Psyllid ID: psy9217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDEGCYEDSETLSRGKHK
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEHHHHHHHHHHHHcccccccccEEcEEEEEEEEccEEEEEEcccccccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccEEEEHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccEEEEEccccccccccccccHHHHccHHHHHccccc
Coil and Loop (DISEMBL)
matsrvsrvqidespisyvqmDGLAVMKIVKHCHEESTNNIEVAQGALLGLVvdnrleitncfpfpknydesvdegcyedsetlsrgkhk
Flexible Loop (DISEMBL)
matsrvsrvqidespisyvqMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFpfpknydesvdegcyedsetlsrgkhk
Low Complexity Region (SEG)
MATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDEGCYEDSETLSRGKHK
Disordered region (IsUnstruct)
**************PISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDE*******************
Disordered Region (DISOPRED)
***************ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPK***********************
Disordered Region (DISEMBL)
*********QIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDE***************
Disordered Region (DISPRO)
*************SPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKN**********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDEGCYEDSETLSRGKHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q170C2	336	Eukaryotic translation in	N/A	N/A	0.855	0.229	0.679	1e-24
B0WDA9	336	Eukaryotic translation in	N/A	N/A	0.711	0.190	0.781	2e-24
Q7PVR3	334	Eukaryotic translation in	yes	N/A	0.8	0.215	0.726	2e-24
Q9GV27	337	Eukaryotic translation in	N/A	N/A	0.788	0.210	0.722	8e-24
B4N116	337	Eukaryotic translation in	N/A	N/A	0.822	0.219	0.68	6e-23
B4LTW0	337	Eukaryotic translation in	N/A	N/A	0.833	0.222	0.644	3e-22
B4JAS7	337	Eukaryotic translation in	N/A	N/A	0.833	0.222	0.644	4e-22
B3N4F1	338	Eukaryotic translation in	N/A	N/A	0.855	0.227	0.628	4e-22
B4P3T9	338	Eukaryotic translation in	N/A	N/A	0.855	0.227	0.628	4e-22
B4I1C2	338	Eukaryotic translation in	N/A	N/A	0.855	0.227	0.628	4e-22

>sp|Q170C2|EIF3H_AEDAE Eukaryotic translation initiation factor 3 subunit H OS=Aedes aegypti GN=AAEL007945 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 65/78 (83%), Gaps = 1/78 (1%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          A +R    ++D + ISYVQ DGLA MK+VKHCHEES +N+EVAQGALLGLVVD+RLEITN
Sbjct: 5  AQNRRPAQEVDNT-ISYVQCDGLAAMKMVKHCHEESRSNMEVAQGALLGLVVDDRLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK+ DE++DE  Y+
Sbjct: 64 CFPFPKSSDETIDEEEYQ 81

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Aedes aegypti (taxid: 7159)

>sp|B0WDA9|EIF3H_CULQU Eukaryotic translation initiation factor 3 subunit H OS=Culex quinquefasciatus GN=CPIJ005299 PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 58/64 (90%)

Query: 16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDE 75
          ISYVQ DGLA MK+VKHCHEES +N+EVAQGALLGLVVD+RLEITNCFPFPK+ DE++DE
Sbjct: 18 ISYVQCDGLAAMKMVKHCHEESLSNMEVAQGALLGLVVDDRLEITNCFPFPKSSDETIDE 77

Query: 76 GCYE 79
            Y+
Sbjct: 78 EEYQ 81

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|Q7PVR3|EIF3H_ANOGA Eukaryotic translation initiation factor 3 subunit H OS=Anopheles gambiae GN=AGAP009204 PE=3 SV=3

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 63/73 (86%), Gaps = 1/73 (1%)

Query: 7  SRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          +R Q  ++ ISYVQ DGLA MK+VKHCHEES NN+EVAQGALLGLVVD+RLEITNCFPFP
Sbjct: 8  ARSQPVDNTISYVQCDGLAAMKMVKHCHEESLNNMEVAQGALLGLVVDDRLEITNCFPFP 67

Query: 67 KNYDESVDEGCYE 79
          K+ DE++DE  Y+
Sbjct: 68 KS-DETIDEEEYQ 79

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Anopheles gambiae (taxid: 7165)

>sp|Q9GV27|EIF3H_BOMMO Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 62/72 (86%), Gaps = 1/72 (1%)

Query: 8  RVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPK 67
          R   +E+ I YVQ DGLAVMKIVKHCHEES +N+EVAQGALLGLVV+NRLEITNCFPFPK
Sbjct: 10 RAPENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK 69

Query: 68 NYDESVDEGCYE 79
           +D+++DE  Y+
Sbjct: 70 -HDDTMDEEEYQ 80

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|B4N116|EIF3H_DROWI Eukaryotic translation initiation factor 3 subunit H OS=Drosophila willistoni GN=eIF-3p40 PE=3 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 63/75 (84%), Gaps = 1/75 (1%)

Query: 5  RVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFP 64
          R +R +  E+ I+YVQ DGLAVMK+VKHCHEES NN+++AQGALLGLVVD  LEITNCFP
Sbjct: 7  RHARTEETENAINYVQCDGLAVMKMVKHCHEES-NNMDLAQGALLGLVVDKCLEITNCFP 65

Query: 65 FPKNYDESVDEGCYE 79
          FPK+ DE++DE  Y+
Sbjct: 66 FPKSGDETMDEEMYQ 80

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila willistoni (taxid: 7260)

>sp|B4LTW0|EIF3H_DROVI Eukaryotic translation initiation factor 3 subunit H OS=Drosophila virilis GN=eIF-3p40 PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 4  SRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCF 63
          +R +R +  ++ I+YVQ DGLAVMK+VKHCHEES+N +++AQGALLGLVVD  LEITNCF
Sbjct: 6  ARHARTEDSDNTINYVQCDGLAVMKMVKHCHEESSN-MDLAQGALLGLVVDKCLEITNCF 64

Query: 64 PFPKNYDESVDEGCYE 79
          PFPK+ DE++DE  Y+
Sbjct: 65 PFPKSGDETMDEEMYQ 80

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila virilis (taxid: 7244)

>sp|B4JAS7|EIF3H_DROGR Eukaryotic translation initiation factor 3 subunit H OS=Drosophila grimshawi GN=eIF-3p40 PE=3 SV=1

 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 4  SRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCF 63
          +R +R +  E+ I+YVQ DGLAVMK+VKHCHEES+N +++AQGALLGLVVD  LEITNCF
Sbjct: 6  ARHARTEDTENTINYVQCDGLAVMKMVKHCHEESSN-MDLAQGALLGLVVDKCLEITNCF 64

Query: 64 PFPKNYDESVDEGCYE 79
          PFPK+ DE++D+  Y+
Sbjct: 65 PFPKSGDETMDDETYQ 80

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

>sp|B3N4F1|EIF3H_DROER Eukaryotic translation initiation factor 3 subunit H OS=Drosophila erecta GN=eIF-3p40 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          A    +R +  ++ I+YVQ DGLAVMK+VKHCHEES+N +++AQGALLGLVVD  LEITN
Sbjct: 5  ANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSN-MDLAQGALLGLVVDKCLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK+ DE++DE  Y+
Sbjct: 64 CFPFPKSGDETMDEELYQ 81

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

>sp|B4P3T9|EIF3H_DROYA Eukaryotic translation initiation factor 3 subunit H OS=Drosophila yakuba GN=eIF-3p40 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          A    +R +  ++ I+YVQ DGLAVMK+VKHCHEES+N +++AQGALLGLVVD  LEITN
Sbjct: 5  ANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSN-MDLAQGALLGLVVDKCLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK+ DE++DE  Y+
Sbjct: 64 CFPFPKSGDETMDEEMYQ 81

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila yakuba (taxid: 7245)

>sp|B4I1C2|EIF3H_DROSE Eukaryotic translation initiation factor 3 subunit H OS=Drosophila sechellia GN=eIF-3p40 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          A    +R +  ++ I+YVQ DGLAVMK+VKHCHEES+N +++AQGALLGLVVD  LEITN
Sbjct: 5  ANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSN-MDLAQGALLGLVVDKCLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK+ DE++DE  Y+
Sbjct: 64 CFPFPKSGDETMDEEMYQ 81

