Psyllid ID: psy9255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MRKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKEMLTDLLSLLQQE
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHcccccEEEEEEccccEEEEEEccccccEEEEEcccccccccccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHccccEEEEEEEcccEEEEEEEccccccEEEEEEcHHHccccHHccccccccEEEEEEccc
Coil and Loop (DISEMBL)
MRKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDeisqdtgkycfgVEDTLRALELGSVETLICWENLDIQRYVLknhstsedrvlhltpeqekdkshftdkEMLTDLLSLLQQE
Flexible Loop (DISEMBL)
mrkyfkdkhkylgrypavqdlVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTpeqekdkshftdkEMLTDLLSLLQQE
Low Complexity Region (SEG)
MRKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKEMLTDLLSLLQQE
Disordered region (IsUnstruct)
*****KDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN**************************************
Disordered Region (DISOPRED)
********HKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL***********T**EMLTDLLS*****
Disordered Region (DISEMBL)
MRKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKEMLTDLLSLLQQE
Disordered Region (DISPRO)
*RKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKEMLTDLLSLL***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKEMLTDLLSLLQQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q9VPH7	438	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.907	5e-35
Q9GR88	435	Eukaryotic peptide chain	N/A	N/A	0.590	0.172	0.746	6e-30
Q5U2Q7	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.773	2e-29
P62497	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.773	2e-29
Q8BWY3	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.773	2e-29
P62496	437	Eukaryotic peptide chain	N/A	N/A	0.590	0.171	0.773	2e-29
P62495	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.773	2e-29
Q0VCX5	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.773	2e-29
Q5R4C7	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.76	1e-28
P62498	437	Eukaryotic peptide chain	yes	N/A	0.590	0.171	0.746	2e-28

>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2

 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%), Gaps = 1/76 (1%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED-RVLH 99
           IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ S    VLH
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLH 346

Query: 100 LTPEQEKDKSHFTDKE 115
           LTPEQEKDKSHFTDKE
Sbjct: 347 LTPEQEKDKSHFTDKE 362

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
Drosophila melanogaster (taxid: 7227)

>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 68/75 (90%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGV+DTL+ALE+G+VE LI WENLD  RYVLKNH+T E+++L L
Sbjct: 287 IGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFL 346

Query: 101 TPEQEKDKSHFTDKE 115
            P+QEKDK+HFTDK+
Sbjct: 347 KPDQEKDKTHFTDKD 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.

Polyandrocarpa misakiensis (taxid: 7723)

>sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Rattus norvegicus (taxid: 10116)

>sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (By similarity). Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Mus musculus (taxid: 10090)

>sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Mesocricetus auratus (taxid: 10036)

>sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Homo sapiens (taxid: 9606)

>sp|Q0VCX5|ERF1_BOVIN Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Bos taurus (taxid: 9913)

>sp|Q5R4C7|ERF1_PONAB Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 66/75 (88%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YF EISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFGEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Pongo abelii (taxid: 9601)

>sp|P62498|ERF1_XENTR Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 67/75 (89%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL+ + + E++ L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLRCNGSEEEKTLYL 346

Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHF DKE
Sbjct: 347 TPEQEKDKSHFIDKE 361

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
307202624	442	Eukaryotic peptide chain release factor	0.629	0.180	0.862	3e-35
383853116	437	PREDICTED: eukaryotic peptide chain rele	0.629	0.183	0.862	4e-35
350408757	437	PREDICTED: eukaryotic peptide chain rele	0.629	0.183	0.862	4e-35
156548282	437	PREDICTED: eukaryotic peptide chain rele	0.629	0.183	0.862	7e-35
307184923	437	Eukaryotic peptide chain release factor	0.629	0.183	0.85	1e-34
193589590	438	PREDICTED: eukaryotic peptide chain rele	0.629	0.182	0.837	1e-34
332028400	437	Eukaryotic peptide chain release factor	0.629	0.183	0.85	1e-34
328711925	440	PREDICTED: eukaryotic peptide chain rele	0.629	0.181	0.837	2e-34
340716979	438	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.629	0.182	0.837	4e-34
114052402	437	eukaryotic translation termination facto	0.629	0.183	0.837	5e-34

>gi|307202624|gb|EFN81945.1| Eukaryotic peptide chain release factor subunit 1 [Harpegnathos saltator]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNAEEKVLHL 346

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 347 TPEQEKDKTHFTDKESGVEL 366

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853116|ref|XP_003702070.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Megachile rotundata]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNAEEKVLHL 346

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 347 TPEQEKDKTHFTDKESGVEL 366

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408757|ref|XP_003488503.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Bombus impatiens] gi|380018201|ref|XP_003693023.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Apis florea]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNAEEKVLHL 346

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 347 TPEQEKDKTHFTDKESGVEL 366

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548282|ref|XP_001605843.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 1 [Nasonia vitripennis] gi|345485977|ref|XP_003425379.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 2 [Nasonia vitripennis]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNNEEKVLHL 346

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 347 TPEQEKDKTHFTDKESGVEL 366

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184923|gb|EFN71190.1| Eukaryotic peptide chain release factor subunit 1 [Camponotus floridanus]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQ+TGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 287 IGRYFDEISQETGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNAEEKVLHL 346

