Psyllid ID: psy9208

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------

MNSTRGSKLLGWSAFTILVAAFTLLPTGQSQPSPPAVNCDYIDAEVNSYQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSVELPRT

cccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEEEEEEEEcccccccccEEEccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEccHHHHHHHHHHHHcccccEEEEEEEEEEEEccEEEEEEEEEEccccccccEEEEEEEcccccccccccccccccEEEEEEccccccccccHHHHHHHcHHHHHccEEEEEcccccccccccEEEccHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccc

ccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccEEccccEEEEEccccccEEEEEEcccccccccccEEEEccEEEEEccccccccHHHHHHccHHHHHHHcccEEEEEEEccccccccccccccEcccccccccEEEEccccHHHHHHHHHcccccEEEEEEEccccccccccccEEEEEEccccccEEEEEEcccccccccccccccccccEEEEEEEEcHHcccHHHHHHHHHHHHHccccEEEEEcccccccccEEEEcccHHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHccccEEEEccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccc

mnstrgskllgWSAFTILVAAFtllptgqsqpsppavncdyidaevnsyqPVVDRIIAAVSqgghfqahtySTLADFVdkfgprmtgsealENSIDFMVKESKDFGlevwtenvtapkwerHFEKVtlvkpwksdipvstlggsvgtpqggitaEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRsvtpyslatphtghqsydaavkpiptaciaPEYAEMLYRMYrrgdgpvvVSINIdarnvgttntrntivqirgrecpdkvvitsghldswdvgqgamddgggaFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAmesddgtftpfglslkgspEAACILNKVLRLfkpinatrlvqskypvgsdielfqeknipgvallndnaKYFWYhhtradtmsvldsDTLDLCTALWGGVAYILADLSVELPRT

mnstrgskllgWSAFTILVAAFTLLPTGQSQPSPPAVNCDYIDAEVNSYQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTenvtapkwerhfekvtlvkpwksdipvstlggsVGTPQGGITAEVAGKIVVFNQDFVSYGETVkyrskgasvasKYGAVATLIRSVTPYSLATPHTGhqsydaavkpiPTACIAPEYAEMLYRMYRRGDGPVVVSinidarnvgttntrntivqirgrecpdkVVITSGHLDSWDVGQGAMDDGGGAFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSVELPRT

********LLGWSAFTILVAAFTLLPT********AVNCDYIDAEVNSYQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSV*****

**********GWSAFTILVAAFTLLP*****************************IIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSVELP**

**STRGSKLLGWSAFTILVAAFTLLPTGQSQPSPPAVNCDYIDAEVNSYQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILADLSV*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		446	2.2.26 [Sep-21-2011]
Q6GQ29		469	Carboxypeptidase Q OS=Xen	N/A	N/A	0.901	0.857	0.452	1e-100
Q6IRK9		472	Carboxypeptidase Q OS=Rat	yes	N/A	0.899	0.849	0.421	9e-89
Q9Y646		472	Carboxypeptidase Q OS=Hom	yes	N/A	0.876	0.828	0.420	4e-86
Q5RDN7		472	Carboxypeptidase Q OS=Pon	yes	N/A	0.899	0.849	0.417	1e-85
Q17QK3		472	Carboxypeptidase Q OS=Bos	yes	N/A	0.955	0.902	0.406	2e-85
Q9WVJ3		470	Carboxypeptidase Q OS=Mus	yes	N/A	0.899	0.853	0.408	2e-85
P25152		455	Aminopeptidase YwaD OS=Ba	yes	N/A	0.643	0.630	0.247	7e-05
Q4WFX9		501	Probable leucine aminopep	yes	N/A	0.663	0.590	0.249	8e-05
C5FTZ6		495	Leucine aminopeptidase 2	N/A	N/A	0.587	0.529	0.226	0.0001
A7UI10		495	Leucine aminopeptidase 2	N/A	N/A	0.587	0.529	0.223	0.0004

>sp\|Q6GQ29\|CBPQ_XENLA Carboxypeptidase Q OS=Xenopus laevis GN=cpq PE=2 SV=1	Back alignment and function desciption

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/442 (45%), Positives = 271/442 (61%), Gaps = 40/442 (9%)

Query: 40  DYIDAEVNSYQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMV 99
           + I  E++SY+ V   II  ++  G  Q  +Y  LA FVD  G RM+GSE L+ +I +M 
Sbjct: 32  EMIKTEISSYKDVAKSIID-LAVHGKAQNRSYERLALFVDTVGNRMSGSENLKTAIAYMY 90

Query: 100 KESKDFGLE-VWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEV-- 156
           K  ++  L+ V+ E V  P WER  E   L++P K  + +  LGGS+GTP  GI+AEV  
Sbjct: 91  KSLQEDDLDRVYLEPVKVPHWERGEESAMLLEPRKKSLAILGLGGSIGTPVEGISAEVIV 150

Query: 157 --------------AGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSL 202
                          GKIVV+N+ FV+YGETV+YR  GA  A+K GAVA+LIRSVTP S+
Sbjct: 151 VSSFAELHNRSKEAKGKIVVYNEPFVNYGETVRYRGSGAVEAAKVGAVASLIRSVTPLSV 210

Query: 203 ATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNT 262
            +PHTG Q Y+  V  IPTA I  E AEML RM  RG   +V+ + + A N    ++ NT
Sbjct: 211 YSPHTGWQWYENDVPKIPTASITVEDAEMLSRMASRG-LKIVIQLKMGAVNHPDADSYNT 269

Query: 263 IVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISG-------------------I 303
           + +I G + P++VVI SGHLDSWDVGQGAMDDGGGAFIS                    +
Sbjct: 270 VAEIVGSKYPEQVVIVSGHLDSWDVGQGAMDDGGGAFISWEALSLIKDLGLRPKRTLRLV 329

Query: 304 LWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRL 363
           LWT EEQG VGA  Y + H++ + NI + MESD GTF P G+   G PEA  I+ +V++L
Sbjct: 330 LWTGEEQGGVGASQYYELHKKNISNIDLVMESDIGTFMPLGMQFTGKPEARAIMTEVMQL 389

Query: 364 FKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLD 423
            +PIN T L    Y  G+DI  + +  +PG +L +D +KYFW+HH++ DTM+V D   ++
Sbjct: 390 LQPINITSLYD--YAEGTDINSWMQAGVPGASLFDDISKYFWFHHSQGDTMTVQDPVWMN 447

Query: 424 LCTALWGGVAYILADLSVELPR 445
           LC A+W  V+Y++AD+   LPR
Sbjct: 448 LCAAVWTVVSYVVADMEEMLPR 469

Carboxypeptidase that may play an important role in the hydrolysis of circulating peptides. Catalyzes more efficiently the hydrolysis of dipeptides with unsubstituted terminals into amino acids.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 4EC: .EC: 1EC: 7EC: .EC: -

>sp\|Q6IRK9\|CBPQ_RAT Carboxypeptidase Q OS=Rattus norvegicus GN=Cpq PE=1 SV=1	Back alignment and function description

>sp\|Q9Y646\|CBPQ_HUMAN Carboxypeptidase Q OS=Homo sapiens GN=CPQ PE=1 SV=1	Back alignment and function description

>sp\|Q5RDN7\|CBPQ_PONAB Carboxypeptidase Q OS=Pongo abelii GN=CPQ PE=2 SV=1	Back alignment and function description

>sp\|Q17QK3\|CBPQ_BOVIN Carboxypeptidase Q OS=Bos taurus GN=CPQ PE=2 SV=1	Back alignment and function description

>sp\|Q9WVJ3\|CBPQ_MOUSE Carboxypeptidase Q OS=Mus musculus GN=Cpq PE=2 SV=1	Back alignment and function description

>sp\|P25152\|BSAP_BACSU Aminopeptidase YwaD OS=Bacillus subtilis (strain 168) GN=ywaD PE=1 SV=2	Back alignment and function description

>sp\|Q4WFX9\|LAP2_ASPFU Probable leucine aminopeptidase 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=lap2 PE=3 SV=2	Back alignment and function description

>sp\|C5FTZ6\|LAP2_ARTOC Leucine aminopeptidase 2 OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=LAP2 PE=3 SV=1	Back alignment and function description