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
91083005	338	PREDICTED: similar to EN10 [Tribolium ca	0.844	0.224	0.717	7e-25
332373114	338	unknown [Dendroctonus ponderosae]	0.711	0.189	0.796	4e-24
242021197	344	eukaryotic translation initiation factor	0.744	0.194	0.75	1e-23
389615175	340	eukaryotic initiation factor 3 p40 subun	0.833	0.220	0.717	4e-23
157117421	336	eukaryotic translation initiation factor	0.855	0.229	0.679	5e-23
170037668	336	eukaryotic translation initiation factor	0.711	0.190	0.781	7e-23
118791842	334	AGAP009204-PA [Anopheles gambiae str. PE	0.8	0.215	0.726	8e-23
357613911	337	eukaryotic translation initiation factor	0.788	0.210	0.736	1e-22
358443168	244	control protein HCTL035 [Heliconius erat	0.744	0.274	0.75	2e-22
322785342	336	hypothetical protein SINV_05727 [Solenop	0.833	0.223	0.717	2e-22

>gi|91083005|ref|XP_974497.1| PREDICTED: similar to EN10 [Tribolium castaneum] gi|270007645|gb|EFA04093.1| hypothetical protein TcasGA2_TC014327 [Tribolium castaneum]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 66/78 (84%), Gaps = 2/78 (2%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          A SR  RV  ++S I+YVQ DGLAVMKIVKHCHEEST N+++AQGALLGLVV+NRLEITN
Sbjct: 6  AASR--RVPENDSTIAYVQADGLAVMKIVKHCHEESTTNMDIAQGALLGLVVENRLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK  DE++DE  Y+
Sbjct: 64 CFPFPKQTDETMDEDEYQ 81

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373114|gb|AEE61698.1| unknown [Dendroctonus ponderosae]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 58/64 (90%)

Query: 16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDE 75
          I+YVQ DGLAVMKIVKHCHEEST N+++AQGALLGLVVDNRLEITNCFPFPK  DE++DE
Sbjct: 18 INYVQADGLAVMKIVKHCHEESTTNMDIAQGALLGLVVDNRLEITNCFPFPKQSDETMDE 77

Query: 76 GCYE 79
            Y+
Sbjct: 78 EEYQ 81

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021197|ref|XP_002431032.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis] gi|212516261|gb|EEB18294.1| eukaryotic translation initiation factor 3 subunit, putative [Pediculus humanus corporis]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 61/68 (89%), Gaps = 1/68 (1%)

Query: 12 DESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDE 71
          ++SPI YVQMDGLAVMK+VKHCHEES+ N E+AQGALLGLVV+ RLEITNCFPFPK +D+
Sbjct: 8  NDSPIDYVQMDGLAVMKMVKHCHEESSGNFEIAQGALLGLVVETRLEITNCFPFPK-HDD 66

Query: 72 SVDEGCYE 79
          S+DE  Y+
Sbjct: 67 SIDEEQYQ 74

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389615175|dbj|BAM20575.1| eukaryotic initiation factor 3 p40 subunit, partial [Papilio polytes]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 67/78 (85%), Gaps = 3/78 (3%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
           TSR  RV  +E+ I+YVQ DGLAVMKIVKHCHEES +N+EVAQGALLGLVV+NRLEITN
Sbjct: 6  GTSR--RVPENEAAITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK +D+++DE  Y+
Sbjct: 64 CFPFPK-HDDTMDEEEYQ 80

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117421|ref|XP_001658759.1| eukaryotic translation initiation factor 3 subunit [Aedes aegypti] gi|122068120|sp|Q170C2.1|EIF3H_AEDAE RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h gi|108876087|gb|EAT40312.1| AAEL007945-PA [Aedes aegypti]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 65/78 (83%), Gaps = 1/78 (1%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          A +R    ++D + ISYVQ DGLA MK+VKHCHEES +N+EVAQGALLGLVVD+RLEITN
Sbjct: 5  AQNRRPAQEVDNT-ISYVQCDGLAAMKMVKHCHEESRSNMEVAQGALLGLVVDDRLEITN 63

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPK+ DE++DE  Y+
Sbjct: 64 CFPFPKSSDETIDEEEYQ 81

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037668|ref|XP_001846678.1| eukaryotic translation initiation factor 3 subunit [Culex quinquefasciatus] gi|224488032|sp|B0WDA9.1|EIF3H_CULQU RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h gi|167880962|gb|EDS44345.1| eukaryotic translation initiation factor 3 subunit [Culex quinquefasciatus]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 58/64 (90%)

Query: 16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDE 75
          ISYVQ DGLA MK+VKHCHEES +N+EVAQGALLGLVVD+RLEITNCFPFPK+ DE++DE
Sbjct: 18 ISYVQCDGLAAMKMVKHCHEESLSNMEVAQGALLGLVVDDRLEITNCFPFPKSSDETIDE 77

Query: 76 GCYE 79
            Y+
Sbjct: 78 EEYQ 81

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118791842|ref|XP_319981.3| AGAP009204-PA [Anopheles gambiae str. PEST] gi|224488079|sp|Q7PVR3.3|EIF3H_ANOGA RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h gi|116117794|gb|EAA14719.3| AGAP009204-PA [Anopheles gambiae str. PEST]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 63/73 (86%), Gaps = 1/73 (1%)

Query: 7  SRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          +R Q  ++ ISYVQ DGLA MK+VKHCHEES NN+EVAQGALLGLVVD+RLEITNCFPFP
Sbjct: 8  ARSQPVDNTISYVQCDGLAAMKMVKHCHEESLNNMEVAQGALLGLVVDDRLEITNCFPFP 67

Query: 67 KNYDESVDEGCYE 79
          K+ DE++DE  Y+
Sbjct: 68 KS-DETIDEEEYQ 79

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613911|gb|EHJ68783.1| eukaryotic translation initiation factor 3 subunit H [Danaus plexippus]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 63/72 (87%), Gaps = 1/72 (1%)

Query: 8  RVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPK 67
          RV  +E  I+YVQ DGLAVMKIVKHCHEES +N+EVAQGALLGLVV+NRLEITNCFPFPK
Sbjct: 10 RVPENEDAITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK 69

Query: 68 NYDESVDEGCYE 79
           +D+++DE  Y+
Sbjct: 70 -HDDTMDEEEYQ 80

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358443168|gb|AEU11830.1| control protein HCTL035 [Heliconius erato]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 62/68 (91%), Gaps = 1/68 (1%)

Query: 12 DESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDE 71
          +E+ I+YVQ DGLAVMKIVKHCHEES +N+EVAQGALLGLVV+NRLEITNCFPFPK +D+
Sbjct: 2  NEAAITYVQCDGLAVMKIVKHCHEESYSNMEVAQGALLGLVVENRLEITNCFPFPK-HDD 60

Query: 72 SVDEGCYE 79
          ++DE  Y+
Sbjct: 61 TMDEQEYQ 68

Source: Heliconius erato

Species: Heliconius erato

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785342|gb|EFZ12016.1| hypothetical protein SINV_05727 [Solenopsis invicta]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 3/78 (3%)

Query: 2  ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
          ATSR  R+   E  I YVQ DGL VMK+VKHCHEES++N+EVAQGALLGLVV NRLEITN
Sbjct: 5  ATSR--RIPEAEPRIDYVQCDGLVVMKMVKHCHEESSSNMEVAQGALLGLVVQNRLEITN 62

Query: 62 CFPFPKNYDESVDEGCYE 79
          CFPFPKN DE +DE  Y+
Sbjct: 63 CFPFPKN-DEIMDEEEYQ 79

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
FB|FBgn0022023	338	eIF-3p40 "Eukaryotic initiatio	0.855	0.227	0.628	7e-22
UNIPROTKB|Q5PPY6	334	eif3h "Eukaryotic translation	0.7	0.188	0.593	3.3e-15
UNIPROTKB|Q5ZLE6	348	EIF3H "Eukaryotic translation	0.677	0.175	0.596	4e-15
UNIPROTKB|B5FY35	348	EIF3H "Eukaryotic translation	0.677	0.175	0.596	4e-15
UNIPROTKB|Q6P381	335	eif3h "Eukaryotic translation	0.7	0.188	0.562	7.4e-15
ZFIN|ZDB-GENE-040808-19	335	eif3ha "eukaryotic translation	0.711	0.191	0.552	2.1e-14
UNIPROTKB|B5RI54	344	eif3h "Eukaryotic translation	0.677	0.177	0.532	3.9e-14
ZFIN|ZDB-GENE-051030-42	333	eif3hb "eukaryotic translation	0.677	0.183	0.532	4.5e-14
UNIPROTKB|Q56JZ5	352	EIF3H "Eukaryotic translation	0.677	0.173	0.564	5.6e-14
UNIPROTKB|O15372	352	EIF3H "Eukaryotic translation	0.677	0.173	0.564	5.6e-14

