Psyllid ID: psy9211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSHNLTS
Secondary Structure (PSIPRED)
cHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEEccHHHHHHHHHccccHHHHHHcccccccccEEEEEEEEccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEccHHHHHHHHcccccHHHHHHccccHHHHHEEccEEEEcHHHHHHHHHHccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmrrlrrvnvdhyhvgwyqssdvanfislpliesqfHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQmykegeftPEALRAIKVGFENLLlevpvkirnspltnvllsevdglvspaegnnfldLGTAFQQQVVRQAQDKHRYQAKRMQENQaraakdepplpeedlnkifrpipvpprlspmLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSHNLTS
Flexible Loop (DISEMBL)
mmrrlrrvnvdhyhvgwYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQEnqaraakdepplpeedlNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSHNLTS
Low Complexity Region (SEG)
MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSHNLTS
Disordered region (IsUnstruct)
******RVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQV**************************************************LMAAQVSAYADHIS*********LY************
Disordered Region (DISOPRED)
***R*RRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYK***********IKVGFENLLLEVPVKIRNSPLTNVLLSEVDG*********FLDLGTAFQQQ*************************************IFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKS*****
Disordered Region (DISEMBL)
MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQ****************************PLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSHNLTS
Disordered Region (DISPRO)
MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSH****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLYMMEAVKSHNLTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9GV27	337	Eukaryotic translation in	N/A	N/A	0.977	0.655	0.627	1e-91
B0WDA9	336	Eukaryotic translation in	N/A	N/A	0.977	0.657	0.603	1e-85
Q170C2	336	Eukaryotic translation in	N/A	N/A	0.977	0.657	0.595	2e-85
Q7PVR3	334	Eukaryotic translation in	yes	N/A	0.977	0.661	0.595	1e-84
B4KGS4	337	Eukaryotic translation in	N/A	N/A	0.977	0.655	0.550	5e-78
B3MP94	337	Eukaryotic translation in	N/A	N/A	0.977	0.655	0.550	5e-78
B4LTW0	337	Eukaryotic translation in	N/A	N/A	0.977	0.655	0.550	5e-78
B4N116	337	Eukaryotic translation in	N/A	N/A	0.977	0.655	0.546	5e-77
Q9U9Q4	338	Eukaryotic translation in	yes	N/A	0.973	0.650	0.544	5e-77
B4JAS7	337	Eukaryotic translation in	N/A	N/A	0.977	0.655	0.546	6e-77

>sp|Q9GV27|EIF3H_BOMMO Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1

 Score =  335 bits (860), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 155/247 (62%), Positives = 194/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+SL L+ESQ+HYQ SIEE+VV+IYDT+K++RGFL
Sbjct: 83  MMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYKEG++TPEALR +K+G+ENL +EVP+ IRNSPLTN+++SE+  ++
Sbjct: 143 TLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMI 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          +QQ VVRQ QDKHR+  KR 
Sbjct: 203 PEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDE PLPEED+NK+F+P PVPPRL+PM++A Q+  Y+ HISQF SQSLAKLY
Sbjct: 263 QENAARAAKDETPLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLY 322

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 323 LTQALQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Bombyx mori (taxid: 7091)

>sp|B0WDA9|EIF3H_CULQU Eukaryotic translation initiation factor 3 subunit H OS=Culex quinquefasciatus GN=CPIJ005299 PE=3 SV=1

 Score =  315 bits (808), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/247 (60%), Positives = 185/247 (74%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLR VNVDH+HVGWYQS+DV NF+SLPL+ESQ+HYQ SIEE+VV+IYDTQK+ RGFL
Sbjct: 84  MMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSKRGFL 143

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYKEGEFTPEALR +KVG+ENL LEVP+ I+NS L N+++SE+  +V
Sbjct: 144 TLKAYRLTPQAIAMYKEGEFTPEALRNLKVGYENLFLEVPIVIKNSALCNIMMSELAEMV 203

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG +FLDLGTA                          +QQ V+RQ QDKHR  AK  
Sbjct: 204 PEEEGTHFLDLGTASVLENHLRSMMDRVDELNQEANKFNKYQQTVIRQEQDKHRMLAKHA 263

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN AR AK E  +P++++ K+FRP  VPPRL+P++++ Q++ YA HISQF SQSLAKLY
Sbjct: 264 QENAARIAKGETAIPDDEITKLFRPPTVPPRLNPLIVSGQINTYAKHISQFCSQSLAKLY 323

Query: 215 MMEAVKS 221
           M +A++ 
Sbjct: 324 MTQALQG 330

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|Q170C2|EIF3H_AEDAE Eukaryotic translation initiation factor 3 subunit H OS=Aedes aegypti GN=AAEL007945 PE=2 SV=1

 Score =  315 bits (807), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 186/247 (75%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLR VNVDH+HVGWYQS+DV NF+SLPL+ESQ+HYQ SIEE+VV+IYDTQK++RGFL
Sbjct: 84  MMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSARGFL 143

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYKE +FTPEALR +KVG+ENL +E+P+ I+NS L N+++SE+  +V
Sbjct: 144 TLKAYRLTPQAIAMYKEEKFTPEALRNLKVGYENLFIEIPIVIKNSALCNIMMSEMKEMV 203

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG +FLDLGTA                          +QQ V+RQ QDKHR  AK  
Sbjct: 204 PEEEGTHFLDLGTASVLENHLRCLMDRVDELNQEANKFNKYQQTVIRQEQDKHRMLAKHA 263

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN AR AK E  +P+E++ K+FRP+PVP RL+PM+++ Q++ YA HISQF SQSLAKLY
Sbjct: 264 QENAARIAKGEAAIPDEEVQKLFRPLPVPSRLNPMIVSGQINTYAQHISQFCSQSLAKLY 323

Query: 215 MMEAVKS 221
           M +A++ 
Sbjct: 324 MTQALQG 330

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|Q7PVR3|EIF3H_ANOGA Eukaryotic translation initiation factor 3 subunit H OS=Anopheles gambiae GN=AGAP009204 PE=3 SV=3

 Score =  312 bits (800), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 185/247 (74%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLR VNVDH+HVGWYQS+DV NF+S  L+ESQ+HYQ SIEE+VV+IYDTQK++RGFL
Sbjct: 82  MMRRLRHVNVDHFHVGWYQSADVGNFLSSTLLESQYHYQTSIEESVVVIYDTQKSARGFL 141

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYKE +FTPEALR +KVG+ENL +E+P+ I+NS L N+++SE+  LV
Sbjct: 142 TLKAYRLTPQAIAMYKERDFTPEALRNLKVGYENLFIEIPIVIKNSALCNIMMSELTELV 201

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG +FLDLGTA                          +QQ  +RQ Q+KHR  AK  
Sbjct: 202 PEEEGTHFLDLGTASVLENHLRCMMDRVDELNHEATKFNKYQQAAIRQEQEKHRMLAKHA 261

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN AR AK E  +PEE++NK+FRPIPVP RL+PM+++ Q++ YA HISQF SQSLAKLY
Sbjct: 262 QENAARIAKGEQAVPEEEVNKLFRPIPVPTRLNPMIVSGQINTYAQHISQFCSQSLAKLY 321

Query: 215 MMEAVKS 221
           M +A+++
Sbjct: 322 MTQALQN 328

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Anopheles gambiae (taxid: 7165)

>sp|B4KGS4|EIF3H_DROMO Eukaryotic translation initiation factor 3 subunit H OS=Drosophila mojavensis GN=eIF-3p40 PE=3 SV=1

 Score =  290 bits (742), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 181/247 (73%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           +MRRLRRVNVDH HVGWYQSSDV N +SL L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct: 83  VMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
            LKAYRLTPQAIQMYK+G+FTPEA R +KVG+E+L  E+P+ I+NSPLTN+++SE++ L+
Sbjct: 143 CLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELL 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G+NFLDLGTA                          +QQ V +Q  +KHR  AK  
Sbjct: 203 PEDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN  R +K EP +PEE++ K FRP+PVP RL+  + + Q++ +A HI+QF SQSLAKL+
Sbjct: 263 AENAVRTSKGEPTVPEEEVIKQFRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLF 322

Query: 215 MMEAVKS 221
           + E++++
Sbjct: 323 ITESLQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila mojavensis (taxid: 7230)

>sp|B3MP94|EIF3H_DROAN Eukaryotic translation initiation factor 3 subunit H OS=Drosophila ananassae GN=eIF-3p40 PE=3 SV=1

 Score =  290 bits (742), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 181/247 (73%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           +MRRLRRVNVDH HVGWYQSSDV N +SL L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct: 83  VMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
            LKAYRLTPQAIQMYK+G+FTPEA R +KVG+E+L  E+P+ I+NSPLTN+++SE++ L+
Sbjct: 143 CLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELL 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G+NFLDLGTA                          +QQ V +Q  +KHR  AK  
Sbjct: 203 PEDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN  R +K EP +PEE++ K FRP+PVP RL+  + + Q++ +A HI+QF SQSLAKL+
Sbjct: 263 AENAVRTSKGEPTVPEEEVIKQFRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLF 322

Query: 215 MMEAVKS 221
           + E++++
Sbjct: 323 ITESLQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila ananassae (taxid: 7217)

>sp|B4LTW0|EIF3H_DROVI Eukaryotic translation initiation factor 3 subunit H OS=Drosophila virilis GN=eIF-3p40 PE=3 SV=1

 Score =  290 bits (742), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 181/247 (73%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           +MRRLRRVNVDH HVGWYQSSDV N +SL L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct: 83  VMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
            LKAYRLTPQAIQMYK+G+FTPEA R +KVG+E+L  E+P+ I+NSPLTN+++SE++ L+
Sbjct: 143 CLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELL 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G+NFLDLGTA                          +QQ V +Q  +KHR  AK  
Sbjct: 203 PEDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN  R +K EP +PEE++ K FRP+PVP RL+  + + Q++ +A HI+QF SQSLAKL+
Sbjct: 263 AENAVRTSKGEPTVPEEEVIKQFRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLF 322

Query: 215 MMEAVKS 221
           + E++++
Sbjct: 323 ITESLQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila virilis (taxid: 7244)

>sp|B4N116|EIF3H_DROWI Eukaryotic translation initiation factor 3 subunit H OS=Drosophila willistoni GN=eIF-3p40 PE=3 SV=1

 Score =  287 bits (734), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 135/247 (54%), Positives = 180/247 (72%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           +MRRLRRVNVDH HVGWYQSSDV N +SL L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct: 83  VMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
            LKAYRLTPQAIQMYK+G+FTPEA R +KVG+E+L  E+P+ I+NSPLTN+++SE++ L+
Sbjct: 143 CLKAYRLTPQAIQMYKDGDFTPEAFRNLKVGYESLFAEIPIVIKNSPLTNIMMSELNELL 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G+NFLDLGTA                          +QQ V +Q  +KHR  AK  
Sbjct: 203 PEDKGHNFLDLGTASVLENHMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN  R +K EP + EE++ K FRP+PVP RL+  + + Q++ +A HI+QF SQSLAKL+
Sbjct: 263 AENAVRTSKGEPTVSEEEVIKQFRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLF 322

Query: 215 MMEAVKS 221
           + E++++
Sbjct: 323 ITESLQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila willistoni (taxid: 7260)

>sp|Q9U9Q4|EIF3H_DROME Eukaryotic translation initiation factor 3 subunit H OS=Drosophila melanogaster GN=eIF-3p40 PE=2 SV=2

 Score =  287 bits (734), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 178/246 (72%), Gaps = 26/246 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           +MRRLRRVNVDH HVGWYQSSDV N +S+ L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct: 84  VMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFL 143

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
            LKAYRLTPQAIQMYK+G+FTPEA R +KVG+ENL  E+P+ I+NSPLTN+++SE++ L+
Sbjct: 144 CLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELNELL 203

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G+NFLDLGTA                          +QQ V +Q  +KHR  AK  
Sbjct: 204 PEDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFKQDTEKHRALAKLA 263

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN  R +K EP +PEE++ K FRP+  P RL+  + + Q++ +A HI+QF SQSLAKL+
Sbjct: 264 AENAVRTSKGEPTVPEEEVIKQFRPMTAPNRLTATITSGQINTHAQHIAQFCSQSLAKLF 323

Query: 215 MMEAVK 220
           + E+++
Sbjct: 324 ITESLQ 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

>sp|B4JAS7|EIF3H_DROGR Eukaryotic translation initiation factor 3 subunit H OS=Drosophila grimshawi GN=eIF-3p40 PE=3 SV=1