>sp\|A7UI10\|LAP2_TRITO Leucine aminopeptidase 2 OS=Trichophyton tonsurans GN=LAP2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		446
321458019		460	hypothetical protein DAPPUDRAFT_189393 [	0.903	0.876	0.489	1e-110
332373440		493	unknown [Dendroctonus ponderosae]	0.908	0.821	0.478	1e-107
328777785		476	PREDICTED: plasma glutamate carboxypepti	0.890	0.834	0.489	1e-107
380024765		472	PREDICTED: plasma glutamate carboxypepti	0.910	0.860	0.466	1e-106
66564326		479	PREDICTED: plasma glutamate carboxypepti	0.890	0.828	0.481	1e-105
380024763		475	PREDICTED: plasma glutamate carboxypepti	0.890	0.835	0.473	1e-105
345487037		610	PREDICTED: plasma glutamate carboxypepti	0.903	0.660	0.457	1e-104
260837077		458	hypothetical protein BRAFLDRAFT_71828 [B	0.943	0.919	0.432	1e-103
340725294		476	PREDICTED: plasma glutamate carboxypepti	0.955	0.894	0.454	1e-102
383851699		475	PREDICTED: plasma glutamate carboxypepti	0.890	0.835	0.481	1e-102

>gi\|321458019\|gb\|EFX69094.1\| hypothetical protein DAPPUDRAFT_189393 [Daphnia pulex]	Back alignment and taxonomy information

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/443 (48%), Positives = 279/443 (62%), Gaps = 40/443 (9%)

Query: 40  DYIDAEVNSYQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMV 99
           D +  E+  Y+P+V+ II A S  G F+  T+ TLA FVDKFG R+ GS+ LE SID+MV
Sbjct: 21  DDLTKEIARYKPIVEGIINA-SVNGVFKKRTWRTLARFVDKFGSRIAGSDNLEQSIDYMV 79

Query: 100 KESKDFGLE-VWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAE--- 155
              K   LE V TE    PKW R  E   L+ P    + +  LG S+GTP  GITA    
Sbjct: 80  DLLKKNQLENVHTEQALVPKWVRGRESCWLISPRLEKLNILGLGSSIGTPSKGITAHAVV 139

Query: 156 --------------VAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYS 201
                         V GKIVV+N+ ++SY +TVKYR  GA  A+K GAVATLIRSVTP+S
Sbjct: 140 VESFEELQKMGKEAVEGKIVVYNEPYISYEKTVKYRGYGAIEAAKLGAVATLIRSVTPFS 199

Query: 202 LATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRN 261
           + +PHTG Q Y   V  IPTA I+ E AEML+RM++ GD  +++ + ++ARN+    +RN
Sbjct: 200 IDSPHTGWQHYQENVTQIPTAAISIEVAEMLHRMFQAGDD-ILIYLFMEARNLPPVMSRN 258

Query: 262 TIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------G 302
           TI +I G + PDKVV+ SGHLDSWDVGQGAMDDGGGAFIS                    
Sbjct: 259 TIAEIIGHQHPDKVVLVSGHLDSWDVGQGAMDDGGGAFISWNALALLKILGLRPRRTLRS 318

Query: 303 ILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLR 362
           +LWTAEE+G VGA AY   H+ ++      MESD+GTF P GLS  GS +A CIL ++L+
Sbjct: 319 VLWTAEEEGLVGAAAYFHDHRNDVAAFDFVMESDEGTFQPLGLSFSGSHDAGCILKEILK 378

Query: 363 LFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTL 422
           L +P+NAT+   +    G DIE F    IPG ALLN N +YFWYHH++ D M+V D   L
Sbjct: 379 LMRPLNATQFA-TPMDGGPDIEYFTNVGIPGAALLNANERYFWYHHSQGDRMTVEDPINL 437

Query: 423 DLCTALWGGVAYILADLSVELPR 445
           D+CTALW   A+++ADLSV++PR
Sbjct: 438 DMCTALWAASAFVVADLSVDMPR 460

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|332373440\|gb\|AEE61861.1\| unknown [Dendroctonus ponderosae]	Back alignment and taxonomy information

>gi\|328777785\|ref\|XP_393631.3\| PREDICTED: plasma glutamate carboxypeptidase-like isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380024765\|ref\|XP_003696162.1\| PREDICTED: plasma glutamate carboxypeptidase-like [Apis florea]	Back alignment and taxonomy information

>gi\|66564326\|ref\|XP_393632.2\| PREDICTED: plasma glutamate carboxypeptidase-like isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380024763\|ref\|XP_003696161.1\| PREDICTED: plasma glutamate carboxypeptidase-like [Apis florea]	Back alignment and taxonomy information

>gi\|345487037\|ref\|XP_001601839.2\| PREDICTED: plasma glutamate carboxypeptidase-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|260837077\|ref\|XP_002613532.1\| hypothetical protein BRAFLDRAFT_71828 [Branchiostoma floridae] gi\|229298917\|gb\|EEN69541.1\| hypothetical protein BRAFLDRAFT_71828 [Branchiostoma floridae]	Back alignment and taxonomy information

>gi\|340725294\|ref\|XP_003401007.1\| PREDICTED: plasma glutamate carboxypeptidase-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|383851699\|ref\|XP_003701369.1\| PREDICTED: plasma glutamate carboxypeptidase-like [Megachile rotundata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		446
UNIPROTKB\|Q6GQ29		469	cpq "Carboxypeptidase Q" [Xeno	0.890	0.846	0.369	1.9e-60
RGD\|628610		472	Cpq "carboxypeptidase Q" [Ratt	0.755	0.713	0.382	2.2e-57
UNIPROTKB\|Q9Y646		472	CPQ "Carboxypeptidase Q" [Homo	0.746	0.705	0.376	2.3e-55
UNIPROTKB\|Q17QK3		472	CPQ "Carboxypeptidase Q" [Bos	0.744	0.703	0.372	6.1e-55
UNIPROTKB\|E2R599		472	CPQ "Uncharacterized protein"	0.744	0.703	0.377	9.9e-55
UNIPROTKB\|Q5RDN7		472	CPQ "Carboxypeptidase Q" [Pong	0.726	0.686	0.375	9.9e-55
MGI\|MGI:1889205		470	Cpq "carboxypeptidase Q" [Mus	0.755	0.717	0.377	1.3e-54
UNIPROTKB\|O76552		493	O76552 "Aminopeptidase ES-62"	0.641	0.580	0.342	2.3e-54
DICTYBASE\|DDB_G0285823		506	DDB_G0285823 "peptidase M28 do	0.811	0.715	0.352	4.9e-53
TIGR_CMR\|CPS_2554		469	CPS_2554 "peptidase, M28 famil	0.320	0.304	0.4	5.2e-45

UNIPROTKB\|Q6GQ29 cpq "Carboxypeptidase Q" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 165/447 (36%), Positives = 234/447 (52%)

Query:    40 DYIDAEVNSYQPVVDRII-AAVSQGGHFQAHTYSTL-ADFV-DKFGPRMTGSEALENSID 96
             + I  E++SY+ V   II  AV      +++    L  D V ++         A+     
Sbjct:    32 EMIKTEISSYKDVAKSIIDLAVHGKAQNRSYERLALFVDTVGNRMSGSENLKTAIAYMYK 91

Query:    97 FMVKESKDFGLEVWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEV 156
              + ++  D    V+ E V  P WER  E   L++P K  + +  LGGS+GTP  GI+AEV
Sbjct:    92 SLQEDDLD---RVYLEPVKVPHWERGEESAMLLEPRKKSLAILGLGGSIGTPVEGISAEV 148

Query:   157 A----------------GKIVVFNQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPY 200
                              GKIVV+N+ FV+YGETV+YR  GA  A+K GAVA+LIRSVTP 
Sbjct:   149 IVVSSFAELHNRSKEAKGKIVVYNEPFVNYGETVRYRGSGAVEAAKVGAVASLIRSVTPL 208

Query:   201 SLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTR 260
             S+ +PHTG Q Y+  V  IPTA I  E AEML RM  RG   +V+ + + A N    ++ 
Sbjct:   209 SVYSPHTGWQWYENDVPKIPTASITVEDAEMLSRMASRGL-KIVIQLKMGAVNHPDADSY 267