FB|FBgn0022023 eIF-3p40 "Eukaryotic initiation factor 3 p40 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 49/78 (62%), Positives = 63/78 (80%)

Query:     2 ATSRVSRVQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
             A    +R +  ++ I+YVQ DGLAVMK+VKHCHEES+N +++AQGALLGLVVD  LEITN
Sbjct:     5 ANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSN-MDLAQGALLGLVVDKCLEITN 63

Query:    62 CFPFPKNYDESVDEGCYE 79
             CFPFPK+ DE++DE  Y+
Sbjct:    64 CFPFPKSGDETMDEEMYQ 81

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5PPY6 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus laevis (taxid:8355)]

 Score = 195 (73.7 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/64 (59%), Positives = 49/64 (76%)

Query:    11 IDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYD 70
             I E+ +  VQ+DGL V+KI+KH  EE   + EV QG LLGLVVD+RLEITNCFPFP++ +
Sbjct:    13 IAETAVKQVQIDGLVVLKIIKHYQEEGHGS-EVVQGVLLGLVVDDRLEITNCFPFPQHTE 71

Query:    71 ESVD 74
             + VD
Sbjct:    72 DDVD 75

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q5ZLE6 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query:    13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES 72
             +S +  VQ+DGL V+KI+KH  EE   N EV QG LLGLVVD+RLEITNCFPFP++ ++ 
Sbjct:    29 DSAVKQVQIDGLVVLKIIKHYQEEGQGN-EVVQGVLLGLVVDDRLEITNCFPFPQHTEDD 87

Query:    73 VD 74
              D
Sbjct:    88 AD 89

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|B5FY35 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Taeniopygia guttata (taxid:59729)]

 Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query:    13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES 72
             +S +  VQ+DGL V+KI+KH  EE   N EV QG LLGLVVD+RLEITNCFPFP++ ++ 
Sbjct:    29 DSAVKQVQIDGLVVLKIIKHYQEEGQGN-EVVQGVLLGLVVDDRLEITNCFPFPQHTEDD 87

Query:    73 VD 74
              D
Sbjct:    88 AD 89

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q6P381 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 192 (72.6 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 36/64 (56%), Positives = 49/64 (76%)

Query:    11 IDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYD 70
             + E+ +  VQ+DG+ V+KI+KH  EE   + EV QG LLGLVVD+RLEITNCFPFP++ +
Sbjct:    14 VAETAVKQVQIDGMVVLKIIKHYQEEGHGS-EVVQGVLLGLVVDDRLEITNCFPFPQHTE 72

Query:    71 ESVD 74
             + VD
Sbjct:    73 DDVD 76

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-040808-19 eif3ha "eukaryotic translation initiation factor 3, subunit H, a" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 37/67 (55%), Positives = 50/67 (74%)

Query:    15 PISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESV- 73
             P+  +Q+DGL V+KI+KH  EE   + EV QG LLGLVV++RLEITNCFPFP++ ++ V 
Sbjct:    18 PVKQIQVDGLVVLKIIKHYQEEGQGS-EVVQGVLLGLVVEDRLEITNCFPFPQHTEDDVE 76

Query:    74 -DEGCYE 79
              DE  Y+
Sbjct:    77 FDEVQYQ 83

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0048882 "lateral line development" evidence=IMP

GO:0001944 "vasculature development" evidence=IMP

UNIPROTKB|B5RI54 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Salmo salar (taxid:8030)]

 Score = 186 (70.5 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 33/62 (53%), Positives = 48/62 (77%)

Query:    13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES 72
             +SP+  +Q++GL V+K++KH  EE   + EV QG LLGLVV++RLEITNCFPFP++ ++ 
Sbjct:    25 DSPVKQIQIEGLVVLKMIKHYQEEGQGS-EVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 83

Query:    73 VD 74
              D
Sbjct:    84 AD 85

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-051030-42 eif3hb "eukaryotic translation initiation factor 3, subunit H, b" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 33/62 (53%), Positives = 48/62 (77%)

Query:    13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES 72
             ++P+  +Q++GL VMKI+KH  EE   + EV QG LLGLVV+++LEITNCFPFP++ ++ 
Sbjct:    14 DTPVKQIQIEGLVVMKIIKHYQEEGQGS-EVVQGVLLGLVVEDQLEITNCFPFPQHTEDD 72

Query:    73 VD 74
              D
Sbjct:    73 AD 74

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

UNIPROTKB|Q56JZ5 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query:    13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES 72
             +S +  VQ+DGL V+KI+KH  EE     EV QG LLGLVV++RLEITNCFPFP++ ++ 
Sbjct:    33 DSAVKQVQIDGLVVLKIIKHYQEEGQGT-EVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91

Query:    73 VD 74
              D
Sbjct:    92 AD 93

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|O15372 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query:    13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES 72
             +S +  VQ+DGL V+KI+KH  EE     EV QG LLGLVV++RLEITNCFPFP++ ++ 
Sbjct:    33 DSAVKQVQIDGLVVLKIIKHYQEEGQGT-EVVQGVLLGLVVEDRLEITNCFPFPQHTEDD 91

Query:    73 VD 74
              D
Sbjct:    92 AD 93

GO:0005515 "protein binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P381	EIF3H_XENTR	No assigned EC number	0.5625	0.7	0.1880	yes	N/A
Q7PVR3	EIF3H_ANOGA	No assigned EC number	0.7260	0.8	0.2155	yes	N/A
B5FY35	EIF3H_TAEGU	No assigned EC number	0.5967	0.6777	0.1752	yes	N/A
Q5ZLE6	EIF3H_CHICK	No assigned EC number	0.5967	0.6777	0.1752	yes	N/A
Q9U9Q4	EIF3H_DROME	No assigned EC number	0.6282	0.8555	0.2278	yes	N/A
O15372	EIF3H_HUMAN	No assigned EC number	0.5645	0.6777	0.1732	yes	N/A
Q56JZ5	EIF3H_BOVIN	No assigned EC number	0.5645	0.6777	0.1732	yes	N/A
Q6AXJ2	EI3HA_DANRE	No assigned EC number	0.5666	0.6555	0.1761	yes	N/A
B5DJJ2	EIF3H_DROPS	No assigned EC number	0.6533	0.8222	0.2195	yes	N/A
Q91WK2	EIF3H_MOUSE	No assigned EC number	0.5645	0.6777	0.1732	yes	N/A
Q6P9U8	EIF3H_RAT	No assigned EC number	0.5645	0.6777	0.1732	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
cd08065	266	cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN)	1e-24
pfam01398	117	pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro	4e-07
cd08057	157	cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (	6e-07
smart00232	135	smart00232, JAB_MPN, JAB/MPN domain	3e-06
cd08064	265	cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN)	1e-04
cd08069	268	cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p	1e-04

>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

 Score = 92.3 bits (230), Expect = 1e-24
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDE 75
           VQ+DGL V+KI+KHC EE     E+ QG LLGL V   LE+TNCFPFPK+ ++  D 
Sbjct: 2  SVQIDGLVVLKIIKHCKEELP---ELVQGQLLGLDVGGTLEVTNCFPFPKSEEDDSDR 56

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, differentiation, and apoptosis, and EIF3h in patients with non-small cell lung cancer (NSCLC) improves survival if treated with the Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor (EGFR-TKI), Gefitinib. Plant eIF3h is implicated in translation of specific mRNAs. Length = 266

>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNR-LEITNCFPFPKNYDE 71
          V +  L ++KIV H      +  EV  G LLG +  +R +E+TN F  P++  E
Sbjct: 5  VVIHPLVLLKIVDHARRGGKSGEEVM-GVLLGTLEGDRVIEVTNSFALPQSETE 57

Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain and PAD-1-like domain, JABP1 domain or JAMM domain. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signaling and protein turnover pathways in eukaryotes. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are predicted to have a similar role. Length = 117

>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDEGCY 78
          VQ+  L ++ I  H +      I+   G LLG V  +++E+TN F  P  +DE  +E  +
Sbjct: 1  VQLHPLVLLNISDH-YTRRKYGIKRVIGVLLGYVDGDKIEVTNSFELP--FDEE-EESIF 56

Query: 79 EDSETLSR 86
           D+E L +
Sbjct: 57 IDTEYLEK 64

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. It cleaves ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. EIF3f s a potent inhibitor of HIV-1 replication as well as an important negative regulator of cell growth and proliferation. EIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. Length = 157

>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain

 Score = 42.0 bits (99), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPK-NYDESVDE 75
           V++  L  + I+KH         EV  G LLG    +R E+   F  P    D+SV E
Sbjct: 1  EVKVHPLVPLNILKHA--IRDGPEEVC-GVLLGKSNKDRPEVKEVFAVPNEPQDDSVQE 56

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function. Length = 135

>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 24 LAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDE 75
          + +  I+   +E      E   G LLG   +  +EITNCF  P N  ES D+
Sbjct: 6  VVLFSILDS-YERRNEGQERVIGTLLGTRSEGEVEITNCFAVPHN--ESEDQ 54

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and apoptosis. It enhances its association with the core eIF3 subunits during apoptosis, suggesting that eIF3f may inhibit translation by increasing the binding to the eIF3 complex during apoptosis. Thus, eIF3f may be an important negative regulator of cell growth and proliferation. Length = 265

>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          V +  LA++K++KH    +   IEV  G +LG V D  + + + F  P
Sbjct: 12 VYISSLALLKMLKHA--RAGGPIEV-MGLMLGKVDDYTIIVVDVFALP 56

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
KOG1560|consensus	339		99.86
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	99.78
PLN03246	303	26S proteasome regulatory subunit; Provisional	99.73
cd08057	157	MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai	99.69
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	99.68
cd08062	280	MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w	99.67
PF01398	114	JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte	99.65
KOG2975|consensus	288		99.64
cd08063	288	MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit	99.57
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	99.5
KOG1556|consensus	309		99.12
smart00232	135	JAB_MPN JAB/MPN domain. Domain in Jun kinase activ	99.07
cd08067	187	MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu	99.04
KOG1554|consensus	347		98.94
cd08058	119	MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w	98.82
cd07767	116	MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al	98.63
KOG3050|consensus	299		97.81
cd08060	182	MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family	97.59
cd08068	244	MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun	97.37
PF03665	196	UPF0172: Uncharacterised protein family (UPF0172);	97.24
cd08070	128	MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit	96.62
cd08066	173	MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ	96.58
KOG3289|consensus	199		96.43
cd08072	117	MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1	94.82
PF14464	104	Prok-JAB: Prokaryotic homologs of the JAB domain;	92.65
TIGR02256	131	ICE_VC0181 integrative and conjugative element pro	90.87
KOG1555|consensus	316		88.81
COG1310	134	Predicted metal-dependent protease of the PAD1/JAB	80.07

>KOG1560|consensus

Probab=99.86  E-value=1.8e-22  Score=158.55  Aligned_cols=78  Identities=50%  Similarity=0.856  Sum_probs=66.6

Q ss_pred             ccCCCCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC--CC------Ccccc--cch
Q psy9217          10 QIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY--DE------SVDEG--CYE   79 (90)
Q Consensus        10 ~~~~~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~--de------~~~~~--~Yq   79 (90)
                      ...+++|+.|+||+||+|||||||++++ ++...++|+|||++.|++||||||||||...  ||      .++++  +||
T Consensus         6 ~~~~p~vk~v~ldsLvVMkiiKHc~ee~-~n~d~~~GvL~Glvvd~~LeITncFp~p~~~~~edda~~~~~~de~rq~~~   84 (339)
T KOG1560|consen    6 ELESPPVKRVELDSLVVMKIIKHCREEF-PNGDGTQGVLLGLVVDGRLEITNCFPFPSVLENEDDAVNKSVSDEARQAYQ   84 (339)
T ss_pred             CCCCCccceeeehhHHHHHHHHHHHhhc-CCcchhhheeeeeeecceeEeecccCCCccCCCccchhhhhhhHHHHHHHH
Confidence            3456789999999999999999999999 5567899999999999999999999999865  33      24554  788


Q ss_pred             hhhhhhcccC
Q psy9217          80 DSETLSRGKH   89 (90)
Q Consensus        80 ~~~~l~~~~~   89 (90)
                      ++ ++++.|+
T Consensus        85 l~-mlrrlr~   93 (339)
T KOG1560|consen   85 LA-MLRRLRY   93 (339)
T ss_pred             HH-HHHHhhh
Confidence            88 9999885

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=99.78  E-value=1.8e-19  Score=136.98  Aligned_cols=68  Identities=49%  Similarity=0.804  Sum_probs=57.0

Q ss_pred             eeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCCCCC-----cccccchhhhhhhccc
Q psy9217          17 SYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES-----VDEGCYEDSETLSRGK   88 (90)
Q Consensus        17 ~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~de~-----~~~~~Yq~~~~l~~~~   88 (90)
                      ++|+|+++|++||+|||++++   |.+|+|+|||++.++++|||||||||+.++++     .+..+||.+ |++..|
T Consensus         1 ~~V~I~~~vllkIv~H~~~~~---p~~v~G~LLG~~~~~~leVtn~Fp~P~~~~~~~~~~~~~~~~yq~~-m~~~~r   73 (266)
T cd08065           1 TSVQIDGLVVLKIIKHCKEEL---PELVQGQLLGLDVGGTLEVTNCFPFPKSEEDDSDRADEDIADYQLE-MMRLLR   73 (266)
T ss_pred             CEEEEeHHHHHHHHHHHhcCC---CcEEEEEEeeeEcCCEEEEEeccCCCCCCCCCcchhhhhHHHHHHH-HHHHHH
Confidence            479999999999999999999   78999999999999999999999999987332     233577776 555544

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>PLN03246 26S proteasome regulatory subunit; Provisional

Probab=99.73  E-value=5.2e-18  Score=132.31  Aligned_cols=57  Identities=26%  Similarity=0.412  Sum_probs=51.6

Q ss_pred             CCCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        13 ~~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      ..|+.+|+|||+|+|+|++||.|+.+..+.+|+|+|||++.++.|||||||++|+.+
T Consensus         2 ~~~~~~V~vhPlVll~I~dh~~R~~~~~~~rviG~LLG~~~~~~ieItnsF~~p~~e   58 (303)
T PLN03246          2 PRGIEKVVVHPLVLLSIVDHYNRVAKDTRKRVVGVLLGSSFRGRVDVTNSFAVPFEE   58 (303)
T ss_pred             CCCCcEEEECcHHHHHHHHHHHhccCCCCCeeEEEEEeeecCCEEEEEeccccCccc
Confidence            468899999999999999999999843357899999999999999999999999965

>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

Probab=99.69  E-value=2.1e-17  Score=116.19  Aligned_cols=50  Identities=32%  Similarity=0.549  Sum_probs=46.4

Q ss_pred             EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      |+|||+|+|||++||.++. .++.+++|+|||...++.+|||||||+|+.+
T Consensus         1 V~ihplvll~I~dh~~R~~-~~~~~v~G~LlG~~~~~~veV~nsF~lp~~~   50 (157)
T cd08057           1 VQLHPLVLLNISDHYTRRK-YGIKRVIGVLLGYVDGDKIEVTNSFELPFDE   50 (157)
T ss_pred             CEEccHHHhhHHHHHHhcc-CCCCeEEEEEEeEEeCCEEEEEEeEEccccC
Confidence            6899999999999999987 3568999999999999999999999999966

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=99.68  E-value=2.5e-17  Score=124.90  Aligned_cols=50  Identities=30%  Similarity=0.551  Sum_probs=46.4