 Score =  286 bits (733), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 135/247 (54%), Positives = 179/247 (72%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           +MR LRRVNVDH HVGWYQSSDV N +SL L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct: 83  VMRHLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
            LKAYRLTPQAIQMYK+ +FTPEA R +KVG+E+L  E+P+ I+NSPLTN+++SE++ L+
Sbjct: 143 CLKAYRLTPQAIQMYKDSDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELL 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G+NFLDLGTA                          +QQ V +Q  +KHR  AK  
Sbjct: 203 PEDKGHNFLDLGTASVLENHMRSLIERVDELYQESVRYNKYQQVVFKQDTEKHRALAKLA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN  R +K EP +PEE++ K FRP+PVP RL+  + + Q++ +A HI+QF SQSLAKL+
Sbjct: 263 AENAVRTSKGEPTVPEEEVIKQFRPMPVPARLTATITSGQINTHAQHIAQFCSQSLAKLF 322

Query: 215 MMEAVKS 221
           + EA+++
Sbjct: 323 ITEALQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
91083005	338	PREDICTED: similar to EN10 [Tribolium ca	0.977	0.653	0.651	4e-90
112983906	337	eukaryotic translation initiation factor	0.977	0.655	0.627	6e-90
332373114	338	unknown [Dendroctonus ponderosae]	0.977	0.653	0.643	9e-90
389608291	309	eukaryotic initiation factor 3 p40 subun	0.977	0.715	0.615	3e-88
389615175	340	eukaryotic initiation factor 3 p40 subun	0.977	0.65	0.611	2e-87
357613911	337	eukaryotic translation initiation factor	0.977	0.655	0.607	7e-87
307180407	336	Eukaryotic translation initiation factor	0.977	0.657	0.607	8e-87
332023817	336	Eukaryotic translation initiation factor	0.977	0.657	0.603	2e-86
322785342	336	hypothetical protein SINV_05727 [Solenop	0.977	0.657	0.603	2e-86
242021197	344	eukaryotic translation initiation factor	0.977	0.642	0.639	3e-85

>gi|91083005|ref|XP_974497.1| PREDICTED: similar to EN10 [Tribolium castaneum] gi|270007645|gb|EFA04093.1| hypothetical protein TcasGA2_TC014327 [Tribolium castaneum]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 161/247 (65%), Positives = 192/247 (77%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+SLPL+ESQFHYQ SIEE+VV+IYDTQK+SRGFL
Sbjct: 84  MMRRLRRVNVDHFHVGWYQSADVGNFLSLPLLESQFHYQTSIEESVVVIYDTQKSSRGFL 143

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI+MYKEGEFTPEAL  +KVG+ENL +EVP  I+NS LTN+++SE+  LV
Sbjct: 144 TLKAYRLTPQAIEMYKEGEFTPEALLKLKVGYENLFIEVPFVIKNSALTNIMMSELQELV 203

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          +QQ V RQ QDKHRY  KR 
Sbjct: 204 PEEEGSKFLDLGTASVLEGQLRCLMDRVDELNQEAIKFNRYQQLVSRQQQDKHRYLQKRA 263

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDEPPLPEED+NK+FRP PVPPRL+PM++A Q++ Y+  ISQ  SQSLAKLY
Sbjct: 264 QENAARAAKDEPPLPEEDINKLFRPHPVPPRLNPMIIAGQINTYSQAISQLCSQSLAKLY 323

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 324 ITQALQN 330

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983906|ref|NP_001036848.1| eukaryotic translation initiation factor 3 subunit H [Bombyx mori] gi|74848914|sp|Q9GV27.1|EIF3H_BOMMO RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h gi|10801566|dbj|BAB16696.1| EN10 [Bombyx mori]

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 155/247 (62%), Positives = 194/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+SL L+ESQ+HYQ SIEE+VV+IYDT+K++RGFL
Sbjct: 83  MMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYKEG++TPEALR +K+G+ENL +EVP+ IRNSPLTN+++SE+  ++
Sbjct: 143 TLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMI 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          +QQ VVRQ QDKHR+  KR 
Sbjct: 203 PEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDE PLPEED+NK+F+P PVPPRL+PM++A Q+  Y+ HISQF SQSLAKLY
Sbjct: 263 QENAARAAKDETPLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLY 322

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 323 LTQALQN 329

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373114|gb|AEE61698.1| unknown [Dendroctonus ponderosae]

 Score =  335 bits (859), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 159/247 (64%), Positives = 192/247 (77%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+SLPL+ESQ+HYQ SIEE+VV+IYDTQK++RGFL
Sbjct: 84  MMRRLRRVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSARGFL 143

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI+MYKEGE+TPEAL  +KVGFENL  EVP  I+NSPLTN+++SE++ LV
Sbjct: 144 TLKAYRLTPQAIEMYKEGEYTPEALLKLKVGFENLFTEVPFLIKNSPLTNIMMSELNELV 203

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          FQQ V RQ QDKHRY  KR 
Sbjct: 204 PKDEGSKFLDLGTATVLENQLRSLMDRVDELNQEAIKFNRFQQLVSRQQQDKHRYLQKRA 263

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN AR AKDE PLPEEDLNK+F+P PVPPRL+PM++A Q++ Y+  +SQF SQSLAKLY
Sbjct: 264 QENAARVAKDEAPLPEEDLNKLFKPHPVPPRLNPMIIAGQINTYSQAVSQFCSQSLAKLY 323

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 324 ITQALQN 330

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608291|dbj|BAM17757.1| eukaryotic initiation factor 3 p40 subunit [Papilio xuthus]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 152/247 (61%), Positives = 195/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+S  L+ESQ+HYQ SIEE+VV+IYDT+K++RGFL
Sbjct: 55  MMRRLRRVNVDHFHVGWYQSADVGNFLSQSLLESQYHYQTSIEESVVVIYDTKKSARGFL 114

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYK+G++TP+ALR +K+G+E+L +EVP+ IRNSPLTN+++SE+  ++
Sbjct: 115 TLKAYRLTPQAIAMYKDGDYTPDALRNLKIGYESLFIEVPIVIRNSPLTNIMMSELSEMI 174

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          +QQ VVRQ QDKHR+  KR 
Sbjct: 175 PEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWLLKRA 234

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDEPPLPEED+NK+F+P PVPPRL+PM++A Q++ Y+ HISQF SQSLAKLY
Sbjct: 235 QENSARAAKDEPPLPEEDVNKLFKPHPVPPRLNPMIVAGQINTYSQHISQFCSQSLAKLY 294

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 295 LTQALQN 301

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389615175|dbj|BAM20575.1| eukaryotic initiation factor 3 p40 subunit, partial [Papilio polytes]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/247 (61%), Positives = 194/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+S  L+ESQ+HYQ SIEE+VV+IYDT+K++RGFL
Sbjct: 83  MMRRLRRVNVDHFHVGWYQSADVGNFLSQSLLESQYHYQTSIEESVVVIYDTKKSARGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYK+G++TP+ALR +K+G+E+L +EVP+ IRNSPLTN+++SE+  ++
Sbjct: 143 TLKAYRLTPQAIAMYKDGDYTPDALRNLKIGYESLFVEVPIVIRNSPLTNIMMSELSEMI 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          +QQ VVRQ QDKHR+  KR 
Sbjct: 203 PEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWLLKRA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDEPPLPEED+NK+F+P PVP RL+PM++A Q++ Y+ HISQF SQSLAKLY
Sbjct: 263 QENSARAAKDEPPLPEEDVNKLFKPHPVPSRLNPMIVAGQINTYSQHISQFCSQSLAKLY 322

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 323 LTQALQN 329

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613911|gb|EHJ68783.1| eukaryotic translation initiation factor 3 subunit H [Danaus plexippus]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 192/247 (77%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQS+DV NF+S  L+ESQ+HYQ SIEE+VV+IYDT+K++RGFL
Sbjct: 83  MMRRLRRVNVDHFHVGWYQSADVGNFLSESLLESQYHYQTSIEESVVVIYDTKKSARGFL 142

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYKE ++TPEALR +K+G+ENL +EVP+ IRNSPLTN+++SE+  ++
Sbjct: 143 TLKAYRLTPQAIAMYKEKDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMMSEISEMI 202

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EG+ FLDLGTA                          +Q  VVRQ Q+KHR+  KR 
Sbjct: 203 PEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQLSVVRQQQEKHRWLLKRA 262

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDE PLPEED+NK+F+P+PVPPR+ PM++A Q++ Y+ HISQF SQSLAKLY
Sbjct: 263 QENAARAAKDEAPLPEEDVNKLFKPLPVPPRMVPMIVAGQINTYSQHISQFCSQSLAKLY 322

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 323 LTQALQN 329

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180407|gb|EFN68433.1| Eukaryotic translation initiation factor 3 subunit H [Camponotus floridanus]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 194/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLR VNVDH+HVGWYQS+DV NF++L L+ESQ+HYQ SIEE+VVLIYDT K++RGFL
Sbjct: 82  MMRRLRWVNVDHFHVGWYQSADVGNFLNLSLLESQYHYQTSIEESVVLIYDTAKSARGFL 141

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAIQMYKE EFTPEALR +K+G+E+L +E+PV I+NS LTN+++SE+D ++
Sbjct: 142 TLKAYRLTPQAIQMYKENEFTPEALRTLKIGYESLFVEIPVVIKNSNLTNIMMSELDEMI 201

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G  +LDLGTA                          +QQ VVRQ QDK+R  AKR 
Sbjct: 202 PEEQGTKYLDLGTATVLENQLRCLMDRVDELNQEAMKFNRYQQLVVRQQQDKNRLLAKRA 261

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDEPPLP++D+NK+ RP+PVPPRL+PM++A Q++ Y++HISQF SQSLAKLY
Sbjct: 262 QENAARAAKDEPPLPDDDINKLMRPLPVPPRLNPMIVAGQINTYSEHISQFCSQSLAKLY 321

Query: 215 MMEAVKS 221
           + +++++
Sbjct: 322 ITQSLQN 328

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023817|gb|EGI64041.1| Eukaryotic translation initiation factor 3 subunit H [Acromyrmex echinatior]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 149/247 (60%), Positives = 194/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLR VNVDH+HVGWYQS+DV NF++L L+ESQ+HYQ SIEE+VVLIYDT K++RGFL
Sbjct: 82  MMRRLRWVNVDHFHVGWYQSADVGNFLNLSLLESQYHYQTSIEESVVLIYDTAKSARGFL 141

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAIQMYKE EFTPEALR +K+G+E+L +E+PV I+NS LTN+++SE+D ++
Sbjct: 142 TLKAYRLTPQAIQMYKENEFTPEALRTLKIGYESLFVEIPVVIKNSNLTNIMMSELDEMI 201

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G  +LDLGTA                          +QQ VVRQ QDK+R  AKR 
Sbjct: 202 PEEQGTKYLDLGTATVLENQLRCLMDRVDELNQEAMKFNRYQQLVVRQQQDKNRLLAKRA 261

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDEPPLP++D+NK+ RP+PVPPRL+PM++A Q++ Y++HISQF +QSLAKLY
Sbjct: 262 QENAARAAKDEPPLPDDDINKLMRPLPVPPRLNPMIVAGQINTYSEHISQFCAQSLAKLY 321

Query: 215 MMEAVKS 221
           + +++++
Sbjct: 322 ITQSLQN 328

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785342|gb|EFZ12016.1| hypothetical protein SINV_05727 [Solenopsis invicta]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 149/247 (60%), Positives = 194/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLR VNVDH+HVGWYQS+DV NF++L L+ESQ+HYQ SIEE+VVLIYDT K++RGFL
Sbjct: 82  MMRRLRWVNVDHFHVGWYQSADVGNFLNLSLLESQYHYQTSIEESVVLIYDTAKSARGFL 141

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAIQMYKE EFTPEALR +K+G+E+L +E+PV I+NS LTN+++SE+D ++
Sbjct: 142 TLKAYRLTPQAIQMYKENEFTPEALRTLKIGYESLFVEIPVVIKNSNLTNIMMSELDEMI 201

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              +G  +LDLGTA                          +QQ VVRQ QDK+R  AKR 
Sbjct: 202 PEEQGTKYLDLGTATVLENQLRCLMDRVDELNQEAMKFNRYQQLVVRQQQDKNRLLAKRA 261

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
           QEN ARAAKDEPPLP++D+NK+ RP+PVPPRL+PM++A Q++ Y++HISQF +QSLAKLY
Sbjct: 262 QENAARAAKDEPPLPDDDINKLMRPLPVPPRLNPMIVAGQINTYSEHISQFCAQSLAKLY 321

Query: 215 MMEAVKS 221
           + +++++
Sbjct: 322 ITQSLQN 328

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021197|ref|XP_002431032.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] gi|212516261|gb|EEB18294.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/247 (63%), Positives = 193/247 (78%), Gaps = 26/247 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMRRLRRVNVDH+HVGWYQSSDV NF+SLPL+ESQ+HYQISIEE+VV+IYDTQK++ GFL
Sbjct: 77  MMRRLRRVNVDHFHVGWYQSSDVGNFLSLPLLESQYHYQISIEESVVVIYDTQKSANGFL 136