Query:   261 NTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFISGILWTAEEQGYVGAIAYVK 320
             NT+ +I G + P++VVI SGHLDSWDVGQGAMDDGGGAFIS   W  E    +  +    
Sbjct:   268 NTVAEIVGSKYPEQVVIVSGHLDSWDVGQGAMDDGGGAFIS---W--EALSLIKDLGLRP 322

Query:   321 KHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINA----------- 369
             K    L   T   +   G    + L  K       ++   +  F P+             
Sbjct:   323 KRTLRLVLWTGEEQGGVGASQYYELHKKNISNIDLVMESDIGTFMPLGMQFTGKPEARAI 382

Query:   370 -TRLVQSKYPV----------GSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLD 418
              T ++Q   P+          G+DI  + +  +PG +L +D +KYFW+HH++ DTM+V D
Sbjct:   383 MTEVMQLLQPINITSLYDYAEGTDINSWMQAGVPGASLFDDISKYFWFHHSQGDTMTVQD 442

Query:   419 SDTLDLCTALWGGVAYILADLSVELPR 445
                ++LC A+W  V+Y++AD+   LPR
Sbjct:   443 PVWMNLCAAVWTVVSYVVADMEEMLPR 469

GO:0005615 "extracellular space" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043171 "peptide catabolic process" evidence=ISS

GO:0070573 "metallodipeptidase activity" evidence=ISS

RGD\|628610 Cpq "carboxypeptidase Q" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y646 CPQ "Carboxypeptidase Q" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q17QK3 CPQ "Carboxypeptidase Q" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R599 CPQ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5RDN7 CPQ "Carboxypeptidase Q" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

MGI\|MGI:1889205 Cpq "carboxypeptidase Q" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O76552 O76552 "Aminopeptidase ES-62" [Acanthocheilonema viteae (taxid:6277)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285823 DDB_G0285823 "peptidase M28 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_2554 CPS_2554 "peptidase, M28 family" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y646	CBPQ_HUMAN	3, ., 4, ., 1, 7, ., -	0.4209	0.8766	0.8283	yes	N/A
Q9WVJ3	CBPQ_MOUSE	3, ., 4, ., 1, 7, ., -	0.4081	0.8991	0.8531	yes	N/A
Q17QK3	CBPQ_BOVIN	3, ., 4, ., 1, 7, ., -	0.4063	0.9551	0.9025	yes	N/A
Q5RDN7	CBPQ_PONAB	3, ., 4, ., 1, 7, ., -	0.4172	0.8991	0.8495	yes	N/A
Q6IRK9	CBPQ_RAT	3, ., 4, ., 1, 7, ., -	0.4217	0.8991	0.8495	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.17	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		446
cd03883		276	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl	6e-76
cd04815		134	cd04815, PA_M28_2, PA_M28_2: Protease-associated (	5e-45
cd02690		252	cd02690, M28, M28 Zn-peptidases include aminopepti	7e-27
cd08015		275	cd08015, M28_like_4, M28 Zn-Peptidases	1e-25
cd03883		276	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl	2e-19
pfam04389		173	pfam04389, Peptidase_M28, Peptidase family M28	4e-17
COG2234		435	COG2234, Iap, Predicted aminopeptidases [General f	6e-09
cd08022		286	cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-	1e-08
cd03876		288	cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomy	3e-07
cd05643		288	cd05643, M28_like_7, M28 Zn-Peptidases	8e-07
cd03874		279	cd03874, M28_PMSA_TfR_like, M28 Zn-peptidase Trans	2e-06
cd03877		254	cd03877, M28_like_PA, M28 Zn-Peptidases containing	7e-06
cd05660		306	cd05660, M28_like_PA_1, M28 Zn-Peptidases containi	7e-04
cd08015		275	cd08015, M28_like_4, M28 Zn-Peptidases	0.001
cd05642		348	cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas	0.002

>gnl\|CDD\|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	Back alignment and domain information

 Score =  238 bits (609), Expect = 6e-76
 Identities = 80/204 (39%), Positives = 109/204 (53%), Gaps = 20/204 (9%)

Query: 256 TTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------- 301
              + N I +I+G E P+++V+  GHLDSWDVG GA+DDG G  IS              
Sbjct: 74  LAPSGNVIAEIKGSEYPEEIVLVGGHLDSWDVGTGAIDDGAGVAISMEAAKLIKDLGLRP 133

Query: 302 -----GILWTAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACI 356
                 +LWTAEE G  GA AY + H++EL+N  VA+ESD G FTP G    G+  A  +
Sbjct: 134 KRTIRVVLWTAEENGLRGAKAYAEAHKDELENHVVALESDFGAFTPRGWGFTGNDAARPL 193

Query: 357 LNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSV 416
           + ++ +L  P+  T   +S    G DI   +   +PGV+L  D   YF YHHT  DT+  
Sbjct: 194 VKEIAKLLAPLGITPG-RSGAGGGPDISPLRAAGVPGVSLRQDGTDYFDYHHTADDTLDK 252

Query: 417 LDSDTLDLCTALWGGVAYILADLS 440
           +D   L    A W  +AY+LAD  
Sbjct: 253 VDPKELAQNVAAWAVMAYLLADSD 276

Peptidase M28 family; Plasma glutamate carboxypeptidase (PGCP; blood plasma glutamate carboxypeptidase; EC 3.4.17.21) subfamily. PGCP is a 56kDa glutamate carboxypeptidase that is mainly produced in mammalian placenta and kidney, the majority of which is thought to be secreted into the bloodstream. Similar proteins are also found in other species, including bacteria. These proteins contain protease-associated (PA) domain inserts between the first and second strands of the central beta sheet in the protease-like domain. The PA domains may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. The exact physiological substrates of PGCP are unknown, although this enzyme may play an important role in the hydrolysis of circulating peptides. Its closest homolog encodes an important brain glutamate carboxypeptidase II (NAALADase) identical to the prostate-specific membrane antigen (PSMA), which serves as a marker for prostatic cancer metastasis. However, PGCP has not been linked to any type of cancer. It provides an attractive target for serological analysis in hepatitis C virus (HCV)-induced hepatocellular carcinoma (HCC) patients. Length = 276

>gnl\|CDD\|240119 cd04815, PA_M28_2, PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>gnl\|CDD\|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases	Back alignment and domain information

>gnl\|CDD\|193563 cd08015, M28_like_4, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	Back alignment and domain information

>gnl\|CDD\|218057 pfam04389, Peptidase_M28, Peptidase family M28	Back alignment and domain information

>gnl\|CDD\|225143 COG2234, Iap, Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|193568 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-specific membrane antigen	Back alignment and domain information

>gnl\|CDD\|193498 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus Aminopeptidase and similar proteins	Back alignment and domain information

>gnl\|CDD\|193521 cd05643, M28_like_7, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193496 cd03874, M28_PMSA_TfR_like, M28 Zn-peptidase Transferrin Receptor-like family	Back alignment and domain information

