----HHHHHHHHHHTCTTTTTS------------------
T ss_pred HhheEEEccccccCC-c------chhhheecccccc-cch----hhHHHHHHHHHhhhhhcc------------------
Confidence 778999999998874 4 7999998873221 111 122333444443321000
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++ +++. . ......+|+|++|+++|++++
T Consensus 125 --------------------------~~~~------------------~~~~-----i-~~~g~~LSGGqkQRv~iARal 154 (242)
T d1mv5a_ 125 --------------------------MPDQ------------------LNTE-----V-GERGVKISGGQRQRLAIARAF 154 (242)
T ss_dssp --------------------------STTG------------------GGCE-----E-STTSBCCCHHHHHHHHHHHHH
T ss_pred --------------------------Cccc------------------cccc-----c-cCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0000 0 112446899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||+.+-+..+.. ++.+.|.+.. .++|+++.+|+++... .+.++.++.
T Consensus 155 ~~------~p~ililDEpts~LD~~~~~-----------~i~~~l~~l~-~~~Tvi~itH~l~~~~--~~D~i~vl~ 211 (242)
T d1mv5a_ 155 LR------NPKILMLDEATASLDSESES-----------MVQKALDSLM-KGRTTLVIAHRLSTIV--DADKIYFIE 211 (242)
T ss_dssp HH------CCSEEEEECCSCSSCSSSCC-----------HHHHHHHHHH-TTSEEEEECCSHHHHH--HCSEEEEEE
T ss_pred hc------CCCEEEecCCccccCHHHHH-----------HHHHHHHHHc-CCCEEEEEECCHHHHH--hCCEEEEEE
Confidence 98 99999999997766555543 5556666554 3789999999987553 377888875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.9e-26 Score=221.33 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=141.4
Q ss_pred eeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|+|+||+++|+ .+.+|+||||+| ||+||||||||||+++|++ .+.+|+|. ++|. .+.......
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~---i~g~----~i~~~~~~~ 74 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL---IDGH----DLALADPNW 74 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTE----ETTTSCHHH
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEE---ECCE----Eecccchhh
Confidence 78999999994 456999999999 9999999999999999944 57889999 8888 433333445
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++||+|++.+| .. |++||+.++.... . .+.+..++...++...
T Consensus 75 lr~~i~~v~Q~~~lf-~~------Ti~eNi~~~~~~~--~----~~~~~~~~~~~~~~~~-------------------- 121 (241)
T d2pmka1 75 LRRQVGVVLQDNVLL-NR------SIIDNISLANPGM--S----VEKVIYAAKLAGAHDF-------------------- 121 (241)
T ss_dssp HHHHEEEECSSCCCT-TS------BHHHHHCTTSTTC--C----HHHHHHHHHHHTCHHH--------------------
T ss_pred hhceEEEEecccccC-Cc------cccccccccCccc--c----HHHHHHHHHHHhhHHH--------------------
Confidence 567899999998876 45 8999999873111 1 1223333444333210
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc-cccCCCCCCCCCCCCCCcceEEee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~-~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++.+-. .+.........+|+|++|+++|++
T Consensus 122 -------------------------------------------------i~~~~~~~~t~i~~~g~~LSGGq~QRvalAR 152 (241)
T d2pmka1 122 -------------------------------------------------ISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152 (241)
T ss_dssp -------------------------------------------------HTTSTTGGGSBCSTTTTCCCHHHHHHHHHHH
T ss_pred -------------------------------------------------HHhhhcchhhhcCCCCCccCHHHHHHHhhhh
Confidence 000000 000112235679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+.+..... ++.+.|.+..+ ++|+++.+|+++.. +...++.+++
T Consensus 153 al~~------~p~ililDEpts~LD~~~~~-----------~i~~~l~~l~~-~~Tvi~itH~l~~~--~~~D~i~vl~ 211 (241)
T d2pmka1 153 ALVN------NPKILIFDEATSALDYESEH-----------VIMRNMHKICK-GRTVIIIAHRLSTV--KNADRIIVME 211 (241)
T ss_dssp HHTT------CCSEEEECCCCSCCCHHHHH-----------HHHHHHHHHHT-TSEEEEECSSGGGG--TTSSEEEEEE
T ss_pred hhhc------ccchhhhhCCccccCHHHHH-----------HHHHHHHHHhC-CCEEEEEECCHHHH--HhCCEEEEEE
Confidence 9998 99999999998876655443 55666665543 78999999998754 3467777775
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=8.8e-26 Score=219.55 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=144.0
Q ss_pred CCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+|+||+++|++ +++|+||||+| ||+||||||||||+++| +..+..|+|. ++|. .+....
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~---i~g~----~i~~~~ 86 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL---IDGH----NIKDFL 86 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE---ETTE----EGGGSC
T ss_pred CCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccc---cCCE----EcccCC
Confidence 456999999999965 56999999999 99999999999999999 5567889999 8888 333333
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...+++.++||+|++.+| .. |++||+.|+... .. .+.+..+++.+++...-.. .-.|++.
T Consensus 87 ~~~lr~~i~~v~Q~~~lf-~~------Ti~eNi~~g~~~--~~----~~~~~~al~~~~l~~~i~~----lp~gl~t--- 146 (255)
T d2hyda1 87 TGSLRNQIGLVQQDNILF-SD------TVKENILLGRPT--AT----DEEVVEAAKMANAHDFIMN----LPQGYDT--- 146 (255)
T ss_dssp HHHHHHTEEEECSSCCCC-SS------BHHHHHGGGCSS--CC----HHHHHHHHHHTTCHHHHHT----STTGGGC---
T ss_pred HHHhhheeeeeeccccCC-CC------CHHHHHhccCcC--CC----HHHHHHHHHHhCCHHHHHh----ccccccc---
Confidence 445667899999998877 35 899999998311 11 2234455666665431000 0000000
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.-......+|+|++|+++|
T Consensus 147 -------------------------------------------------------------~i~~~g~~LSgGq~QRi~i 165 (255)
T d2hyda1 147 -------------------------------------------------------------EVGERGVKLSGGQKQRLSI 165 (255)
T ss_dssp -------------------------------------------------------------BCCGGGTTSCHHHHHHHHH
T ss_pred -------------------------------------------------------------hhcCCCCCcCHHHHHHHHH
Confidence 0011234689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.+-+..... .+.+.|.+..+ ++|+++.+|++... ....++.++
T Consensus 166 ARal~~------~p~ililDEpts~LD~~t~~-----------~i~~~l~~l~~-~~TvI~itH~~~~~--~~~D~ii~l 225 (255)
T d2hyda1 166 ARIFLN------NPPILILDEATSALDLESES-----------IIQEALDVLSK-DRTTLIVAHRLSTI--THADKIVVI 225 (255)
T ss_dssp HHHHHH------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHTT-TSEEEEECSSGGGT--TTCSEEEEE
T ss_pred HHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHH--HhCCEEEEE
Confidence 999998 99999999997765544432 55555555443 78999999987754 346777777
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 226 ~ 226 (255)
T d2hyda1 226 E 226 (255)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=2.2e-25 Score=216.96 Aligned_cols=202 Identities=14% Similarity=0.193 Sum_probs=144.2
Q ss_pred CCceeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+|+||+++|+++ ++|+||||+| ||+||||||||||+++| +..|..|+|+ ++|. .+....
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~---i~g~----~i~~~~ 83 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---MDGH----DLREYT 83 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE---ETTE----ETTTBC
T ss_pred ceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEE---ECCc----ccchhh
Confidence 4579999999999754 5999999999 99999999999999999 4467889999 8888 333333
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++..++||+|++.++.. |+.+|+.++... .... +.+..++...++..
T Consensus 84 ~~~~r~~i~~v~Q~~~l~~~-------ti~~n~~~~~~~-~~~~----~~i~~a~~~~~l~~------------------ 133 (253)
T d3b60a1 84 LASLRNQVALVSQNVHLFND-------TVANNIAYARTE-EYSR----EQIEEAARMAYAMD------------------ 133 (253)
T ss_dssp HHHHHHTEEEECSSCCCCSS-------BHHHHHHTTTTS-CCCH----HHHHHHHHTTTCHH------------------
T ss_pred hhhhhheEEEEeeccccCCc-------chhhhhhhcCcc-cCCH----HHHHHHHHHHhHHH------------------
Confidence 44556679999999988743 688999887322 1121 22333344333321
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc--ccccCCCCCCCCCCCCCCcce
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~--~~~~~~~~~~~~ls~g~~q~v 304 (541)
+++.|- ... .....+..+|+||+|++
T Consensus 134 ---------------------------------------------------~i~~l~~gl~t-~~~~~~~~LSGGqkQRv 161 (253)
T d3b60a1 134 ---------------------------------------------------FINKMDNGLDT-IIGENGVLLSGGQRQRI 161 (253)
T ss_dssp ---------------------------------------------------HHHHSTTGGGS-BCCTTSCSSCHHHHHHH
T ss_pred ---------------------------------------------------HHHhccccchh-hhcCCCCCcCHHHHHHH
Confidence 122211 011 11234567999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+||++++. +++++|+|||+.+-+..+.. .+.+.|.+..+ ++|+++.+|++.... ...+|.
T Consensus 162 aiARal~~------~p~ililDEpts~LD~~~~~-----------~i~~~l~~l~~-~~Tvi~itH~l~~~~--~~D~v~ 221 (253)
T d3b60a1 162 AIARALLR------DSPILILDEATSALDTESER-----------AIQAALDELQK-NRTSLVIAHRLSTIE--QADEIV 221 (253)
T ss_dssp HHHHHHHH------CCSEEEEETTTSSCCHHHHH-----------HHHHHHHHHHT-TSEEEEECSCGGGTT--TCSEEE
T ss_pred HHHHHHhc------CCCEEEeccccccCCHHHHH-----------HHHHHHHHhcc-CCEEEEEECCHHHHH--hCCEEE
Confidence 99999998 99999999998876655543 55566665543 789999999987543 467777
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 222 vl~ 224 (253)
T d3b60a1 222 VVE 224 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.85 E-value=7.4e-23 Score=192.38 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=112.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||++.|+ ++||++|||+| ||+|||||||||||++|++ .|.+|+|. ++|..+ . ..
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~---~~g~~i----~-----~~ 68 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII---YNGVPI----T-----KV 68 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEG----G-----GG
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEE---ECCEeh----h-----Hh
Confidence 478999999996 57999999999 9999999999999999954 68899999 888722 1 23
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+..++|++|+..+...+ |+.+++.+.....+. ......+..+++.+++.+
T Consensus 69 ~~~i~~~~~~~~~~~~~------t~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~---------------------- 118 (200)
T d1sgwa_ 69 KGKIFFLPEEIIVPRKI------SVEDYLKAVASLYGV--KVNKNEIMDALESVEVLD---------------------- 118 (200)
T ss_dssp GGGEEEECSSCCCCTTS------BHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCC----------------------
T ss_pred cCcEEEEeecccCCCCc------CHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCcc----------------------
Confidence 45789999999888888 888887654111110 001112223333333211
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+ .+.+..+|+|++|++.|++++
T Consensus 119 ---------------------------------------------------------~-~~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 119 ---------------------------------------------------------L-KKKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp ---------------------------------------------------------T-TSBGGGSCHHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------c-ccccCcCCCcHHHHHHHHHHH
Confidence 0 122345899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchh
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEE 338 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~ 338 (541)
+. +++++|+|||..|-+.....
T Consensus 141 ~~------~~~llllDEPt~gLD~~~~~ 162 (200)
T d1sgwa_ 141 LV------NAEIYVLDDPVVAIDEDSKH 162 (200)
T ss_dssp TS------CCSEEEEESTTTTSCTTTHH
T ss_pred hc------CCCEEEEcCcccccCHHHHH
Confidence 88 99999999998887766653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=9e-22 Score=188.91 Aligned_cols=195 Identities=11% Similarity=0.090 Sum_probs=134.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceeccccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.++++|++++| +|++|||+| ||+|||||||||||++|+| .+..|+|. ++|+ .+........+
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~---~~g~----~i~~~~~~~~~ 71 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQ---FAGQ----PLEAWSATKLA 71 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEE---ESSS----BGGGSCHHHHH
T ss_pred EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEE---ECCE----ECCcCCHHHHH
Confidence 47889988765 699999999 9999999999999999944 35679999 8888 33333333444
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
...+|++|........ ++.+++.++... ....+.+++++..+++..
T Consensus 72 ~~~~~~~~~~~~~~~~------~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~----------------------- 117 (231)
T d1l7vc_ 72 LHRAYLSQQQTPPFAT------PVWHYLTLHQHD-----KTRTELLNDVAGALALDD----------------------- 117 (231)
T ss_dssp HHEEEECSCCCCCSSC------BHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTT-----------------------
T ss_pred hhceeeeccccCCccc------cHHHHhhhccch-----hhHHHHHHHHHHhcCCHh-----------------------
Confidence 5679999987655445 667666654211 122234445555555432
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 118 --------------------------------------------------------~~~~~~~~LSgG~~Qrv~iA~al~ 141 (231)
T d1l7vc_ 118 --------------------------------------------------------KLGRSTNQLSGGEWQRVRLAAVVL 141 (231)
T ss_dssp --------------------------------------------------------TTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------HhCcChhhcCHHHHHHHHHHHHHH
Confidence 122345568999999999999875
Q ss_pred Eeee-cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEE-RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e-~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+.- ...+|+|+|+|||..|-+..... .+.+.+.+..+.+.++++.+|+++... .++.++.++
T Consensus 142 ~~~p~~~p~p~llllDEPt~gLD~~~~~-----------~i~~~i~~l~~~g~tii~vtHdl~~~~-~~~dri~vl 205 (231)
T d1l7vc_ 142 QITPQANPAGQLLLLDEPMNSLDVAQQS-----------ALDKILSALCQQGLAIVMSSHDLNHTL-RHAHRAWLL 205 (231)
T ss_dssp HHCTTTCTTCCEEEESSCSTTCCHHHHH-----------HHHHHHHHHHHTTCEEEECCCCHHHHH-HHCSBCCBE
T ss_pred hhCcccCCCCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HHCCEEEEE
Confidence 3211 11246899999998887765553 666777777777899999999987533 355666555
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=2.1e-21 Score=191.40 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=121.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.|+++++ .+++||+||||+| ||+|||||||||||++|+| .+..|.|. ++|+
T Consensus 37 ~~i~~~~~~~--~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~---~~g~------------- 98 (281)
T d1r0wa_ 37 NNVSFSHLCL--VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK---HSGR------------- 98 (281)
T ss_dssp ---CHHHHHH--TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE---CCSC-------------
T ss_pred CcEEEEEcCC--CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEE---ECCE-------------
Confidence 3556666554 5678999999999 9999999999999999955 46677777 5553
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++||+|+..+++ . |++||+.|+..... . ....++..+++.. .+..+.