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 347 TPEQEKDKTHFTDKESGVEL 366

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193589590|ref|XP_001948380.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 77/80 (96%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALELGSVETLICWENLDIQRYVLKNH+T+E+++LHL
Sbjct: 289 IGRYFDEISQDTGKYCFGVEDTLKALELGSVETLICWENLDIQRYVLKNHTTAEEKILHL 348

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDKSHFT+K+   +L
Sbjct: 349 TPEQEKDKSHFTEKDTGVEL 368

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028400|gb|EGI68444.1| Eukaryotic peptide chain release factor subunit 1 [Acromyrmex echinatior]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQ+TGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 287 IGRYFDEISQETGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNAEEKVLHL 346

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 347 TPEQEKDKTHFTDKESGVEL 366

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711925|ref|XP_003244678.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Acyrthosiphon pisum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 77/80 (96%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALELGSVETLICWENLDIQRYVLKNH+T+E+++LHL
Sbjct: 289 IGRYFDEISQDTGKYCFGVEDTLKALELGSVETLICWENLDIQRYVLKNHTTAEEKILHL 348

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDKSHFT+K+   +L
Sbjct: 349 TPEQEKDKSHFTEKDTGVEL 368

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716979|ref|XP_003396967.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-like [Bombus terrestris]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 75/80 (93%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           + +YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ +E++VLHL
Sbjct: 288 VSRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHTNAEEKVLHL 347

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDK+HFTDKE   +L
Sbjct: 348 TPEQEKDKTHFTDKESGVEL 367

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052402|ref|NP_001040243.1| eukaryotic translation termination factor 1 [Bombyx mori] gi|87248495|gb|ABD36300.1| eukaryotic translation termination factor 1 [Bombyx mori]

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 76/80 (95%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGV+DTLRALELGSVETLICWENLDIQRYVLK+H+T+++ +LHL
Sbjct: 286 IGRYFDEISQDTGKYCFGVDDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILHL 345

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDKSHFTDKE   +L
Sbjct: 346 TPEQEKDKSHFTDKESGVEL 365

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0036974	438	eRF1 "eukaryotic release facto	0.590	0.171	0.907	3.2e-33
UNIPROTKB|E1BTM1	437	ETF1 "Uncharacterized protein"	0.590	0.171	0.773	3.9e-28
UNIPROTKB|Q0VCX5	437	ETF1 "Eukaryotic peptide chain	0.590	0.171	0.773	3.9e-28
UNIPROTKB|E2RBM3	437	ETF1 "Uncharacterized protein"	0.590	0.171	0.773	3.9e-28
UNIPROTKB|B7Z7P8	423	ETF1 "Eukaryotic peptide chain	0.590	0.177	0.773	3.9e-28
UNIPROTKB|P62495	437	ETF1 "Eukaryotic peptide chain	0.590	0.171	0.773	3.9e-28
UNIPROTKB|Q96CG1	404	ETF1 "Eukaryotic peptide chain	0.590	0.185	0.773	3.9e-28
UNIPROTKB|F2Z505	437	ETF1 "Uncharacterized protein"	0.590	0.171	0.773	3.9e-28
MGI|MGI:2385071	437	Etf1 "eukaryotic translation t	0.590	0.171	0.773	3.9e-28
RGD|1305712	437	Etf1 "eukaryotic translation t	0.590	0.171	0.773	3.9e-28

FB|FBgn0036974 eRF1 "eukaryotic release factor 1" [Drosophila melanogaster (taxid:7227)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 69/76 (90%), Positives = 71/76 (93%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDR-VLH 99
             IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ S    VLH
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLH 346

Query:   100 LTPEQEKDKSHFTDKE 115
             LTPEQEKDKSHFTDKE
Sbjct:   347 LTPEQEKDKSHFTDKE 362

GO:0003747 "translation release factor activity" evidence=NAS

GO:0018444 "translation release factor complex" evidence=NAS

GO:0006415 "translational termination" evidence=ISS;IMP;NAS

GO:0005829 "cytosol" evidence=ISS

GO:0008079 "translation termination factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;NAS

GO:0006605 "protein targeting" evidence=NAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IGI

UNIPROTKB|E1BTM1 ETF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0005737 "cytoplasm" evidence=IEA

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

UNIPROTKB|Q0VCX5 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

UNIPROTKB|E2RBM3 ETF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B7Z7P8 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   273 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 332

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   333 TPEQEKDKSHFTDKE 347

GO:0005737 "cytoplasm" evidence=IEA

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

UNIPROTKB|P62495 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

GO:0003747 "translation release factor activity" evidence=TAS

GO:0043022 "ribosome binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006479 "protein methylation" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0006449 "regulation of translational termination" evidence=TAS

GO:0008079 "translation termination factor activity" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q96CG1 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   254 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 313

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   314 TPEQEKDKSHFTDKE 328

GO:0005737 "cytoplasm" evidence=IEA

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

UNIPROTKB|F2Z505 ETF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0006479 "protein methylation" evidence=IEA

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2385071 Etf1 "eukaryotic translation termination factor 1" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0003747 "translation release factor activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006415 "translational termination" evidence=ISO