Q ss_pred             EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      |+|||+|+|+|+|||.++. .++.+|+|+|||...++.+|||||||+|+.+
T Consensus         1 v~ihPlVll~I~dH~~R~~-~~~~~V~G~LLG~~~~~~veItnsF~~p~~~   50 (265)
T cd08064           1 VRVHPVVLFSILDSYERRN-EGQERVIGTLLGTRSEGEVEITNCFAVPHNE   50 (265)
T ss_pred             CEEccHHHHhHHHHHhhhc-CCCcEEEEEEEEEEeCCEEEEEeCeecceeC
Confidence            6899999999999999986 4578999999999999999999999999976

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

Probab=99.67  E-value=1.3e-16  Score=123.02  Aligned_cols=53  Identities=25%  Similarity=0.374  Sum_probs=48.4

Q ss_pred             eeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          17 SYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        17 ~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      ++|+|||+|+|+|+|||.++.+..+.+|+|+|||...++.+||||||++|+.+
T Consensus         1 ~~V~ihplVLl~I~dh~~R~~~~~~~~ViG~LLG~~~~~~veItnsF~~p~~~   53 (280)
T cd08062           1 KKVVVHPLVLLSVVDHYNRVAKGTSKRVVGVLLGSWKKGVLDVTNSFAVPFEE   53 (280)
T ss_pred             CeEEEehHHHHHHHHHHhhhcCCCCceEEEEEEEEEeCCEEEEEEeeecCccC
Confidence            47999999999999999998744468999999999999999999999999976

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.

>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors

Probab=99.65  E-value=1e-16  Score=106.21  Aligned_cols=52  Identities=35%  Similarity=0.549  Sum_probs=48.8

Q ss_pred             CeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCC-EEEEEeeccCCCCC
Q psy9217          15 PISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDN-RLEITNCFPFPKNY   69 (90)
Q Consensus        15 ~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~-~lEVTn~Fp~P~~~   69 (90)
                      ++.+|+|+|+|+++|++||.++.   +.+++|.|||...++ ++||||||++|..+
T Consensus         2 s~~~V~i~p~vll~i~~h~~r~~---~~~v~G~LlG~~~~~~~v~I~~~f~~p~~~   54 (114)
T PF01398_consen    2 SVQTVQIHPLVLLKIIDHATRSS---PNEVIGLLLGTQDGDNTVEITNSFPVPHSE   54 (114)
T ss_dssp             SCEEEEEEHHHHHHHHHHHHHHH---CTEEEEEEEEEEETT-EEEEEEEEEESEEE
T ss_pred             CcEEEEECHHHHHHHHHHHhcCC---CCEEEEEEEEEecCceEEEEEEEEEeeEec
Confidence            57899999999999999999988   569999999999999 99999999999976

This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.

>KOG2975|consensus

Probab=99.64  E-value=3.2e-17  Score=127.66  Aligned_cols=71  Identities=27%  Similarity=0.448  Sum_probs=60.9

Q ss_pred             CCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC-CC------Ccccccchhhhhhh
Q psy9217          14 SPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY-DE------SVDEGCYEDSETLS   85 (90)
Q Consensus        14 ~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~-de------~~~~~~Yq~~~~l~   85 (90)
                      +....|+|+|+|+|+|++|+.++. ++.++|+|+|||...+|++||||||++||++ +|      ++..+||.+.++.+
T Consensus        18 ss~ltv~ihP~Vlf~ivD~~~RR~-~~~~rviGTLLG~~~~g~ieitNCFaVPhnEssdqvevdm~y~~~M~~l~~k~n   95 (288)
T KOG2975|consen   18 SSNLTVRLHPVVLFSIVDAYERRN-KGAERVIGTLLGTVDKGSVEVTNCFAVPHNESSDQVEVDMEYAKNMYELHKKVN   95 (288)
T ss_pred             CCCceEEEcceEEeEeehhhhcCC-ccchhhhhheeecccCCeEEEEEeeeccCccccccceeeHHHHHHHHHHhcccC
Confidence            345689999999999999999999 7789999999999999999999999999998 33      24457788776654

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

Probab=99.57  E-value=1.2e-15  Score=117.01  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=46.8

Q ss_pred             eEEEehhHHHHHHHHhhhcCCCC---cceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          18 YVQMDGLAVMKIVKHCHEESTNN---IEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        18 ~V~id~lVllKIikH~~~~~~~~---~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +|+|||+|+|+|++||.+.....   +.+|+|+|||.+.++.|||||||++|+.+
T Consensus         2 ~V~lHPlVll~I~dH~~R~~~~~~~~~~~v~G~LLG~~~~~~veItnsF~~p~~~   56 (288)
T cd08063           2 SVKLHPLVILNISDHITRHRAQSQSEPPRVVGALLGQQDGREIEIENSFELKYDT   56 (288)
T ss_pred             eEEEecceeeeHHhhHhHHhccCCCCCCcEEEEEEEEEcCCEEEEEEEEeccccc
Confidence            69999999999999999975322   57999999999999999999999999976

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=99.50  E-value=3.2e-14  Score=108.92  Aligned_cols=54  Identities=24%  Similarity=0.367  Sum_probs=50.1

Q ss_pred             CCCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          13 ESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        13 ~~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      ...+++|+|+++|++||++||++..   |.+|+|.|||.+.+++++||||||+|+.+
T Consensus         6 ~~~~~~V~Is~~allkil~Ha~~~~---p~Ev~GlLlG~~~~~~v~Vt~~fp~p~~~   59 (268)
T cd08069           6 PDYFEKVYISSLALLKMLKHARAGG---PIEVMGLMLGKVDDYTIIVVDVFALPVEG   59 (268)
T ss_pred             CCcccEEEECHHHHHHHHHHHhccC---CceEEEEEEeeecCCeEEEEEEEECCcCC
Confidence            3468999999999999999999977   78999999999999999999999999865

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>KOG1556|consensus

Probab=99.12  E-value=8.9e-11  Score=91.85  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=61.5

Q ss_pred             CCCCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCCCCC----------cccccchhh
Q psy9217          12 DESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDES----------VDEGCYEDS   81 (90)
Q Consensus        12 ~~~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~de~----------~~~~~Yq~~   81 (90)
                      ..-++.+|-|+|||||.+++||.+....+..+|.|.|||-+.+++|.|||||++|-.+||.          +-++||.+-
T Consensus         4 ~~~~~~kViVhPLVLLS~VDhynR~~k~~~KRvvGvLLG~~~~~~i~vtnSfAvpFeEDdk~~svWFlDh~Y~esM~~mf   83 (309)
T KOG1556|consen    4 SELTVEKVIVHPLVLLSAVDHYNRVGKDTNKRVVGVLLGSWNGDVIDVTNSFAVPFEEDDKDKSVWFLDHNYIESMFGMF   83 (309)
T ss_pred             cccccceeeeehhHHHHHHHHHhhhccCcCceEEEEEEecCCCCeEEeecceeccccccCCCCceEEeccHHHHHHHHHH
Confidence            3456889999999999999999998865568999999999999999999999999877442          224677766


Q ss_pred             hhhhc
Q psy9217          82 ETLSR   86 (90)
Q Consensus        82 ~~l~~   86 (90)
                      ++++.
T Consensus        84 kKvNa   88 (309)
T KOG1556|consen   84 KKVNA   88 (309)
T ss_pred             HHhcc
Confidence            66553

>smart00232 JAB_MPN JAB/MPN domain

Probab=99.07  E-value=4e-10  Score=74.76  Aligned_cols=49  Identities=29%  Similarity=0.440  Sum_probs=45.6

Q ss_pred             eEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        18 ~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      .|+|+++|+++|++||.+..   |.++.|.|+|...+++++|++||++|...
T Consensus         1 ~v~i~~~v~~~i~~h~~~~~---p~e~~G~L~G~~~~~~~~i~~~~~~p~~~   49 (135)
T smart00232        1 EVKVHPLVPLNILKHAIRDG---PEEVCGVLLGKSNKDRPEVKEVFAVPNEP   49 (135)
T ss_pred             CEEEcHHHHHHHHHHHhcCC---CcEEEEEEEEEEcCCEEEEEEEEecCcCC
Confidence            37899999999999999987   78999999999999999999999999865

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.