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           TLKAYRLTPQAI MYK+ EFTPEALR +K+GFENL  E+P+++RNSPLTN++LSE+  +V
Sbjct: 137 TLKAYRLTPQAINMYKDNEFTPEALRNLKIGFENLFTEIPIEVRNSPLTNIMLSELTEMV 196

Query: 121 SPAEGNNFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKRM 154
              EGNNFLDLGTA                          FQQQV+RQ QDKHR   KR 
Sbjct: 197 PEEEGNNFLDLGTASVLEGQLRAMMYRVDELNQEAIKFNRFQQQVIRQQQDKHRLLQKRA 256

Query: 155 QENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLAKLY 214
            EN AR AKDEP LPE+D+NK+FRPIP PPRL+PM+++ QV+AY   I+QF +QSLAKLY
Sbjct: 257 VENSARQAKDEPLLPEDDINKMFRPIPTPPRLNPMIVSGQVNAYGQAITQFCAQSLAKLY 316

Query: 215 MMEAVKS 221
           + +A+++
Sbjct: 317 VTQALQN 323

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
FB|FBgn0022023	338	eIF-3p40 "Eukaryotic initiatio	0.592	0.396	0.708	6e-70
UNIPROTKB|B5FY35	348	EIF3H "Eukaryotic translation	0.592	0.385	0.5	2e-55
UNIPROTKB|B5RI54	344	eif3h "Eukaryotic translation	0.592	0.389	0.5	7.8e-54
UNIPROTKB|B3KS98	366	EIF3S3 "Eukaryotic translation	0.592	0.366	0.5	7.8e-54
UNIPROTKB|O15372	352	EIF3H "Eukaryotic translation	0.592	0.380	0.5	7.8e-54
UNIPROTKB|Q56JZ5	352	EIF3H "Eukaryotic translation	0.592	0.380	0.5	9.9e-54
UNIPROTKB|F1S1J9	327	EIF3H "Uncharacterized protein	0.592	0.409	0.5	1.6e-53
UNIPROTKB|Q5PPY6	334	eif3h "Eukaryotic translation	0.592	0.401	0.507	1.6e-53
ZFIN|ZDB-GENE-051030-42	333	eif3hb "eukaryotic translation	0.592	0.402	0.507	3.3e-53
UNIPROTKB|Q6P381	335	eif3h "Eukaryotic translation	0.592	0.4	0.5	4.8e-52

FB|FBgn0022023 eIF-3p40 "Eukaryotic initiation factor 3 p40 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 525 (189.9 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
 Identities = 95/134 (70%), Positives = 119/134 (88%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             +MRRLRRVNVDH HVGWYQSSDV N +S+ L+ESQ+HYQ SIEE+VV++YDTQK+SRGFL
Sbjct:    84 VMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFL 143

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
              LKAYRLTPQAIQMYK+G+FTPEA R +KVG+ENL  E+P+ I+NSPLTN+++SE++ L+
Sbjct:   144 CLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELNELL 203

Query:   121 SPAEGNNFLDLGTA 134
                +G+NFLDLGTA
Sbjct:   204 PEDKGHNFLDLGTA 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|B5FY35 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Taeniopygia guttata (taxid:59729)]

 Score = 350 (128.3 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 67/134 (50%), Positives = 99/134 (73%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F++  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:    99 MMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 158

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+PEAL+   + +EN+  EVP+ I+NS L NV+L E++   
Sbjct:   159 SLKAYRLTPKLMEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKS 218

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L L ++
Sbjct:   219 AVADRHELLSLASS 232

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|B5RI54 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Salmo salar (taxid:8030)]

 Score = 347 (127.2 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 67/134 (50%), Positives = 99/134 (73%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F+S  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:    95 MMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 154

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+ E L+   +GFE++  EVP+ I+NS L NVL+ E++   
Sbjct:   155 SLKAYRLTPKLMEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKC 214

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L+L ++
Sbjct:   215 TVADKHELLNLSSS 228

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|B3KS98 EIF3S3 "Eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 67/134 (50%), Positives = 98/134 (73%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F++  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:   117 MMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 176

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+PEAL+   + FE +  EVP+ I+NS L NVL+ E++   
Sbjct:   177 SLKAYRLTPKLMEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKS 236

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L L ++
Sbjct:   237 AVADKHELLSLASS 250

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O15372 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 67/134 (50%), Positives = 98/134 (73%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F++  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:   103 MMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 162

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+PEAL+   + FE +  EVP+ I+NS L NVL+ E++   
Sbjct:   163 SLKAYRLTPKLMEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKS 222

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L L ++
Sbjct:   223 AVADKHELLSLASS 236

GO:0005515 "protein binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q56JZ5 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 67/134 (50%), Positives = 99/134 (73%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F++  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:   103 MMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 162

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+PEAL+   + FE++  EVP+ I+NS L NVL+ E++   
Sbjct:   163 SLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKS 222

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L L ++
Sbjct:   223 AVADKHELLSLASS 236

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|F1S1J9 EIF3H "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 67/134 (50%), Positives = 99/134 (73%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F++  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:    78 MMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 137

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+PEAL+   + FE++  EVP+ I+NS L NVL+ E++   
Sbjct:   138 SLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKS 197

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L L ++
Sbjct:   198 AVADKHELLSLASS 211

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5PPY6 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus laevis (taxid:8355)]

 Score = 343 (125.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 68/134 (50%), Positives = 95/134 (70%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+    F+S  L++SQF YQ +IEE+VVLIYD  KTS+G L
Sbjct:    85 MMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTSQGSL 144

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+ E L+   V +E++  EVP+ I+NS L NVL+ E+D   
Sbjct:   145 SLKAYRLTPKLMEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKA 204

Query:   121 SPAEGNNFLDLGTA 134
                E +  L+L ++
Sbjct:   205 PVTEKHELLNLSSS 218

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-051030-42 eif3hb "eukaryotic translation initiation factor 3, subunit H, b" [Danio rerio (taxid:7955)]

 Score = 344 (126.2 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 68/134 (50%), Positives = 97/134 (72%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+   +F+S  L++SQF YQ +IEE+VVLIYD  KT++G L
Sbjct:    84 MMRSLRHVNIDHLHVGWYQSTLYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSL 143

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
              LKAYRLTP+ +++ KE +F+ E L+   VG+E++  EVP+ I+NS L NVLL E++   
Sbjct:   144 CLKAYRLTPKLMEICKEKDFSSEGLKKASVGYEHMFEEVPIVIKNSHLINVLLWELEEKS 203

Query:   121 SPAEGNNFLDLGTA 134
             + A+ +  L L ++
Sbjct:   204 TAADKHELLSLSSS 217

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

UNIPROTKB|Q6P381 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 338 (124.0 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 67/134 (50%), Positives = 93/134 (69%)

Query:     1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             MMR LR VN+DH HVGWYQS+    F+S  L++SQF YQ +IEE+VVLIYD  KT +G L
Sbjct:    86 MMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTGQGSL 145

Query:    61 TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
             +LKAYRLTP+ +++ KE +F+ E L+   + FE++  EVP+ I+NS L NVL  E+D   
Sbjct:   146 SLKAYRLTPKLMEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKA 205

Query:   121 SPAEGNNFLDLGTA 134
                E +  L+L ++
Sbjct:   206 PVTEKHELLNLSSS 219

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P381	EIF3H_XENTR	No assigned EC number	0.4291	0.9690	0.6537	yes	N/A
Q7PVR3	EIF3H_ANOGA	No assigned EC number	0.5951	0.9778	0.6616	yes	N/A
Q5BDW0	EIF3H_EMENI	No assigned EC number	0.3043	0.9867	0.6092	yes	N/A
B5FY35	EIF3H_TAEGU	No assigned EC number	0.4176	0.9867	0.6408	yes	N/A
Q5ZLE6	EIF3H_CHICK	No assigned EC number	0.4096	0.9867	0.6408	yes	N/A
Q54UD0	EIF3H_DICDI	No assigned EC number	0.3083	0.9601	0.6802	yes	N/A
Q9U9Q4	EIF3H_DROME	No assigned EC number	0.5447	0.9734	0.6508	yes	N/A
O15372	EIF3H_HUMAN	No assigned EC number	0.4136	0.9867	0.6335	yes	N/A
Q56JZ5	EIF3H_BOVIN	No assigned EC number	0.4136	0.9867	0.6335	yes	N/A
Q6P9U8	EIF3H_RAT	No assigned EC number	0.4096	0.9867	0.6335	yes	N/A
Q6AXJ2	EI3HA_DANRE	No assigned EC number	0.4176	0.9867	0.6656	yes	N/A
B5DJJ2	EIF3H_DROPS	No assigned EC number	0.5384	0.9778	0.6557	yes	N/A
Q91WK2	EIF3H_MOUSE	No assigned EC number	0.4136	0.9867	0.6335	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
cd08065	266	cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN)	7e-70
smart00232	135	smart00232, JAB_MPN, JAB/MPN domain	1e-07

>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

 Score =  214 bits (547), Expect = 7e-70
 Identities = 86/199 (43%), Positives = 121/199 (60%), Gaps = 27/199 (13%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           MMR LR VNVDH HVGWYQS+ + +F +  LIE+Q++YQ +IEE+VVL+YD  KTS+G L
Sbjct: 68  MMRLLREVNVDHNHVGWYQSTYLGSFFTRDLIETQYNYQEAIEESVVLVYDPSKTSQGSL 127

Query: 61  TLKAYRLTPQAIQMYKEGEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV 120
           +LKAYRL+ + +++YKEG+F+ E+LR   + F N+  E+PV IRNS L N LLSE++   
Sbjct: 128 SLKAYRLSEKFMELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDS 187

Query: 121 SPAEGN-NFLDLGTA--------------------------FQQQVVRQAQDKHRYQAKR 153
             ++ + + LDL T                           +Q+ + RQ     ++  KR
Sbjct: 188 PSSQSDFDRLDLSTNSFLEKNLELLMESVDELSQEQGKFNYYQRNLARQQAQIQQWLQKR 247

Query: 154 MQENQARAAKDEPPLPEED 172
             EN  R A+ E PLPEED
Sbjct: 248 KAENAQREARGEEPLPEED 266

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, differentiation, and apoptosis, and EIF3h in patients with non-small cell lung cancer (NSCLC) improves survival if treated with the Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor (EGFR-TKI), Gefitinib. Plant eIF3h is implicated in translation of specific mRNAs. Length = 266

>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 1   MMRRLRRVNVDHYHVGWYQS-SDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGF 59
           M   L++VN D   VGWY S  D + F S   + +   YQ     +VVLI D  K+ +G 
Sbjct: 65  MDEELKKVNKDLEIVGWYHSHPDESPFPSEVDVATHESYQAPWPISVVLIVDPIKSFQGR 124

Query: 60  LTLKAYRLTP 69
           L+L+A+RLTP
Sbjct: 125 LSLRAFRLTP 134

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG1560|consensus	339		100.0
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	100.0
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	99.95
KOG1555|consensus	316		99.82
cd08058	119	MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w	99.69
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	99.6
KOG1554|consensus	347		99.53
smart00232	135	JAB_MPN JAB/MPN domain. Domain in Jun kinase activ	99.42
cd08057	157	MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai	99.39
cd08067	187	MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu	99.36
cd08063	288	MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit	99.27
cd08068	244	MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun	99.22
cd08066	173	MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ	99.15
cd07767	116	MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al	99.12
cd08062	280	MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w	99.1
PF01398	114	JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte	98.82
PLN03246	303	26S proteasome regulatory subunit; Provisional	98.71
KOG2880|consensus	424		97.64
cd08056	252	MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit	97.64
COG1310	134	Predicted metal-dependent protease of the PAD1/JAB	97.29
KOG2975|consensus	288		97.17
cd08070	128	MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit	97.16
KOG1556|consensus	309		95.77
cd08061	274	MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l	95.19
PF14464	104	Prok-JAB: Prokaryotic homologs of the JAB domain;	90.94
cd08072	117	MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1	89.95
PF05021	306	NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge	86.99
cd08060	182	MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family	85.78

>KOG1560|consensus

Probab=100.00  E-value=1.9e-78  Score=532.50  Aligned_cols=223  Identities=48%  Similarity=0.815  Sum_probs=214.4