GO:0006479 "protein methylation" evidence=ISO

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

RGD|1305712 Etf1 "eukaryotic translation termination factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:    41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
             IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct:   287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346

Query:   101 TPEQEKDKSHFTDKE 115
             TPEQEKDKSHFTDKE
Sbjct:   347 TPEQEKDKSHFTDKE 361

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA;ISO

GO:0016149 "translation release factor activity, codon specific" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BWY3	ERF1_MOUSE	No assigned EC number	0.7733	0.5905	0.1716	yes	N/A
Q5U2Q7	ERF1_RAT	No assigned EC number	0.7733	0.5905	0.1716	yes	N/A
Q5R4C7	ERF1_PONAB	No assigned EC number	0.76	0.5905	0.1716	yes	N/A
Q9VPH7	ERF1_DROME	No assigned EC number	0.9078	0.5905	0.1712	yes	N/A
P79063	ERF1_SCHPO	No assigned EC number	0.5217	0.5354	0.1570	yes	N/A
Q9BMX0	ERF1_DICDI	No assigned EC number	0.5466	0.5826	0.1678	yes	N/A
P35614	ERF1Z_ARATH	No assigned EC number	0.65	0.6299	0.1839	yes	N/A
O59948	ERF1_PODAS	No assigned EC number	0.5789	0.5826	0.1701	yes	N/A
P62498	ERF1_XENTR	No assigned EC number	0.7466	0.5905	0.1716	yes	N/A
Q0VCX5	ERF1_BOVIN	No assigned EC number	0.7733	0.5905	0.1716	yes	N/A
P12385	ERF1_YEAST	No assigned EC number	0.5352	0.5433	0.1578	yes	N/A
P62495	ERF1_HUMAN	No assigned EC number	0.7733	0.5905	0.1716	yes	N/A
P62497	ERF1_RABIT	No assigned EC number	0.7733	0.5905	0.1716	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
pfam03465	100	pfam03465, eRF1_3, eRF1 domain 3	4e-16
COG1503	411	COG1503, eRF1, Peptide chain release factor 1 (eRF	1e-08
TIGR03676	357	TIGR03676, aRF1/eRF1, peptide chain release factor	5e-06
PRK04011	411	PRK04011, PRK04011, peptide chain release factor 1	1e-05
COG1537	352	COG1537, PelA, Predicted RNA-binding proteins [Gen	8e-04

>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3

 Score = 68.0 bits (167), Expect = 4e-16
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 39 NNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYV 86
            + ++ +E+++DTG   +GVE+ L+ALE+G+VETL+  + L   R V
Sbjct: 6  KLLEEFLEELAKDTGLAVYGVEEVLKALEMGAVETLLISDELLRSRDV 53

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 100

>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           + ++F E+++D+G   +G E+   ALE+G+V+TL+  E+L+ +R   K          +L
Sbjct: 282 MEEFFKELAKDSGLAVYGEEEVREALEMGAVDTLLVSEDLEKERVTYKC---PTCGYENL 338

Query: 101 TPEQEKDKSHFTDKE 115
             ++E ++  F   E
Sbjct: 339 KSKREFEQKRFRCPE 353

Length = 411

>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 15/38 (39%), Positives = 29/38 (76%)

Query: 43  KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
           ++F E+++DTG   +G E+  +ALE+G+V+TL+  E++
Sbjct: 277 RFFKELAKDTGLAAYGEEEVRKALEMGAVDTLLISEDI 314

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1 [Protein synthesis, Translation factors]. Length = 357

>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK 88
           + ++F E+++D G   +G E+  +ALE+G+V+TL+  E+L   R   K
Sbjct: 283 MEEFFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYK 330

Length = 411

>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only]

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 14  RYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVET 73
           +  AV  ++ +  I      ++       ++ + +++D  K  +G+E+  +A E G+VET
Sbjct: 239 KRGAVDKILSETRIAEEIELVE-------EFLERLAKDDDKVAYGLEEVEKAAEYGAVET 291

Query: 74  LI 75
           L+
Sbjct: 292 LL 293

Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
TIGR03676	403	aRF1/eRF1 peptide chain release factor 1, archaeal	99.79
TIGR00108	409	eRF peptide chain release factor eRF/aRF, subunit	99.79
PRK04011	411	peptide chain release factor 1; Provisional	99.77
KOG0688|consensus	431		99.76
COG1503	411	eRF1 Peptide chain release factor 1 (eRF1) [Transl	99.75
TIGR00111	351	pelota probable translation factor pelota. This mo	99.54
PF03465	113	eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do	99.53
COG1537	352	PelA Predicted RNA-binding proteins [General funct	99.26
KOG2869|consensus	379		98.61
PRK05583	104	ribosomal protein L7Ae family protein; Provisional	93.99
PTZ00106	108	60S ribosomal protein L30; Provisional	93.8
PRK07714	100	hypothetical protein; Provisional	93.78
PRK06683	82	hypothetical protein; Provisional	92.88
COG1358	116	RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr	92.71
PRK01018	99	50S ribosomal protein L30e; Reviewed	92.35
PRK13602	82	putative ribosomal protein L7Ae-like; Provisional	92.22
TIGR03677	117	rpl7ae 50S ribosomal protein L7Ae. Multifunctional	92.11
PRK07283	98	hypothetical protein; Provisional	91.71
PRK04175	122	rpl7ae 50S ribosomal protein L7Ae; Validated	91.46
PRK13601	82	putative L7Ae-like ribosomal protein; Provisional	89.6
PF01248	95	Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G	87.55
COG1911	100	RPL30 Ribosomal protein L30E [Translation, ribosom	86.99
PRK13600	84	putative ribosomal protein L7Ae-like; Provisional	85.32
PRK09190	220	hypothetical protein; Provisional	84.64