>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase

Probab=99.04  E-value=4.7e-10  Score=82.52  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=43.1

Q ss_pred             eEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe--CCEEEEEeeccCCCCC
Q psy9217          18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVV--DNRLEITNCFPFPKNY   69 (90)
Q Consensus        18 ~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~--~~~lEVTn~Fp~P~~~   69 (90)
                      +|+|+++|+|||++||++..    .++.|.|+|...  ++.++||+|||+|...
T Consensus         6 ~V~Is~~all~m~~Ha~~~~----~EvcGlL~G~~d~~~~~l~Vt~~~p~~~~~   55 (187)
T cd08067           6 KVTVSSNALLLMDFHCHLTT----SEVIGYLGGTWDPNTQNLTILQAFPCRSRL   55 (187)
T ss_pred             EEEECHHHHHHHHHHhcCCC----cEEEEEEEeEEcCCCCeEEEEEEEecCCCC
Confidence            79999999999999999865    789999999843  5789999999999865

This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p

>KOG1554|consensus

Probab=98.94  E-value=8e-10  Score=87.78  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             CCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCCCC
Q psy9217          14 SPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDE   71 (90)
Q Consensus        14 ~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~de   71 (90)
                      ..++.|+|++++++||+.|++++.   +-++||.|+|...++++.|.+||++|+.+.|
T Consensus        50 ~~fk~vkISalAllKm~~hA~~Gg---nlEiMGlm~Gkv~g~t~IvmD~FaLPVeGTE  104 (347)
T KOG1554|consen   50 HYFKHVKISALALLKMVMHARSGG---NLEIMGLMQGKVDGDTIIVMDSFALPVEGTE  104 (347)
T ss_pred             chhhhhhhHHHHHHHHHHHHhcCC---CeEEEeeecccccCCeEEEEecccccccccc
Confidence            358899999999999999999987   7899999999999999999999999998844

>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic

Probab=98.82  E-value=7.2e-09  Score=69.79  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=37.9

Q ss_pred             hHHHHHHHHhhhcCCCCcceeeeEEeeeEe-----CCEEEEEeeccCCCCC
Q psy9217          24 LAVMKIVKHCHEESTNNIEVAQGALLGLVV-----DNRLEITNCFPFPKNY   69 (90)
Q Consensus        24 lVllKIikH~~~~~~~~~~~v~G~LLG~~~-----~~~lEVTn~Fp~P~~~   69 (90)
                      .|++||++||++..   |.++.|.|+|...     +.+++||||||+|...
T Consensus         1 ~~~~~i~~ha~~~~---p~E~cGlL~G~~~~~~~~~~~~~v~~~~p~~~~~   48 (119)
T cd08058           1 DALLKMLQHAESNT---GIEVMGLLCGELTHNEFTDKHVIVPKQSAGPDSC   48 (119)
T ss_pred             CHHHHHHHHhcCCC---CeEEEEEeeeEEecCccceeEEEEeecCCCCCCc
Confidence            37999999999998   7899999999865     5679999999999754

This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot

>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains

Probab=98.63  E-value=6.3e-08  Score=62.97  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=36.3

Q ss_pred             HHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          27 MKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        27 lKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      -+|++||.+..   |.++.|.|+|...+++++|++||++|...
T Consensus         2 k~il~~a~~~~---~~ev~G~L~G~~~~~~~~i~~~~~~~~~~   41 (116)
T cd07767           2 KMFLDAAKSIN---GKEVIGLLYGSKTKKVLDVDEVIAVPFDE   41 (116)
T ss_pred             HhHHHHHhcCC---CcEEEEEeEEEEcCCEEEEEEEEecccCC
Confidence            57999999986   68999999999999999999999999855

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J

>KOG3050|consensus

Probab=97.81  E-value=7.2e-06  Score=64.44  Aligned_cols=55  Identities=25%  Similarity=0.357  Sum_probs=45.3

Q ss_pred             CeeeEEEehhHHHHHHHHhhhcCC---CCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          15 PISYVQMDGLAVMKIVKHCHEEST---NNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        15 ~v~~V~id~lVllKIikH~~~~~~---~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      --.+|.++|||+|+|-+|+.+-..   +....|.|.|+|...+..+||.|+|-+-...
T Consensus         7 ~s~tv~LHPLVImniSdH~tR~k~Q~gpp~~~VyGaliG~Q~GR~vEi~NSFeL~~d~   64 (299)
T KOG3050|consen    7 GSVTVKLHPLVIMNISDHYTRVKTQLGPPVKQVYGALIGKQRGRNVEIMNSFELKMDT   64 (299)
T ss_pred             CceeEEeccEEEEehhHHHHHHHhhcCCcHHHhhhhheecccCceEEEeeeeEEEecc
Confidence            345899999999999999988521   2123799999999999999999999997544

>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p)

Probab=97.59  E-value=9.5e-05  Score=54.28  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=39.6

Q ss_pred             ehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe-CCEEEEEeeccCCCCC
Q psy9217          22 DGLAVMKIVKHCHEESTNNIEVAQGALLGLVV-DNRLEITNCFPFPKNY   69 (90)
Q Consensus        22 d~lVllKIikH~~~~~~~~~~~v~G~LLG~~~-~~~lEVTn~Fp~P~~~   69 (90)
                      ...+..||+.||...+   +..+-|.|+|... ++.+.|++++|++|..
T Consensus         2 s~~ay~ki~~HA~k~p---~~evcGlLlG~~~~~~~~~V~d~vPl~h~~   47 (182)
T cd08060           2 STLAYVKMLLHAAKYP---HCAVNGLLLGKKSSGGSVEITDAVPLFHSC   47 (182)
T ss_pred             CHHHHHHHHHHHHHcC---CchheEEEEeeecCCCCEEEEEEEEcCCCc
Confidence            4678899999999966   6799999999977 8889999999999864

This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.

>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

Probab=97.37  E-value=0.0005  Score=53.00  Aligned_cols=50  Identities=16%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             eeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe-------CCEEEEEeeccCCCC
Q psy9217          16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVV-------DNRLEITNCFPFPKN   68 (90)
Q Consensus        16 v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~-------~~~lEVTn~Fp~P~~   68 (90)
                      +++|.|...++++|+.||++..   |.++.|.|+|...       ...++|+.-++.+..
T Consensus         1 l~~V~Is~~~l~~il~HA~~~~---P~EvCGLL~G~~~~~~~~~~~~~v~i~~~~~~~~~   57 (244)
T cd08068           1 LSKVHLSADVYLVCLTHALSTE---KEEVMGLLIGEIEVSKKGEEVAIVHISAVIILRRS   57 (244)
T ss_pred             CcEEEECHHHHHHHHHHHHhCC---CcceeEEEEeecccccccccceeEEEeeecccccc
Confidence            3689999999999999999998   7999999999763       556777777776543

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai

>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function

Probab=97.24  E-value=0.00054  Score=50.87  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=43.3

Q ss_pred             eEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCE--EEEEeeccCCCCC
Q psy9217          18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNR--LEITNCFPFPKNY   69 (90)
Q Consensus        18 ~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~--lEVTn~Fp~P~~~   69 (90)
                      +|+|+..+-.||+=||-..+   ...|.|.|||-..++.  ++|++|.|+=|..
T Consensus         3 ~v~is~~AY~K~~LHaaKyP---~~aVnGvLlg~~~~~~~~v~i~DaVPLfH~~   53 (196)
T PF03665_consen    3 SVEISSRAYAKMILHAAKYP---HCAVNGVLLGKSSKSSSEVEIVDAVPLFHHW   53 (196)
T ss_pred             eEEEcHHHHHHHHHHhccCC---CCceeeEEEeccCCCCceEEEeeceeccccc
Confidence            68999999999999999987   5789999999876444  9999999999853

>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)

Probab=96.62  E-value=0.0034  Score=42.50  Aligned_cols=42  Identities=24%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             HHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          25 AVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        25 VllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      ++-+|++||++.+   |.++.|.|+|...+....|+..||.|...
T Consensus         3 ~~~~il~ha~~~~---P~E~cGlL~G~~~~~~~~i~~~~p~~n~~   44 (128)
T cd08070           3 LLEAILAHAEAEY---PEECCGLLLGKGGGVTAIVTEVYPVRNVA   44 (128)
T ss_pred             HHHHHHHHHHhCC---CCceEEEEEeecCCCCceEEEEEEccCCC
Confidence            5678999999998   78999999999887777789999999865

This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family

Probab=96.58  E-value=0.0099  Score=43.20  Aligned_cols=52  Identities=15%  Similarity=0.071  Sum_probs=44.0