>gnl\|CDD\|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193536 cd05660, M28_like_PA_1, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193563 cd08015, M28_like_4, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193520 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase (AAP)-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		446
KOG2195\|consensus		702		100.0
COG4882		486	Predicted aminopeptidase, Iap family [General func	99.96
PF04389		179	Peptidase_M28: Peptidase family M28; InterPro: IPR	99.94
PRK10199		346	alkaline phosphatase isozyme conversion aminopepti	99.94
COG2234		435	Iap Predicted aminopeptidases [General function pr	99.82
KOG2194\|consensus		834		99.67
cd04815		134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	99.66
KOG3946\|consensus		338		99.43
PF09940		386	DUF2172: Domain of unknown function (DUF2172); Int	99.3
cd04819		127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.28
cd04816		122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.25
cd02130		122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.19
PF05450		234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	99.14
cd02126		126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.05
cd02129		120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.03
cd02127		118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	98.99
cd02132		139	PA_GO-like PA_GO-like: Protease-associated domain	98.97
cd04817		139	PA_VapT_like PA_VapT_like: Protease-associated dom	98.96
cd02122		138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	98.91
cd02128		183	PA_TfR PA_TfR: Protease-associated domain containi	98.89
cd02125		127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	98.82
cd02124		129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	98.76
cd00538		126	PA PA: Protease-associated (PA) domain. The PA dom	98.76
cd04818		118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	98.75
cd02131		153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	98.72
cd02121		220	PA_GCPII_like PA_GCPII_like: Protease-associated d	98.65
PF02225		101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	98.64
cd04813		117	PA_1 PA_1: Protease-associated (PA) domain subgrou	98.52
KOG2526\|consensus		555		98.51
cd02123		153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	98.5
COG4310		435	Uncharacterized protein conserved in bacteria with	98.48
cd02133		143	PA_C5a_like PA_C5a_like: Protease-associated domai	98.39
cd02120		126	PA_subtilisin_like PA_subtilisin_like: Protease-as	98.21
TIGR03176		406	AllC allantoate amidohydrolase. This enzyme cataly	97.89
PF01546		189	Peptidase_M20: Peptidase family M20/M25/M40 This f	97.84
TIGR01879		401	hydantase amidase, hydantoinase/carbamoylase famil	97.78
cd04814		142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	97.62
cd04822		151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	97.61
cd04821		157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	97.54
COG1363		355	FrvX Cellulase M and related proteins [Carbohydrat	97.51
PRK12890		414	allantoate amidohydrolase; Reviewed	97.44
PRK07338		402	hypothetical protein; Provisional	97.42
PRK13799		591	unknown domain/N-carbamoyl-L-amino acid hydrolase	97.4
PRK13590		591	putative bifunctional OHCU decarboxylase/allantoat	97.4
PRK06133		410	glutamate carboxypeptidase; Reviewed	97.38
PF05343		292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	97.33
cd04820		137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	97.32
PRK09133		472	hypothetical protein; Provisional	97.3
TIGR01910		375	DapE-ArgE acetylornithine deacetylase or succinyl-	97.19
PRK13983		400	diaminopimelate aminotransferase; Provisional	97.14
PRK12891		414	allantoate amidohydrolase; Reviewed	97.13
PRK07906		426	hypothetical protein; Provisional	97.1
TIGR01883		361	PepT-like peptidase T-like protein. This model rep	96.98
KOG2442\|consensus		541		96.97
PRK12892		412	allantoate amidohydrolase; Reviewed	96.81
PRK12893		412	allantoate amidohydrolase; Reviewed	96.81
PRK08596		421	acetylornithine deacetylase; Validated	96.78
PRK09290		413	allantoate amidohydrolase; Reviewed	96.71
PRK13381		404	peptidase T; Provisional	96.65
PRK08262		486	hypothetical protein; Provisional	96.58
TIGR03107		350	glu_aminopep glutamyl aminopeptidase. This model r	96.57
KOG2657\|consensus		596		96.51
TIGR01893		477	aa-his-dipept aminoacyl-histidine dipeptidase.	96.42
PRK09961		344	exoaminopeptidase; Provisional	96.39
TIGR01892		364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	96.34
PRK09104		464	hypothetical protein; Validated	96.29
PRK09864		356	putative peptidase; Provisional	96.27
PRK07522		385	acetylornithine deacetylase; Provisional	96.26
PRK07907		449	hypothetical protein; Provisional	96.22
PRK07473		376	carboxypeptidase; Provisional	96.09
PRK08588		377	succinyl-diaminopimelate desuccinylase; Reviewed	96.02
PRK06915		422	acetylornithine deacetylase; Validated	95.96
PRK08554		438	peptidase; Reviewed	95.93
PRK06446		436	hypothetical protein; Provisional	95.86
PRK13013		427	succinyl-diaminopimelate desuccinylase; Reviewed	95.82
PRK08201		456	hypothetical protein; Provisional	95.7
PRK06837		427	acetylornithine deacetylase; Provisional	95.6
PRK13007		352	succinyl-diaminopimelate desuccinylase; Reviewed	95.5
PRK15026		485	aminoacyl-histidine dipeptidase; Provisional	95.37
PRK13009		375	succinyl-diaminopimelate desuccinylase; Reviewed	95.36
PRK07079		469	hypothetical protein; Provisional	95.21
TIGR01886		466	dipeptidase dipeptidase PepV. This model represent	95.15
TIGR01880		400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	95.14
PRK07318		466	dipeptidase PepV; Reviewed	95.08
PRK05469		408	peptidase T; Provisional	95.06
PRK05111		383	acetylornithine deacetylase; Provisional	94.91
TIGR01882		410	peptidase-T peptidase T. This model represents a t	94.84
COG0624		409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	94.76
TIGR01902		336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	94.57
PRK00466		346	acetyl-lysine deacetylase; Validated	94.36
PRK08652		347	acetylornithine deacetylase; Provisional	94.33
PRK08651		394	succinyl-diaminopimelate desuccinylase; Reviewed	94.21
COG4187		553	RocB Arginine degradation protein (predicted deacy	94.18
TIGR01891		363	amidohydrolases amidohydrolase. This model represe	93.74
PRK06156		520	hypothetical protein; Provisional	93.74
PRK04443		348	acetyl-lysine deacetylase; Provisional	93.73
KOG2275\|consensus		420		93.13
TIGR01246		370	dapE_proteo succinyl-diaminopimelate desuccinylase	92.96
PRK13004		399	peptidase; Reviewed	92.93
KOG3946\|consensus		338		92.91
PRK08737		364	acetylornithine deacetylase; Provisional	92.38
PRK07205		444	hypothetical protein; Provisional	92.24
KOG4628\|consensus		348		92.07
TIGR03106		343	trio_M42_hydro hydrolase, peptidase M42 family. Th	91.83
TIGR01887		447	dipeptidaselike dipeptidase, putative. This model	91.52
TIGR01900		373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	90.35
KOG3920\|consensus		193		89.74
PRK06133		410	glutamate carboxypeptidase; Reviewed	88.21
PLN02693		437	IAA-amino acid hydrolase	85.3
PLN02280		478	IAA-amino acid hydrolase	85.2
TIGR03526		395	selenium_YgeY putative selenium metabolism hydrola	84.54
TIGR03320		395	ygeY M20/DapE family protein YgeY. Members of this	83.43
PF04114		504	Gaa1: Gaa1-like, GPI transamidase component ; Inte	80.28

>KOG2195\|consensus	Back alignment and domain information

Probab=100.00  E-value=4e-34  Score=304.59  Aligned_cols=359  Identities=24%  Similarity=0.326  Sum_probs=249.8

Q ss_pred             HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeee----cccEE-------EEeCC-------C
Q psy9208          72 STLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWTENVTAPKWER----HFEKV-------TLVKP-------W  132 (446)
Q Consensus        72 ~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~----~~~~l-------~~~~~-------~  132 (446)
                      ..+..++.  .++++||.....++.++..++.+.|++ ++.-.|.+....+    .+.-+       .+.+.       .
T Consensus        60 ~~l~~~~~--~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~~~i~~s~~~~~~~~  137 (702)
T KOG2195|consen   60 KNLNAFTL--RPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKDLEIFSSMPHELQVD  137 (702)
T ss_pred             hccchhhh--hhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceecccccceeeccchhcccCC
Confidence            33444443  589999999999999999999999997 6666665543222    11111       11100       0


Q ss_pred             Cce-eeEEecCCCCCCCCCCcee---------------------eccccEEEEecCCcCcchhhhhhhhhHHHHHHcCcE
Q psy9208         133 KSD-IPVSTLGGSVGTPQGGITA---------------------EVAGKIVVFNQDFVSYGETVKYRSKGASVASKYGAV  190 (446)
Q Consensus       133 ~~~-~~~~~l~~s~~t~~~gi~a---------------------~v~GkIvlv~~~~~~yg~~~~~~~~~~~~A~~~GA~  190 (446)
                      |.+ .+...-++....+.+..++                     .++|||++++.+..       ++.+++++|.++||.
T Consensus       138 Gd~~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i-------~~g~~~~na~~~~a~  210 (702)
T KOG2195|consen  138 GDEALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKI-------YRGKKVKNAEAAGAD  210 (702)
T ss_pred             CcccCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEcccc-------chhhhHhhHHHhhcC
Confidence            000 0111111111111111111                     17799999876633       344559999999999