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      |||.||.||+|+.+||||||+++|+|+|..++|+||.||+.++++||+||||++|++|.|++|||||||++|++++|++|
T Consensus        87 mlrrlr~vnid~~hVGwYqs~~vgs~lS~~lveSqy~YQ~a~pesVvliYD~~kssqG~L~lrAyrLTp~am~~~kekdw  166 (339)
T KOG1560|consen   87 MLRRLRYVNIDHLHVGWYQSAYVGSFLSPALVESQYAYQKAIPESVVLIYDPIKSSQGTLSLRAYRLTPEAMAAHKEKDW  166 (339)
T ss_pred             HHHHhhhcCccceeeeeeeeehhccccCHHHHHHHHHHHhcCCccEEEEeccccccCceEEeehhhcCHHHHHHHhcCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCC--CCCC-CCCcccccchH-----------------------
Q psy9211          81 TPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGL--VSPA-EGNNFLDLGTA-----------------------  134 (226)
Q Consensus        81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~--~~~~-~~~~~L~l~~~-----------------------  134 (226)
                      +++.++++||||+++|+||||.|+||||.|++|++|..+  .+.+ +.+++|||++.                       
T Consensus       167 tpealk~~nltyenmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~vDEl~qe~~~  246 (339)
T KOG1560|consen  167 TPEALKSANLTYENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERVDELHQEIVN  246 (339)
T ss_pred             CHHHHHhcCCCHHHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999843  3333 33788999865                       


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhhhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy9211         135 ---FQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEEDLNKIFRPIPVPPRLSPMLMAAQVSAYADHISQFSSQSLA  211 (226)
Q Consensus       135 ---yqR~l~req~~~~q~~~kR~~EN~~R~~~ge~plpeed~~~~fK~~~~PsrL~~lL~s~qi~~~c~~i~~~~~~~l~  211 (226)
                         |||+++||+++++||++||++||+.|.++|+||||||||.++||+|++|.|||++|+|+||+++|++|.+||+++|+
T Consensus       247 l~kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd~kr~fk~pq~p~rLdslLiS~qint~aq~ike~tSqnl~  326 (339)
T KOG1560|consen  247 LNKYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDDWKRIFKPPQEPRRLDSLLISGQINTSAQQIKEFTSQNLS  326 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHHHHHHhcCCCchhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy9211         212 KLYMMEAVKSHN  223 (226)
Q Consensus       212 Klf~~~~~~~~~  223 (226)
                      |||+++++|..|
T Consensus       327 Klfiaea~~~~k  338 (339)
T KOG1560|consen  327 KLFIAEALQESK  338 (339)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=100.00  E-value=1e-50  Score=360.68  Aligned_cols=172  Identities=50%  Similarity=0.804  Sum_probs=166.3

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      |++++|++|.|+++|||||||++|+|++.++|+++++||..++++|+|||||.+|.+|++++||||+++.+|.++++|+|
T Consensus        68 m~~~~r~v~~~e~iVGWY~S~p~~~~~~~s~id~~~~~q~~~~~~v~Li~D~~~s~~g~l~lkAyrl~~~~~~~~~~~~~  147 (266)
T cd08065          68 MMRLLREVNVDHNHVGWYQSTYLGSFFTRDLIETQYNYQEAIEESVVLVYDPSKTSQGSLSLKAYRLSEKFMELYKEGKF  147 (266)
T ss_pred             HHHHHHHhCCCCcEEEeEeecCCCCcCCHHHHHHHHHHhccCCCCEEEEECCCcccccceeeEEEEEcHHHHHHhhcCCc
Confidence            89999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             CHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCCCCCC-CCCcccccchH-------------------------
Q psy9211          81 TPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPA-EGNNFLDLGTA-------------------------  134 (226)
Q Consensus        81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~~~~~-~~~~~L~l~~~-------------------------  134 (226)
                      +++.++++++++.+||+||||+|+|++|+++||.+|..+.+.+ ++++.|+|+++                         
T Consensus       148 ~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~l~~e~~~~~  227 (266)
T cd08065         148 STESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDELSQEQGKFN  227 (266)
T ss_pred             CHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877776 78899999765                         


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhh
Q psy9211         135 -FQQQVVRQAQDKHRYQAKRMQENQARAAKDEPPLPEED  172 (226)
Q Consensus       135 -yqR~l~req~~~~q~~~kR~~EN~~R~~~ge~plpeed  172 (226)
                       |||+++|||++++||++||++||++|+++|++|||+||
T Consensus       228 ~y~r~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~  266 (266)
T cd08065         228 YYQRNLARQQAQIQQWLQKRKAENAQREARGEEPLPEED  266 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence             99999999999999999999999999999999999986

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=99.95  E-value=3.5e-28  Score=216.69  Aligned_cols=121  Identities=19%  Similarity=0.268  Sum_probs=112.9

Q ss_pred             Chh--HHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCcc-CCceeeEEEEecCHHHHHH--
Q psy9211           1 MMR--RLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKT-SRGFLTLKAYRLTPQAIQM--   74 (226)
Q Consensus         1 Mm~--~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s-~~G~lslkAfRLs~~~~~~--   74 (226)
                      |++  +++++|++.++|||||||| +|||+|..+|+||..||...+++|+||+||.+| ++|+++|+|||+++.++.+  
T Consensus        74 m~~~~~~~~~~~~~~vVGWYHSHP~~g~~~S~~Dv~tq~~yq~~~~~~V~lViDP~~t~~~g~~~i~Afr~~~~~~~~~~  153 (268)
T cd08069          74 MVQYEMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQDPFVAVVVDPIRSLVKGKVVIGAFRTIPPGYKPLE  153 (268)
T ss_pred             HHHHHHHHHhCCCceeEeeeccCCCcCCcCCHHHHHHHHHHHhcCCCcEEEEEeCCccccCCcceeeEEEEECccccccC
Confidence            667  9999999999999999999 999999999999999999999999999999999 8999999999999999876  


Q ss_pred             hhc-----CCCCHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCCCCC
Q psy9211          75 YKE-----GEFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSP  122 (226)
Q Consensus        75 ~ke-----~~~t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~~~~  122 (226)
                      +++     +.|+.+.++ ..+++.++|+||||.|++|+|++.+|..|.++.+.
T Consensus       154 ~~~~~s~~~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~~w~  205 (268)
T cd08069         154 PRQTTSNIGHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNKYWV  205 (268)
T ss_pred             cccCccccCccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHHHhHH
Confidence            555     789999999 88999999999999999999999999999876543

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>KOG1555|consensus

Probab=99.82  E-value=6.8e-21  Score=171.87  Aligned_cols=120  Identities=21%  Similarity=0.232  Sum_probs=107.3

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHH-HHHhhcC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQA-IQMYKEG   78 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~-~~~~ke~   78 (226)
                      ||++|+..|++..+|||||||| ||||.|.++|+||.+||...+++|+.++||++|..|+++++|||++..+ +....++
T Consensus       104 ~~~~l~~tGrp~~VVGWYHSHP~f~~wpS~vDi~tQ~syq~~~~r~~a~~v~~i~S~~g~vv~d~f~~In~~~~~~~~ep  183 (316)
T KOG1555|consen  104 MMDLLKQTGRPELVVGWYHSHPGFGCWPSLVDIDTQQSYQALSSRAVAVVVDPIQSPYGKVVPDAFSSINPQWISPGGEP  183 (316)
T ss_pred             HHHHHHhcCCcceEEeeccCCCCCCCCccccchhHHHHHhhhccCCcceeeecccCCCCCccCChhhhcCcccccCCCCC
Confidence            7899999999999999999999 9999999999999999999999999999999999999999999999877 5566788


Q ss_pred             CCCHHHHhh-----------cCCCCCCceEEeeeEEeccHHHHHHHhcccCCCCCC
Q psy9211          79 EFTPEALRA-----------IKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPA  123 (226)
Q Consensus        79 ~~t~~~l~~-----------~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~~~~~  123 (226)
                      +.++++++.           ||+  + .|+.+.|.+|..++...++.++...++..
T Consensus       184 rqtts~~~~m~~~~s~q~~~~g~--n-~y~~~ei~~~v~~~~~~~~~nv~~~s~~~  236 (316)
T KOG1555|consen  184 RQTTSNGGHMDMQESLQEDIHGL--N-RYYRIEIPLHVLPYEQLMLLNVPLKSWKS  236 (316)
T ss_pred             ccccccccccccchhHHhHhhcc--C-ceEEEEeeEEechhhhhchhccchhhhhh
Confidence            888876552           444  3 79999999999999999999998765543

>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic

Probab=99.69  E-value=2.9e-17  Score=129.32  Aligned_cols=65  Identities=23%  Similarity=0.315  Sum_probs=61.3

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLT   68 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs   68 (226)
                      |+.+++..++|.++|||||||| +|+|.|..+|++|++||...+++|+||+||.++   ++++||||||
T Consensus        54 ~~~~~~~~~~g~~~vG~YHSHP~~~~~pS~~Di~~~~~~q~~~p~~~~lI~s~~~~---~~~~~a~rl~  119 (119)
T cd08058          54 EELFNVQTGRPLLVVGWYHSHPTFTAWLSSVDIHTQASYQLMLPEAIAIVVSPKHR---NKDTGIFRLT  119 (119)
T ss_pred             HHHHHHHhCCCCeEEEEEecCCCCCCccCHHHHHHHHHHhccCCCeEEEEECcCCC---CcccceEEeC
Confidence            4667788999999999999999 999999999999999999999999999999885   8999999997

This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=99.60  E-value=2.7e-14  Score=127.08  Aligned_cols=101  Identities=22%  Similarity=0.367  Sum_probs=85.0

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccC--HHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFIS--LPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEG   78 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s--~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~   78 (226)
                      |++++|+||.|+.+||||++++   +++  ..+|..+++++...+++|+|++||..+. |++++||||+++.++  +. +
T Consensus        65 m~~~~kkv~~~~~vVGWY~tg~---~~~~~~~~Ih~~~~~~~~~~~pI~L~~D~~~~~-~~l~i~ay~~~~~~~--~~-~  137 (265)
T cd08064          65 MYELHQKVNPKEVIVGWYATGS---EITEHSALIHDYYSRECTSYNPIHLTVDTSLDD-GKMSIKAYVSSPLGV--PG-K  137 (265)
T ss_pred             HHHHHHHhCCCCcEEeeeeCCC---CCCccHHHHHHHHHhhCCCCCCEEEEEeCCCCC-CCcceEEEEEEeccc--CC-C
Confidence            8899999999999999999976   555  7789999888876668999999998765 489999999998752  11 1


Q ss_pred             CCCHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCCC
Q psy9211          79 EFTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLV  120 (226)
Q Consensus        79 ~~t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~~  120 (226)
                                  +...+|.|||++|+++.-+..-+.-+.+..
T Consensus       138 ------------~~~~~F~~ip~~i~~~eaE~i~v~~l~~~~  167 (265)
T cd08064         138 ------------TLGSMFVPIPLELLYSEAERVALDLLAKTL  167 (265)
T ss_pred             ------------CcceEEEEcceeeecCcHHHHHHHHHHhhc
Confidence                        567999999999999999888888876543

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

>KOG1554|consensus

Probab=99.53  E-value=4.3e-15  Score=132.31  Aligned_cols=114  Identities=22%  Similarity=0.282  Sum_probs=91.6

Q ss_pred             hhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccC-CceeeEEEEecCHHHHHHhhcCC
Q psy9211           2 MRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTS-RGFLTLKAYRLTPQAIQMYKEGE   79 (226)
Q Consensus         2 m~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~-~G~lslkAfRLs~~~~~~~ke~~   79 (226)
                      ++..+.+|+-+|+|||||||| .|||++..+|.||..=|+--+.=|++|+||.+|. -|+|.|-|||--|.=   |+.++
T Consensus       121 ~e~~k~~gr~envVGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rtlsagkv~iGAFRTyp~g---yk~~d  197 (347)
T KOG1554|consen  121 IEEAKNVGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRTLSAGKVNIGAFRTYPKG---YKPPD  197 (347)
T ss_pred             HHHHHHhhhhhceeeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCccccccCceeeceeecccCC---CCCCC
Confidence            467789999999999999999 9999999999999988888889999999999998 689999999998864   66554


Q ss_pred             CCHH---H-----HhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCC
Q psy9211          80 FTPE---A-----LRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGL  119 (226)
Q Consensus        80 ~t~~---~-----l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~  119 (226)
                      --+.   .     +.+.|+ .-.+|+.++|.+-.+.|...+|.-|-.+
T Consensus       198 ~~~seyqtipl~kied~gv-Hck~yysl~isyfks~ld~kll~~Lwnk  244 (347)
T KOG1554|consen  198 EPPSEYQTIPLNKIEDFGV-HCKQYYSLEISYFKSSLDMKLLELLWNK  244 (347)
T ss_pred             CCchhhhccchhhhhhccc-ceEEeeccchhhhhhhhhHHHHHHHHhh
Confidence            2222   2     222222 1357899999999998887777776443

>smart00232 JAB_MPN JAB/MPN domain

Probab=99.42  E-value=4e-13  Score=105.69  Aligned_cols=69  Identities=41%  Similarity=0.559  Sum_probs=64.4

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCH
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP   69 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~   69 (226)
                      |.+.+++++.+...|||||||+ .+++.|..++.++..|+.....+|.+++||.+|..|++.++|||+++
T Consensus        65 ~~~~~~~~~~~~~~vGwyhshp~~~~~pS~~D~~~~~~~~~~~~~~~~~~v~~~~s~~g~~~~~af~~~~  134 (135)
T smart00232       65 MDEELKKVNKDLEIVGWYHSHPDESPFPSEVDVATHESYQAPWPISVVLIVDPIKSFQGRLSLRAFRLTP  134 (135)
T ss_pred             HHHHHHhhCCCceEEEEEEcCCCCCCCcCHHHHHHHHHHHhcCCceEEEEECCCccccCcEEEEEEEecC
Confidence            4567789999999999999999 57899999999999999999999999999999999999999999985

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.