Q ss_pred             eeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          17 SYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        17 ~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      ..+.|..-.+-||+.||+.+. +.|.++.|.|+|...+++.+|+++|..|...
T Consensus         2 ~~l~Ipk~il~~~l~~A~~~~-~~p~E~cGlL~G~~~~~~~~I~~i~~~~q~~   53 (173)
T cd08066           2 RQVVVPADLMDKFLQLAEPNT-SRNLETCGILCGKLSNNAFFITHLIIPKQSG   53 (173)
T ss_pred             eEEEECHHHHHHHHHHHHhCC-CCCCeEEEEEEeEcCCCeEEEEEEEeccccC
Confidence            357888899999999999996 3368999999999888999999997777655

AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al

>KOG3289|consensus

Probab=96.43  E-value=0.0054  Score=46.37  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=43.3

Q ss_pred             eEEEehhHHHHHHHHhhhcCCCCcceeeeEEee--eEeCCEEEEEeeccCCCCC
Q psy9217          18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLG--LVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        18 ~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG--~~~~~~lEVTn~Fp~P~~~   69 (90)
                      .|+|.+++-.|||=||-+.+   ..-|.|.|+|  --.++.+|||+|.|+=|+.
T Consensus         3 ~veis~~aY~kmiLH~akyp---h~aVnGLLla~~~~kg~~v~itdcVPLfH~~   53 (199)
T KOG3289|consen    3 EVEISALAYVKMILHAAKYP---HAAVNGLLLAPATGKGECVEITDCVPLFHSH   53 (199)
T ss_pred             ceeehhhHHHHHHHHhccCc---ccceeeEEEeccCCCCCeEEEEecchhhccc
Confidence            58999999999999999987   4679999999  4568999999999998875

>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme

Probab=94.82  E-value=0.051  Score=36.87  Aligned_cols=39  Identities=15%  Similarity=0.038  Sum_probs=32.8

Q ss_pred             hHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          24 LAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        24 lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      -.+-.|++||++.+   |.++-|.|+|...    .||+.+++|...
T Consensus         4 ~~~~~i~~ha~~~~---P~E~CGlL~G~~~----~v~~~~~~~n~~   42 (117)
T cd08072           4 DLLDSILEAAKSSH---PNEFAALLRGKDG----VITELLILPGTE   42 (117)
T ss_pred             HHHHHHHHHHhhcC---CceEEEEEEeecc----EEEEEEECCCCC
Confidence            45668999999999   7899999999653    699999999654

This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A

Probab=92.65  E-value=0.41  Score=30.41  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             hHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeecc
Q psy9217          24 LAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFP   64 (90)
Q Consensus        24 lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp   64 (90)
                      .++-+|+.||++..   |.++-|.|+|...+..+.|+...+
T Consensus         3 ~~~~~i~~~~~~~~---p~E~~G~L~g~~~~~~~~~~~~~~   40 (104)
T PF14464_consen    3 EVLEQIIAHARAAY---PNEACGLLLGRRDDQRFIVVPNVN   40 (104)
T ss_dssp             HHHHHHHHHHHHHT---TS-EEEEEEEEEECCEEEEEEEEE
T ss_pred             HHHHHHHHHHhhCC---CCeEEEEEEEEecCCEEEEEeCCC
Confidence            46778999999998   789999999998888888877765

>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family

Probab=90.87  E-value=0.59  Score=33.03  Aligned_cols=41  Identities=20%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             HHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCC
Q psy9217          25 AVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPK   67 (90)
Q Consensus        25 VllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~   67 (90)
                      +++++++.|+... ..+.++=|.|+|...+..+.|+.+- .|.
T Consensus         1 ~v~~~~~~~~Q~~-~~~~EtGGiLiG~~~~~~~ii~~~t-~P~   41 (131)
T TIGR02256         1 VVVAMLKSYRQWH-DLSTETGGVLIGERRGAHAVITKIS-EPG   41 (131)
T ss_pred             CHHHHHHHHHhCc-CCCCccceEEEEEEcCCcEEEEEEE-cCC
Confidence            4788888898887 5578999999998878889999855 443

This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.

>KOG1555|consensus

Probab=88.81  E-value=0.37  Score=38.80  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=44.2

Q ss_pred             eeeEEEehhHHHHHHHHhhhcCCCCcce-eeeEE-ee----eEeCCEEEEEeeccCCCCC
Q psy9217          16 ISYVQMDGLAVMKIVKHCHEESTNNIEV-AQGAL-LG----LVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        16 v~~V~id~lVllKIikH~~~~~~~~~~~-v~G~L-LG----~~~~~~lEVTn~Fp~P~~~   69 (90)
                      -.+|.|..++++++.+|.+...   |.. ++|.| ||    ++.+-++.|...|+.|..+
T Consensus        30 ~e~v~i~slall~m~rh~r~~~---p~e~v~Glm~lg~~~~fv~~~Tv~vv~v~am~~sg   86 (316)
T KOG1555|consen   30 KETVYISSLALLKMLRHDRAGS---PEETVMGLMSLGRLPEFVDDYTVRVVDVFAMPQSG   86 (316)
T ss_pred             cceeeeehhhhhhcccccccCC---chhhccceeecccccceeeecceeeeeeecccccc
Confidence            4589999999999999999987   555 99999 99    4668888899999999876

>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]

Probab=80.07  E-value=3.4  Score=27.98  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=32.9

Q ss_pred             EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCC
Q psy9217          19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKN   68 (90)
Q Consensus        19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~   68 (90)
                      +.|...++-.|+.|+++..   |.++.|.|+|...+     .-+|+++..
T Consensus         2 ~~i~~~~l~~il~~a~~~~---p~E~~g~l~~~~~~-----~~~~~~~n~   43 (134)
T COG1310           2 LVIPKEVLGAILEHARREH---PREVCGLLAGTREG-----ERYFPLKNV   43 (134)
T ss_pred             ceecHHHHHHHHHHHHhcC---ChheEEEEEeeccc-----ceeeccccc
Confidence            4577889999999999998   68999999998655     444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	1e-12
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	8e-10
2znr_A	178	AMSH-like protease; metal binding protein, alterna	1e-06
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	3e-06

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187

 Score = 58.9 bits (142), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 13 ESPISYVQMDGLAVMKIVKHCHEES-TNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDE 71
          E  +  V +  L ++ +V H +      N +   G LLG      L+++N F  P + D+
Sbjct: 4  ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDD 63

Query: 72 SVDEGCYEDSE 82
            D   + D +
Sbjct: 64 KDDSVWFLDHD 74

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141

 Score = 51.0 bits (122), Expect = 8e-10
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQ--GALLGLVVDNRLEITNCFPFPKNYDESVDEG 76
          + +  L +M I +H       + E  Q  GAL+G      +EI N F    +        
Sbjct: 8  ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI 67

Query: 77 CYE 79
            +
Sbjct: 68 NKD 70

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          V +      K ++     +   IE   G L G +  N   IT+     
Sbjct: 11 VVLPEDLCHKFLQLAESNTVRGIETC-GILCGKLTHNEFTITHVIVPK 57

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          V + G    + ++     +   +    G L G ++ N   IT+     
Sbjct: 44 VVVPGRLCPQFLQLASANTARGVATC-GILCGKLMRNEFTITHVLIPK 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	99.74
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	99.72
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	99.68
4b4t_U	338	RPN8, 26S proteasome regulatory subunit RPN8; hydr	99.65
2znr_A	178	AMSH-like protease; metal binding protein, alterna	98.57
2kks_A	146	Uncharacterized protein; NESG, structural genomics	97.81
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	97.6
2kcq_A	153	MOV34/MPN/PAD-1 family; NESG, structure, structura	97.57
1oi0_A	124	AF2198, hypothetical protein AF2198; proteasome, d	96.83

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}

Probab=99.74  E-value=9.1e-19  Score=122.04  Aligned_cols=55  Identities=22%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             CeeeEEEehhHHHHHHHHhhhcCC--CCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          15 PISYVQMDGLAVMKIVKHCHEEST--NNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        15 ~v~~V~id~lVllKIikH~~~~~~--~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +..+|+|+|+|+|||+|||.|...  +.+.+++|+|||...+++||||||||+|+.+
T Consensus         4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~   60 (141)
T 4e0q_A            4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDV   60 (141)
T ss_dssp             -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEE
T ss_pred             CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccC
Confidence            467899999999999999988521  2367999999999999999999999999976