T Consensus 99 ----i~~v~Q~~~l~~-~------tv~eni~~~~~~~~---~----~~~~~~~~~~~~~--------~i~~l~------- 145 (281)
T d1r0wa_ 99 ----VSFCSQFSWIMP-G------TIKENIIFGVSYDE---Y----RYKSVVKACQLQQ--------DITKFA------- 145 (281)
T ss_dssp ----EEEECSSCCCCS-E------EHHHHHTTTSCCCH---H----HHHHHHHHTTCHH--------HHTTST-------
T ss_pred ----EEEEeccccccC-c------eeeccccccccccc---h----HHHHHHHHHHhHH--------HHHhch-------
Confidence 799999988875 3 79999998732111 1 1122222222210 000000
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
++ .++ ........+|+|++|+++|+++
T Consensus 146 -----------------------------~~------------------~~~------~~~~~~~~LSgGqkQRv~lARa 172 (281)
T d1r0wa_ 146 -----------------------------EQ------------------DNT------VLGEGGVTLSGGQRARISLARA 172 (281)
T ss_dssp -----------------------------TG------------------GGC------EECTTCTTSCHHHHHHHHHHHH
T ss_pred -----------------------------hh------------------hhh------hhhhhccCCCHHHHHHHHHHHH
Confidence 00 000 0112234689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++|+|+|||+.+-+..... ++.+.+..+...++++++.+|+++.. +.+.++.++.
T Consensus 173 L~~------~p~illLDEPts~LD~~~~~-----------~i~~~~~~~~~~~~tvi~itH~~~~l--~~aDrI~vl~ 231 (281)
T d1r0wa_ 173 VYK------DADLYLLDSPFGYLDVFTEE-----------QVFESCVCKLMANKTRILVTSKMEHL--RKADKILILH 231 (281)
T ss_dssp HHS------CCSEEEEESCCCSSCHHHHH-----------HHHHHCCCCCTTTSEEEEECSCHHHH--HTCSEEEEEE
T ss_pred HHh------CccchhhcCccccCCHHHHH-----------HHHHHHHHHhhCCCEEEEEechHHHH--HhCCEEEEEE
Confidence 999 99999999998775543322 34333334445678999999987543 4578888774
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.99 E-value=3.4e-06 Score=80.42 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=41.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.++|+++|.+|+||||++|+|++.+...-.. +.+ .|........ ..+ ...+.|+||||+++..
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~----~~~--~T~~~~~~~~--~~~--g~~i~viDTPGl~~~~ 94 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISP----FQS--EGPRPVMVSR--SRA--GFTLNIIDTPGLIEGG 94 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCS----SSC--CCSSCEEEEE--EET--TEEEEEEECCCSEETT
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCceeecC----CCC--cceeEEEEEE--Eec--cEEEEEEeeecccCCc
Confidence 5799999999999999999999876443211 111 1211122221 223 3579999999998753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=1.3e-05 Score=81.14 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
-.+++.++|++|+|||||+|+|++.......... ++-...|..+.... ..-.+.+.++||||+|...
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~--~g~~~tT~~~~~~~-----~~~~~~~~l~DtPG~~~~~ 121 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK--TGVVEVTMERHPYK-----HPNIPNVVFWDLPGIGSTN 121 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC--CCC----CCCEEEE-----CSSCTTEEEEECCCGGGSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCC--CCCCCCceeeeeee-----ccCCCeEEEEeCCCccccc
Confidence 4578999999999999999999876532222111 11111122222211 1124568899999998653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.77 E-value=2e-05 Score=70.03 Aligned_cols=59 Identities=31% Similarity=0.465 Sum_probs=37.3
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+++++|.+|+|||||+|+|++....- +.....|..+.. +. ...+.++||||+|......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~-------~~~~g~T~~~~~--~~------~~~~~ivDtpG~~~~~~~~ 60 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRR-------GKRPGVTRKIIE--IE------WKNHKIIDMPGFGFMMGLP 60 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSS-------SSSTTCTTSCEE--EE------ETTEEEEECCCBSCCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-------eCCCCEeecccc--cc------cccceecccCCceeccccc
Confidence 58899999999999999998765211 111111222221 11 2245789999998775543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=4.8e-06 Score=77.21 Aligned_cols=63 Identities=32% Similarity=0.372 Sum_probs=36.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.+++|.||+|||||||.|..........+....+..++|+. .+.++.+..+ -.|+||||+-.
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt-~~~l~~l~~g-----g~iiDTPG~r~ 159 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT-TAQLLKFDFG-----GYVVDTPGFAN 159 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC-SCCEEECTTS-----CEEESSCSSTT
T ss_pred eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCcccc-ceeEEEECCC-----cEEEeCCcccc
Confidence 568899999999999999987654444333333333444443 3334444333 48999999853
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.70 E-value=4e-06 Score=74.35 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=22.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
|+|+||||||||||+++|++ .+..|.+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~ 32 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFW 32 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEE
Confidence 58999999999999999944 44556665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.44 E-value=2e-05 Score=73.24 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=30.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.+++|.||+|||||||.|..........+....+..++|+.- +.++.+ .+| .|+||||+-.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~-~~l~~~-~gg-----~iiDTPG~r~ 160 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH-VELIHT-SGG-----LVADTPGFSS 160 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCC-CCEEEE-TTE-----EEESSCSCSS
T ss_pred eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeee-EEEEec-CCC-----EEEECCcccc
Confidence 3468899999999999999876544443343333344444432 333332 222 5889999954
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.35 E-value=0.00017 Score=63.76 Aligned_cols=62 Identities=27% Similarity=0.421 Sum_probs=38.1
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
++.++|.+|+|||||+|+|++...... +.....+....... .... ..++.++||||+.....
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~~~~~------~~~~~tt~~~~~~~--~~~~--~~~~~~~DtpG~~~~~~ 68 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVKVAPI------SPRPQTTRKRLRGI--LTEG--RRQIVFVDTPGLHKPMD 68 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCC------CSSSCCCCSCEEEE--EEET--TEEEEEEECCCCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee------cccCCcccccccce--eeee--eeeeeeccccccccccc
Confidence 588999999999999999987653221 11111111111111 1112 46789999999976543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=9.7e-05 Score=64.54 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=39.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||+++|.... +.... ..++........+.-+|.+.++.|+||||-
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~-~~~~~--------~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~ 61 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDK-FNPSF--------ITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC-CCC---------------CCEEEEEEESSSCEEEEEEECCTTG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCCcc--------CCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 678999999999999999998654 22211 123333333344555677899999999984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.31 E-value=0.00015 Score=64.24 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=35.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
++.++|.+|+|||||+|+|++........ .......++. .....-..++.++||||+...
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~---~~~t~~~~~~-------~~~~~~~~~~~~~DtpG~~~~ 62 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY---PFTTLSPNLG-------VVEVSEEERFTLADIPGIIEG 62 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCC---TTCSSCCEEE-------EEECSSSCEEEEEECCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecc---CCCceeeeec-------eeeecCCCeEEEcCCCeeecC
Confidence 46789999999999999998765321111 1111111111 111222456889999998653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=0.00021 Score=62.64 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.++++|.+|+|||||+++|..... .... ..+..+......+...+...++.++||||.
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~ 64 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSF-TPAF--------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSC--------CCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCC-Cccc--------ccccccceeeEEEEeecceEEEEEEECCCc
Confidence 36799999999999999999876542 2111 112223333344445566788999999994
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00011 Score=64.76 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=42.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.|.++++|.+|+|||||+++|..... ... ...|+.+......+..+|....+.+.|+||.
T Consensus 2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f-~~~--------~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~ 62 (170)
T d1i2ma_ 2 VQFKLVLVGDGGTGKTTFVKRHLTGEF-EKK--------YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62 (170)
T ss_dssp EEEEEEEEECTTSSHHHHHHTTC------CC--------EEEETTEEEEEEEECBTTCCEEEEEEECTTH
T ss_pred eeEEEEEECCCCcCHHHHHHHHHhCCC-Ccc--------cccceeccccccccccccccccccccccccc
Confidence 568999999999999999999876542 211 1234445555555666788899999999974
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=0.00018 Score=64.71 Aligned_cols=61 Identities=30% Similarity=0.492 Sum_probs=41.6
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.|.++|+|.+|+|||||+++|.... +..... .+.........+.-+|....+.|+||||.
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~-~~~~~~--------~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~ 65 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYI--------STIGVDFKIKTVELDGKTVKLQIWDTAGQ 65 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCC--------CSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCC-CCCCcC--------CccceeEEEEEEEEeeEEEEEEEEECCCc
Confidence 45789999999999999999998654 222211 12222223334445677899999999995
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00027 Score=61.84 Aligned_cols=62 Identities=29% Similarity=0.439 Sum_probs=42.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.|.++++|.+|+|||||++.+.......... ..+.........+.-+|...+|.|+||||.
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 66 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF--------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC--------CCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccc--------cceeeeeeEEEEEEecCcEEEEEEEECCCc
Confidence 35789999999999999999987654222211 112223333444556777899999999985
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00027 Score=61.89 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.++++|.+|+|||||++.|..... .....+ ..+..+.. ..+.-++...++.++||||-
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f-~~~~~~------~~~~~~~~--~~~~~~~~~~~l~i~Dt~G~ 64 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGA------TIGVDFMI--KTVEINGEKVKLQIWDTAGQ 64 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCC------CCSEEEEE--EEEEETTEEEEEEEEEECCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CCcccc------cccceEEE--EEEEECCEEEEEEEEECCCc
Confidence 47899999999999999999986542 221111 11222222 23344566788999999983
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00041 Score=61.10 Aligned_cols=59 Identities=29% Similarity=0.443 Sum_probs=39.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|.+|+||||||++|..... ..... .+.........+.-++...++.++||||.
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTF-DPELA--------ATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCC--------CCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CCccc--------cceeecceeEEEEEeccccEEEEEECCCc
Confidence 6799999999999999999876542 22111 11222222223445667889999999985
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00041 Score=60.36 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=40.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.++++|.+|+|||||+++|.... +.....+ +.........+.-+|...++.+.|+||-
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~D~~g~ 63 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPH--------TIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCSSCTT--------SCCCCEEEEEEEETTEEEEEEEEECTTG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC-CCCcccc--------cccccceeEEEEECCEEEEEEEeccCCc
Confidence 3789999999999999999998654 2222211 1111222333455677889999999984
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00054 Score=58.97 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=39.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
|.+.++|.+|+|||||+|+|...+...... ..+....++.. .+... ...+.++|+||+.+....
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~---~~~~~~~~~~~-----~~~~~--~~~~~~~d~~g~~~~~~~ 65 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTD---IAGTTRDVLRE-----HIHID--GMPLHIIDTAGLREASDE 65 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCS---STTCCCSCEEE-----EEEET--TEEEEEEECCCCSCCSSH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeec---ccccccceEee-----eeecc--Cceeeecccccccccccc
Confidence 578999999999999999998765321111 11112222211 11122 457889999999876443
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00034 Score=61.88 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=35.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.|++.++|.+|+|||||+|+|++......... ...+....... +..+ ...+.++|+||++...
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~------~~t~~~~~~~~--~~~~--~~~~~~~d~~g~~~~~ 70 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPI------PGTTRDPVDDE--VFID--GRKYVFVDTAGLRRKS 70 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCC------C------CCEE--EEET--TEEEEESSCSCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcceeecc------cccccccceee--eccC--CceeeeeccCCccccc
Confidence 36799999999999999999987653211111 11111111111 1222 3568899999987543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0064 Score=52.57 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=41.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+.++++|.+|+|||+|++++.... +.+.+.+ |+.... ...+..+|-..++.|.|++|.-.
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~-f~~~~~p--------Ti~~~~-~~~~~~~~~~~~l~i~D~~g~~~ 62 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKR-FIWEYDP--------TLESTY-RHQATIDDEVVSMEILDTAGQED 62 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC-CCSCCCT--------TCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCCccCC--------ceeccc-cccccccccceEEEEeecccccc
Confidence 4678999999999999999998765 3332222 222221 22334567789999999998643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00058 Score=59.82 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=42.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.++++|.+|+|||||+++|..... .... .++.........+..++....+.+.|+||.
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKF-KDDS--------NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTC--------CCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-Cccc--------ccccccceeeEEEEecCcceeEEEEECCCc
Confidence 36799999999999999999876542 2211 223344444444556677889999999983
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.97 E-value=0.00045 Score=59.96 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=43.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+.++++|.+|+|||||+|+|...... ... ..++........+..++....+.+.|++|...