>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

Probab=99.39  E-value=4.7e-13  Score=110.20  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=61.2

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCC---ccCHHHHHHHHHHhHhcCCeEEEEEeCCc-cCCceeeEEEEecCHHH
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVAN---FISLPLIESQFHYQISIEEAVVLIYDTQK-TSRGFLTLKAYRLTPQA   71 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~---f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~-s~~G~lslkAfRLs~~~   71 (226)
                      |++++++|+.++.+||||++++.|.   +.+...|+.++.++ ..++.|+|++||.+ +.+|++.|+|||+++.+
T Consensus        65 m~~~~~~v~~~~~vVGWY~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~v~L~~D~~~~~~~~~l~i~ay~~~~~~  138 (157)
T cd08057          65 RYNLHKKVYPQEKIVGWYSIGSNNSNEISKSDNSLHSQFSLI-SEENPLILILDPSLQSDSEKLEISTFTSAQRE  138 (157)
T ss_pred             HHHHHHHhCCCCCEEEEEeecCCCCCCCChhHHHHHHHHHhc-cCCCCEEEEEcCCcccCCCcccEEEEEEecCC
Confidence            7899999999999999999999764   67777888888877 45778999999998 57899999999999653

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import

>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase

Probab=99.36  E-value=1e-12  Score=111.88  Aligned_cols=69  Identities=25%  Similarity=0.360  Sum_probs=59.5

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcC-------CeEEEEEeCCccC--CceeeEEEEecCHH
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIE-------EAVVLIYDTQKTS--RGFLTLKAYRLTPQ   70 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~-------~~V~lV~Dp~~s~--~G~lslkAfRLs~~   70 (226)
                      |++.|++.|.  ++|||||||| .++|.|..+|+||+.||...+       ++|+||+||..+.  ...-.|+||+..+.
T Consensus        70 ~~~~l~~~gl--~vVGwYHSHP~~~~~pS~~Di~tQ~~yQ~~~~~~~~~~~p~v~~I~~P~~~~~~~~~s~i~~f~~~~~  147 (187)
T cd08067          70 IRESLESRGL--SVVGWYHSHPTFPPNPSLRDIDTQLDYQIMFKGSDSGYEPCVGLICSPYDRRNSTPESQITCFWVMPP  147 (187)
T ss_pred             HHHHHHHcCC--EEEEEEecCCCCCcCCCHHHHHHHHHHHhhccccccCCCCeEEEEEccccCCCCCCCCcEEEEEEECC
Confidence            5778888886  9999999999 668999999999999999875       6999999999753  34578999999986


Q ss_pred             H
Q psy9211          71 A   71 (226)
Q Consensus        71 ~   71 (226)
                      .
T Consensus       148 ~  148 (187)
T cd08067         148 P  148 (187)
T ss_pred             C
Confidence            3

This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

Probab=99.27  E-value=4.1e-11  Score=107.96  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=82.3

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCcc-CCceeeEEEEecCHHHHHHhhcCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKT-SRGFLTLKAYRLTPQAIQMYKEGE   79 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s-~~G~lslkAfRLs~~~~~~~ke~~   79 (226)
                      |++++++||.|+.+||||++.+.|.+.+...|..|+.  ..++..|+|++||..+ .+|.+.++||+..+....    + 
T Consensus        72 m~~~~kkV~~~~~vVGWY~tg~~~~~~~~~~Ih~~~~--~~~~~pv~L~~D~~~~~~~~~lpi~ay~s~~~~~~----~-  144 (288)
T cd08063          72 RLEQFKQVFKDLDFVGWYTTGPGGPTESDLPIHKQIL--EINESPVLLLLDPEANASGKDLPVTIYESVLELVD----G-  144 (288)
T ss_pred             HHHHHHHhccCCceEEEEecCCCCCCHHHHHHHHHHH--hhCCCcEEEEEccccccCCCCCceeEEEEEEeccC----C-
Confidence            7899999999999999999999999999999998886  4467789999999986 789999999997765332    1 


Q ss_pred             CCHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccC
Q psy9211          80 FTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDG  118 (226)
Q Consensus        80 ~t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~  118 (226)
                                 ....+|.++|.+|..+.-+..-+..+.+
T Consensus       145 -----------~~~~~F~~i~~~i~~~eaErIgv~~l~~  172 (288)
T cd08063         145 -----------EATLRFRELPYTIETGEAERIGVDHVAR  172 (288)
T ss_pred             -----------ccccEEEeeeeEEEeccCceeeHHHHHh
Confidence                       2357899999999998766555555543

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav

>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

Probab=99.22  E-value=2.1e-11  Score=107.78  Aligned_cols=85  Identities=22%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             hHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCC----ccCCceeeEEEEecCHHHHHHhhc
Q psy9211           3 RRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQ----KTSRGFLTLKAYRLTPQAIQMYKE   77 (226)
Q Consensus         3 ~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~----~s~~G~lslkAfRLs~~~~~~~ke   77 (226)
                      ++++.+|++..+|||||||| .++|.|..||++|..||...+..|.||+++.    .+..|++.++|||+.+.-=     
T Consensus        80 ~~~~~~~rgl~vVGwYHSHP~~~a~PS~~Dv~tq~~~q~~~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g~~-----  154 (244)
T cd08068          80 RLTEETGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQGNK-----  154 (244)
T ss_pred             HHHhhccCCceEEEEEecCCCCCCCCCHhHHHHHHHHHhhCCCcEEEEEEecCCccccccCCEEEEEEEecCCCC-----
Confidence            46778999999999999999 9999999999999999988899999998643    5668999999999987411     


Q ss_pred             CCCCHHHHhhcCCCCCCceEEeeeEEec
Q psy9211          78 GEFTPEALRAIKVGFENLLLEVPVKIRN  105 (226)
Q Consensus        78 ~~~t~~~l~~~~lt~~~i~~EiPI~i~n  105 (226)
                                   ...-...|+|+.|-.
T Consensus       155 -------------~~~~~~~e~pl~i~~  169 (244)
T cd08068         155 -------------AGQYERIEVPLEIVP  169 (244)
T ss_pred             -------------CCcceEEEeeeEEec
Confidence                         234577899998843

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai

>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family

Probab=99.15  E-value=5e-11  Score=100.35  Aligned_cols=66  Identities=20%  Similarity=0.402  Sum_probs=58.2

Q ss_pred             CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecC-HHHHHHhhcCCC
Q psy9211          10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLT-PQAIQMYKEGEF   80 (226)
Q Consensus        10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs-~~~~~~~ke~~~   80 (226)
                      .+-.+|||||||+ .++|.|..+|+||.+||...++++.||++|     |..+++||||+ +.-++..++++-
T Consensus        73 ~gle~vGwyHSHP~~~~~pS~~Dv~t~~~~~~~~p~~~~lIvSp-----~~~~l~afrl~~~~g~~~~~~~~~  140 (173)
T cd08066          73 HDLITLGWIHTHPTQTCFLSSVDLHTHCSYQLMLPEAIAIVCAP-----KYNEFGIFRLTDPPGLDEILNCKK  140 (173)
T ss_pred             CCCeeEEEEeccCCCCCccCHHHHHHHHHHHhcCCCeEEEEECC-----CCcEEeEEEeecCCcceecccCCc
Confidence            4568999999999 889999999999999999999999999998     47999999999 666766666554

AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al

>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains

Probab=99.12  E-value=1.1e-10  Score=89.84  Aligned_cols=64  Identities=23%  Similarity=0.366  Sum_probs=55.6

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCC-CccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEE
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVA-NFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAY   65 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAf   65 (226)
                      |+...+.++.|..+|||||||+.| +|.+..+++++..||+..+++|+||+|+..... .+.++||
T Consensus        52 ~~~~~~~~~~~~~iVGwyhshp~~~~~~s~~dv~~~~~~q~~~~~~v~li~~~~~~~~-~~~~~~~  116 (116)
T cd07767          52 MYLDFKKLNAGLRIVGWYHTHPKPSCFLSPNDLATHELFQRYFPEKVMIIVDVKPKDL-GNSWKCY  116 (116)
T ss_pred             HHHHHHHhcCCCeEEEEEEcCCCCCCccCHHHHHHHHHHHHhCCCCEEEEEECCCccC-CCCcccC
Confidence            355678899999999999999966 799999999999999999999999999987432 5778886

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J

>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

Probab=99.10  E-value=2.3e-09  Score=96.55  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=80.1

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      |++++++||.++.+||||+|++-   ++..++..+-.|+.-+++.|.|++||... .+.+.++||...+.-.   .+|  
T Consensus        71 m~~~~kkv~~~e~vVGWY~tg~~---~~~~d~~ih~~~~~~~~~pv~l~vd~~~~-~~~lpi~aY~s~~~~~---~~g--  141 (280)
T cd08062          71 MYGMFKKVNAKEKIVGWYSTGPK---LRPNDLDINELFRRYCPNPVLVIIDVRPK-DLGLPTEAYIAVEEVH---DDG--  141 (280)
T ss_pred             HHHHHHHhCCCCCeEEEecCCCC---CCcchHHHHHHHHHhCCCCEEEEEecCCC-CCCCceEEEEEeeecc---CCC--
Confidence            78999999999999999999873   45677788888899899999999999875 6679999999877433   111  


Q ss_pred             CHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccC
Q psy9211          81 TPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDG  118 (226)
Q Consensus        81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~  118 (226)
                               -....+|.+||.+|....-+..-+.-+.+
T Consensus       142 ---------~~~~~~F~~vp~~i~~~eaE~igve~l~r  170 (280)
T cd08062         142 ---------TPTSKTFVHVPSEIGAEEAEEVGVEHLLR  170 (280)
T ss_pred             ---------CcceeEEEEcceEeeccchHHHHHHHHHh
Confidence                     11467999999999998776666666644

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.

>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors

Probab=98.82  E-value=4.5e-09  Score=81.47  Aligned_cols=44  Identities=36%  Similarity=0.505  Sum_probs=37.6

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEE   44 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~   44 (226)
                      |+++++.++-+..+||||||++ .++|.|..+|++|..||..+++
T Consensus        70 ~~~~~~~~~~~~~iVGWY~s~p~~~~~~S~~di~~q~~~q~~~~~  114 (114)
T PF01398_consen   70 MIELLKKVNPNLEIVGWYHSHPNISCFPSPTDIETQKQYQRMNPN  114 (114)
T ss_dssp             HHHHHHHCSTTSEEEEEEEEESSS-SS--HHHHHHHHHHHHHTTT
T ss_pred             HHhhhccccccceEEEEEEccCCccccCCHHHHHHHHHHHHhCCC
Confidence            5688999999999999999999 6699999999999999998864

This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.