>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms

Probab=99.79  E-value=4.7e-19  Score=151.91  Aligned_cols=91  Identities=25%  Similarity=0.419  Sum_probs=82.7

Q ss_pred             hhhhhhHHHHHHHHhhh----HHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          17 AVQDLVGKYEILNYERD----MDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~~e----~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      .|.+..|++|++..+.+    .+.  .+++|++||++|++|+|++|||+++|++|++||||+||||||+|...|++++|+
T Consensus       245 s~~~~~Gl~Evl~~~~~~L~~~k~~~E~~lle~f~~el~~d~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~  324 (403)
T TIGR03676       245 SYTGESGLRELVEKAEDLLKDLELMKEKKLMERFFKELVKDGGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCP  324 (403)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcC
Confidence            67889999999998763    333  389999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCccccc
Q psy9255          91 STSEDRVLHLTPEQEKD  107 (127)
Q Consensus        91 ~~g~~~v~~~~~~q~~~  107 (127)
                      .||.+.++++.+.++.+
T Consensus       325 ~c~~~~~~~~~~~~~~~  341 (403)
T TIGR03676       325 NCGYEEEKTVKPEEGDK  341 (403)
T ss_pred             CCCcceeeecccccccc
Confidence            99999999998888643

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.

>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1

Probab=99.79  E-value=4.2e-19  Score=152.17  Aligned_cols=101  Identities=27%  Similarity=0.395  Sum_probs=84.5

Q ss_pred             hhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          17 AVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      .|.++.|++|++..+.    +.+.  .+++|++||++|++|+|++|||+++|++||++|||++|||||+|...|++++|+
T Consensus       249 s~gg~~gl~E~l~~~~~~L~~~k~~~E~~lle~F~~ei~~d~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~  328 (409)
T TIGR00108       249 SYTGEFGIRELIEKSADVLAEVDYMREKKLVQRFLKELIQEDGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCA  328 (409)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcC
Confidence            4778899999998775    3333  389999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCccccccCCcccccchHH
Q psy9255          91 STSEDRVLHLTPEQEKDKSHFTDKEMLTD  119 (127)
Q Consensus        91 ~~g~~~v~~~~~~q~~~~~~~~d~~~g~e  119 (127)
                      .||..  .+++++++.+.+++.|...|.+
T Consensus       329 ~~~~~--~~~~~~~~~~~~~~~c~~~~~~  355 (409)
T TIGR00108       329 ECGEV--IEKTVRELKDKKFAICPACGQE  355 (409)
T ss_pred             CCCce--eecccccccccccccCcccCcc
Confidence            99993  6666665555455566655544

Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.

>PRK04011 peptide chain release factor 1; Provisional

Probab=99.77  E-value=1.7e-18  Score=148.50  Aligned_cols=96  Identities=23%  Similarity=0.352  Sum_probs=85.4

Q ss_pred             hhhhhhHHHHHHHHhhh----HHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          17 AVQDLVGKYEILNYERD----MDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~~e----~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      +|.+..|++|++..+.+    .+.  .+++|++||++|++|+|++|||+++|++|+++|||++|||||++...|++++|+
T Consensus       253 s~~~~~Gl~E~l~~~~~~L~~~k~~~e~~lle~f~~~l~~d~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~  332 (411)
T PRK04011        253 SYTGESGLRELVDKASDLLKEQELVKEKKLMEEFFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCP  332 (411)
T ss_pred             CCCCccCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcC
Confidence            67889999999998763    333  389999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCccccccCCcc
Q psy9255          91 STSEDRVLHLTPEQEKDKSHFT  112 (127)
Q Consensus        91 ~~g~~~v~~~~~~q~~~~~~~~  112 (127)
                      .||.+.+.++.+.++.+...+.
T Consensus       333 ~c~~~~~~~~~~~~~~~~~~c~  354 (411)
T PRK04011        333 NCGYEEEKTVKRREELPEKTCP  354 (411)
T ss_pred             CCCcceeeecccccccccccCc
Confidence            9999999999888865555444

>KOG0688|consensus

Probab=99.76  E-value=5e-19  Score=151.69  Aligned_cols=103  Identities=56%  Similarity=0.816  Sum_probs=92.7