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~-~~~--------~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 63 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFT-KDY--------KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CCS--------SCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCC-ccc--------ccccccccceeeeeecCceeeeeeeccCCccc
Confidence 467899999999999999998865422 111 22333334445556677889999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.97 E-value=0.00018 Score=65.52 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=40.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCC--CC------CCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRK--VP------NVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~--~~------~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+|+.++|..+.|||||++.|....-..... .. .......+.++|..+.+.++-++ .+++++||||+-|
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d 79 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD 79 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence 589999999999999999985211000000 00 00011122344555555554444 5788999999864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.96 E-value=0.0002 Score=63.03 Aligned_cols=59 Identities=29% Similarity=0.468 Sum_probs=28.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||+++|.... +.+ ....++........++-+|....+.++|+||.
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~-~~~--------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 65 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDA-FNS--------TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65 (173)
T ss_dssp EEEEEECCCCC-------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCC--------ccCccccceEEEEEEEECCEEEEEEEEECCCc
Confidence 679999999999999999987543 111 11233444444445556777899999999984
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00015 Score=62.83 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=17.1
Q ss_pred EEEcCCCCCHHHHHHHHh
Q psy91 103 MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~ 120 (541)
+|+|++|||||||++.|+
T Consensus 6 ~itG~~GSGKTTL~~~L~ 23 (170)
T d1np6a_ 6 AFAAWSGTGKTTLLKKLI 23 (170)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 899999999999999994
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.00036 Score=60.03 Aligned_cols=61 Identities=28% Similarity=0.443 Sum_probs=37.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.+.++|.+|+|||||+|+|.+.........+ +....... .....+ ...+.++||||+...
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~---~~~~~~~~-----~~~~~~--~~~~~~~Dt~G~~~~ 61 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP---GTTRDVIS-----EEIVIR--GILFRIVDTAGVRSE 61 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS---CCSSCSCC-----EEEEET--TEEEEEEESSCCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccc---ccccccee-----EEEEeC--CeeEEeccccccccC
Confidence 36889999999999999999877533221111 11111111 111122 456888999997654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.00059 Score=59.09 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=41.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||+++|..... .... ..++...........++....+.+.|++|.
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 59 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSF-DNTY--------QATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 59 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC-CSSC--------CCCCSEEEEEEEEECSSCEEEEEEEEECCS
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCC-CCcc--------ccceeeeccceeeccCCCceeeeecccCCc
Confidence 5789999999999999999886552 2221 122333444444455677899999999985
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00084 Score=58.51 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=43.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..|.++++|.+|+|||||+++|.... +.+... .+.........+..++....+.+.|+||.-
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~-f~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 66 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQ-FHEFQE--------STIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCTTCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCC-CCcccc--------cccccccccceeeccceEEEEEeccCCCch
Confidence 36889999999999999999998654 222221 223333344455567778999999999853
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00077 Score=58.59 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=43.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..|.++++|.+|+|||||++++.... +.+... .+.........+..+|....+.+.|++|.-
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~-f~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 63 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHI--------TTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCC--------CCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCC-CCcccc--------cccccchheeeeccCCccceeeeeccCCcc
Confidence 35789999999999999999987654 222221 223333344455667778999999999864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.80 E-value=0.00082 Score=59.42 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=44.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-|.++|+|.+|+|||||+++|..... .... ..|+..........-.+....+.+.|+||.-.
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 63 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQY--------KATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CSSC--------CCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CCCc--------CCccceeeeeeeeeeCCceEEEEeeecCCccc
Confidence 47899999999999999999986552 2211 22344444455555667788999999998643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00079 Score=58.67 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=35.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||++.+..... ... . +.........+.-+|....|.+.|+||-
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~-~~~-~---------~~~~~~~~~~i~~~~~~~~l~i~D~~g~ 58 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVED-GPE-A---------EAAGHTYDRSIVVDGEEASLMVYDIWEQ 58 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC--------------------CEEEEEEEEETTEEEEEEEEECC--
T ss_pred eEEEEECCCCcCHHHHHHHHhCCcc-CCc-C---------Ceeeeeecceeeccccccceeeeecccc
Confidence 6799999999999999999876541 111 0 1111112223444677899999999985
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=6.4e-05 Score=66.96 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=20.4
Q ss_pred eecceEEE-----EEEcCCCCCHHHHHHHH
Q psy91 95 KKGFDFTL-----MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 95 L~~isl~i-----aIiGpSGsGKSTLL~~L 119 (541)
+++.++.+ +|+|||||||||+|.+|
T Consensus 15 ~~~~~i~f~~~~tvi~G~NGsGKStil~Ai 44 (222)
T d1qhla_ 15 FFARTFDLDELVTTLSGGNGAGKSTTMAAF 44 (222)
T ss_dssp EEEEEECHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred EeeEEEEcCCCeEEEECCCCCCHHHHHHHH
Confidence 34444444 89999999999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00097 Score=58.45 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.++++|.+|+|||||++++..... .....+ +.........+.-++....+.|.|+||-
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKS--------TIGVEFATRSIQVDGKTIKAQIWDTAGQ 63 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---C--------CCSCEEEEEEEEETTEEEEEEEEECSSG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CCcccc--------cccceeeeEEEEECCEEEEEEecccCCc
Confidence 36799999999999999999876542 221111 1112222333445677889999999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.65 E-value=0.00048 Score=59.87 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=19.8
Q ss_pred eEEE-EEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTL-MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~i-aIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.+ +|+||+||||||+.+.|+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445 89999999999999999543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.63 E-value=0.00048 Score=65.49 Aligned_cols=59 Identities=32% Similarity=0.444 Sum_probs=36.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++++|+|.+++|||||||+|........ +.....|..+... . ...++.++||||....
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~------~~~pG~Tr~~~~i--~-----~~~~~~l~DTPGi~~p 170 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAKT------GDRPGITTSQQWV--K-----VGKELELLDTPGILWP 170 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------------CCE--E-----ETTTEEEEECCCCCCS
T ss_pred ceEEEEEecCccchhhhhhhhhccceEEE------CCcccccccceEE--E-----CCCCeEEecCCCcccc
Confidence 46899999999999999999987653221 1111222222111 1 1467999999998754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.00045 Score=63.55 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=18.2
Q ss_pred EEEcCCCCCHHHHHHHHhcC
Q psy91 103 MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~ 122 (541)
+++|+||+|||||+|.|.+.
T Consensus 99 ~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 99 TMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp EEECSTTSSHHHHHHHHSTT
T ss_pred EEECCCCCCHHHHHHhhcch
Confidence 89999999999999999543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0023 Score=55.57 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=40.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.|.++++|.+|+|||||+++|.... +.+...+ |+.... .....-++....+.+.|++|.-.
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~-f~~~~~~--------T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~ 62 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGT-FRESYIP--------TVEDTY-RQVISCDKSICTLQITDTTGSHQ 62 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC-CCSSCCC--------CSCEEE-EEEEEETTEEEEEEEEECCSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCC-CCCccCc--------ceeecc-ccceeeccccceecccccccccc
Confidence 4789999999999999999998654 2222222 222111 12233456678899999998653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.58 E-value=0.0005 Score=60.95 Aligned_cols=19 Identities=47% Similarity=0.518 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy91 101 TLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L 119 (541)
.|||-||+|||||||.+.|
T Consensus 24 iIgI~G~~GSGKSTla~~L 42 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQL 42 (198)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4599999999999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.58 E-value=0.0016 Score=56.44 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=41.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||++.|...... .. ...+............++....+.+.|++|.
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~-~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFD-PN--------INPTIGASFMTKTVQYQNELHKFLIWDTAGL 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-TT--------CCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCC-cc--------cccccccccccccccccccccceeeeecCCc
Confidence 367899999999999999999876532 21 1223333444444556667888899999975
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0018 Score=56.10 Aligned_cols=60 Identities=28% Similarity=0.407 Sum_probs=41.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.|.++++|.+|+|||||+|+|.... +.+.. ..++.... ...+..+|....+.+.|+||..
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~-~~~~~--------~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~ 62 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEY--------DPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCCSC--------CCCSEEEE-EEEEEETTEEEEEEEEEECCCG
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCcc--------CCccceee-ccceeeeceeeeeeeeeccCcc
Confidence 3789999999999999999998755 22221 12222222 2334556778999999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.0024 Score=55.26 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=40.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.|.++++|.+|+|||||++++.... +.....+. +. ......+.-++....+.+.|++|..
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~~t--------~~-~~~~~~~~~~~~~~~l~~~d~~g~~ 62 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGT-FIEKYDPT--------IE-DFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCSCCCTT--------CC-EEEEEEEEETTEEEEEEEEECCCTT
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC-CCCccCCc--------ee-eeeeeeeecCcceEeeccccCCCcc
Confidence 4789999999999999999998654 22222111 11 1222233446678899999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.54 E-value=0.00045 Score=61.26 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=17.3
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|..
T Consensus 6 vl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 6 VLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 7999999999999999943
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.0017 Score=56.63 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=40.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-|.++|+|.+|+|||||+|+|..... .... ..++........+..++....+.+.|++|..
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 66 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVTNKF-DTQL--------FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CC------------CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCcc--------ccceeeeeeeeeeeecCceeeEeeecccCcc
Confidence 47899999999999999999976542 2111 1122223333344556778899999999864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.0018 Score=56.26 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=40.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.+.++|.+|+|||||++++..... .+... .+.........+..++...++.|.|++|.
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f-~~~~~--------~t~~~~~~~~~i~~~~~~~~l~i~d~~g~ 62 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDF-AENKE--------PTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Ccccc--------ccccceeeccccccccccccccccccCCc
Confidence 5788999999999999999886652 22221 12222223334556777899999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00064 Score=60.03 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
++.|||+|.+|+|||||++.|++.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 467899999999999999999764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.52 E-value=0.0016 Score=56.17 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=35.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+|+|||||+|.|..... . .. ..|..+... .++.+ ...+.++|+||.
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~-~~--------~~t~~~~~~--~~~~~--~~~~~~~D~~G~ 56 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDV-D-TI--------SPTLGFNIK--TLEHR--GFKLNIWDVGGQ 56 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC-S-SC--------CCCSSEEEE--EEEET--TEEEEEEEECCS
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCC-C-cc--------cceEeeeee--ecccc--ccceeeeecCcc
Confidence 36799999999999999999876542 1 11 112222222 22333 467889999983
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00051 Score=63.58 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC---CCCCCCeeEeeccc-hhhhhhhhhccceeeEeccCCcch
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG---SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLG 274 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~---~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~sg~G 274 (541)
+.++|.+|+||||+++.++|+.++..+.+...+... ...++.|||++|.+ ++...++.+++.|.....|.+..-
T Consensus 29 ~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 106 (232)
T d2awna2 29 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 106 (232)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CH
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHH
Confidence 457899999999999999999998877664333221 22346799999998 888999999999987777655443
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00068 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45699999999999999999754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.47 E-value=0.00061 Score=59.94 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+|+|+|++|||||||+|.|.+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00045 Score=60.29 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||+|||||||.+.|+.
T Consensus 10 I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999944
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.44 E-value=0.0014 Score=58.47 Aligned_cols=66 Identities=29% Similarity=0.446 Sum_probs=37.4
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhh
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWR 341 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~ 341 (541)
.+.++|.+|+|||||+|+|.+..... ..+.....+..+.... +...+.++|+++.|........+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~~~-----~~~~~~~~t~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~ 90 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKNLA-----RTSSKPGKTQTLNFYI-------INDELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC------------------CCEEEEE-------ETTTEEEEECCCBCCCSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHhcCCCceE-----Eeecccceeeeccccc-------ccccceEEEEEeeccccccccccc
Confidence 58899999999999999998754211 1122222222222221 245677899998877655554443
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.0025 Score=55.57 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=41.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.|.++++|.+|+|||||+++|.... +.....+. .... ....+.-+|....+.++|++|.-+.
T Consensus 6 ~~Kv~lvG~~~vGKTsLi~r~~~~~-f~~~~~~t-------~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~ 67 (173)
T d2fn4a1 6 THKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPT-------IEDS--YTKICSVDGIPARLDILDTAGQEEF 67 (173)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTT-------CCEE--EEEEEEETTEEEEEEEEECCCTTTT
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCC-CCcccccc-------cccc--eeeEeccCCeeeeeecccccccccc
Confidence 3679999999999999999988655 22222111 1111 1223344677889999999987543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00074 Score=67.38 Aligned_cols=17 Identities=29% Similarity=0.771 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||+|.+|
T Consensus 29 ~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 29 SIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 69999999999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.0018 Score=56.41 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=34.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|.++++|.+|+|||||+++|...... ....+.. +. ... .......++....+.+.|+||.-
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~-~~~~~t~--~~--~~~---~~~~~~~~~~~~~~~~~d~~g~~ 63 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATI--GA--DFL---TKEVTVDGDKVATMQVWDTAGQE 63 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-TTC---C--CC--SCE---EEEECCSSSCCEEEEEECCC---
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCC-CccCccc--cc--cee---eeeeeecCcccccceeeccCCch
Confidence 57899999999999999999865522 2221111 10 110 01111123345678899999854
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0016 Score=56.79 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=38.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.++|+|.+|+||||||+++..... .....+ +.............+....+.+.|++|.
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 62 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDL--------TIGVEFGARMVNIDGKQIKLQIWDTAGQ 62 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC-------------CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCC-CCCccc--------ceeeccceeeeeeeeeEEEEEeecccCc
Confidence 36899999999999999999876542 221111 1111122223334566789999999975
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.40 E-value=0.00092 Score=58.75 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
++.|+|+|.+|+|||||++.|++..