Q ss_pred             EEEEeccCCC------------C-CCCCCCccc----------------cC---------------CCCCCCCCEeEcCH
Q psy9208         191 ATLIRSVTPY------------S-LATPHTGHQ----------------SY---------------DAAVKPIPTACIAP  226 (446)
Q Consensus       191 avii~~~~~~------------~-~~~p~~g~~----------------~~---------------~~~~~~iP~~~Is~  226 (446)
                      |||+|.+...            . +..|..+.+                +|               ....|.||+.+||.
T Consensus       211 gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~  290 (702)
T KOG2195|consen  211 GVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSPDAKFSGGLPKIPSLPISA  290 (702)
T ss_pred             cEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCChhhhhcCCCCCCCCcCccc
Confidence            9999986321            0 101111110                00               12267899999999


Q ss_pred             HHHHHHHHHHhCCCCc---------------eEEEEEEEeEEeCCceeceEEEEEcCcCCCCcEEEEEecCCCCCCCCCc
Q psy9208         227 EYAEMLYRMYRRGDGP---------------VVVSINIDARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGA  291 (446)
Q Consensus       227 ~~~~~L~~~l~~g~~p---------------v~v~l~~~~~~~~~~~s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga  291 (446)
                      ++++.|.+++..+-+|               ....+.+.....+..+++||||.|+|++.||++|+||+|+|||..  ||
T Consensus       291 ~~ae~l~~~~~g~~~~~~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~ViigahrDSw~~--Ga  368 (702)
T KOG2195|consen  291 EDAEILLRLLGGGVKPDGLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRYVIIGAHRDSWTF--GA  368 (702)
T ss_pred             hhHHHHHHHhCCCcccccccCccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeEEEEecccccccc--CC
Confidence            9999999988643220               011111110124678999999999998899999999999999987  79


Q ss_pred             ccCCCceeeE----------------------EEeeCccccccccHHHHHHHhHhhh-cceEEEEEecCCCCCccceeee
Q psy9208         292 MDDGGGAFIS----------------------GILWTAEEQGYVGAIAYVKKHQEEL-KNITVAMESDDGTFTPFGLSLK  348 (446)
Q Consensus       292 ~DngsG~a~l----------------------f~~~~aEE~Gl~GS~~y~~~~~~~~-~~i~~~in~D~g~~~~~~~~~~  348 (446)
                      +|.++|+++|                      |++|+|||+|++||..|++.+...+ .+++++||+|+...++..+...
T Consensus       369 ~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~  448 (702)
T KOG2195|consen  369 IDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK  448 (702)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe
Confidence            9999999876                      9999999999999999999998665 6899999999977776789999


Q ss_pred             cChhHHHHHHHHHHHhCC-CCCcc---ccCCCCCCCCchHhHHh-CCCeEEEeeeCCCCCCCCCcCCCCCcC---C-CCH
Q psy9208         349 GSPEAACILNKVLRLFKP-INATR---LVQSKYPVGSDIELFQE-KNIPGVALLNDNAKYFWYHHTRADTMS---V-LDS  419 (446)
Q Consensus       349 gs~~l~~l~~~~~~~~~~-~~~~~---~~~~~~~~gSD~~~F~~-~GIP~~~l~~~~~~y~~~yHt~~Dt~d---~-ld~  419 (446)
                      ++|.+.+++++.++.+.. .....   +..++  .+|||.+|.. +|||++.+.+.. .| |+|||..||++   + +|+
T Consensus       449 ~~PlL~~li~~~~k~~~~p~~~~~~~~v~~~g--~~Sd~~~F~~~~GIpsv~~~f~~-~y-P~yhs~~dt~~~~~k~~D~  524 (702)
T KOG2195|consen  449 TTPLLTDLIEEAAKSVLSPDKGDQSNRVLSLG--GGSDYASFLQFAGIPSVDFAFNR-TY-PFYHSTYDTYEWLDKLLDP  524 (702)
T ss_pred             cCccHHHHHHHHHhccCCCCccccceeEeccC--CCCcchhhccccCcceeeeeecC-Cc-ceeecccCcHHHHHHhcch
Confidence            999999999999987542 22222   33344  6799999996 999999998865 66 89999999944   4 355


Q ss_pred             H--HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy9208         420 D--TLDLCTALWGGVAYILADLSVELPRT  446 (446)
Q Consensus       420 ~--~l~~~~~~~a~~~~~lA~~~~~~p~~  446 (446)
                      .  .+..++.++...++.+++ +.-+|.+
T Consensus       525 ~~~~~~~~a~~~~~~~l~l~~-d~llPfd  552 (702)
T KOG2195|consen  525 KFKQHLAAAGVLGLELLILAD-DPLLPFD  552 (702)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-CccccCc
Confidence            4  466677778888888888 7767764

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]	Back alignment and domain information

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional	Back alignment and domain information

>COG2234 Iap Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>KOG2194\|consensus	Back alignment and domain information

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>KOG3946\|consensus	Back alignment and domain information

>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis	Back alignment and domain information

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2	Back alignment and domain information

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch	Back alignment and domain information

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530	Back alignment and domain information

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)	Back alignment and domain information

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>cd00538 PA PA: Protease-associated (PA) domain	Back alignment and domain information

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)	Back alignment and domain information

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like	Back alignment and domain information

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []	Back alignment and domain information

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>KOG2526\|consensus	Back alignment and domain information

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]	Back alignment and domain information

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>TIGR03176 AllC allantoate amidohydrolase	Back alignment and domain information

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family	Back alignment and domain information

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1	Back alignment and domain information

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3	Back alignment and domain information

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2	Back alignment and domain information

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK12890 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK07338 hypothetical protein; Provisional	Back alignment and domain information

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional	Back alignment and domain information

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	Back alignment and domain information

>PRK06133 glutamate carboxypeptidase; Reviewed	Back alignment and domain information

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1	Back alignment and domain information

>PRK09133 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>PRK13983 diaminopimelate aminotransferase; Provisional	Back alignment and domain information

>PRK12891 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK07906 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01883 PepT-like peptidase T-like protein	Back alignment and domain information

>KOG2442\|consensus	Back alignment and domain information

>PRK12892 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK12893 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK08596 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK09290 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK13381 peptidase T; Provisional	Back alignment and domain information

>PRK08262 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03107 glu_aminopep glutamyl aminopeptidase	Back alignment and domain information

>KOG2657\|consensus	Back alignment and domain information

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase	Back alignment and domain information

>PRK09961 exoaminopeptidase; Provisional	Back alignment and domain information

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)	Back alignment and domain information

>PRK09104 hypothetical protein; Validated	Back alignment and domain information

>PRK09864 putative peptidase; Provisional	Back alignment and domain information

>PRK07522 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK07907 hypothetical protein; Provisional	Back alignment and domain information

>PRK07473 carboxypeptidase; Provisional	Back alignment and domain information

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK06915 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK08554 peptidase; Reviewed	Back alignment and domain information

>PRK06446 hypothetical protein; Provisional	Back alignment and domain information

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK08201 hypothetical protein; Provisional	Back alignment and domain information

>PRK06837 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK15026 aminoacyl-histidine dipeptidase; Provisional	Back alignment and domain information

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK07079 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01886 dipeptidase dipeptidase PepV	Back alignment and domain information

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	Back alignment and domain information

>PRK07318 dipeptidase PepV; Reviewed	Back alignment and domain information

>PRK05469 peptidase T; Provisional	Back alignment and domain information

>PRK05111 acetylornithine deacetylase; Provisional	Back alignment and domain information

>TIGR01882 peptidase-T peptidase T	Back alignment and domain information

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase	Back alignment and domain information

>PRK00466 acetyl-lysine deacetylase; Validated	Back alignment and domain information

>PRK08652 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01891 amidohydrolases amidohydrolase	Back alignment and domain information

>PRK06156 hypothetical protein; Provisional	Back alignment and domain information

>PRK04443 acetyl-lysine deacetylase; Provisional	Back alignment and domain information

>KOG2275\|consensus	Back alignment and domain information

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade	Back alignment and domain information

>PRK13004 peptidase; Reviewed	Back alignment and domain information

>KOG3946\|consensus	Back alignment and domain information

>PRK08737 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK07205 hypothetical protein; Provisional	Back alignment and domain information

>KOG4628\|consensus	Back alignment and domain information

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family	Back alignment and domain information

>TIGR01887 dipeptidaselike dipeptidase, putative	Back alignment and domain information

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>KOG3920\|consensus	Back alignment and domain information