Q ss_pred             hhhhhhHHHHHHHHhhhHHH------HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          17 AVQDLVGKYEILNYERDMDL------LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~~e~~~------~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      .|-++.|.-.++.-+.|.=.      .+++|.+||++|+.|+|++|||+++|++||+||||+|||||++|++.|+++||+
T Consensus       253 syGGengfnQaIeL~aevlsnvk~vqekkli~~yfdEisqdtgky~Fgv~dTl~aLe~gavetli~~enLd~~ry~~kn~  332 (431)
T KOG0688|consen  253 SYGGENGFNQAIELSAEVLSNVKFVQEKKLIGKYFDEISQDTGKYCFGVEDTLLALEMGAVETLIVWENLDIIRYELKNS  332 (431)
T ss_pred             cccchhhHHHHHHHHHhhhhcceeeehhhHHHHHhhhhhcccCcccccHHHHHHHHHcCCeeehhHhhhhhhhhhhhccc
Confidence            45667777777666655433      399999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCccccccCCcccccchHHH
Q psy9255          91 STSEDRVLHLTPEQEKDKSHFTDKEMLTDL  120 (127)
Q Consensus        91 ~~g~~~v~~~~~~q~~~~~~~~d~~~g~el  120 (127)
                      . |++++.++.|+|+.++++|.|++||.++
T Consensus       333 ~-~~~~i~~l~~~~e~d~s~~~Dketg~e~  361 (431)
T KOG0688|consen  333 D-GESVIGFLVPDEEKDKSHFTDKETGWEM  361 (431)
T ss_pred             C-Cccceeeecchhhcccccccccccchhh
Confidence            7 9999999999999999999999999885

>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=1.7e-18  Score=150.05  Aligned_cols=102  Identities=23%  Similarity=0.354  Sum_probs=85.9

Q ss_pred             hhhhhhhHHHHHHHHhhhHH----HH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEec
Q psy9255          16 PAVQDLVGKYEILNYERDMD----LL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN   89 (127)
Q Consensus        16 ~~~~d~~g~~e~~~~~~e~~----~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~   89 (127)
                      -+|++++|++|++..+.|.-    .+  +++|++||+++++++|+++||.++|++||+|||||+|||+|+++..|++++|
T Consensus       251 v~y~~esg~~eli~~A~d~L~~~~~~~eK~l~e~f~~e~~~~~Gla~yG~~~vr~aL~~gaVd~llv~Edl~~~r~~~~c  330 (411)
T COG1503         251 VSYTGESGLRELIEKAEDALKDVDYVREKKLMEEFFKELAKDSGLAVYGEEEVREALEMGAVDTLLVSEDLEKERVTYKC  330 (411)
T ss_pred             ccccccccHHHHHHHhHHHHHhhhhhcchhHHHHHHHHhccCcceeecchHHHHHHHHhcccceEEeeccccccceeecC
Confidence            37999999999999999765    33  9999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEeCCccccccCCcccccchHHH
Q psy9255          90 HSTSEDRVLHLTPEQEKDKSHFTDKEMLTDL  120 (127)
Q Consensus        90 ~~~g~~~v~~~~~~q~~~~~~~~d~~~g~el  120 (127)
                      +.||++..+.......  + .|.+++.|.++
T Consensus       331 ~~~~~e~~~t~~~~~~--~-~~~~~~~~~e~  358 (411)
T COG1503         331 PTCGYENLKSKREFEQ--K-RFRCPECGSEM  358 (411)
T ss_pred             CCcchhhhhccccccc--c-cccCccccccc
Confidence            9999976554333321  1 33666666543

>TIGR00111 pelota probable translation factor pelota

Probab=99.54  E-value=5.6e-15  Score=124.31  Aligned_cols=84  Identities=18%  Similarity=0.317  Sum_probs=66.9

Q ss_pred             hhhhhhhHHHHHHHH------hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-----e
Q psy9255          16 PAVQDLVGKYEILNY------ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-----I   82 (127)
Q Consensus        16 ~~~~d~~g~~e~~~~------~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-----~   82 (127)
                      -.|.+..|++|+++.      ++|.+.+  +++|++||++|++|+|++|||+++|++|+++|||++|||||++-     +
T Consensus       231 ~s~g~~~gl~EvL~~~~v~~~l~d~k~~~E~~~l~~f~~~l~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~  310 (351)
T TIGR00111       231 CSTGGRAGINEVLKRGLVARILQETRYAKEIMVIDEFLEHLAKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQREEI  310 (351)
T ss_pred             cCCCchhHHHHHHhChHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEECHHHHHHHHHcCCceEEEEecchhhhHHHH
Confidence            447789999999985      3466664  89999999999999999999999999999999999999999992     2


Q ss_pred             eEEEEecCCCCceEEEE
Q psy9255          83 QRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        83 ~Rv~~k~~~~g~~~v~~   99 (127)
                      .++.-.....|-++.++
T Consensus       311 ~~l~~~v~~~gg~V~i~  327 (351)
T TIGR00111       311 EKLLDSVESMGGKVVIL  327 (351)
T ss_pred             HHHHHHHHHcCCEEEEE
Confidence            33333334456655555

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.

>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre

Probab=99.53  E-value=4.3e-15  Score=107.67  Aligned_cols=54  Identities=31%  Similarity=0.534  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          37 LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        37 ~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      .+++|++||+++++++|+++||+++|++|+++|||++|||+|++...+...+|+
T Consensus         4 E~~~ve~f~~~l~k~~~~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~   57 (113)
T PF03465_consen    4 EKKLVEEFFEELAKDPGLAVYGIEEVKKALEMGAVETLLISDDLFRSRDVERCK   57 (113)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEESHHHHHHHHHTT-EEEEEEEHHHHTESCHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCcEEECHHHHHHHHHhCCCcEEEEecccccccceeccc
Confidence            489999999999999999999999999999999999999999998877665554

The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....