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999997643
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00065 Score=59.08 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=16.3
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|++|||||||++.|
T Consensus 5 ~I~G~~gSGKTTli~~l 21 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKW 21 (165)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 89999999999999888
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.00099 Score=59.75 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+|+|+|++|||||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0024 Score=56.45 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=41.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..|.++++|.+|+|||||++.|.... +.+...+.. . ......+.-+|...++.+.|++|-.
T Consensus 8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~~Ti--------~-~~~~~~~~~~~~~~~l~i~D~~g~e 68 (185)
T d2atxa1 8 LMLKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTV--------F-DHYAVSVTVGGKQYLLGLYDTAGQE 68 (185)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSS--------C-CCEEEEEESSSCEEEEEEECCCCSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCce--------e-eeeeEEEeeCCceEEeecccccccc
Confidence 45789999999999999999988655 333322221 1 1112233445668899999999864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.0032 Score=54.63 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=38.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
|.++++|.+|+||||||+++..... .....+. .. ......+.-+|....+.++|++|..+.
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t--------~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~ 66 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYF-VTDYDPT--------IE-DSYTKQCVIDDRAARLDILDTAGQEEF 66 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-CSSCCTT--------CC-EEEEEEEEETTEEEEEEEEECC----C
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCcc--------cc-cceeeeeeecccccccccccccccccc
Confidence 6899999999999999999986552 2222111 11 112223344677889999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.33 E-value=0.00073 Score=58.40 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||+||||||+.+.|+.
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999943
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.32 E-value=0.00055 Score=60.54 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred eeEeccCCcchhHHHHhhhcccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.++|.+|+|||||+|+|.+..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0025 Score=55.11 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=40.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.++++|.+|+|||||+++|.... +.+...+ ++... ....+.-+|....+.+.|++|...
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~-f~~~~~~--------t~~~~-~~~~~~~~~~~~~l~i~d~~g~~~ 64 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDP--------TIENT-FTKLITVNGQEYHLQLVDTAGQDE 64 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-CCSCCCS--------SCCEE-EEEEEEETTEEEEEEEEECCCCCT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-CCcccCc--------ceecc-cceEEecCcEEEEeeecccccccc
Confidence 468999999999999999987654 2222211 22111 122344567789999999997654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.31 E-value=0.0013 Score=56.33 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.+.+.
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 34699999999999999999554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.00077 Score=60.00 Aligned_cols=20 Identities=50% Similarity=0.851 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||++.|+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999943
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.28 E-value=0.001 Score=58.00 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+|+|+|++|||||||++.|++.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999999999764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.26 E-value=0.0011 Score=57.57 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|.|+|+|||||||+-+.|+
T Consensus 8 ~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 8 TIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34899999999999999994
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.00089 Score=58.23 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|.|+||+|||||||++.++
T Consensus 4 v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp EEEESCCSSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 3699999999999999994
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.22 E-value=0.00093 Score=56.72 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHh
Q psy91 103 MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~ 120 (541)
.|.||+|||||||.+.|.
T Consensus 6 ii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 6 LTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 689999999999999883
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.22 E-value=0.00093 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..|+|+|++|||||||++.|.+
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999954
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.001 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++|||||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999999999543
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.00092 Score=59.22 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||++.|+.
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999998853
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.21 E-value=0.0049 Score=53.39 Aligned_cols=60 Identities=23% Similarity=0.446 Sum_probs=38.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
|.++++|.+|+|||||++++.... +...+.+ |+... ....+.-+|....+.+.|+||..+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~-f~~~~~~--------T~~~~-~~~~~~~~~~~~~l~i~d~~g~~~ 64 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEP--------TKADS-YRKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCT--------TCCEE-EEEEEEETTEEEEEEEEECCC---
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-CCcccCC--------ccccc-cccccccccccccccccccccccc
Confidence 578999999999999999987654 2222221 22211 122334467789999999998753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.21 E-value=0.0011 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|++|||||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999954
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.00079 Score=60.42 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=34.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++++|.+|+|||||+|.|......+ + ++.......+..+ ...+.++|+||..
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~~~---------~----tt~~~~~~~~~~~--~~~~~l~D~~g~~ 57 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSVRP---------T----VVSQEPLSAADYD--GSGVTLVDFPGHV 57 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCC---------B----CCCSSCEEETTGG--GSSCEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC---------e----EEecceEEEEEeC--CeEEEEEeccccc
Confidence 478999999999999999998765211 1 1111111122222 4567899999875
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0014 Score=57.18 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|.+|+|||||+|.|.+.
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34699999999999999999764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.00095 Score=57.75 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.4
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
.|+||+||||||+.+.|+.
T Consensus 10 vl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 10 VLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 7899999999999999943
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.18 E-value=0.0032 Score=59.58 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=43.6
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCC---------CCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRK---------VPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~---------~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
|+.++|..|.|||||+..|.......++. .......+.+..+|..+...++-+ +.+++|+||||+.|..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSSSSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCchhhhH
Confidence 68899999999999999986332111110 000111234445555555555444 4679999999999876
Q ss_pred cch
Q psy91 335 NSE 337 (541)
Q Consensus 335 ~~~ 337 (541)
...
T Consensus 86 ~e~ 88 (276)
T d2bv3a2 86 IEV 88 (276)
T ss_dssp TTH
T ss_pred HHH
Confidence 654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.001 Score=56.64 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+||+||||||+-+.|+.
T Consensus 5 I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999944
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.18 E-value=0.00039 Score=64.23 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCC--CCCCee
Q psy91 103 MVVGESGLGKSTLVNSLFLSD--LYGDRK 129 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~--~~G~i~ 129 (541)
+++|+||+|||||+|.|.+.. ..|+|.
T Consensus 101 vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 101 VFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp EEEESHHHHHHHHHHHHCC----------
T ss_pred EEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 799999999999999995532 344444
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.17 E-value=0.00094 Score=59.55 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|||+|++|||||||+|.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4799999999999999999764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.16 E-value=0.0007 Score=64.81 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=16.6
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||+|++|
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 79999999999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.15 E-value=0.001 Score=57.62 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+||+||||||+.+.|+.
T Consensus 7 ~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 7 NILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 358999999999999999954
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0043 Score=54.15 Aligned_cols=60 Identities=28% Similarity=0.375 Sum_probs=39.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
...++++|.+|+|||||++.+.... +.+... .++. ......+.-++....+.|.|++|..
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~-f~~~~~--------~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~ 61 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQ-FPEVYV--------PTVF-ENYVADIEVDGKQVELALWDTAGLE 61 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCC--------CCSE-EEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC-CCCCcC--------Ccee-eeccccccccccceeeeccccCccc
Confidence 3568999999999999999988655 222221 1222 2222333445667889999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0013 Score=59.56 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|||.|++|||||||-+.|.
T Consensus 4 iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45999999999999999983
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.00091 Score=58.55 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|+++||||||+|.|.+.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.12 E-value=0.0028 Score=54.62 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=36.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+|+|||||++.|.... +..... .|+.+....+ +.+ +..+.++|+||.
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~-~~~~~~--------~T~~~~~~~~--~~~--~~~~~i~D~~G~ 57 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQ-FNEDMI--------PTVGFNMRKI--TKG--NVTIKLWDIGGQ 57 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCCSCC--------CCCSEEEEEE--EET--TEEEEEEEECCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC-CCCccc--------ccceeeeeee--eee--eEEEEEeecccc
Confidence 3678999999999999999997655 222221 2333322222 222 568899999983
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.11 E-value=0.0011 Score=59.24 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||.+.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999843
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.07 E-value=0.0016 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|++.|+++|++|+|||||++.+..
T Consensus 1 ~~iKv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 1 VAIKMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEECCCCcCHHHHHHHHHh
Confidence 466779999999999999998843
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.05 E-value=0.0017 Score=61.05 Aligned_cols=25 Identities=40% Similarity=0.708 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.+.|+|+|.+|||||||+|.|++..
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Confidence 4678999999999999999997754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0012 Score=59.86 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=17.2
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|+.
T Consensus 6 vi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 6 IVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 7999999999999999843
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.04 E-value=0.0012 Score=56.70 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|.||+||||||+.+.|+.
T Consensus 5 I~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999954
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.04 E-value=0.0065 Score=52.59 Aligned_cols=61 Identities=30% Similarity=0.335 Sum_probs=40.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.|.++++|.+|+|||||++++..... .....+ ++.. .....+.-++....+.++|++|.-.
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~-~~~~~~--------t~~~-~~~~~~~~~~~~~~~~i~d~~g~~~ 64 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIF-VPDYDP--------TIED-SYLKHTEIDNQWAILDVLDTAGQEE 64 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CTTCCT--------TCCE-EEEEEEEETTEEEEEEEEECCSCGG
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCC-CcccCc--------ceee-ccccccccccccccccccccccccc
Confidence 47899999999999999999886552 222211 1111 1122344566789999999998743
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.03 E-value=0.0028 Score=53.71 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=34.7
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++|.+|+|||||+|+|...+... .... ...... .-++....+.+.|+||..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~-~~~~-------~~~~~~------~~~~~~~~~~~~d~~g~~ 55 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPT-------IGFNVE------TVEYKNISFTVWDVGGQD 55 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-CCCC-------SSCCEE------EEECSSCEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cccc-------eeeEEE------EEeeeeEEEEEecCCCcc
Confidence 57899999999999999998765321 1110 001001 112236789999999864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0045 Score=53.84 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=38.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.|.++++|.+|+|||||++.+..........++ +..+......+.-+|....+.++|.|+.
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~--------t~~~~~~~~~~~~~~~~~~~~~~d~~~~ 63 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--------VLGEDTYERTLMVDGESATIILLDMWEN 63 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----------CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCcccccc--------ceeeecceeeeccCCceeeeeeeccccc
Confidence 3578999999999999999998765421111111 1111122222333566788899999854
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0047 Score=54.15 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=39.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+++.++|.+|+|||||++++..... .... + ...... ...+.-+|....+.|.||+|.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~-~------t~~~~~---~~~i~v~~~~~~l~i~Dt~g~ 62 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLE-K------TESEQY---KKEMLVDGQTHLVLIREEAGA 62 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCC-CCCC-C------SSCEEE---EEEEEETTEEEEEEEEECSSC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-CCcC-C------ccceeE---EEEeecCceEEEEEEeecccc
Confidence 47899999999999999999987652 2111 1 111111 122334677899999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.98 E-value=0.0017 Score=55.92 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4568999999999999999954
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.97 E-value=0.0017 Score=59.54 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||.|||||||++.|+
T Consensus 3 i~v~G~~GsGKTTLl~~ll 21 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFG 21 (244)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 4899999999999999994
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.89 E-value=0.0014 Score=57.80 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|||+|++|||||||+|.|.+.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.0034 Score=54.45 Aligned_cols=61 Identities=31% Similarity=0.326 Sum_probs=33.2
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
++.++|.+|+|||||+|.|++.....- +.....+..... ..+.. ....+.+.|+||+.+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~------~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~ 62 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIV------EDEEGVTRDPVQ--DTVEW--YGKTFKLVDTCGVFDNP 62 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------------CCSE--EEEEE--TTEEEEEEECTTTTSSG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccee------cccCceeecccc--ccccc--cccccccccccceeeee
Confidence 578999999999999999987542110 001111111111 11111 14568899999986654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.85 E-value=0.0017 Score=56.00 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=17.2
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
.|.||+||||||+.+.|+.
T Consensus 7 ~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 7 ILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 7889999999999999944
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.80 E-value=0.0065 Score=52.09 Aligned_cols=59 Identities=24% Similarity=0.496 Sum_probs=37.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||++++..... .....+ +.........+...+-...+.+.|.+|.
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEA--------TIGVDFRERAVDIDGERIKIQLWDTAGQ 61 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSSCCC--------CCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCccCc--------ccccccceeeeeeeccceEEEEEeccCc
Confidence 6789999999999999999986652 222211 1111111122333455778888999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.78 E-value=0.0019 Score=56.23 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|.|++||||||+++.|+
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999993
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.77 E-value=0.0033 Score=59.29 Aligned_cols=69 Identities=30% Similarity=0.520 Sum_probs=41.3
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC----------CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND----------RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~----------g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
|+.++|..|.|||||+..|.......++. ..... ...+..+|......++-+| .+++++||||+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~-g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERR-GRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSC-CCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhh-ccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence 67889999999999999984322111111 00000 1123345555555554454 46889999999864
Q ss_pred cc
Q psy91 334 IN 335 (541)
Q Consensus 334 ~~ 335 (541)
..
T Consensus 81 ~~ 82 (267)
T d2dy1a2 81 VG 82 (267)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.76 E-value=0.0025 Score=56.06 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|||+|..+||||||++.|.+
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 479999999999999999964
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.71 E-value=0.0041 Score=54.02 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++++|.+|+|||||++.|..... .. ...+..+.... .......+.+.|+||..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~-~~---------~~~t~~~~~~~----~~~~~~~~~i~D~~g~~ 67 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQS-VT---------TIPTVGFNVET----VTYKNVKFNVWDVGGQD 67 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCC-EE---------EEEETTEEEEE----EEETTEEEEEEEESCCG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CC---------ccceeeeeEEE----eeccceeeEEecCCCcc
Confidence 47899999999999999999875431 10 00111111111 12225788999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0084 Score=52.96 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=39.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+.++++|.+|+|||||++.+....+ .... ..|+... ......-+|....+.+.|++|..