>PLN03246 26S proteasome regulatory subunit; Provisional

Probab=98.71  E-value=3.3e-07  Score=83.59  Aligned_cols=101  Identities=17%  Similarity=0.267  Sum_probs=74.9

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      |++++|+||.|+.+||||++.+   =++..++.-+-.|..-.++.|.|++|+.- ..|.+.++||...+.-..   .+  
T Consensus        76 m~~~~k~V~~~~~vVGWY~tg~---~i~~~d~~IH~~~~~~~~~Pv~L~vD~~~-~~~~lpi~aY~s~~~~~~---~~--  146 (303)
T PLN03246         76 MFGMFKRINAKEHVVGWYSTGP---KLRENDLDIHELFNDYVPNPVLVIIDVQP-KELGIPTKAYYAVEEVKE---NA--  146 (303)
T ss_pred             HHHHHHHhCCCCcEEeeecCCC---CCCcchHHHHHHHHhhCCCCeEEEEecCC-CCCCCceEEEEEEEeccC---CC--
Confidence            8999999999999999999876   23334444455667778889999999865 356799999997764331   01  


Q ss_pred             CHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccC
Q psy9211          81 TPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDG  118 (226)
Q Consensus        81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~  118 (226)
                              .-+...+|.+||.+|....-+..-+.-+.+
T Consensus       147 --------~~~~~~~F~~vp~~i~~~EaE~Igve~l~r  176 (303)
T PLN03246        147 --------TQKSQKVFVHVPSEIGAHEAEEIGVEHLLR  176 (303)
T ss_pred             --------CcccccEEEECCeeeeecCHHHHHHHHHHh
Confidence                    012356899999999999877766666654

>KOG2880|consensus

Probab=97.64  E-value=2e-05  Score=72.92  Aligned_cols=67  Identities=22%  Similarity=0.538  Sum_probs=54.8

Q ss_pred             CCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHH-HHH---hhcCCCCH
Q psy9211          11 DHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQA-IQM---YKEGEFTP   82 (226)
Q Consensus        11 D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~-~~~---~ke~~~t~   82 (226)
                      +-..+||-|+|| -+||+|++++-|.++||-..|+||++|.-|..-..|-     |||++.. |+.   +++.-|-+
T Consensus       324 ~L~tlGWIHTHPTQt~FmSSVDlHTHcSYQiMlPEAiAIV~aPk~~~tGi-----FrLt~~~Gm~~i~~C~~~GFHp  395 (424)
T KOG2880|consen  324 ELLTLGWIHTHPTQTCFMSSVDLHTHCSYQIMLPEAIAIVCAPKSKTTGI-----FRLTDPGGMEVIRGCRKKGFHP  395 (424)
T ss_pred             cceeeeeeecCCccchhheeccccccceeeeecchheeEEeccccCCcce-----EEecCCcchHHHhhcccCCCCC
Confidence            346799999999 8999999999999999999999999999998655564     8999654 554   44444655

>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8

Probab=97.64  E-value=0.00022  Score=63.62  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             CceeEEEEeec-CCCccCHHHHHHHHHHhHhcC-----CeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHHHH
Q psy9211          12 HYHVGWYQSSD-VANFISLPLIESQFHYQISIE-----EAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEAL   85 (226)
Q Consensus        12 ~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~-----~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~~l   85 (226)
                      =..+||-|+++ =.+|++..+|.++..||..++     ++|+++.-+.   .|.++|.||+||++-++..++++-...+.
T Consensus       106 Le~LGWIHTqp~e~~~Lss~Dv~tha~~~~~~~~w~~~~~V~it~Sft---pGs~sl~ay~LT~~G~~wg~~n~d~~~~~  182 (252)
T cd08056         106 LEPLGWIHTQPNELPQLSPQDVTTHAKILADNPSWDGEKTVILTCSFT---PGSCSLTAYKLTPEGYEWGKQNKDLGNNT  182 (252)
T ss_pred             CEeeEEEEcCCCCccccCHHHHHHHHHHHHhccccCCCcEEEEEEcCC---CCceEEEEEecCHHHHHHHHhCccccccC
Confidence            45799999999 446999999999999999997     7999998665   89999999999999998888876543221


Q ss_pred             hhcCCCCCCceEEeeeEE
Q psy9211          86 RAIKVGFENLLLEVPVKI  103 (226)
Q Consensus        86 ~~~~lt~~~i~~EiPI~i  103 (226)
                       -.|.. ...++.+.+-+
T Consensus       183 -p~g~~-~~~~ek~qllL  198 (252)
T cd08056         183 -PKGYS-PSFYEKVQLLL  198 (252)
T ss_pred             -CCCCC-ccccceeEEEE
Confidence             12221 34666666654

Members of this family are found in pre-mRNA-processing factor 8 (Prp8) which is a critical splicing factor, interacting with several other spliceosomal proteins, snRNAs, and the pre-mRNA, thus organizing and stabilizing the spliceosome catalytic core. Prp8 is one of the largest and most highly conserved of nuclear proteins, occupying a central position in the catalytic core of the spliceosome. Its C-terminal domain exhibits a JAB1/MPN-like core similar to deubiquitinating enzymes, but does not show catalytic isopeptidase activity, possibly because the putative isopeptidase center is covered by insertions and terminal appendices that are grafted onto this core, thus impairing the metal binding site. It is proposed that this domain is a protein interaction domain instead of a Zn(2+)-dependent metalloenzyme as proposed for some MPN proteins. The DEAD-box protein Brr2 and t

>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]

Probab=97.29  E-value=0.00026  Score=56.62  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=34.9

Q ss_pred             HhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCC-eEEEEEeCCccCCc
Q psy9211           5 LRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEE-AVVLIYDTQKTSRG   58 (226)
Q Consensus         5 Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~-~V~lV~Dp~~s~~G   58 (226)
                      +.....+..+|||||||| .++|.|..++.    ++...+- -++++.+|.....+
T Consensus        62 ~~~~~~g~~vvg~yHSHP~~~~~pS~~D~~----~~~~~~~~~~iv~~~~~~~~~~  113 (134)
T COG1310          62 LAAEDAGEVVVGWYHSHPGGPPYPSEADRR----LSKLGPLPWLIVSVPPGRVHKG  113 (134)
T ss_pred             HHHhhCCCEEEEEEcCCCCCCCCcCHHHHh----hccccCCCEEEEEcCCCceeEE
Confidence            334445599999999999 67999999997    4554443 46666666444443

>KOG2975|consensus

Probab=97.17  E-value=0.0032  Score=56.41  Aligned_cols=99  Identities=23%  Similarity=0.346  Sum_probs=72.3

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGE   79 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~   79 (226)
                      |+...+.+|-.+.+||||.+.+ ...  +..+|-..  |-.-.+++|.|.+|..-+ .|.++||||--++--+       
T Consensus        87 M~~l~~k~npnE~vvGWyaTg~dvt~--~sslihdy--Yare~~~pvhLtVDT~~~-n~rm~ikaYvss~~Gv-------  154 (288)
T KOG2975|consen   87 MYELHKKVNPNELVVGWYATGHDVTE--HSSLIHDY--YAREAPNPVHLTVDTSLQ-NGRMSIKAYVSSLMGV-------  154 (288)
T ss_pred             HHHHhcccCCCceeEEEEecCCCccc--chhHHHHH--hhccCCCCeEEEEecccc-CCccceeEEEEeccCC-------
Confidence            7788899999999999998765 332  23455433  444567899999999755 7899999997665311       


Q ss_pred             CCHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCC
Q psy9211          80 FTPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGL  119 (226)
Q Consensus        80 ~t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~  119 (226)
                              -|-+..-+|.+||++|++-.-+..-|.-+.+.
T Consensus       155 --------pg~~~~~mF~plpvel~~~~~ervgl~li~kt  186 (288)
T KOG2975|consen  155 --------PGRTMGVMFTPLPVELAYYDAERVGLDLIEKT  186 (288)
T ss_pred             --------CCcccceeeeeeeeEEeecchhhhHHHHHHHh
Confidence                    23333459999999999988777766666554

>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)

Probab=97.16  E-value=0.00086  Score=53.15  Aligned_cols=52  Identities=21%  Similarity=0.109  Sum_probs=41.1

Q ss_pred             CCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHH
Q psy9211          11 DHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQ   70 (226)
Q Consensus        11 D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~   70 (226)
                      +..+|||||||| .+++.|..++.++..     ...+-+|+.+...   .-.++||++...
T Consensus        69 g~~~vG~~HSHP~~~~~PS~~D~~~~~~-----~~~~~lIv~~~~~---~~~~~~~~~~~~  121 (128)
T cd08070          69 GLEVVGIYHSHPDGPARPSETDLRLAWP-----PGVSYLIVSLAGG---APELRAWRLEGG  121 (128)
T ss_pred             CCeEEEEEeCCCCCCCCCCHHHHHhccC-----CCCeEEEEECCCC---CcEEEEEEEcCC
Confidence            468999999999 569999999987753     2677888876533   578999999753

This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>KOG1556|consensus

Probab=95.77  E-value=0.014  Score=52.10  Aligned_cols=90  Identities=20%  Similarity=0.328  Sum_probs=59.1

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      |-.|.+.||.-+.+|||||+.|   -+...+|+---.+-.-.++.|.+|+|.-.-.-| |--+||--.            
T Consensus        79 M~~mfkKvNakekivGWYhTGP---kl~~nDl~In~l~k~y~pnpvLvIIdvkpk~~g-LPT~AY~aV------------  142 (309)
T KOG1556|consen   79 MFGMFKKVNAKEKVVGWYHTGP---KLRENDLDINELLKRYVPNPVLVIIDVKPKELG-LPTEAYIAV------------  142 (309)
T ss_pred             HHHHHHHhcchhheeeeeccCC---ccccchhhHHHHHhhcCCCceEEEEecccccCC-CCchheeee------------
Confidence            6789999999999999999965   344455544444455578899999998633222 333343211            


Q ss_pred             CHHHHhhcCCCCCCceEEeeeEEeccHH
Q psy9211          81 TPEALRAIKVGFENLLLEVPVKIRNSPL  108 (226)
Q Consensus        81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L  108 (226)
                        +.+...|-..+.-|+-+|-.|.--.-
T Consensus       143 --eev~dDgt~t~ktF~Hvps~I~AeEA  168 (309)
T KOG1556|consen  143 --EEVKDDGTPTSKTFVHVPSEIEAEEA  168 (309)
T ss_pred             --eeeecCCCCccceeEecCcccchhHH
Confidence              22333444556788888888876544

>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain

Probab=95.19  E-value=0.064  Score=48.52  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=58.1

Q ss_pred             CceeEEEEeec-C----CCccCHHHHHHHHHHhH------hcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211          12 HYHVGWYQSSD-V----ANFISLPLIESQFHYQI------SIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus        12 ~~~VGwYqS~~-~----G~f~s~~~Ietq~~yQ~------~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      =..|||=.|+. -    +.|+|..-|-....||.      -..+.|.+|+.|..  .|.+++.||.+|+..|.+.+++=+
T Consensus        93 L~~VG~IfT~l~~~~~d~~~LSs~Evi~aA~~Q~~~~~g~~gskFvT~vvs~~~--~g~i~~~ayQvSdq~~~lv~~~~i  170 (274)
T cd08061          93 LERVGWIFTDLPREDKDGYFLSAEEVILAAKFQLKHPTGKFGSKFVTVVVTGDK--DGQIHFEAYQVSDQAMALVRDGLL  170 (274)
T ss_pred             CeEEEEEEecCCCCCCCceeECHHHHHHHHHHhhhcccCCcCCeEEEEEEecCC--CCceeeeeeeecHHHHHHHHcCcc
Confidence            36899999998 4    67999999999999996      34578889999964  499999999999999999998755


Q ss_pred             CH
Q psy9211          81 TP   82 (226)
Q Consensus        81 t~   82 (226)
                      .+
T Consensus       171 ~~  172 (274)
T cd08061         171 LP  172 (274)
T ss_pred             cc
Confidence            44

Npl4p (nuclear protein localization-4) is identical to Hmg-CoA reductase degradation 4 (HRD4) protein and contains a domain that is part of the pfam clan MPN/Mov34-like. Npl4 plays an intermediate role between endoplasmic reticulum-associated degradation (ERAD) substrate ubiquitylation and proteasomal degradation. Npl4p associates with Cdc48p (Cdc48 in yeast and p97 or valosin-containing protein (VCP) in higher eukaryotes), the highly conserved ATPase of the AAA family, via ubiquitin fusion degradation-1 protein (Ufd1p) to form a Cdc48p-Ufd1p-Npl4p complex which then functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.