>PRK06133 glutamate carboxypeptidase; Reviewed	Back alignment and domain information

>PLN02693 IAA-amino acid hydrolase	Back alignment and domain information

>PLN02280 IAA-amino acid hydrolase	Back alignment and domain information

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase	Back alignment and domain information

>TIGR03320 ygeY M20/DapE family protein YgeY	Back alignment and domain information

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		446
3iib_A		444	Crystal Structure Of Peptidase M28 Precursor (Yp_92		1e-46
2ek8_A		421	Aminopeptidase From Aneurinibacillus Sp. Strain Am-		2e-06

>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1) From Shewanella Amazonensis Sb2b At 1.70 A Resolution Length = 444

Back alignment and structure

Iteration: 1

Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/432 (28%), Positives = 206/432 (47%), Gaps = 45/432 (10%) Query: 55 RIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWTEN 113 ++ ++Q + Y + + GPR+ GSE + ++D+ + + + G + V+ E Sbjct: 8 KVAEQLAQKAQSSSLGYDIVESLTVEVGPRLAGSEQDKVAVDWAIAKLQSLGFDRVYKEP 67 Query: 114 VTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAEV-------------AGKI 160 VT P W R K +++ P+ + V+ LGGS+ TP G++A + AG + Sbjct: 68 VTVPVWRRGIAKASILSPFPQPLVVTALGGSIATPAQGLSATIVRFDTLQDLQNAEAGSL 127 Query: 161 ---VVF-------NQDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLATPHTGHQ 210 + F ++D YG+T RS+GA A++ GAV +IRS+ HTG Sbjct: 128 NDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRXAHTGXX 187 Query: 211 SYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIRGRE 270 Y+ V IP A I+ A+++ +R D VV+S+ + + G T + N I +++G Sbjct: 188 RYEEGVTAIPAAAISNPDADLINAXLKR-DKEVVISLELGSERRGETTSYNVIAEVKGST 246 Query: 271 CPDKVVITSGHLDSWDVGQGAMDDGGGAFISG-------------------ILWTAEEQG 311 D++V+ HLDSWD G GA+DDG G I +L+ AEE G Sbjct: 247 KADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELG 306 Query: 312 YVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATR 371 +G Y K+H+ EL+ +A ESD G + + + + A + ++ +P+ Sbjct: 307 LLGGKTYAKEHEAELEKHYIAAESDFGAGPIYQIDWRVADTAHSPVINAXKVAEPLGVA- 365 Query: 372 LVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLCTALWGG 431 +K G D+ +P +L D + YF YHHT DT+ ++ + L A++ Sbjct: 366 AGNNKASGGPDVSXLPALGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQ 425 Query: 432 VAYILADLSVEL 443 A++ A+ VEL Sbjct: 426 FAWVXANSKVEL 437

PyMOL of 3iib

>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 Length = 421

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		446
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	1e-100
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	2e-70
3kas_A		640	Transferrin receptor protein 1; transferrin recept	1e-28
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	1e-26
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	2e-20
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	5e-15
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	4e-07
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	1e-05
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	1e-04

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Length = 444	Back alignment and structure

 Score =  305 bits (782), Expect = e-100
 Identities = 120/440 (27%), Positives = 207/440 (47%), Gaps = 45/440 (10%)

Query: 49  YQPVVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE 108
              +  ++   ++Q     +  Y  +     + GPR+ GSE  + ++D+ + + +  G +
Sbjct: 2   SDDINQKVAEQLAQKAQSSSLGYDIVESLTVEVGPRLAGSEQDKVAVDWAIAKLQSLGFD 61

Query: 109 -VWTENVTAPKWERHFEKVTLVKPWKSDIPVSTLGGSVGTPQGGITAE------------ 155
            V+ E VT P W R   K +++ P+   + V+ LGGS+ TP  G++A             
Sbjct: 62  RVYKEPVTVPVWRRGIAKASILSPFPQPLVVTALGGSIATPAQGLSATIVRFDTLQDLQN 121

Query: 156 -----VAGKIVVFN------QDFVSYGETVKYRSKGASVASKYGAVATLIRSVTPYSLAT 204
                +  KI   +      +D   YG+T   RS+GA  A++ GAV  +IRS+       
Sbjct: 122 AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRM 181

Query: 205 PHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIV 264
            HTG   Y+  V  IP A I+   A+++  M +R    VV+S+ + +   G T + N I 
Sbjct: 182 AHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDK-EVVISLELGSERRGETTSYNVIA 240

Query: 265 QIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILW 305
           +++G    D++V+   HLDSWD G GA+DDG G  I                     +L+
Sbjct: 241 EVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLY 300

Query: 306 TAEEQGYVGAIAYVKKHQEELKNITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFK 365
            AEE G +G   Y K+H+ EL+   +A ESD G    + +  + +  A   +   +++ +
Sbjct: 301 AAEELGLLGGKTYAKEHEAELEKHYIAAESDFGAGPIYQIDWRVADTAHSPVINAMKVAE 360

Query: 366 PINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHHTRADTMSVLDSDTLDLC 425
           P+       +K   G D+ +     +P  +L  D + YF YHHT  DT+  ++ + L   
Sbjct: 361 PLGVAAGN-NKASGGPDVSMLPALGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQN 419

Query: 426 TALWGGVAYILADLSVELPR 445
            A++   A+++A+  VEL  
Sbjct: 420 VAVYAQFAWVMANSKVELRP 439

PyMOL of 3iib

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309	Back alignment and structure

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		446
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	100.0
3kas_A		640	Transferrin receptor protein 1; transferrin recept	100.0
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	100.0
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	100.0
4fuu_A		309	Leucine aminopeptidase; phosphorylase/hydrolase li	100.0
4f9u_A		312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	100.0
4fai_A		330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	99.97
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	99.96
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	99.96
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	99.96
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	99.96
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	99.94
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	99.94
3k9t_A		435	Putative peptidase; structural genomics, joint cen	99.9
4h2k_A		269	Succinyl-diaminopimelate desuccinylase; DAPE, MCSG	99.21
3t68_A		268	Succinyl-diaminopimelate desuccinylase; DAPE, csgi	99.21
1y0y_A		353	FRV operon protein FRVX; aminopeptidase, PDZ, hydr	99.06
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.01
1vhe_A		373	Aminopeptidase/glucanase homolog; structural genom	98.97
2wyr_A		332	Cobalt-activated peptidase TET1; hydrolase, large	98.96
2fvg_A		340	Endoglucanase; TM1049, structural genomics, joint	98.91
2gre_A		349	Deblocking aminopeptidase; structural genomi prote	98.88
1q7l_A		198	Aminoacylase-1; catalysis, enzyme dimerization, si	98.26
1ylo_A		348	Hypothetical protein SF2450; structural genomics,	98.18
3cpx_A		321	Aminopeptidase, M42 family; YP_676701.1, putative	97.98
1vho_A		346	Endoglucanase; structural genomics, unknown functi	97.94
3gb0_A		373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	97.83
3rza_A		396	Tripeptidase; phosphorylase/hydrolase-like, struct	97.83
2zog_A		479	Cytosolic non-specific dipeptidase; metallopeptida	97.75
3kl9_A		355	PEPA, glutamyl aminopeptidase; tetrahedral aminope	97.73
3ct9_A		356	Acetylornithine deacetylase; NP_812461.1, A putati	97.67
2pok_A		481	Peptidase, M20/M25/M40 family; M20 family peptidas	97.65
3n5f_A		408	L-carbamoylase, N-carbamoyl-L-amino acid hydrolase	97.58
1cg2_A		393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	97.53
3dlj_A		485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	97.52
3pfo_A		433	Putative acetylornithine deacetylase; metal bindin	97.25
2vpu_A		354	TET3, 354AA long hypothetical operon protein FRV;	97.2
3pfe_A		472	Succinyl-diaminopimelate desuccinylase; metal bind	97.01
3tx8_A		369	Succinyl-diaminopimelate desuccinylase; peptidase,	96.95
2wzn_A		354	TET3, 354AA long hypothetical operon protein FRV;	96.94
1z2l_A		423	Allantoate amidohydrolase; ALLC, purine cataboli a	96.86
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	96.8
1vgy_A		393	Succinyl-diaminopimelate desuccinylase; structural	96.78
2v8h_A		474	Beta-alanine synthase; amidohydrolase, alpha and b	96.78
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	96.75
2f7v_A		369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	96.75
4fai_A		330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	96.69
3mru_A		490	Aminoacyl-histidine dipeptidase; metalloprotease,	96.67
3khx_A		492	Putative dipeptidase sacol1801; DAPE, metallopepti	96.61
3isz_A		377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	96.48
3ife_A		434	Peptidase T; metallopeptidase, aminopeptidase, hyd	96.4
2rb7_A		364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	96.39
1xmb_A		418	IAA-amino acid hydrolase homolog 2; structural gen	96.23
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	96.13
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	96.0
2qyv_A		487	XAA-His dipeptidase; YP_718209.1, structural genom	95.95
3ram_A		394	HMRA protein; two-domain, catalytic (alpha-beta-al	95.78
1ysj_A		404	Protein YXEP; M20 family peptidase, dinuclear meta	95.63
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	95.62
1lfw_A		470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	95.61
1fno_A		417	Peptidase T; metallo peptidase, protease, hydrolas	95.49
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	95.0
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	94.36
3isx_A		343	Endoglucanase; TM1050, structural genomics, joint	94.26
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	93.5
3io1_A		445	Aminobenzoyl-glutamate utilization protein; peptid	93.46
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	91.28
2ijz_A		428	Probable M18-family aminopeptidase 2; putative ami	86.32
1q7l_B		88	Aminoacylase-1; catalysis, enzyme dimerization, si	82.26