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f-~~~~--------~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~ 62 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEY--------VPTVFDN-YAVTVMIGGEPYTLGLFDTAGQE 62 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSC--------CCCSEEE-EEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CCCc--------CCceeee-cceeEeeCCceeeeeccccccch
Confidence 5789999999999999999986552 2222 1223222 22233445667889999999864
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=95.68 E-value=0.0035 Score=56.25 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=39.6
Q ss_pred eeeEeccCCcchhHHHHhhhccccc-CCCCCC------CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL-YGDRKV------PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~-~~~~~~------~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+|+.++|.-+.|||||++.|...-. ...... ........+.++|..+.+..+-+ ...++++||||..
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~--~~~~~~iDtPGh~ 77 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--ARHYAHTDCPGHA 77 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--SCEEEEEECSSHH
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEec--eeeEEeecCcchH
Confidence 5889999999999999999853100 000000 00111223345566555544433 4678999999964
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.66 E-value=0.0042 Score=59.46 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.6
Q ss_pred eeEeccCCcchhHHHHhhhcccccCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
.+.|+|..++|||||||+|.+.++++
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP 51 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLP 51 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCC
Confidence 37899999999999999998877544
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.64 E-value=0.00076 Score=62.70 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCC--------CCCCCCCeeEeeccc-hhhhhhhhhccceeeEeccCC
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK--------GSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGES 271 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~--------~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~s 271 (541)
+.++|.+|+||||+++.++|+.++..+.+...+.. ....+++|||++|.+ .++..++.+++.|.+...|.+
T Consensus 34 ~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~ 113 (242)
T d1oxxk2 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS 113 (242)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCC
Confidence 55789999999999999999999877765432211 123356799999987 667889999998877655543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.012 Score=50.45 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=42.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.|.+.++|.+|+|||+|++++.... +.+...+ ++.. .....+..++....+.+.|++|....
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~-f~~~~~~--------t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~ 64 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGI-FVEKYDP--------TIED-SYRKQVEVDCQQCMLEILDTAGTEQF 64 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-CCCSCCC--------CSEE-EEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCccCC--------cccc-ccceeEEeeeeEEEeccccccCcccc
Confidence 3679999999999999999998665 2222221 2221 12233445666889999999987644
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.60 E-value=0.002 Score=56.56 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|||+|++|+|||||++.|.+.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.59 E-value=0.0012 Score=61.35 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=48.7
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC---CCCCCCeeEeeccc-hhhhhhhhhccceeeEeccCC
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG---SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGES 271 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~---~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~s 271 (541)
+.++|.+|+||||+++.+.|+.++..+.+...+... ....+.|||++|.. ++...++.+++.|.....|.+
T Consensus 35 ~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~ 109 (239)
T d1v43a3 35 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP 109 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCC
Confidence 557899999999999999999998776653322211 22345799999988 667889999998876666544
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.57 E-value=0.013 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.3
Q ss_pred eEeccCCcchhHHHHhhhcccc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+.++|..+.|||||+|.|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHhhc
Confidence 7789999999999999997654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0014 Score=57.91 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.|.++++|.+|+|||||+++|....
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCC
Confidence 3679999999999999999998654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0058 Score=53.61 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=38.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+|+|||||+++|....+ .....+. +. ......+.-++...++.+.|++|.
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f-~~~~~~t--------i~-~~~~~~~~~~~~~~~~~~~d~~g~ 63 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPT--------VF-DNYSANVMVDGKPVNLGLWDTAGQ 63 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCC--------SC-CEEEEEEEETTEEEEEEEECCCCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-Ccccccc--------ee-eceeeeeeccCcceEEEeeccccc
Confidence 35799999999999999999886652 2222221 11 111222334566788889998864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.55 E-value=0.0033 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|||||||++.+..
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3458999999999999999943
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.51 E-value=0.0028 Score=54.80 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 3 I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999943
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.00097 Score=57.20 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++|+|||||++.|.+.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0035 Score=54.43 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|++|||||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 458999999999999999843
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.50 E-value=0.012 Score=51.44 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=39.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
...++++|.+|+|||+|++++.... +...+.+ ++. ......+.-++....+.+.|++|..
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~-f~~~~~~--------t~~-~~~~~~~~~~~~~~~~~i~D~~g~~ 61 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDC-FPENYVP--------TVF-ENYTASFEIDTQRIELSLWDTSGSP 61 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCC--------CSE-EEEEEEEECSSCEEEEEEEEECCSG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCC-CCCccCC--------cee-ecccccccccceEEeeccccccccc
Confidence 4578999999999999999998665 2222221 111 1111223335668889999999853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0066 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.+.++|.+++|||||+|.|....
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999998754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.43 E-value=0.0034 Score=56.24 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+|+|+|+.||||||||+.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 358999999999999999954
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.42 E-value=0.003 Score=54.78 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=22.7
Q ss_pred eecceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 95 KKGFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 95 L~~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.+=.+.|+|+|.+|||||||++.|.+.
T Consensus 11 ~~~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 11 FNHQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred hCCCeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3444567899999999999999999553
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.42 E-value=0.0038 Score=56.21 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHH
Q psy91 99 DFTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L 119 (541)
++.|||+|+.||||||+.+.|
T Consensus 2 ~~iIgITG~igSGKStv~~~l 22 (205)
T d1jjva_ 2 TYIVGLTGGIGSGKTTIANLF 22 (205)
T ss_dssp CEEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 456699999999999999998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0037 Score=53.91 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|||||||++.+.+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5679999999999999999954
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.41 E-value=0.004 Score=53.97 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+++|++|||||||++.+..
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHc
Confidence 4569999999999999999843
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.40 E-value=0.0029 Score=55.93 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||+||||||+.+.|+
T Consensus 6 I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIK 24 (189)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999993
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.38 E-value=0.0012 Score=61.09 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCC---CCCCCCCeeEeeccc-hhhhhhhhhcccee
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK---GSIPYSDIGFATLPE-QVHRKSVKKGFDFT 264 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~---~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~ 264 (541)
+.++|.+|+||||+++.++|+.++..+.+...+.. ....++.|||++|.. +++..+|.+++.|.
T Consensus 27 ~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~ 94 (240)
T d2onka1 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhh
Confidence 44689999999999999999999876655322211 122346799999987 66778999998774
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.37 E-value=0.0029 Score=63.28 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.8
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
+..+.|||+|.+|+|||||+|.|.|..
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345778999999999999999997643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0022 Score=56.51 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|.|+|++||||||+-+.|+
T Consensus 21 vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 21 TVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp EEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999993
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0046 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|+|||||++.+..
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5679999999999999998854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.30 E-value=0.0033 Score=55.74 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||+||||||+.+.|+.
T Consensus 9 I~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999943
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.26 E-value=0.0045 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|||||||++.|.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999954
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.25 E-value=0.0045 Score=54.73 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy91 101 TLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L 119 (541)
.|||.|++||||||+.+.|
T Consensus 5 IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3499999999999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0049 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|+||||||+.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4579999999999999999843
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.01 Score=51.39 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=20.2
Q ss_pred eEeccCCcchhHHHHhhhcccc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+.++|.+|+|||||+|+|++..
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.24 E-value=0.0041 Score=56.22 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy91 101 TLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L 119 (541)
.|||.||+||||||+-+.|
T Consensus 5 ~IaIdGp~GsGKgT~ak~L 23 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKII 23 (223)
T ss_dssp EEEEECSSCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3588999999999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.004 Score=55.29 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||+||||||+.+.|+.
T Consensus 11 I~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999944
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.0039 Score=53.85 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+-+.|+
T Consensus 4 IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999994
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0053 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|+|||||++.+..
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5679999999999999999943
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.19 E-value=0.0041 Score=54.03 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|.|+|++||||||+-+.|+
T Consensus 5 Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999994
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.13 E-value=0.0041 Score=55.13 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
-|+|-|+.|||||||++.|..
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999999954
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0054 Score=54.19 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||+||||||..+.|+.
T Consensus 4 I~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999943
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.006 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.786 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|||||||++.+.+
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5679999999999999999843
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0048 Score=59.86 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~ 120 (541)
.+.|||+||.|||||||++.|.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~ 75 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFG 75 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHH
Confidence 5667999999999999999993
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0062 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~ 120 (541)
+|.|+|+|.+|||||||++.+.
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEECCCCcCHHHHHHHHH
Confidence 4567999999999999999884
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.0045 Score=53.98 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||+||||||+.+.|+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999943
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0064 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.+...
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECCCCcCHHHHHHHHhcC
Confidence 55699999999999999999543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.0054 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..|.|+||.||||||+.+.|+.
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999943
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0066 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=20.8
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHh
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~ 120 (541)
+..|.|+|+|+.|+|||||++.+.
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEEECCCCcCHHHHHHHHH
Confidence 456678999999999999999883
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0067 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|+|||||++.+..
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4569999999999999999954
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.99 E-value=0.0073 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.7
Q ss_pred eeeEeccCCcchhHHHHhhhccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~ 285 (541)
+|+.++|..++|||||+|.|...
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEEeCCCCcHHHHHHHHHHh
Confidence 47999999999999999999754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.006 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+++|.+|||||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 458999999999999999843
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0051 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.729 Sum_probs=20.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|-+.|+++|++|+|||||++.+..
T Consensus 2 ~~~Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 2 VQFKLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEEEEECTTSSHHHHHHTTC-
T ss_pred eeEEEEEECCCCcCHHHHHHHHHh
Confidence 456679999999999999998844
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0063 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|||||||++.+..
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4679999999999999998844
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.93 E-value=0.011 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.4
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGD 290 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~ 290 (541)
.|.|+|+.++|||||||.|.+.++++.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~lP~ 54 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFLPR 54 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCCcCCC
Confidence 478999999999999999998886543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.91 E-value=0.0068 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.768 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+++|.+|||||||++.+..
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 4569999999999999999844
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.007 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.686 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|||||||++.+..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhc
Confidence 4568999999999999999843
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0072 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|.+|+|||||++.+.+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~ 23 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGG 23 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhC
Confidence 3568999999999999999954
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0077 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|+|||||++.+..
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3468999999999999999943
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.0073 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+++|.+|||||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999999943
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=94.80 E-value=0.0018 Score=60.04 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCC---------CCCCCCCeeEeeccc-hhhhhhhhhccceeeEeccC
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK---------GSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGE 270 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~---------~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~ 270 (541)
+.++|.+|+||||+++.++|+.++..+.+...+.. ....++.|||++|.. ++...++.+++.|.+.+.|.
T Consensus 32 ~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~ 111 (240)
T d1g2912 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV 111 (240)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCC
Confidence 55789999999999999999999877766332211 022356899999988 77788999999887666554
Q ss_pred Cc
Q psy91 271 SG 272 (541)
Q Consensus 271 sg 272 (541)
+.
T Consensus 112 ~~ 113 (240)
T d1g2912 112 PR 113 (240)
T ss_dssp CH
T ss_pred CH
Confidence 43
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.79 E-value=0.0058 Score=53.21 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=16.6
Q ss_pred EEEcCCCCCHHHHHHHHh
Q psy91 103 MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~ 120 (541)
.|.|++||||||+.+.|+
T Consensus 5 vi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 5 IVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEECTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 678999999999999994
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.0078 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|.+|+|||||++.+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5679999999999999999843
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0067 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.773 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|.+|||||||++.+..
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcCHHHHHHHHHh
Confidence 3468999999999999999943
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.77 E-value=0.01 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHHh
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L~ 120 (541)
.|++--+.+ +|.|+||+|||||.-.|.
T Consensus 4 ~lH~~~v~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEETTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 455555555 899999999999987764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.77 E-value=0.0023 Score=58.93 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=54.3
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC---------CCCCCCeeEeeccc-hhhhhhhhhccceeeEeccC
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG---------SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGE 270 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~---------~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~ 270 (541)
+.++|.+|+||||+++.++|+.++..+.+...+... ..++.+|||++|.. +++..++.+++.|.+.+.+.
T Consensus 34 ~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~ 113 (230)
T d1l2ta_ 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYR 113 (230)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCS
T ss_pred EEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhcc
Confidence 457899999999999999999998877664332211 11235699999987 78889999999887665544
Q ss_pred Ccc
Q psy91 271 SGL 273 (541)
Q Consensus 271 sg~ 273 (541)
.+.
T Consensus 114 ~~~ 116 (230)
T d1l2ta_ 114 GAM 116 (230)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.008 Score=53.27 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|+.|||||||++.+..
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhh
Confidence 5569999999999999999843
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.75 E-value=0.006 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~ 120 (541)
.+.|+++|++|||||||++.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 3467999999999999999984
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.017 Score=54.50 Aligned_cols=65 Identities=26% Similarity=0.210 Sum_probs=42.6
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
-+.|+|..++|||+|+|.|+.... ....-.+..+.|..|-.....+ .++....++++||.|+++.
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~----~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK----GFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS----CSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCG
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC----CCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccccc
Confidence 467889999999999999997542 1222223334455554332222 3455678999999999864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.71 E-value=0.0071 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=22.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.++++|.+|+|||||++.|....
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999999987554
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0084 Score=51.99 Aligned_cols=21 Identities=38% Similarity=0.887 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q psy91 100 FTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|+++|++|||||||++.+.
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999998884
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.0089 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~ 120 (541)
++.|+|+|.+|+|||||++.+.
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHH
Confidence 3456999999999999999884
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.0089 Score=51.87 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|+|||||++.+..
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 4569999999999999998843
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.0095 Score=51.49 Aligned_cols=23 Identities=43% Similarity=0.827 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
++.|+++|.+|||||||++.+..
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 56779999999999999998844
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.62 E-value=0.0079 Score=53.33 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+||.||||||+-+.|+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999954
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.008 Score=57.68 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHH
Q psy91 99 DFTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L 119 (541)
-+.|||-|+|||||||+.+.|
T Consensus 80 P~iIGIaG~sgSGKSTla~~L 100 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCCCcHHHHHH
Confidence 355699999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.62 E-value=0.0072 Score=52.82 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|.++|++||||||+.+.++
T Consensus 17 iil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 17 VVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999884
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.61 E-value=0.0071 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy91 102 LMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
|.+.||+|||||||.+.|+...