>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]

Probab=99.26  E-value=1e-11  Score=106.37  Aligned_cols=62  Identities=24%  Similarity=0.446  Sum_probs=55.2

Q ss_pred             hhHHHHHHHH------hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255          21 LVGKYEILNY------ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI   82 (127)
Q Consensus        21 ~~g~~e~~~~------~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~   82 (127)
                      ..|++|.++.      .+|.++.  .++|++||..||+++++||||.++|++|++||||++|||+|++..
T Consensus       231 ~~gi~EvLkr~~v~ki~~e~ria~e~~~~e~fl~~iak~~~~v~YG~~eV~~A~e~GAve~LLv~De~lr  300 (352)
T COG1537         231 RAGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEKAAEYGAVETLLVTDELLR  300 (352)
T ss_pred             hHHHHHHHhhhhHHhHhhhhHHHHHHHHHHHHHHHHhcCCCceeEcHHHHHHHHhcCcceeEEeehhhhc
Confidence            4589998864      4477775  899999999999999999999999999999999999999999843

>KOG2869|consensus

Probab=98.61  E-value=3.6e-08  Score=85.00  Aligned_cols=59  Identities=24%  Similarity=0.448  Sum_probs=51.0

Q ss_pred             hHHHHHH------HHhhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecC
Q psy9255          22 VGKYEIL------NYERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL   80 (127)
Q Consensus        22 ~g~~e~~------~~~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL   80 (127)
                      -+|.|++      .+++|..-+  .+.|+.||..++++|++++||.++|.+|.|.||+++|||+|++
T Consensus       251 hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~l  317 (379)
T KOG2869|consen  251 HSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDEL  317 (379)
T ss_pred             HHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhh
Confidence            3566665      344555553  8999999999999999999999999999999999999999998

>PRK05583 ribosomal protein L7Ae family protein; Provisional

Probab=93.99  E-value=0.015  Score=41.89  Aligned_cols=57  Identities=12%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCcc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPEQ  104 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~q  104 (127)
                      ++...|++++|.+.|.+|+..|.+.-+|+++|..   ..++.-+|...+..++.+.+.++
T Consensus        11 lA~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e   70 (104)
T PRK05583         11 LTKKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE   70 (104)
T ss_pred             HHHHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH
Confidence            5778899999999999999999999999999983   34444556665666666655444

>PTZ00106 60S ribosomal protein L30; Provisional

Probab=93.80  E-value=0.023  Score=41.41  Aligned_cols=52  Identities=21%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~   99 (127)
                      +|..+|+++.|.+.|.+|+..|-+..++|+.|..   ...+...|...+..++.|
T Consensus        19 la~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~   73 (108)
T PTZ00106         19 LVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHY   73 (108)
T ss_pred             HHHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEe
Confidence            6778899999999999999999999999999995   334456677777766665

>PRK07714 hypothetical protein; Provisional

Probab=93.78  E-value=0.021  Score=40.34  Aligned_cols=55  Identities=13%  Similarity=0.053  Sum_probs=42.3

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCC
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      ++...|+++.|.+.|.+|+..|-+..+|+.+|..   ..++...|...+..++.+.+.
T Consensus        12 la~raGk~v~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk   69 (100)
T PRK07714         12 LANRARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR   69 (100)
T ss_pred             HHHHhCCeeecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH
Confidence            5678899999999999999999999999999984   334445566656655544433

>PRK06683 hypothetical protein; Provisional

Probab=92.88  E-value=0.042  Score=38.16  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             hCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCcc
Q psy9255          50 QDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPEQ  104 (127)
Q Consensus        50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~q  104 (127)
                      .+.|+++.|.++|.+|+..|-+..++|.+|.+   ...+..+|...+..++.+.+..+
T Consensus         7 ~~agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~e   64 (82)
T PRK06683          7 SNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRK   64 (82)
T ss_pred             HhCCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence            46799999999999999999999999999996   33445678877877766654443

>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]

Probab=92.71  E-value=0.067  Score=39.69  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=46.5

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeCCcc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLTPEQ  104 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~~~q  104 (127)
                      .+..++++.+|.++|.+|++.|-+.-++|++|-+    +..+...|+..+...+..-++..
T Consensus        21 ~a~~~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~   81 (116)
T COG1358          21 KASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKE   81 (116)
T ss_pred             HHHhcCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence            3456789999999999999999999999999997    44556788877777776666554

>PRK01018 50S ribosomal protein L30e; Reviewed

Probab=92.35  E-value=0.064  Score=38.11  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=42.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~   99 (127)
                      ++...|+++.|.++|.+|+..|-+..++|++|..   ...+...|...+..++.|
T Consensus        10 ~a~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~   64 (99)
T PRK01018         10 VAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY   64 (99)
T ss_pred             HHHHcCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            4556899999999999999999999999999985   334456677767766666