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.5e-18  Score=130.72  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=55.5

Q ss_pred             cccCCCCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe-CCEEEEEeeccCCCCCCC-C--cccccchhh
Q psy9217           9 VQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVV-DNRLEITNCFPFPKNYDE-S--VDEGCYEDS   81 (90)
Q Consensus         9 ~~~~~~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~-~~~lEVTn~Fp~P~~~de-~--~~~~~Yq~~   81 (90)
                      ....+.++++|+|+++|||||+|||++..   |.+|+|.|||... +++|+||||||+|+.+++ .  ..+..||.+
T Consensus        17 ~~~~~~~~~~V~is~lallkm~~Ha~~~~---~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~   90 (306)
T 4b4t_V           17 DTGRDDTKETVYISSIALLKMLKHGRAGV---PMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAK   90 (306)
T ss_dssp             CCCCCSSCCEEEECHHHHHHHHHHTCSCS---SSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHH
T ss_pred             CCCCCCCCCEEEEeHHHHHHHHHHhcCCC---CceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHH
Confidence            34455679999999999999999999887   7899999999754 568999999999987633 1  223456643

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A

Probab=99.68  E-value=2.8e-17  Score=116.67  Aligned_cols=57  Identities=25%  Similarity=0.391  Sum_probs=50.0

Q ss_pred             CCCeeeEEEehhHHHHHHHHhhhcCC-CCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          13 ESPISYVQMDGLAVMKIVKHCHEEST-NNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        13 ~~~v~~V~id~lVllKIikH~~~~~~-~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +.++.+|+|+|+|+|||++||.+... ..+.+|+|.|||...+++++||||||+|+.+
T Consensus         4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~   61 (187)
T 2o95_A            4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE   61 (187)
T ss_dssp             CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEE
T ss_pred             CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcc
Confidence            45789999999999999999988620 1268999999999999999999999999976

>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.7e-17  Score=125.16  Aligned_cols=54  Identities=20%  Similarity=0.346  Sum_probs=48.4

Q ss_pred             eeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        16 v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      -++|+|||+|+|+|++||.|.....+.+|+|+|||.+.+++|||||||++|+.+
T Consensus         5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e   58 (338)
T 4b4t_U            5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEE   58 (338)
T ss_dssp             CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEE
T ss_pred             CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEecccc
Confidence            468999999999999999984435567999999999999999999999999865

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A

Probab=98.57  E-value=1.1e-07  Score=68.01  Aligned_cols=55  Identities=15%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             CCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          14 SPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        14 ~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      .++..|.|...++.||++||+++. +.+.++.|.|+|...++.++||++|++|..+
T Consensus         6 ~~~~~v~i~~~~l~k~l~hA~~~~-~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~   60 (178)
T 2znr_A            6 EGLRCVVLPEDLCHKFLQLAESNT-VRGIETCGILCGKLTHNEFTITHVIVPKQSA   60 (178)
T ss_dssp             CSCCCEEEETTHHHHHHHHHHHHH-TTTCCCEEEEEEEEETTEEEEEEEEECCEEE
T ss_pred             CCcEEEEECHHHHHHHHHHHHhCC-CCCceEEEEEeeEecCCCeEEEEEEeCCcCC
Confidence            468899999999999999999987 3347899999999998999999999999754

>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}

Probab=97.81  E-value=6.6e-05  Score=51.05  Aligned_cols=48  Identities=13%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +.|...++.+|++|+++..   |.++.|.|+|...++.+.|+..||.|...
T Consensus         2 l~i~~~~l~~i~~ha~~~~---p~E~cGlL~G~~~~~~~~v~~~~p~~n~~   49 (146)
T 2kks_A            2 ITLTKKQMEEMLAHARQAL---PNEACGLLGGRRDGDDRWVERVYPLNNLD   49 (146)
T ss_dssp             EEEEHHHHHHHHHHHHHHT---TSCEEEEEEEEEETTEEEEEEEECCCCCS
T ss_pred             EEECHHHHHHHHHHHHhcC---CcceEEEEEEEEcCCCcEEEEEEECCCcC
Confidence            6789999999999999988   78999999999888889999999999654

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A

Probab=97.60  E-value=8.5e-05  Score=54.82  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=46.6

Q ss_pred             eeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        16 v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +..|.|...++-||+.|++.+. +.+.++.|.|+|...++.++|+++|..|..+
T Consensus        41 lr~v~Ipk~ll~kfL~~A~~~t-p~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~g   93 (211)
T 3rzv_A           41 LRHVVVPGRLCPQFLQLASANT-ARGVATCGILCGKLMRNEFTITHVLIPKQSA   93 (211)
T ss_dssp             BCCEEEETTHHHHHHHHHHHHH-HTTCCCEEEEEEEEETTEEEEEEEEECCEEE
T ss_pred             cEEEEECHHHHHHHHHHHHhCC-CCCceEEEEEEeEcCCCCEEEEEEEeCCccC
Confidence            5789999999999999999986 3347899999999999999999999877654

>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}

Probab=97.57  E-value=5.1e-05  Score=51.97  Aligned_cols=46  Identities=20%  Similarity=0.142  Sum_probs=41.9

Q ss_pred             EEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe-CCEEEEEeeccCCCC
Q psy9217          20 QMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVV-DNRLEITNCFPFPKN   68 (90)
Q Consensus        20 ~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~-~~~lEVTn~Fp~P~~   68 (90)
                      +|...++.+|++|+++..   |.++.|.|+|... ++++.|+..||.|..
T Consensus         2 ~i~~~~l~~i~~ha~~~~---p~E~cGlL~G~~~~~~~~~v~~~~p~~n~   48 (153)
T 2kcq_A            2 KTTPDILDQIRVHGADAY---PEEGCGFLLGTVTDDGDNRVAALHRATNR   48 (153)
T ss_dssp             BCCHHHHHHHHHHHHHHT---TSCCCEEEEEEECTTSCEEEEEEEESSCC
T ss_pred             EeCHHHHHHHHHHHHhcC---CcceEEEEEEeeccCCCeEEEEEEECCCC
Confidence            577889999999999988   7899999999987 788999999999986

>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A

Probab=96.83  E-value=0.00074  Score=44.64  Aligned_cols=43  Identities=9%  Similarity=0.041  Sum_probs=38.4

Q ss_pred             EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +.|...++.+|++|+++..   |.++.|.|+|...    .|+..|++| +.
T Consensus         4 v~i~~~~l~~i~~ha~~~~---P~E~cGlL~g~~~----~v~~~~~~p-~~   46 (124)
T 1oi0_A            4 MKISRGLLKTILEAAKSAH---PDEFIALLSGSKD----VMDELIFLP-FV   46 (124)
T ss_dssp             CEECHHHHHHHHHHHHHHT---TSCCEEEEEESTT----EECEEEECC-CC
T ss_pred             EEEcHHHHHHHHHHHHhcC---CCeeEEEEecccC----EEEEEEECC-CC
Confidence            6789999999999999998   7899999999763    889999999 53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1oi0a_	121	Hypothetical protein AF2198 {Archaeon Archaeoglobu	95.32

>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.32  E-value=0.0061  Score=39.11  Aligned_cols=45  Identities=9%  Similarity=0.039  Sum_probs=38.5

Q ss_pred             eEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217          18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY   69 (90)
Q Consensus        18 ~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~   69 (90)
                      +++|..-++-.|++||++.+   |.++.|.|+|-.  +  .|+..++.|...
T Consensus         3 ~l~I~~~~l~~i~~hA~~~~---P~E~cGlL~G~~--~--~i~~~~~~~n~~   47 (121)
T d1oi0a_           3 SMKISRGLLKTILEAAKSAH---PDEFIALLSGSK--D--VMDELIFLPFVS   47 (121)
T ss_dssp             SCEECHHHHHHHHHHHHHHT---TSCCEEEEEEST--T--EECEEEECCCCC
T ss_pred             eEEECHHHHHHHHHHHHhcC---CceeEEEEEecC--C--cEEEEEEcCCCC
Confidence            57899999999999999999   789999999953  3  467888888764