T Consensus 35 ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999996543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.0096 Score=51.81 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4569999999999999999843
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.58 E-value=0.015 Score=51.77 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=36.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+++++|.+|+|||||+|.|..... .... .. .+..+ ..+.+ .++....+.+.|+||..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~-~~~~-----~t--~~~~~--~~~~~-~~~~~~~~~~~d~~g~~ 58 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQY-RDTQ-----TS--ITDSS--AIYKV-NNNRGNSLTLIDLPGHE 58 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-CCBC-----CC--CSCEE--EEEEC-SSTTCCEEEEEECCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-Cccc-----CC--eeEEE--EEEEE-eeeeeeeeeeeeccccc
Confidence 588999999999999999987652 2111 11 11122 22222 23345678899999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.57 E-value=0.0074 Score=52.73 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||+||||||+.+.|+
T Consensus 3 I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999994
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.54 E-value=0.0074 Score=52.82 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+||.||||||+.+.|+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999943
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.0073 Score=52.67 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||.||||||..+.|+.
T Consensus 3 I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999943
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.51 E-value=0.0076 Score=53.55 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+++|.+|||||||.+.|+
T Consensus 5 i~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999999994
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.50 E-value=0.027 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=21.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+.++++|.+|+|||||+|.+....
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998765
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0021 Score=59.56 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC--------CCCCCCeeEeeccc-hhhhhhhhhccceeeEeccCC
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG--------SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGES 271 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~--------~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~s 271 (541)
+.++|.+|+||||+++.++|+.++..+.+...+... ...++.|||++|.. ++...++.+++.|.+.+.|.+
T Consensus 34 ~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~ 113 (240)
T d3dhwc1 34 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP 113 (240)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCC
Confidence 456899999999999999999998777664333211 01124699999987 778889999998877665544
Q ss_pred c
Q psy91 272 G 272 (541)
Q Consensus 272 g 272 (541)
.
T Consensus 114 ~ 114 (240)
T d3dhwc1 114 K 114 (240)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.50 E-value=0.029 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred eeeEeccCCcchhHHHHhhhcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~ 284 (541)
.|+.++|..+.|||||+|.|..
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g 27 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTG 27 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEEeccCCcHHHHHHHHHh
Confidence 4889999999999999999964
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.47 E-value=0.0088 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999954
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.011 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|+|||||++.+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3569999999999999999854
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.011 Score=51.08 Aligned_cols=21 Identities=38% Similarity=0.857 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q psy91 100 FTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|+++|..|+|||||++.+.
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHH
Confidence 567999999999999999984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.38 E-value=0.0097 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~ 120 (541)
++.|+|.||.|||||||+..|.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~ 72 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALG 72 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHH
Confidence 4667999999999999999993
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.011 Score=51.00 Aligned_cols=22 Identities=45% Similarity=0.783 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~ 120 (541)
.+.|+++|.+|+|||||++.+.
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHH
Confidence 4567999999999999999994
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=94.36 E-value=0.001 Score=61.24 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=50.1
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC---CCCCCCeeEeeccc-hhhhhhhhhccceeeE
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG---SIPYSDIGFATLPE-QVHRKSVKKGFDFTLM 266 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~---~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lm 266 (541)
+.++|.+|+||||+++.++|+.++..+.+...+... ...++.|||++|.. ++...+|.+++.|.+.
T Consensus 29 ~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~ 98 (229)
T d3d31a2 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (229)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHh
Confidence 457899999999999999999998777654322211 12245799999988 7778899999877543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.35 E-value=0.011 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.++++|.+|+|||||+|.|....
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999997654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.33 E-value=0.009 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+||.||||||+.+.|+.
T Consensus 5 riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999953
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.012 Score=50.77 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|+|||||++.+..
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4458999999999999999954
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.012 Score=52.83 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q psy91 100 FTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L 119 (541)
+.|||+|..||||||..++|
T Consensus 4 ~iIgitG~igSGKStv~~~l 23 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAF 23 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHH
Confidence 34599999999999999998
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.028 Score=54.55 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=38.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccC-CC------CCCCCCCCCCCcceEEeeeEEEeee--------------cCeeeeE
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLY-GD------RKVPNVNDRQGKTTTIEKKSMDIEE--------------RGVKLRL 322 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~-~~------~~~~~ls~g~~q~v~I~~~~~~i~e--------------~gv~~~L 322 (541)
|+.++|..+.|||||+++|...... .. +........+.+..+|....+.+.- ++-...+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 6889999999999999998532111 10 0111111122333344333332211 1224679
Q ss_pred EEEcCCCCCCCccc
Q psy91 323 TVVDTPGFGDSINS 336 (541)
Q Consensus 323 ~I~DePg~Gd~~~~ 336 (541)
+|+||||.-|....
T Consensus 99 nliDtPGh~dF~~e 112 (341)
T d1n0ua2 99 NLIDSPGHVDFSSE 112 (341)
T ss_dssp EEECCCCCCSSCHH
T ss_pred EEEcCCCcHHHHHH
Confidence 99999999876543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.12 E-value=0.018 Score=50.54 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=32.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|.+|+|||||++.|.... ... .|+.+....+.+ + ..++.+.|++|-
T Consensus 3 iKivllG~~~vGKTsll~r~~f~~----~~~--------pTiG~~~~~~~~--~--~~~~~~~D~~gq 54 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMRIIH----GQD--------PTKGIHEYDFEI--K--NVPFKMVDVGGQ 54 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH----SCC--------CCSSEEEEEEEE--T--TEEEEEEEECC-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC----CCC--------CeeeeEEEEEee--e--eeeeeeecccce
Confidence 578999999999999999993221 111 133333332222 1 567888899875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.015 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.|+|+|.+|+|||||++.+..
T Consensus 8 ~~~Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 8 LMLKCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhh
Confidence 345679999999999999999843
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.017 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|++|+|||||++.+..
T Consensus 4 iKvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4569999999999999998843
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.05 E-value=0.011 Score=52.42 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+||+||||||+.+.|+.
T Consensus 11 I~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999944
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.015 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|.+|+|||||++.+..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4568999999999999999843
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.03 E-value=0.012 Score=56.75 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|.|.||.||||||||++|+..
T Consensus 169 ili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 169 VIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp EEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEeeccccchHHHHHHhhh
Confidence 489999999999999999553
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.02 E-value=0.0089 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=9.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|.+|||||||++.+..
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEEECCCCC-----------
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5679999999999999998843
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.02 E-value=0.025 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred eeEeccCCcchhHHHHhhhcccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.|+++|.+|+|||||+|+|....
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.01 E-value=0.014 Score=51.33 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy91 101 TLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L 119 (541)
.|.|+|.+|||||||++.+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.01 E-value=0.017 Score=49.59 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=23.2
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccc
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+-.|.++++|.+|+|||||+|+|....
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 335789999999999999999997654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.016 Score=50.05 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
-+.|+++|.+|+|||||++.+.+
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCcCHHHHHHHHHh
Confidence 35679999999999999999854
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.95 E-value=0.012 Score=53.57 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|.||+|+|||||.++|+.
T Consensus 48 lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 48999999999999999943
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.016 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|.+|+|||||++.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 458999999999999999843
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=93.89 E-value=0.0086 Score=55.43 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=49.4
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCC-----CCCCCCCCeeEeeccchhhhhhhhhccce
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNE-----KGSIPYSDIGFATLPEQVHRKSVKKGFDF 263 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~-----~~~~~~~~vG~~~~~~q~~~~~vk~g~~f 263 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+. .....++.|||++|.+.+...++++++.+
T Consensus 31 vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~ 98 (242)
T d1mv5a_ 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY 98 (242)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheec
Confidence 4568999999999999999999988776643221 12345678999999997777799998765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.83 E-value=0.017 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+++|.+|+|||||++.+..
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHh
Confidence 34568999999999999998843
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.018 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+++|.+|+|||||++.+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5569999999999999998844
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.013 Score=53.90 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|.||+|+||||+.++|+.
T Consensus 55 lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999954
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.78 E-value=0.021 Score=49.99 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=20.6
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHHh
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L~ 120 (541)
.+++-.+.+ .|.||||+|||||.-.|.
T Consensus 5 ~~H~~~v~~~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEVFGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 345545555 899999999999987774
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.013 Score=52.40 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|+|.||+||||||+-+.|
T Consensus 6 I~I~GppGSGKgT~ak~L 23 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAM 23 (225)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 489999999999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.75 E-value=0.017 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|.+|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 458999999999999999843
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.72 E-value=0.017 Score=52.01 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q psy91 100 FTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|-|.|.||||||||-+.|.
T Consensus 25 ~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 25 LTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 345999999999999999993
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.014 Score=52.92 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|.||+|+|||||.++|+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 47999999999999999954
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.37 E-value=0.016 Score=52.70 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||+|+|||||.++|+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999943
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.35 E-value=0.02 Score=51.79 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q psy91 100 FTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L 119 (541)
+.|.|+|.+|||||||++-+
T Consensus 7 ~KilllG~~~vGKTsll~~~ 26 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999988
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.35 E-value=0.027 Score=48.88 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHHh
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L~ 120 (541)
.|++.-+.+ .|.|+||+|||||.-.|.
T Consensus 5 ~~H~~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 455555555 899999999999886663
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.023 Score=53.73 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q psy91 100 FTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L 119 (541)
+-|||-|+.|||||||.+.|
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHH
Confidence 45699999999999999887
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=93.16 E-value=0.0094 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred ceeeEeccCCcchhHHHHhhhc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~ 283 (541)
.+++.++|.-+.|||||++.|.
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999999999985
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.11 E-value=0.018 Score=52.94 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
++|.||+|+|||||++.++
T Consensus 32 i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 4899999999999999874
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.07 E-value=0.01 Score=56.26 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=14.2
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|||.|+|||||||+.+.|
T Consensus 7 IgIaG~SGSGKTTva~~l 24 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHTF 24 (288)
T ss_dssp EEEESCC---CCTHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 599999999999999998
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.021 Score=52.38 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=16.6
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.|||.|||||+||.+
T Consensus 45 iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 45 IITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEeccCchhhHHHHHHH
Confidence 89999999999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.70 E-value=0.021 Score=51.44 Aligned_cols=18 Identities=44% Similarity=0.829 Sum_probs=15.6
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|+++||+||||||.+==|
T Consensus 9 i~lvGptGvGKTTTiaKL 26 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKL 26 (207)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 489999999999987666
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.016 Score=52.67 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|-|+-||||||+++.|...
T Consensus 5 I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 389999999999999999543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.68 E-value=0.025 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+.|||||...||||||+++|.+
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHC
Confidence 45689999999999999999964
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.64 E-value=0.021 Score=51.54 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=16.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+++||+|+||||.+==|+
T Consensus 14 i~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999876663
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.59 E-value=0.025 Score=51.47 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||+|+|||||.++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999943
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.025 Score=50.97 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.+.||+|+||||+.++|+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHH
Confidence 4799999999999999994
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.49 E-value=0.043 Score=49.48 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=35.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++++|.+|+|||||++.|...... .|+.+....+.+ + +.++.+.|+.|-.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~-------------pTiG~~~~~~~~--~--~~~~~~~D~~Gq~ 58 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV-------------LTSGIFETKFQV--D--KVNFHMFDVGGQR 58 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC-------------CCCSCEEEEEEE--T--TEEEEEEECCCST
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC-------------CCCCeEEEEEEE--C--cEEEEEEecCccc
Confidence 467999999999999999999765421 123333333222 2 4678899988754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.45 E-value=0.054 Score=46.90 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=33.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+.++++|..|+|||||++.|.... ++. ..+....+. +-..++.|.|+.|-.
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~-~~t-------------~~~~~~~~~----~~~~~~~i~D~~Gq~ 53 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIH-EAG-------------TGIVETHFT----FKDLHFKMFDVGGQR 53 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-SCC-------------CSEEEEEEE----ETTEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CCC-------------ccEEEEEEE----eeeeeeeeecccccc
Confidence 578999999999999999986443 111 111111111 225788999998864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.45 E-value=0.05 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
..+.++|.+|+|||||+|.|....
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.43 E-value=0.035 Score=48.38 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q psy91 100 FTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L 119 (541)
+.|.|+|.+|+||||||+.+
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~ 22 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQM 22 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45589999999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.024 Score=51.12 Aligned_cols=19 Identities=37% Similarity=0.744 Sum_probs=16.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+++||+|+||||.+-=|+
T Consensus 12 i~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999886663
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.41 E-value=0.027 Score=51.25 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=16.6
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.|||.+||||+||.+
T Consensus 39 iiTGpN~~GKSt~lk~i 55 (224)
T d1ewqa2 39 LITGPNMAGKSTFLRQT 55 (224)
T ss_dssp EEESCSSSSHHHHHHHH
T ss_pred EEECCCccccchhhhhh
Confidence 89999999999999998
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.26 E-value=0.021 Score=51.57 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=12.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+++||+|+||||.+==|+
T Consensus 15 i~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEECSCCC----HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999876663
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.26 E-value=0.029 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|.||+|+||||+++.|+.