>PRK13602 putative ribosomal protein L7Ae-like; Provisional

Probab=92.22  E-value=0.066  Score=36.97  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             HHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCc
Q psy9255          47 EISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPE  103 (127)
Q Consensus        47 eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~  103 (127)
                      .+. ..|+.+.|.++|.+|++.|-+..++|..|..   ...+...|...+..++.+.+..
T Consensus         5 ~~~-ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~   63 (82)
T PRK13602          5 KVS-QAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK   63 (82)
T ss_pred             HHH-hcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH
Confidence            344 4589999999999999999999999999986   3334566777777766665443

>TIGR03677 rpl7ae 50S ribosomal protein L7Ae

Probab=92.11  E-value=0.39  Score=35.13  Aligned_cols=55  Identities=16%  Similarity=0.199  Sum_probs=42.4

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeCC
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      ++..+|+++.|.++|.+|+..|-+.-+||+.|..    ...+...|...+...+...++
T Consensus        20 la~ragkl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk   78 (117)
T TIGR03677        20 KARETGKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK   78 (117)
T ss_pred             HHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH
Confidence            3557899999999999999999999999999993    244556677767664444433

Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.

>PRK07283 hypothetical protein; Provisional

Probab=91.71  E-value=0.24  Score=35.08  Aligned_cols=56  Identities=13%  Similarity=0.164  Sum_probs=42.3

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPE  103 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~  103 (127)
                      ++...|+++.|.+.|.+|+..|-+..+|+++|..   ..++.-+|...+..++.+.+.+
T Consensus        12 lA~raGklv~G~~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~   70 (98)
T PRK07283         12 LAQRAGRIISGEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL   70 (98)
T ss_pred             HHHHhCCeeEcHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH
Confidence            6778899999999999999999999999999984   2233335655566555554443

>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated

Probab=91.46  E-value=0.32  Score=35.88  Aligned_cols=55  Identities=24%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeCC
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      ++..+|+++.|.++|.+|++.|-+..++|++|..-    ..+...|...+...+...++
T Consensus        24 la~ragklv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk   82 (122)
T PRK04175         24 KARDTGKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK   82 (122)
T ss_pred             HHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence            46677999999999999999999999999999932    35566677777765444443

>PRK13601 putative L7Ae-like ribosomal protein; Provisional

Probab=89.60  E-value=0.14  Score=35.81  Aligned_cols=50  Identities=18%  Similarity=0.105  Sum_probs=39.9

Q ss_pred             CCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeC
Q psy9255          52 TGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        52 ~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~  101 (127)
                      .|+++.|.++|.+|+..|-+..++|..|..   ...+..+|...+..++...+
T Consensus         6 ~GKlv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t   58 (82)
T PRK13601          6 PSKRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT   58 (82)
T ss_pred             CccEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence            589999999999999999999999999986   33445677777776643333

>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=87.55  E-value=0.89  Score=30.90  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=38.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eE-EEEecCCCCceEEE
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QR-YVLKNHSTSEDRVL   98 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~R-v~~k~~~~g~~~v~   98 (127)
                      ++...+.+++|.++|.++++.|=+.-++++.|..-   .+ +...|...+...+.
T Consensus         9 ~a~~~~~lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~   63 (95)
T PF01248_consen    9 LARKAGRLVKGIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVF   63 (95)
T ss_dssp             HHHHHSEEEESHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEE
T ss_pred             HHHhcCCEEEchHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEE
Confidence            34556889999999999999999999999999852   22 34566654554433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....

>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]

Probab=86.99  E-value=1.1  Score=32.99  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD   81 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~   81 (127)
                      .+-++|+++.|.+.|.+++.+|...-++|..+.+
T Consensus        13 ~avkTGkvilG~k~tiK~lk~gkaKliiiAsN~P   46 (100)
T COG1911          13 LAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCP   46 (100)
T ss_pred             HHHhcCCEEEehHHHHHHHHcCCCcEEEEecCCC
Confidence            3557899999999999999999999999999875

>PRK13600 putative ribosomal protein L7Ae-like; Provisional

Probab=85.32  E-value=1.7  Score=30.57  Aligned_cols=47  Identities=21%  Similarity=0.381  Sum_probs=35.2

Q ss_pred             CceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEEEE
Q psy9255          53 GKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        53 g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v~~   99 (127)
                      ...++|.++|.+|++.|-+..++|..|.+.   ..+...|...|..++..
T Consensus        12 ~~~vvG~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V   61 (84)
T PRK13600         12 QHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF   61 (84)
T ss_pred             cCceeeHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            345999999999999999999999999873   22344566656554444

>PRK09190 hypothetical protein; Provisional

Probab=84.64  E-value=3.7  Score=33.45  Aligned_cols=57  Identities=16%  Similarity=0.160  Sum_probs=41.3