>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A

Probab=90.94  E-value=0.25  Score=36.93  Aligned_cols=31  Identities=23%  Similarity=0.078  Sum_probs=21.9

Q ss_pred             hhCCCCceeEEEEeecCC-CccCHHHHHHHHH
Q psy9211           7 RVNVDHYHVGWYQSSDVA-NFISLPLIESQFH   37 (226)
Q Consensus         7 ~vn~D~~~VGwYqS~~~G-~f~s~~~Ietq~~   37 (226)
                      ..+.+...||.|||||-| .+.|..|+.+...
T Consensus        54 ~~~~~~~~vg~~HSHP~~~a~pS~~D~~~~~~   85 (104)
T PF14464_consen   54 ARERGLEIVGIWHSHPSGPAFPSSTDIRSMRD   85 (104)
T ss_dssp             HHHHT-EEEEEEEEESSSSSS--HHHHHTHCC
T ss_pred             hhcccceeeEEEEcCCCCCCCCCHHHHHhhhc
Confidence            345567899999999955 5999999976653

>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme

Probab=89.95  E-value=1.1  Score=35.23  Aligned_cols=51  Identities=18%  Similarity=-0.071  Sum_probs=36.0

Q ss_pred             CCceeEEEEeecCC-CccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCH
Q psy9211          11 DHYHVGWYQSSDVA-NFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP   69 (226)
Q Consensus        11 D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~   69 (226)
                      +-..||.|||||.| .+-|..++....     .+..+-+|+.+-.   +.=.+|||++.-
T Consensus        58 g~~ivgi~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~---~~~~~~a~~~~g  109 (117)
T cd08072          58 DMSIVGSVHSHPSGSPRPSDADLSFFS-----KTGLVHIIVGYPY---DEDDWRAYDSDG  109 (117)
T ss_pred             CCeEEEEEEcCCCCCCCCCHHHHHhhh-----cCCCEEEEEECcC---CCCCEEEEecCC
Confidence            45799999999955 888999986332     3667777775431   224588998753

This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport

Probab=86.99  E-value=3.1  Score=38.33  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             ceeEEEEeecC----------------CCccCHHHHHHHHHHhHhcC-------------CeEEEEEeCCccCCceeeEE
Q psy9211          13 YHVGWYQSSDV----------------ANFISLPLIESQFHYQISIE-------------EAVVLIYDTQKTSRGFLTLK   63 (226)
Q Consensus        13 ~~VGwYqS~~~----------------G~f~s~~~Ietq~~yQ~~~~-------------~~V~lV~Dp~~s~~G~lslk   63 (226)
                      ..|||--++..                +-|+|..-|-....+|...+             +.|.+|+.+-  ..|.+.+.
T Consensus        59 ~rVG~IfTdl~~~~~~~g~v~~~r~~~~~~LSs~Eii~aA~~Q~~~p~~~~~s~~g~fgSkFVT~vvsg~--~~g~i~~~  136 (306)
T PF05021_consen   59 ERVGWIFTDLTDDGSGDGTVKCKRHKDSYFLSSLEIIFAAKLQNKHPNPCKYSETGYFGSKFVTCVVSGD--EEGEIHFE  136 (306)
T ss_pred             EEEEEEEecCcccccCCCceeeccccccccccHHHHHHHHHHHHhcCccccccCCCccCCeEEEEEEeCC--CCCceeeE
Confidence            68999888865                37889998999999998652             4688888883  57999999


Q ss_pred             EEecCHHHHHHhhcCCCC
Q psy9211          64 AYRLTPQAIQMYKEGEFT   81 (226)
Q Consensus        64 AfRLs~~~~~~~ke~~~t   81 (226)
                      ||.+|++.|.++++|=+.
T Consensus       137 ayQvS~q~~~Lv~~~~l~  154 (306)
T PF05021_consen  137 AYQVSNQCVALVRAGILE  154 (306)
T ss_pred             EeeehHHHHHHHHCCccc
Confidence            999999999999977443

Using a diverse set of substrates and direct ubiquitination assays, analysis revealed that HRD4/NPL4 is required for a poorly characterised step in ER-associated degradation following ubiquitination of target proteins but preceding their recognition by the 26S proteasome []. Npl4p physically associates with Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 complex functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation or even more specific processing [].

>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p)

Probab=85.78  E-value=2.7  Score=35.71  Aligned_cols=47  Identities=19%  Similarity=0.304  Sum_probs=28.9

Q ss_pred             CCceeEEEEeec-CCCccCHHHHH-HHHHHhHhcCCeEEEEEeCCccCC
Q psy9211          11 DHYHVGWYQSSD-VANFISLPLIE-SQFHYQISIEEAVVLIYDTQKTSR   57 (226)
Q Consensus        11 D~~~VGwYqS~~-~G~f~s~~~Ie-tq~~yQ~~~~~~V~lV~Dp~~s~~   57 (226)
                      +-..||+||||+ ++.---...-. -.=.-++..++++++++|-.+...
T Consensus        69 gl~IvG~Yhsh~~~~d~~~~~~a~kIadki~~~~~~a~ll~vdn~~l~~  117 (182)
T cd08060          69 GLVIVGYYQANERLDDSSPSPVAKKIADKIAENFSNACLLMVDNEKLTL  117 (182)
T ss_pred             CCEEEEEEecCCcccCCCCcHHHHHHHHHHHHhCCCCEEEEEeCccccc
Confidence            347999999999 65322211111 111234455689999999988743

This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	2e-13
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	5e-09
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	2e-07
2znr_A	178	AMSH-like protease; metal binding protein, alterna	4e-05

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
             ++ ++V  D   +GWY + D      + +   Q       E  ++L  +    S   L
Sbjct: 75  KEQQYKQVFSDLDFIGWYTTGDNPTADDIKI---QRQIAAINECPIMLQLNPLSRSVDHL 131

Query: 61  TLKAYR 66
            LK + 
Sbjct: 132 PLKLFE 137

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 1   MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFL 60
           M    ++VN     VGWY +      +    I      +     +V++I D +    G L
Sbjct: 79  MYGMFKKVNARERIVGWYHTG---PKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG-L 134

Query: 61  TLKAYRLTPQAIQ-------MYKEGEFTPEALRAIKVGFENLL 96
             +AY    +           ++       A  A +VG E+LL
Sbjct: 135 PTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLL 177

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 11  DHYHVGWYQS-SDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP 69
               +GW  +      F+S   + +   YQ+ + E+V ++   +    G      ++LT 
Sbjct: 114 GLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETG-----FFKLTD 168

Query: 70  QAIQMYKE 77
             ++    
Sbjct: 169 HGLEEISS 176

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 11  DHYHVGWYQS-SDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP 69
           D   +GW  +      F+S   + +   YQ+ + EA+ ++   +    G      +RLT 
Sbjct: 81  DLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTG-----IFRLTN 135

Query: 70  QAIQM 74
             +  
Sbjct: 136 AGMLE 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	99.96
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	99.67
2znr_A	178	AMSH-like protease; metal binding protein, alterna	99.51
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	99.49
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	99.45
4b4t_U	338	RPN8, 26S proteasome regulatory subunit RPN8; hydr	99.03
2kcq_A	153	MOV34/MPN/PAD-1 family; NESG, structure, structura	98.3
2kks_A	146	Uncharacterized protein; NESG, structural genomics	98.15
2og4_A	254	PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN	97.74
2p8r_A	273	PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t	97.72
1oi0_A	124	AF2198, hypothetical protein AF2198; proteasome, d	97.31
3sbg_A	565	PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain,	95.12

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8e-30  Score=229.65  Aligned_cols=200  Identities=17%  Similarity=0.252  Sum_probs=126.9

Q ss_pred             ChhHHhhhCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhc-C
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKE-G   78 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke-~   78 (226)
                      |++++|++|+|.++|||||||| +|||+|..+|+||+.||...+++|+|||||++|.+|+++|+|||++|..+....+ +
T Consensus        91 m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~  170 (306)
T 4b4t_V           91 MMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEP  170 (306)
T ss_dssp             HHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCC
T ss_pred             HHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCc
Confidence            7899999999999999999998 9999999999999999999999999999999999999999999999998766543 3


Q ss_pred             CCCHH--------HHhhcCCCCCCceEEeeeEEeccHHHHHHHhcccCCCCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q psy9211          79 EFTPE--------ALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVDGLVSPAEGNNFLDLGTAFQQQVVRQAQDKHRYQ  150 (226)
Q Consensus        79 ~~t~~--------~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~~~~~~~~~~~~L~l~~~yqR~l~req~~~~q~~  150 (226)
                      +.++.        .+...+.++.++|+++||.+++|.|.+.+|..|.++.+...    |.+.. |.....+...++..+.
T Consensus       171 ~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~----l~~~~-~~~~~~~~~~~i~~m~  245 (306)
T 4b4t_V          171 RQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSG----LKMYD-YEEKEESNLAATKSMV  245 (306)
T ss_dssp             SCC----------------------CEEECSCCCCCSSCTHHHHHHHHC---------------CHHHHHHHHHHHHHHS
T ss_pred             ccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccc----cccCc-HHHHHHHHHHHHHHHH
Confidence            33333        23344566788999999999999999999999976544321    11111 1111111111121111


Q ss_pred             HHHHHHHHHHHhCCCCCCChhhhh-hhcCCCCCCCCh----HHHHHHHHHHHHHHHHHHHhH
Q psy9211         151 AKRMQENQARAAKDEPPLPEEDLN-KIFRPIPVPPRL----SPMLMAAQVSAYADHISQFSS  207 (226)
Q Consensus       151 ~kR~~EN~~R~~~ge~plpeed~~-~~fK~~~~PsrL----~~lL~s~qi~~~c~~i~~~~~  207 (226)
                      +.-  ++-.+.-.++..++++++. +......|+..|    +.|+.++-++.+|-.|+..+.
T Consensus       246 ~~~--~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~~~  305 (306)
T 4b4t_V          246 KIA--EQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSVAI  305 (306)
T ss_dssp             SCH--HHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            100  0000111111112334432 222334444444    778999999999999988753

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A

Probab=99.67  E-value=3e-17  Score=137.15  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEF   80 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~   80 (226)
                      |++++|+||.+.++||||||++.++.   .++..+..||..++++|+||+||.++.+| +.++|||+++.+.+       
T Consensus        79 m~~~~~~v~~~~~iVGWY~s~~~~s~---~d~~i~~~~~~~~~~~v~Livd~~~~~~~-l~i~ay~~~~~~~~-------  147 (187)
T 2o95_A           79 MYGMFKKVNARERIVGWYHTGPKLHK---NDIAINELMKRYCPNSVLVIIDVKPKDLG-LPTEAYISVEEVHD-------  147 (187)
T ss_dssp             HHHHHHTTSSSCEEEEEEECCSSCCT---THHHHHHHHTTTCTTCEEEEECCCTTC-C-CSEEEEEEEEECC--------
T ss_pred             HHHHHHHhCCCCCEEEEEcCCCcCCc---ccHHHHHHHHhcCCCCEEEEECCCCCCCC-cCeEEEEEechhcC-------
Confidence            67899999999999999999997755   34556667888889999999999988766 99999999876432       


Q ss_pred             CHHHHhhcCCCCCCceEEeeeEEeccHHHHHHHhccc
Q psy9211          81 TPEALRAIKVGFENLLLEVPVKIRNSPLTNVLLSEVD  117 (226)
Q Consensus        81 t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~~~L~~L~  117 (226)
                             .+.++.++|.|||++|.++.-+..-+.-+.
T Consensus       148 -------~~~~~~~~F~~ip~~I~~~eaE~i~v~~l~  177 (187)
T 2o95_A          148 -------DGTPTSKTFEHVTSEIGAEEAEEVGVEHLL  177 (187)
T ss_dssp             ----------CCEEEEEEEEEEECCCHHHHHHHHHHH
T ss_pred             -------CCCcccCEEEEeeEEEecCcHHHHHHHHHH
Confidence                   245678899999999999987666555543

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A

Probab=99.51  E-value=1.6e-14  Score=120.62  Aligned_cols=72  Identities=21%  Similarity=0.418  Sum_probs=63.9

Q ss_pred             hCCCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHHH---hhcCCCCHH
Q psy9211           8 VNVDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQM---YKEGEFTPE   83 (226)
Q Consensus         8 vn~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~---~ke~~~t~~   83 (226)
                      .+.|..+|||||||| .++|.|..+|++|.+||...+++|+||+||.++     .++||||++.-++.   ++++.|.+.
T Consensus        78 ~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~-----~~~afrl~~~g~~~~~~~~~~~f~p~  152 (178)
T 2znr_A           78 DQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK-----DTGIFRLTNAGMLEVSACKKKGFHPH  152 (178)
T ss_dssp             HHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT-----EEEEEEECHHHHHHHHHCCCCSSCCC
T ss_pred             HhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC-----cceEEEEECCcEeeecccCCCCcccC
Confidence            357889999999998 999999999999999999999999999999974     27999999988777   777778774


Q ss_pred             H
Q psy9211          84 A   84 (226)
Q Consensus        84 ~   84 (226)
                      .
T Consensus       153 ~  153 (178)
T 2znr_A          153 T  153 (178)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}

Probab=99.49  E-value=5e-15  Score=119.52  Aligned_cols=64  Identities=22%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEec
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRL   67 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRL   67 (226)
                      |++++|+||.|+++||||||++   .++..+++.+..|++.++++|+|++||.++.+|+|+++||+-
T Consensus        75 m~~~~k~v~~~e~iVGWY~s~~---~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~s  138 (141)
T 4e0q_A           75 KEQQYKQVFSDLDFIGWYTTGD---NPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFES  138 (141)
T ss_dssp             HHHHHHHHSTTCEEEEEEEEEC----------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC
T ss_pred             HHHHHHHhCCCccEEEEEeCCC---CCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEE
Confidence            7899999999999999999986   588899999999999999999999999999999999999974

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A

Probab=99.45  E-value=1.7e-13  Score=117.46  Aligned_cols=70  Identities=17%  Similarity=0.405  Sum_probs=62.6