T Consensus 45 ~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999943
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.09 E-value=0.056 Score=46.98 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=35.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.|+++|.+|+|||||++.|..... . .. .|+.+....+. .-...+.+.|+.|.-
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~--~~--------pTiG~~~~~~~----~~~~~~~~~d~~g~~ 56 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG-S--GV--------PTTGIIEYPFD----LQSVIFRMVDVGGQR 56 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS-S--CC--------CCCSCEEEEEE----CSSCEEEEEECCCST
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC-C--CC--------ceeeEEEEEEe----ccceeeeeccccccc
Confidence 36899999999999999999865542 1 11 23333322222 125778889998753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.07 E-value=0.031 Score=53.40 Aligned_cols=20 Identities=25% Similarity=0.669 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.++||+|||||.|.++|+.
T Consensus 52 iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 47899999999999999944
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.96 E-value=0.033 Score=51.40 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|.+.||+|||||+|.++|+.
T Consensus 42 ~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 468999999999999999953
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.90 E-value=0.034 Score=50.48 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|||+|..+||||||+++|++
T Consensus 8 IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHh
Confidence 69999999999999999954
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.86 E-value=0.048 Score=47.27 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy91 101 TLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L 119 (541)
.|+|+|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsl~~r~ 22 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQM 22 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4589999999999999998
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.035 Score=51.57 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.+.||+|||||+|.++|+
T Consensus 48 iLL~GppGtGKT~la~~iA 66 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIA 66 (256)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEeeCCCCCCccHHHHHHH
Confidence 3789999999999999994
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.76 E-value=0.032 Score=51.42 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|.||.|+||||+++.++
T Consensus 49 l~l~GppGtGKT~l~~~l~ 67 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTV 67 (287)
T ss_dssp EECTTCCSSSHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHH
Confidence 4677999999999999994
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.75 E-value=0.033 Score=50.15 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||.|+|||||.++|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHH
Confidence 47999999999999999953
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.71 E-value=0.037 Score=51.09 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||+|||||+|.++|+.
T Consensus 45 iLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHH
Confidence 48999999999999999954
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.71 E-value=0.04 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|||+|...||||||+|+|.+.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4699999999999999999653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.0074 Score=55.87 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=48.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC-----CCCCCCeeEeeccchhhhhhhhhccce
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG-----SIPYSDIGFATLPEQVHRKSVKKGFDF 263 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~-----~~~~~~vG~~~~~~q~~~~~vk~g~~f 263 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+... ...++.|||++|.+++...|+.+|+.|
T Consensus 32 vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~ 99 (241)
T d2pmka1 32 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL 99 (241)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccc
Confidence 457899999999999999999998777654322211 223567999999998888899998865
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.63 E-value=0.033 Score=50.02 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+++||+|+||||.+--|+
T Consensus 13 i~lvGp~GvGKTTTiaKLA 31 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLA 31 (207)
T ss_dssp EEEECCTTTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999887673
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=91.56 E-value=0.032 Score=47.23 Aligned_cols=20 Identities=40% Similarity=0.508 Sum_probs=18.0
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
+.++|.+|+|||||++.|..
T Consensus 5 i~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999964
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.53 E-value=0.04 Score=48.71 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|-|+-||||||+++.|.
T Consensus 3 I~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999993
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.028 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCC
Q psy91 103 MVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~ 123 (541)
+|+||-++|||||||.|++..
T Consensus 36 si~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 36 AIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEBTTSSHHHHHHHHTTCS
T ss_pred EEECCCCCCHHHHHHHHcCCC
Confidence 999999999999999997643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.50 E-value=0.057 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|||+|.-++|||||++.|++
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g 27 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTG 27 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEeccCCcHHHHHHHHHh
Confidence 469999999999999999965
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.34 E-value=0.047 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=21.0
Q ss_pred eecceEEEEEEcCCCCCHHHHHHHHh
Q psy91 95 KKGFDFTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 95 L~~isl~iaIiGpSGsGKSTLL~~L~ 120 (541)
+..-++-|.|.||.||||||+|.+++
T Consensus 154 ~~~~~GliLvtGpTGSGKSTTl~~~l 179 (401)
T d1p9ra_ 154 IKRPHGIILVTGPTGSGKSTTLYAGL 179 (401)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred HhhhhceEEEEcCCCCCccHHHHHHh
Confidence 33345666999999999999999993
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.31 E-value=0.053 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.8
Q ss_pred eeEeccCCcchhHHHHhhhcccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.++|.+++|||||+|.|-+..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 36789999999999999997654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.17 E-value=0.051 Score=50.93 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
++.|||||-..+|||||+++|..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHC
Confidence 45679999999999999999954
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=0.038 Score=50.34 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|.||+|+||||+.++++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999943
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=91.00 E-value=0.0097 Score=55.51 Aligned_cols=63 Identities=22% Similarity=0.169 Sum_probs=49.2
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC-----CCCCCCeeEeeccchhhhhhhhhccce
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG-----SIPYSDIGFATLPEQVHRKSVKKGFDF 263 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~-----~~~~~~vG~~~~~~q~~~~~vk~g~~f 263 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+.+. ...++.|||++|.+.+...|+++|+.|
T Consensus 47 vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~ 114 (255)
T d2hyda1 47 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 114 (255)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGG
T ss_pred EEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhc
Confidence 457899999999999999999998776654322211 234578999999998888899998865
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.96 E-value=0.048 Score=50.51 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||+|||||+|.++++.
T Consensus 41 iLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHH
Confidence 47999999999999999944
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.0085 Score=55.78 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=48.6
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC-----CCCCCCeeEeeccchhhhhhhhhccce
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG-----SIPYSDIGFATLPEQVHRKSVKKGFDF 263 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~-----~~~~~~vG~~~~~~q~~~~~vk~g~~f 263 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+... ...++.|||++|.+++...++++++.|
T Consensus 43 vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 110 (251)
T d1jj7a_ 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAY 110 (251)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhh
Confidence 457899999999999999999998777654322211 223467999999998878899888765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.73 E-value=0.051 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.|+++|.-.||||||||+|+|.+
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 45999999999999999998754
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.71 E-value=0.034 Score=50.42 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=19.6
Q ss_pred ceeeEeccCCcchhHHHHhhhc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~ 283 (541)
.+|+.++|.-+.|||||+..|.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHH
Confidence 3589999999999999999885
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.70 E-value=0.055 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.|+++|.-+||||||||+|+|.+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 46999999999999999998754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=90.63 E-value=0.048 Score=46.68 Aligned_cols=21 Identities=38% Similarity=0.789 Sum_probs=18.7
Q ss_pred eeEeccCCcchhHHHHhhhcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~ 284 (541)
.+.++|++|+|||||++.+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHh
Confidence 578999999999999999854
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.37 E-value=0.076 Score=47.32 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|||+|..+||||||++.|+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 46999999999999999994
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.062 Score=46.88 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=15.9
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.||+|||||||+--+
T Consensus 27 ~i~G~~GsGKT~l~l~l 43 (242)
T d1n0wa_ 27 EMFGEFRTGKTQICHTL 43 (242)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 79999999999998877
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.29 E-value=0.072 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.4
Q ss_pred ceeeEeccCCcchhHHHHhhhc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~ 283 (541)
..|+.++|.-+.||||++..|.
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHH
T ss_pred ceEEEEEeeCCCCHHHHHHHHH
Confidence 4588899999999999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.99 E-value=0.21 Score=44.04 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.7
Q ss_pred eeeEeccCCcchhHHHHhhhcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~ 284 (541)
+|+.++|.-..|||||++.|..
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHS
T ss_pred eEEEEEEccCCcHHHHHHHHHh
Confidence 5889999999999999999964
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.95 E-value=0.06 Score=50.09 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|.||+|+|||+|.++|+.
T Consensus 44 iLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcchhHHHHHHH
Confidence 57999999999999999944
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.069 Score=47.43 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|-|+-||||||+++.|.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3788999999999999993
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.074 Score=47.56 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=16.4
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|+|-|+-||||||+.+.|
T Consensus 6 I~ieG~dGsGKsT~~~~L 23 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKL 23 (209)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478899999999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.48 E-value=0.07 Score=47.90 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|.||+|||||-|+.+++
T Consensus 39 l~l~G~~G~GKTHLl~A~~ 57 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAG 57 (213)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4799999999999999993
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=89.36 E-value=0.018 Score=53.73 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=45.8
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC------------------CCCCCCeeEeeccc-hhhhhhhhhcc
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG------------------SIPYSDIGFATLPE-QVHRKSVKKGF 261 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~------------------~~~~~~vG~~~~~~-q~~~~~vk~g~ 261 (541)
+.++|.+|+||||+++.+.|+.++..+.+...+... ...+..|||++|.. ++...++.+++
T Consensus 31 ~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env 110 (258)
T d1b0ua_ 31 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV 110 (258)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhh
Confidence 557899999999999999999997766553322111 01235699999987 66777888876
Q ss_pred ce
Q psy91 262 DF 263 (541)
Q Consensus 262 ~f 263 (541)
.+
T Consensus 111 ~~ 112 (258)
T d1b0ua_ 111 ME 112 (258)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.20 E-value=0.075 Score=45.22 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.0
Q ss_pred eeEeccCCcchhHHHHhhhcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~ 284 (541)
+|.+.|.+|+||||+++.|..
T Consensus 9 ~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999864
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.19 E-value=0.022 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred ceeeEeccCCcchhHHHHhhhc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~ 283 (541)
.+|+.++|..+.||||++..|.
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHH
T ss_pred ccEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999985
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.051 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLY 125 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~ 125 (541)
+.|+||+|+|||++...|+.+...
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~~ 69 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHHh
Confidence 489999999999999999654433
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.07 E-value=0.095 Score=49.02 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|||+|..|||||||...|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHH
Confidence 599999999999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.77 E-value=0.098 Score=52.42 Aligned_cols=20 Identities=25% Similarity=0.669 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.++||+|||||-|.+.|+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999954
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=88.68 E-value=0.035 Score=51.01 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=48.0
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC----CCCCCCeeEeeccc-hhhhhhhhhccceee
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG----SIPYSDIGFATLPE-QVHRKSVKKGFDFTL 265 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~----~~~~~~vG~~~~~~-q~~~~~vk~g~~f~l 265 (541)
+.++|.+|+||||+.+.+.|+.++..+.+...+... ...+..+||++|.. .+...++.+++.|..
T Consensus 31 ~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~ 100 (238)
T d1vpla_ 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA 100 (238)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHH
Confidence 457899999999999999999998877664333221 12346799999887 556678888776643
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.57 E-value=0.038 Score=51.30 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=48.6
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC------CCCCCCeeEeeccc-hhhhhhhhhccceeeEe
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG------SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMV 267 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~------~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv 267 (541)
+.++|.+|+||||+.+.+.|+.++..+.+...+... ......||+.+|.. .+...++.+++.+..+.
T Consensus 33 ~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~ 106 (254)
T d1g6ha_ 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 106 (254)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred EEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhh
Confidence 456899999999999999999998877664433221 11223589999887 66778999988664333
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.52 E-value=0.13 Score=45.49 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|||+|.-.+|||||++.|++
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEEEccCCcHHHHHHHHHh
Confidence 569999999999999999965
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.45 E-value=0.094 Score=48.81 Aligned_cols=18 Identities=44% Similarity=0.791 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|||+|..|||||||+..|
T Consensus 5 v~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHH
Confidence 489999999999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.097 Score=46.86 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|-|+-||||||+.+.|.
T Consensus 6 I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 3789999999999999994
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.30 E-value=0.062 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLSDL 124 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~~~ 124 (541)
.+.||||+|+|||+++..|+....
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 347999999999999999955433
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=87.55 E-value=0.1 Score=43.15 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=17.5
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
|+++|.+|+||||+++.|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=0.11 Score=51.23 Aligned_cols=18 Identities=50% Similarity=0.809 Sum_probs=16.3
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
++|+|++|||||++++.|
T Consensus 53 ~~I~G~tGsGKT~~l~~l 70 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLREL 70 (433)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHH
Confidence 489999999999999766
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.21 E-value=0.11 Score=46.87 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.5
Q ss_pred EEEcCCCCCHHHHHHHHhcC
Q psy91 103 MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~ 122 (541)
.|.|.=||||||||+-|+..
T Consensus 7 iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 7 LLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEESSSSSCHHHHHHHHHS
T ss_pred EEeeCCCCCHHHHHHHHHhc
Confidence 68999999999999998543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.04 E-value=0.14 Score=46.27 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|||.|+-||||||..+.|.
T Consensus 4 IgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4999999999999999993
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.73 E-value=0.14 Score=46.11 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHHh
Q psy91 103 MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~ 120 (541)
+|=|+-||||||+++.|.
T Consensus 6 viEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 6 SIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 788999999999999994
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.58 E-value=0.13 Score=45.89 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=15.8
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.||+|||||||.--+
T Consensus 38 li~G~pGsGKT~l~lq~ 54 (251)
T d1szpa2 38 ELFGEFRTGKSQLCHTL 54 (251)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 79999999999998777
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.55 E-value=0.14 Score=48.65 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.++||+|+|||.|.+.|+
T Consensus 55 ~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCcchhHHHHHHHH
Confidence 4899999999999999994
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.52 E-value=0.13 Score=43.66 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.3
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
+.|+|.+|+|||||++.|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999998853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.45 E-value=0.08 Score=49.72 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=45.8
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhcccee
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFT 264 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~ 264 (541)
+.++|.+|+||||+++.+.|+..+..+.+.. .+.++|++|...+...++++++.|.