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

Probab=100.00  E-value=1.1e-68  Score=555.27  Aligned_cols=389  Identities=31%  Similarity=0.556  Sum_probs=340.0

Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEEEEeceeeecccEEEEeC
Q psy9208          52 VVDRIIAAVSQGGHFQAHTYSTLADFVDKFGPRMTGSEALENSIDFMVKESKDFGLE-VWTENVTAPKWERHFEKVTLVK  130 (446)
Q Consensus        52 ~~~~l~~~~~~~g~~~~~~~~~l~~ls~~~g~R~~GS~g~~~a~~~i~~~l~~~Gl~-v~~q~f~~~~w~~~~~~l~~~~  130 (446)
                      .+++|++++ +   ..++.|++|++|++.+|+|++||+|+++|++||+++|+++||+ |++|+|+++.|.++.+++++..
T Consensus         9 ~~~~i~~~~-~---~~~~~~~~l~~l~~~~G~R~~GS~g~~~a~~~i~~~l~~~G~~~v~~q~f~~~~w~~~~~~~~~~~   84 (444)
T 3iib_A            9 VAEQLAQKA-Q---SSSLGYDIVESLTVEVGPRLAGSEQDKVAVDWAIAKLQSLGFDRVYKEPVTVPVWRRGIAKASILS   84 (444)
T ss_dssp             HHHHHHHHH-H---HCCHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHH-h---cccHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHcCCCceEeeeEEeccEEecceEEEEeC
Confidence            457788887 3   4679999999999989999999999999999999999999995 9999999999999888899888


Q ss_pred             CCCceeeEEecCCCCCCCCCCceee-----------------ccccEEEEecCCcC------cchhhhhhhhhHHHHHHc
Q psy9208         131 PWKSDIPVSTLGGSVGTPQGGITAE-----------------VAGKIVVFNQDFVS------YGETVKYRSKGASVASKY  187 (446)
Q Consensus       131 ~~~~~~~~~~l~~s~~t~~~gi~a~-----------------v~GkIvlv~~~~~~------yg~~~~~~~~~~~~A~~~  187 (446)
                      |.++.+.+.+++||++||+++++++                 ++|||||++++.|.      |+.....|..++.+|.++
T Consensus        85 ~~~~~~~~~~l~~s~~tp~~~vta~lV~v~~~~~~~~~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~a  164 (444)
T 3iib_A           85 PFPQPLVVTALGGSIATPAQGLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEK  164 (444)
T ss_dssp             SSCEEECEEECBTCCCCCTTCEEEEEEEESSHHHHHTSCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEeccCCCCCCCCCeEEEEEecCCHHHHhhccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHC
Confidence            8888899999999999999888874                 79999999998875      443332333336789999


Q ss_pred             CcEEEEEeccCCCCCCCCCCccccCCCCCCCCCEeEcCHHHHHHHHHHHhCCCCceEEEEEEEeEEeCCceeceEEEEEc
Q psy9208         188 GAVATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINIDARNVGTTNTRNTIVQIR  267 (446)
Q Consensus       188 GA~avii~~~~~~~~~~p~~g~~~~~~~~~~iP~~~Is~~~~~~L~~~l~~g~~pv~v~l~~~~~~~~~~~s~NVia~i~  267 (446)
                      ||+|+|++++.++....|++|..++.+..+.||+++|+.++|+.|+++++.|++ +++++.+++...+..+++||||+++
T Consensus       165 GA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~-~~v~l~~~~~~~~~~~~~Nvi~~~~  243 (444)
T 3iib_A          165 GAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKE-VVISLELGSERRGETTSYNVIAEVK  243 (444)
T ss_dssp             TCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCC-CEEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCC-eEEEEEEeeeEcCCceeEEEEEEEe
Confidence            999999999876555568888777766678899999999999999999998877 8899999877545689999999999


Q ss_pred             CcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCccccccccHHHHHHHhHhhhcc
Q psy9208         268 GRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQGYVGAIAYVKKHQEELKN  328 (446)
Q Consensus       268 G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~GS~~y~~~~~~~~~~  328 (446)
                      |++.++++|++++|+|||+.||||+||++|++++                   |+||++||.|++||++|++++..++++
T Consensus       244 g~~~~~~~i~~~aH~Ds~~~g~Ga~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl~Gs~~~~~~~~~~~~~  323 (444)
T 3iib_A          244 GSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGLLGGKTYAKEHEAELEK  323 (444)
T ss_dssp             CSTEEEEEEEEEEECCCCSSSCCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTSHHHHHHHHHTGGGGGG
T ss_pred             CCCCCCCEEEEEeecccCCCCCCCccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCCcCHHHHHHhhHhhhhc
Confidence            9854789999999999999999999999999987                   999999999999999999999888889


Q ss_pred             eEEEEEecCCCCCccceeeecChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEeeeCCCCCCCCCc
Q psy9208         329 ITVAMESDDGTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALLNDNAKYFWYHH  408 (446)
Q Consensus       329 i~~~in~D~g~~~~~~~~~~gs~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~~~~~~y~~~yH  408 (446)
                      ++++||+||+++++..+...+++....+++.+.+.+.+.++.....+. ..+|||.+|.+.|||++.|++.+..|+++||
T Consensus       324 ~~~~~n~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~SD~~~f~~~GiP~~~l~~~~~~~~~~yH  402 (444)
T 3iib_A          324 HYIAAESDFGAGPIYQIDWRVADTAHSPVINAMKVAEPLGVAAGNNKA-SGGPDVSMLPALGVPVASLRQDGSDYFDYHH  402 (444)
T ss_dssp             EEEEEECCSTTCCEEEEEEECCHHHHHHHHHHGGGGGGGTCEECCSCC-CCCGGGTTSGGGTCCEEEEEECCTTGGGTTT
T ss_pred             eeEEEECcCCCCcceEEEeecChhhHHHHHHHHHHHhhcCCccccCCC-CCCCccHHHHHCCCCEEEeecCCCcCCCCCC
Confidence            999999999888877777778888888888888776666665422222 2579999999999999999997777889999


Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy9208         409 TRADTMSVLDSDTLDLCTALWGGVAYILADLSVELPRT  446 (446)
Q Consensus       409 t~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~~~~~~p~~  446 (446)
                      |++||+|++|++.|++++++++.+++.||+.++.||+.
T Consensus       403 t~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~~~~~~  440 (444)
T 3iib_A          403 TPNDTLDKINPEALAQNVAVYAQFAWVMANSKVELRPL  440 (444)
T ss_dssp             STTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCccccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999999999999999873

PyMOL of 3iib

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*	Back alignment and structure

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}	Back alignment and structure

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...	Back alignment and structure

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}	Back alignment and structure

>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}	Back alignment and structure

>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A	Back alignment and structure