Q ss_pred             CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCHHHHH---HhhcCCCCHHH
Q psy9211          10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQ---MYKEGEFTPEA   84 (226)
Q Consensus        10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~---~~ke~~~t~~~   84 (226)
                      .|..+|||||||+ .++|.|..+|.||.+||...+++|+||+||..+     +++||||+++-|+   .+++..|.+..
T Consensus       113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~-----~lgaFrLtp~G~~~~~~c~~~~fhph~  186 (211)
T 3rzv_A          113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ-----ETGFFKLTDHGLEEISSCRQKGFHPHS  186 (211)
T ss_dssp             HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT-----EEEEEEECHHHHHHHHHCCCCSSCCCC
T ss_pred             CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC-----eeeEEEeccchhhhhhccccCCcccCC
Confidence            5889999999998 999999999999999999999999999999843     7999999997776   77777787743

>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.2e-10  Score=105.78  Aligned_cols=92  Identities=18%  Similarity=0.264  Sum_probs=70.1

Q ss_pred             ChhHHhhhCCCCceeEEEEeecCCCccCHHHHHHHHHHhHhcC-CeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCC
Q psy9211           1 MMRRLRRVNVDHYHVGWYQSSDVANFISLPLIESQFHYQISIE-EAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGE   79 (226)
Q Consensus         1 Mm~~Lr~vn~D~~~VGwYqS~~~G~f~s~~~Ietq~~yQ~~~~-~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~   79 (226)
                      |++++++||.++.+||||++.   +-++..++..+-.|....+ ..|+|++|+. ...|.+.++||+..+...       
T Consensus        76 m~~~~kkV~~~e~iVGWY~tg---~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~-~~~~~lpi~aY~s~~~~~-------  144 (338)
T 4b4t_U           76 MNEMCKKINAKEKLIGWYHSG---PKLRASDLKINELFKKYTQNNPLLLIVDVK-QQGVGLPTDAYVAIEQVK-------  144 (338)
T ss_dssp             HHHHHHHHCCSCEEEEEEECC---SSCCSTHHHHHHHHGGGCCSCCCEEEECSC-CCSSSCSEEEEEEEEECS-------
T ss_pred             HHHHHhhcCccCCEEEEEecC---CCCCccHHHHHHHHHhccCCCcEEEEecCC-CCCCCcceEEEEeehhcc-------
Confidence            789999999999999999984   5577777887888888775 5677777775 557889999998655321       


Q ss_pred             CCHHHHhhcCCCCCCceEEeeeEEeccHHHH
Q psy9211          80 FTPEALRAIKVGFENLLLEVPVKIRNSPLTN  110 (226)
Q Consensus        80 ~t~~~l~~~~lt~~~i~~EiPI~i~ns~L~~  110 (226)
                             ..+-....+|.+||..|....-+.
T Consensus       145 -------~~~~~~~~~F~~lp~~i~~~eaE~  168 (338)
T 4b4t_U          145 -------DDGTSTEKTFLHLPCTIEAEEAEE  168 (338)
T ss_dssp             -------SCSTTCEEEEEEECEEECSCHHHH
T ss_pred             -------CCCcccccEEEEeeeEeecCcHHH
Confidence                   122334568999999998886544

>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}

Probab=98.30  E-value=5e-07  Score=72.80  Aligned_cols=51  Identities=24%  Similarity=0.208  Sum_probs=41.1

Q ss_pred             CCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCce-eeEEEEecCH
Q psy9211          11 DHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGF-LTLKAYRLTP   69 (226)
Q Consensus        11 D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~-lslkAfRLs~   69 (226)
                      +..+|||||||| .++|.|..|++++.     .++++.||+.+.   .|+ ..++|||+++
T Consensus        75 g~~ivG~yHSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~---~~~~~~~~af~~~~  127 (153)
T 2kcq_A           75 GLDVVGVYHSHPDHPARPSATDLEEAT-----FPGFTYVIVSVR---DGAPEALTAWALAP  127 (153)
T ss_dssp             TCEEEEEEEECSSSSSSCCHHHHHTCC-----CTTSEEEEEEEE---TTEEEEEEEEEECT
T ss_pred             CCeEEEEEeCCCCCCCCCCHHHHHhhh-----cCCCeEEEEECC---CCCccEEEEEEEeC
Confidence            468999999999 78999999997542     467888888654   466 5799999963

>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}

Probab=98.15  E-value=3.3e-06  Score=67.45  Aligned_cols=53  Identities=13%  Similarity=0.011  Sum_probs=41.8

Q ss_pred             CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEecCH
Q psy9211          10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRLTP   69 (226)
Q Consensus        10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRLs~   69 (226)
                      .+..+|||||||| .++|.|..|+.++.     .++.+.+|+.+..  .+...++|||+..
T Consensus        72 ~g~~ivG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~--~~~~~~~af~~~~  125 (146)
T 2kks_A           72 NGWVMLGNFHSHPATPARPSAEDKRLAF-----DPSLSYLIISLAE--PQKPVCKSFLIKK  125 (146)
T ss_dssp             HTCEEEEEEEEESSSCSSCCHHHHTTCC-----SSSCEEEEEECSC--SSSCEEEEEEECS
T ss_pred             CCCEEEEEEeCCCcCCCCCCHHHHHhhh-----cCCCeEEEEEccC--CCceEEEEEEEeC
Confidence            3457999999999 77999999998642     3678888887753  2468899999853

>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}

Probab=97.74  E-value=9.5e-05  Score=64.66  Aligned_cols=89  Identities=13%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             CCceeEEEEeecCC-CccCHHHHHHHHHHhHh-cCCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHHHHhhc
Q psy9211          11 DHYHVGWYQSSDVA-NFISLPLIESQFHYQIS-IEEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRAI   88 (226)
Q Consensus        11 D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~-~~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~~l~~~   88 (226)
                      |=..+||-|+++-. +|+++.++-|+.+||.. .+++|++|.-|.   .|..++.|||||++=++-.++++-...+.- .
T Consensus       109 dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft---pgs~sl~af~LT~~G~~Wg~~n~d~~~~~~-~  184 (254)
T 2og4_A          109 GLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST---PGSVSLSAYNLTDEGYQWGEENKDIMNVLS-E  184 (254)
T ss_dssp             TCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE---TTEEEEEEEEECHHHHHHHHTCCSCCSSCC-T
T ss_pred             CCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC---CCCceeEEEEcChhhhhhhhhcccccccCC-C
Confidence            44678999999955 99999999999999994 489999999665   899999999999998988877755422111 1


Q ss_pred             CCCCCCceEEeeeEEe
Q psy9211          89 KVGFENLLLEVPVKIR  104 (226)
Q Consensus        89 ~lt~~~i~~EiPI~i~  104 (226)
                      |-. .++++.+.+-+.
T Consensus       185 g~~-~~~~ek~qlllS  199 (254)
T 2og4_A          185 GFE-PTFSTHAQLLLS  199 (254)
T ss_dssp             TCC-GGGEEEEEEEEE
T ss_pred             CCC-ccccceeeEEee
Confidence            221 346777766543

>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A

Probab=97.72  E-value=0.00018  Score=63.56  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=68.1

Q ss_pred             CCCceeEEEEeecCC-CccCHHHHHHHHHHhHh---c--CCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHH
Q psy9211          10 VDHYHVGWYQSSDVA-NFISLPLIESQFHYQIS---I--EEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPE   83 (226)
Q Consensus        10 ~D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~---~--~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~   83 (226)
                      -|=..+||-|+++-. +|+++.+|-|+.+||..   .  +++|++|.-|.   .|..++.|||||++=++-.++++-...
T Consensus       107 ~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft---pgs~sl~af~LT~~G~~Wg~~n~d~~~  183 (273)
T 2p8r_A          107 RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT---PGSVSLTAYKLTPSGYEWGKANTDKGN  183 (273)
T ss_dssp             TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE---TTEEEEEEEEECHHHHHHHHHCCCCSS
T ss_pred             ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC---CCCceeEEEEcChHHhhhhhhcccccc
Confidence            455688999999955 99999999999999986   3  49999999664   899999999999988887776654432


Q ss_pred             HHhhcCCCCCCceEEeeeEEe
Q psy9211          84 ALRAIKVGFENLLLEVPVKIR  104 (226)
Q Consensus        84 ~l~~~~lt~~~i~~EiPI~i~  104 (226)
                      +  ..|. ..++++.+.+-+.
T Consensus       184 ~--~~Gf-~p~~~ek~qllLS  201 (273)
T 2p8r_A          184 N--PKGY-MPTHYEKVQMLLS  201 (273)
T ss_dssp             C--CTTC-CGGGEEEEEEEEE
T ss_pred             C--CCCC-Ccchhhheeeeee
Confidence            3  2333 2357777776553

>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A

Probab=97.31  E-value=0.00052  Score=53.01  Aligned_cols=50  Identities=12%  Similarity=-0.154  Sum_probs=39.2

Q ss_pred             CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEec
Q psy9211          10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRL   67 (226)
Q Consensus        10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRL   67 (226)
                      .+..+|||||||| .++|.|..++.++.     ....+.+|+.+..   +.-+++||+.
T Consensus        61 ~~~~ivG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~---~~~~~~~f~~  111 (124)
T 1oi0_A           61 IGMKVFGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY---DENSWKCYNR  111 (124)
T ss_dssp             CCCEEEEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC---CTTCEEEEET
T ss_pred             CCCEEEEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC---CCceEEEEec
Confidence            4678999999999 77999999998754     3667888887642   3457888886

>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.062  Score=51.18  Aligned_cols=90  Identities=13%  Similarity=0.191  Sum_probs=64.3

Q ss_pred             CCCceeEEEEeecCC-CccCHHHHHHHHHHhHhc-CCeEEEEEeCCccCCceeeEEEEecCHHHHHHhhcCCCCHHHHhh
Q psy9211          10 VDHYHVGWYQSSDVA-NFISLPLIESQFHYQISI-EEAVVLIYDTQKTSRGFLTLKAYRLTPQAIQMYKEGEFTPEALRA   87 (226)
Q Consensus        10 ~D~~~VGwYqS~~~G-~f~s~~~Ietq~~yQ~~~-~~~V~lV~Dp~~s~~G~lslkAfRLs~~~~~~~ke~~~t~~~l~~   87 (226)
                      -|=...||-|+++-. +|+++.++-|+...-..+ +++|+++.-   .+.|.++|.||+||++=.+-.++++-..... -
T Consensus       419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvs---ftPGS~SLsAy~LT~eGyeWG~~N~d~~~~~-p  494 (565)
T 3sbg_A          419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIF---STPGSVSLSAYNLTDEGYQWGEENKDIMNVL-S  494 (565)
T ss_dssp             TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEE---EETTEEEEEEEEECHHHHHHHHTTTTCCSSC-C
T ss_pred             ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEE---ecCCceEEEEEecCHhHHHHHhhcccccccC-C
Confidence            455789999999944 999999999999875554 477777663   3489999999999999988888765432100 1


Q ss_pred             cCCCCCCceEEeeeEEe
Q psy9211          88 IKVGFENLLLEVPVKIR  104 (226)
Q Consensus        88 ~~lt~~~i~~EiPI~i~  104 (226)
                      .|.. .++++.+.+-+.
T Consensus       495 ~g~~-~~~~~~~q~llS  510 (565)
T 3sbg_A          495 EGFE-PTFSTHAQLLLS  510 (565)
T ss_dssp             TTCC-GGGEEECEEEEE
T ss_pred             CCCC-ccccceeEEEEe
Confidence            1222 256777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1oi0a_	121	Hypothetical protein AF2198 {Archaeon Archaeoglobu	96.06

>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.06  E-value=0.0065  Score=45.17  Aligned_cols=50  Identities=12%  Similarity=-0.152  Sum_probs=37.1

Q ss_pred             CCCceeEEEEeec-CCCccCHHHHHHHHHHhHhcCCeEEEEEeCCccCCceeeEEEEec
Q psy9211          10 VDHYHVGWYQSSD-VANFISLPLIESQFHYQISIEEAVVLIYDTQKTSRGFLTLKAYRL   67 (226)
Q Consensus        10 ~D~~~VGwYqS~~-~G~f~s~~~Ietq~~yQ~~~~~~V~lV~Dp~~s~~G~lslkAfRL   67 (226)
                      .+..+|||||||| -.++-|..|+.+..     ....+-+|+-+-   .+.-.+|||+.
T Consensus        61 ~~~~ivgi~HSHP~~~a~PS~~D~~~~~-----~~g~~~~Ivs~p---~~~~~~~~~~~  111 (121)
T d1oi0a_          61 IGMKVFGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYP---YDENSWKCYNR  111 (121)
T ss_dssp             CCCEEEEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETT---CCTTCEEEEET
T ss_pred             cCCeEEEEEEecCCCCCCcCHHHHHhhh-----ccCCEEEEEeCC---CCCCCEEEEeC
Confidence            3567999999999 55999999998764     255677887764   22235889974