T Consensus 65 vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~--------~g~i~~v~Q~~~l~~~tv~eni~~~ 120 (281)
T d1r0wa_ 65 LAITGSTGSGKTSLLMLILGELEASEGIIKH--------SGRVSFCSQFSWIMPGTIKENIIFG 120 (281)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCSEEEEEC--------CSCEEEECSSCCCCSEEHHHHHTTT
T ss_pred EEEECCCCChHHHHHHHHhCCCcCCCcEEEE--------CCEEEEEeccccccCceeecccccc
Confidence 4578999999999999999999987776542 3469999998877777888887653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.24 E-value=0.057 Score=48.07 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=42.5
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchh-hhhhhhhcc
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQV-HRKSVKKGF 261 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~-~~~~vk~g~ 261 (541)
+.++|.+|+||||+.+.++|+.++..+.+...+.+....+..++|.++...+ ...++++.+
T Consensus 30 ~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l 91 (200)
T d1sgwa_ 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYL 91 (200)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHH
T ss_pred EEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHH
Confidence 4568999999999999999999988887754443333445678888776532 333444433
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=85.77 E-value=0.15 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.5
Q ss_pred ccceeeEeccCCcchhHHHHhhhcc
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~ 284 (541)
|-.+.|.+.|.+|+|||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.70 E-value=0.22 Score=46.13 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
-.+.|+|+|-..+|||||+|.|.+..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEEecCccchhhhhhhhhccc
Confidence 44667999999999999999997654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.65 E-value=0.14 Score=46.04 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=16.2
Q ss_pred EE-EEEcCCCCCHHHHHHHH
Q psy91 101 TL-MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~i-aIiGpSGsGKSTLL~~L 119 (541)
++ .|.||+|||||||.--+
T Consensus 37 ~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 44 89999999999997655
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=85.47 E-value=0.035 Score=51.50 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC-----CCCCCCeeEeeccchhhhhhhhhccc
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG-----SIPYSDIGFATLPEQVHRKSVKKGFD 262 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~-----~~~~~~vG~~~~~~q~~~~~vk~g~~ 262 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+... ...+..|||++|...+...++.+++.
T Consensus 44 iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~ 110 (253)
T d3b60a1 44 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 110 (253)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhh
Confidence 457899999999999999999998777654322211 22345799999998777767766553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=85.22 E-value=0.15 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.0
Q ss_pred eeEeccCCcchhHHHHhhhccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~ 285 (541)
|++|+|..|+|||||+|.|...
T Consensus 168 nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEeeccccchHHHHHHhhh
Confidence 6899999999999999999853
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=84.94 E-value=0.17 Score=42.31 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.6
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
+++.|.+|+||||+.+.|-.
T Consensus 5 I~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999998853
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=84.48 E-value=0.11 Score=49.05 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=19.7
Q ss_pred cceeecceEEEEEEcCCCCCHHHHH
Q psy91 92 KSVKKGFDFTLMVVGESGLGKSTLV 116 (541)
Q Consensus 92 ~~iL~~isl~iaIiGpSGsGKSTLL 116 (541)
+.|+......+.|.|+.||||||.|
T Consensus 17 ~~~v~~~~g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTTEGPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCCSSCEEEEECTTSCHHHHH
T ss_pred HHHHhCCCCCEEEEecCCccHHHHH
Confidence 4466666666789999999999765
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.37 E-value=3.4 Score=32.89 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=60.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhh
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRA 342 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~ 342 (541)
|++.+-|.+|+||||+.+.|-.+-+. .+| .+.+++- | || |..
T Consensus 7 f~i~~tg~~~~gk~~ia~al~~~l~q-------~~G--~R~vtll------------------~----~~--ni~----- 48 (122)
T d1g8fa3 7 FSIVLGNSLTVSREQLSIALLSTFLQ-------FGG--GRYYKIF------------------E----HN--NKT----- 48 (122)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT-------SCS--CCCEEEC------------------C----CT--TCH-----
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH-------hcC--CcceEEe------------------c----CC--CHH-----
Confidence 57899999999999999998644210 011 1223221 1 22 111
Q ss_pred hhhhhhhhhhhhhhhhcccCcceee-ccccchhhhhcccceeEEEcCCCCCC------CCCcHHHHHHHHHHHHHH
Q psy91 343 CCSYIDDQFRQYFNDENRQGKTTTI-EKKSMDIEERGVKLRLTVVDTPGFGD------SINSEESWRACCSYIDDQ 411 (541)
Q Consensus 343 i~~yI~~~~~~~l~~e~~~~rt~~i-~~~~~di~~~~l~~rvnvIpvi~k~D------~lt~~e~~~~i~~~i~~~ 411 (541)
++--...|..+.+--+++ ...+++..+.+-...++.+..+.-+| ..+.++|.+.|+.++.++
T Consensus 49 -------ri~fva~e~~k~G~~~iv~~~~p~e~~~~~d~~g~y~~~~~~npDLvIdT~~~sVee~V~qII~yLee~ 117 (122)
T d1g8fa3 49 -------ELLSLIQDFIGSGSGLIIPDQWEDDKDSVVGKQNVYLLDTSSSADIQLESADEPISHIVQKVVLFLEDN 117 (122)
T ss_dssp -------HHHTTHHHHHHTTCEEEESSCCCGGGGGGSCCTTEEEEESSTTCSEECSSTTCCHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHhcCCEEEEecCCcHHHHHhcCCCCeEEecCCCCCCeEEECCCCCHHHHHHHHHHHHHHC
Confidence 111112233444544443 34456666666667788887666554 456777888888888764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.31 E-value=0.31 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|||+|--++|||||++.|+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~ 24 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAIT 24 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 46999999999999999994
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.29 E-value=0.13 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCC
Q psy91 103 MVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~ 123 (541)
.||||+|+|||+++.-|+.+.
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred eEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999885543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.04 E-value=0.19 Score=42.34 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.3
Q ss_pred eeEeccCCcchhHHHHhhhcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~ 284 (541)
++.+.|++|+||||++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 477899999999999998863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=83.97 E-value=0.2 Score=41.99 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.4
Q ss_pred eeEeccCCcchhHHHHhhhcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~ 284 (541)
+|.+.|.+|+||||+.+.|..
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999998853
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=83.93 E-value=0.1 Score=47.79 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC------CCCCCCeeEeeccc-hhhhhhhhhccc
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG------SIPYSDIGFATLPE-QVHRKSVKKGFD 262 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~------~~~~~~vG~~~~~~-q~~~~~vk~g~~ 262 (541)
+.++|.+|+||||+.+.+.|+.++..+.+...+... ...+..++|.+|.. .+...++.+++.
T Consensus 35 ~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~ 103 (240)
T d1ji0a_ 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM 103 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHH
Confidence 456899999999999999999998877664333221 11233577887766 455667777653
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.85 E-value=0.2 Score=43.00 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=18.3
Q ss_pred eeEeccCCcchhHHHHhhhcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~ 284 (541)
=++++|.+|+|||||.+.|+.
T Consensus 16 liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.75 E-value=0.14 Score=48.79 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.+.|+||.|+|||||++.|.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 35799999999999999993
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.72 E-value=0.24 Score=44.73 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|.||+|+||||+.++++
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 3688999999999999883
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.68 E-value=0.39 Score=44.95 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.+-++|-+++|||||+|.|-.+.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3568889999999999999998764
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=83.51 E-value=0.26 Score=45.81 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+.+-++|-+++|||||+|.|-...
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 567889999999999999998665
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.51 E-value=0.27 Score=46.95 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|=|+-||||||+++.|..
T Consensus 7 I~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC
T ss_pred EEEECCcCCCHHHHHHHHHH
Confidence 58899999999999999954
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=83.51 E-value=0.19 Score=45.53 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=18.1
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
+.++|++|+|||||++.+.+
T Consensus 28 ~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 28 LHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EECBCCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999876
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=83.22 E-value=0.26 Score=44.19 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.9
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.||+|||||||+--+
T Consensus 30 li~G~pGsGKT~l~~qi 46 (242)
T d1tf7a2 30 LATGATGTGKTLLVSRF 46 (242)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 79999999999999777
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.19 E-value=0.21 Score=43.24 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=19.1
Q ss_pred eeEeccCCcchhHHHHhhhccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~ 285 (541)
+|.++|+||+||+|+++.|...
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.69 E-value=0.29 Score=43.29 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
+.+.||.|+||||+.+.++
T Consensus 27 lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALS 45 (207)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4789999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=0.25 Score=42.71 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.0
Q ss_pred eeEeccCCcchhHHHHhhhccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~ 285 (541)
.+.++|+||+||+|+++.|...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999998743
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=82.39 E-value=0.26 Score=41.35 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=19.4
Q ss_pred eeeEeccCCcchhHHHHhhhcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~ 284 (541)
.+|.+.|.+|+||||+.+.|..
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.23 E-value=0.39 Score=42.97 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q psy91 100 FTLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~ 120 (541)
+.|||+|--++|||||+..|+
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 356999999999999999884
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.20 E-value=0.39 Score=38.68 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q psy91 100 FTLMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L 119 (541)
|+|.+.|-||||||||-++|
T Consensus 7 f~i~~tg~~~~gk~~ia~al 26 (122)
T d1g8fa3 7 FSIVLGNSLTVSREQLSIAL 26 (122)
T ss_dssp EEEEECTTCCSCHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHH
Confidence 56689999999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=0.26 Score=40.50 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.0
Q ss_pred eeEeccCCcchhHHHHhhhcc
Q psy91 264 TLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~ 284 (541)
+|.+.|.+|+||||+.+.|-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478889999999999988753
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=81.96 E-value=0.17 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=16.8
Q ss_pred eeecceEEEEEEcCCCCCHHHHH
Q psy91 94 VKKGFDFTLMVVGESGLGKSTLV 116 (541)
Q Consensus 94 iL~~isl~iaIiGpSGsGKSTLL 116 (541)
+++..+..+.|+|+.||||||.|
T Consensus 9 av~~~~~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 9 AVEFVTGPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp HHHCCSSEEEECCCTTSCHHHHH
T ss_pred HHhCCCCCEEEEeeCCccHHHHH
Confidence 44444455689999999999754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=81.90 E-value=0.3 Score=41.00 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.2
Q ss_pred eeeEeccCCcchhHHHHhhhc
Q psy91 263 FTLMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~ 283 (541)
+.+.+.|.+|+||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468889999999999988875
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.88 E-value=0.3 Score=45.65 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|++|+|||||+..|
T Consensus 47 ~I~g~~g~GKT~l~~~i 63 (289)
T d1xpua3 47 LIVAPPKAGKTMLLQNI 63 (289)
T ss_dssp EEEECSSSSHHHHHHHH
T ss_pred eEeCCCCCCHHHHHHHH
Confidence 89999999999999888
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.67 E-value=0.32 Score=43.45 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.6
Q ss_pred EE-EEEcCCCCCHHHHHHHH
Q psy91 101 TL-MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~i-aIiGpSGsGKSTLL~~L 119 (541)
++ .|.||+|||||||.-.+
T Consensus 38 ~~~~i~G~~GsGKT~lalq~ 57 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTL 57 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 44 89999999999998777
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=81.33 E-value=0.28 Score=43.76 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=17.3
Q ss_pred eEeccCCcchhHHHHhhhc
Q psy91 265 LMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~ 283 (541)
+.|+|..|+|||||++.|.
T Consensus 3 i~v~G~~GsGKTTLl~~ll 21 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFG 21 (244)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 5789999999999999985
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.31 E-value=0.28 Score=42.02 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=19.1
Q ss_pred ceeeEeccCCcchhHHHHhhhc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~ 283 (541)
.+-|.+.|.+|+||||+.+.|.
T Consensus 22 ~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 22 RLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999985
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=81.29 E-value=0.34 Score=44.49 Aligned_cols=18 Identities=50% Similarity=0.656 Sum_probs=16.0
Q ss_pred EEEcCCCCCHHHHHHHHh
Q psy91 103 MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~ 120 (541)
.|.|++|+|||||+.-|+
T Consensus 39 vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 39 MVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 799999999999987773
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=81.29 E-value=0.32 Score=44.44 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.8
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.|++|+|||||+-.|
T Consensus 33 ~i~G~~G~GKS~l~l~l 49 (274)
T d1nlfa_ 33 ALVSPGGAGKSMLALQL 49 (274)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 69999999999999777
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.24 E-value=0.28 Score=42.62 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=17.9
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
++++|.+|+||||+.+.|..
T Consensus 5 i~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999863
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.13 E-value=0.29 Score=43.21 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=14.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
.|.|++|+|||||+--+
T Consensus 30 ~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 30 LVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 79999999999997543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.00 E-value=0.34 Score=46.91 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.++||+|||||-|.+.|+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eeeeCCCCccHHHHHHHHHh
Confidence 48999999999999999954
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.62 E-value=0.45 Score=45.44 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|=|+-||||||+++.|..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHS
T ss_pred EEEECCccCCHHHHHHHHHH
Confidence 48999999999999999944
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.55 E-value=0.36 Score=42.78 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.8
Q ss_pred EE-EEEcCCCCCHHHHHHHH
Q psy91 101 TL-MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 101 ~i-aIiGpSGsGKSTLL~~L 119 (541)
++ .|.|++|+|||||.--+
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~ 54 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQS 54 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 45 89999999999998777
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.39 E-value=0.32 Score=41.72 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=17.9
Q ss_pred eEeccCCcchhHHHHhhhccc
Q psy91 265 LMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~ 285 (541)
+.++|+||+||+|+++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 567899999999999998643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=0.31 Score=43.18 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.3
Q ss_pred eEeccCCcchhHHHHhhhccc
Q psy91 265 LMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~ 285 (541)
+.++|+||+||+|+++.|...
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.34 E-value=0.32 Score=41.06 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.1
Q ss_pred eEeccCCcchhHHHHhhhc
Q psy91 265 LMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~ 283 (541)
|.+.|.+|+||||+++.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999885
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.25 E-value=0.38 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..|+|.|..|.|||||.+.++.
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3459999999999999998843
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.02 E-value=0.38 Score=46.53 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||.|+||||+.++|+.
T Consensus 157 ~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 157 WLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999943
|