>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A	Back alignment and structure

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A	Back alignment and structure

>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4	Back alignment and structure

>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}	Back alignment and structure

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}	Back alignment and structure

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*	Back alignment and structure

>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}	Back alignment and structure

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}	Back alignment and structure

>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}	Back alignment and structure

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}	Back alignment and structure

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}	Back alignment and structure

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}	Back alignment and structure

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}	Back alignment and structure

>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A	Back alignment and structure

>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}	Back alignment and structure

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A	Back alignment and structure

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A	Back alignment and structure

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*	Back alignment and structure

>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}	Back alignment and structure

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A	Back alignment and structure

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A	Back alignment and structure

>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}	Back alignment and structure

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*	Back alignment and structure

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}	Back alignment and structure

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}	Back alignment and structure

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...	Back alignment and structure

>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...	Back alignment and structure

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A	Back alignment and structure

>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}	Back alignment and structure

>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		446
d1de4c3		294	c.56.5.5 (C:122-189,C:383-608) Transferrin recepto	9e-26
d3bi1a3		304	c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep	8e-20
d1rtqa_		291	c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti	8e-18
d1tkja1		277	c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr	9e-16
d2afwa1		329	c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf	5e-08

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 9e-26
 Identities = 48/293 (16%), Positives = 81/293 (27%), Gaps = 43/293 (14%)

Query: 191 ATLIRSVTPYSLATPHTGHQSYDAAVKPIPTACIAPEYAEMLYRMYRRGDGPVVVSINID 250
             L R ++    +T  T           +P    + +   +   +  +     +  +  D
Sbjct: 4   DDLKRKLSEKLDSTDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRD 63

Query: 251 ARNVGTTNTRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAF----------- 299
              V      N    I+G   PD  V+     D+W    GA   G G             
Sbjct: 64  QHFVKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWG--PGAAKSGVGTALLLKLAQMFSD 121

Query: 300 ------------ISGILWTAEEQGYVGAIAYVKKHQEELKNITVAM-ESDDGTFTPFGLS 346
                       I    W+A + G VGA  +++ +   L          D          
Sbjct: 122 MVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFK 181

Query: 347 LKGSPEAACILNKVLRLFKPINATRLV---------QSKYPVGSDIELFQEK-NIPGVAL 396
           +  SP    ++ K ++  K     + +           K  + +    F     IP V+ 
Sbjct: 182 VSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSF 241

Query: 397 LNDNAKYFWYHHTRADTMSVLDSDTLDL------CTALWGGVAYILADLSVEL 443
                  + Y  T  DT   L     +L         + G     L    VEL
Sbjct: 242 CFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTH-DVEL 293

PyMOL of d1de4c3

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291	Back information, alignment and structure

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277	Back information, alignment and structure

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		446
d1tkja1		277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	100.0
d1rtqa_		291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	100.0
d1de4c3		294	Transferrin receptor ectodomain, protease-like dom	100.0
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	99.97
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	99.96
d1vhoa2		248	Putative endoglucanase TM1048, catalytic domain {T	99.51
d1yloa2		264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	99.48
d2fvga2		255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	99.32
d1vhea2		275	Hypothetical protein YsdC, catalytic domain {Bacil	99.16
d1cg2a1		276	Carboxypeptidase G2, catalytic domain {Pseudomonas	99.05
d1z2la1		293	Allantoate amidohydrolase AllC catalytic domain {E	99.0
d1de4c2		193	Transferrin receptor ectodomain, apical domain {Hu	98.87
d1fnoa4		295	Peptidase T (tripeptidase), catalytic domain {Salm	98.83
d3bi1a2		233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.78
g1q7l.1		280	Aminoacylase-1, catalytic domain {Human (Homo sapi	98.77
d2grea2		233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	98.75
d1r3na1		322	Peptidase-like beta-alanine synthase, catalytic do	98.32
d1lfwa1		272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	97.99
d1y0ya2		255	Frv operon protein FrvX, catalytic domain {Pyrococ	97.71
d1vgya1		262	Succinyl-diaminopimelate desuccinylase, catalytic	97.02
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	96.48
d1ysja1		261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	96.03
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	94.54
d1xmba1		273	IAA-amino acid hydrolase, catalytic domain {Mouse-	92.03
d1z2la1		293	Allantoate amidohydrolase AllC catalytic domain {E	89.12
d1y7ea2		322	Probable aminopeptidase ApeA {Borrelia burgdorferi	86.39

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=100.00  E-value=1.9e-37  Score=299.53  Aligned_cols=176  Identities=22%  Similarity=0.310  Sum_probs=147.5

Q ss_pred             eceEEEEEcCcCCCCcEEEEEecCCCCCCCCCcccCCCceeeE-------------------EEeeCccccccccHHHHH
Q psy9208         259 TRNTIVQIRGRECPDKVVITSGHLDSWDVGQGAMDDGGGAFIS-------------------GILWTAEEQGYVGAIAYV  319 (446)
Q Consensus       259 s~NVia~i~G~~~~~~~Vvl~aH~Ds~~~g~Ga~DngsG~a~l-------------------f~~~~aEE~Gl~GS~~y~  319 (446)
                      ++||||+++|+ +|++.|+|+||+||++.+|||+||+||++++                   |+||++||.|++||++|+
T Consensus        64 ~~Nvi~~~~g~-~~~~~i~~~aH~D~~~~~~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~~  142 (277)
T d1tkja1          64 GYNLIANWPGG-DPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFYV  142 (277)
T ss_dssp             EEEEEEECSCS-EEEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHH
T ss_pred             ccCeEEEECCC-CCCCEEEEEccccccccccccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccccccHHHH
Confidence            35999999997 6889999999999999999999999999987                   999999999999999999


Q ss_pred             HHhH-hhhcceEEEEEecC-CCCCccceeeecChhHHHHHHHHHHHhCCCCCccccCCCCCCCCchHhHHhCCCeEEEee
Q psy9208         320 KKHQ-EELKNITVAMESDD-GTFTPFGLSLKGSPEAACILNKVLRLFKPINATRLVQSKYPVGSDIELFQEKNIPGVALL  397 (446)
Q Consensus       320 ~~~~-~~~~~i~~~in~D~-g~~~~~~~~~~gs~~l~~l~~~~~~~~~~~~~~~~~~~~~~~gSD~~~F~~~GIP~~~l~  397 (446)
                      ++|+ .++++++++||+|| |..++..+...+.+.+...+.++.+.+. .... ..... +.+|||.||.+.|||++.+.
T Consensus       143 ~~~~~~~~~~i~~~inlD~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~SDh~~F~~~GIP~~~l~  219 (277)
T d1tkja1         143 NNLPSADRSKLAGYLNFDMIGSPNPGYFVYDDDPVIEKTFKNYFAGLN-VPTE-IETEG-DGRSDHAPFKNVGVPVGGLF  219 (277)
T ss_dssp             HHSCHHHHTTEEEEEEECCCCCSSCCCEECCSSHHHHHHHHHHHHHHT-CCCE-ECCSS-TTCSTHHHHHHTTCCEEEEE
T ss_pred             HHhhccchhheeeeeccccccCCCCceEEecCChHHHHHHHHHHHhcC-CCcc-cccCC-CCCccchhHHHCCCCEEEee
Confidence            9986 45789999999999 5455544556788888888888876542 1121 11122 25699999999999999987


Q ss_pred             eCC-----------------CCCCCCCcCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy9208         398 NDN-----------------AKYFWYHHTRADTMSVLDSDTLDLCTALWGGVAYILAD  438 (446)
Q Consensus       398 ~~~-----------------~~y~~~yHt~~Dt~d~ld~~~l~~~~~~~a~~~~~lA~  438 (446)
                      ++.                 ..|+++|||++||+|++|++.|++++++++.+++.|||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~YHt~~Dt~d~l~~~~l~~~~~~v~~~v~~LAn  277 (277)
T d1tkja1         220 TGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSS  277 (277)
T ss_dssp             CCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCccccchhhhhhccccccccCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHhC
Confidence            632                 23568899999999999999999999999999999996

PyMOL of d1tkja1

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}	Back information, alignment and structure

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}	Back information, alignment and structure

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}	Back information, alignment and structure

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}	Back information, alignment and structure

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}	Back information, alignment and structure