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCC------CCceEEEEeCCcc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHS------TSEDRVLHLTPEQ  104 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~------~g~~~v~~~~~~q  104 (127)
                      +++..|+++.|.+.|..|+..|-+.-||++.|.-   ..++.-+|..      .+..++.+.+.++
T Consensus       105 LArRAGklVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~e  170 (220)
T PRK09190        105 LARKAGQVVSGFEKVDAALRSGEAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAE  170 (220)
T ss_pred             HHhhhCCEeecHHHHHHHHHcCCceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHH
Confidence            5778899999999999999999999999999983   2222223433      4555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
3j2k_6	411	Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ		2e-30
3e1y_A	451	Crystal Structure Of Human Erf1ERF3 COMPLEX Length		2e-30
1dt9_A	437	The Crystal Structure Of Human Eukaryotic Release F		2e-30
2ktu_A	170	Human Erf1 C-Domain, "closed" Conformer Length = 17		5e-30
3e20_C	441	Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt		2e-14

>pdb|3J2K|6 Chain 6, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 411

Iteration: 1
 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 278 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 337
Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 338 TPEQEKDKSHFTDKE 352

>pdb|3E1Y|A Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 451

Iteration: 1
 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 301 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 360
Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 361 TPEQEKDKSHFTDKE 375

>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor Erf1-Mechanism Of Stop Codon Recognition And Peptidyl-Trna Hydrolysis Length = 437

Iteration: 1
 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361

>pdb|2KTU|A Chain A, Human Erf1 C-Domain, "closed" Conformer Length = 170

Iteration: 1
 Score =  125 bits (314), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 12  IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 71
Query: 101 TPEQEKDKSHFTDKE 115
           TPEQEKDKSHFTDKE
Sbjct: 72  TPEQEKDKSHFTDKE 86

>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 441

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           I ++FDEIS D+GKYCFGV DT+ AL+ G+VETL+C+ +LD+ RY  KN S     + ++
Sbjct: 292 IQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKN-SEGNPVITYM 350
Query: 101 TPEQEKDKS 109
           T EQE+  S
Sbjct: 351 TKEQEEKDS 359

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
3ir9_A	166	Peptide chain release factor subunit 1; structural	3e-17
1dt9_A	437	ERF1, protein (eukaryotic peptide chain release fa	7e-17
3e20_C	441	Eukaryotic peptide chain release factor subunit 1;	2e-13
1x52_A	124	Pelota homolog, CGI-17; ERF1_3 domain, structural	4e-11
3agk_A	373	Peptide chain release factor subunit 1; translatio	3e-07
2vgn_A	386	DOM34; translation termination factor, protein bio	3e-07
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	6e-07
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	3e-06
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	5e-06
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	7e-06

>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166

 Score = 72.0 bits (176), Expect = 3e-17
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 11  YLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGS 70
           Y      + +LV        + ++    N +  +F E+  D+GK  +G       LE+ S
Sbjct: 4   YTDES-GLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINS 62

Query: 71  VETLICWENLDIQRYVLKNHSTS-EDRVLHLTPEQEKDKSHFTDKE 115
           V+ L+  E+L  +R   K      E++        E   +     +
Sbjct: 63  VDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPK 108

>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437

 Score = 74.3 bits (181), Expect = 7e-17
 Identities = 58/90 (64%), Positives = 68/90 (75%)

Query: 31  ERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90
                     IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL   
Sbjct: 277 NVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQ 336

Query: 91  STSEDRVLHLTPEQEKDKSHFTDKEMLTDL 120
            T E+++L+LTPEQEKDKSHFTDKE   + 
Sbjct: 337 GTEEEKILYLTPEQEKDKSHFTDKETGQEH 366

>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441

 Score = 64.3 bits (155), Expect = 2e-13
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MRKYFKDKHKYLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVE 60
             +  K      G        +                  I ++FDEIS D+GKYCFGV 
Sbjct: 252 QSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVV 311

Query: 61  DTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD--KSHFTDKEMLT 118
           DT+ AL+ G+VETL+C+ +LD+ RY  KN   +         ++EKD   S   DK+   
Sbjct: 312 DTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGA 371

Query: 119 DL 120
           ++
Sbjct: 372 EM 373

>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124

 Score = 55.1 bits (133), Expect = 4e-11
 Identities = 8/65 (12%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 16 PAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLI 75
            V   +   +     + +D        ++  +  +  +  +G++   +A E  +++TL+
Sbjct: 7  GTVASRLSDTKAAGEVKALD-------DFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLL 59

Query: 76 CWENL 80
            + L
Sbjct: 60 ISDEL 64

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 18/90 (20%), Positives = 44/90 (48%)

Query: 17  AVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLIC 76
            +++ V K E +   +      N + ++   +++ TG   +G +D   ALE+G+V+TL+ 
Sbjct: 262 GLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLI 321

Query: 77  WENLDIQRYVLKNHSTSEDRVLHLTPEQEK 106
            E+ +     ++   +S  +V+ +     +
Sbjct: 322 HESREDLEEWVEKAKSSGAQVIVVPESLAE 351

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 14  RYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVET 73
           + P     +   +       MD       ++   +++D  K  +G ++ ++A E G++  
Sbjct: 264 KNPLYASKLQDTKYSKEIMVMD-------EFLLHLNKDDDKAWYGEKEVVKAAEYGAISY 316

Query: 74  LICWENL 80
           L+  + +
Sbjct: 317 LLLTDKV 323

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390

 Score = 45.9 bits (108), Expect = 6e-07
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 14  RYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVET 73
           + PAV+  +   + +   R ++       K++D +++D  K  +G    L+A ELG++  
Sbjct: 258 KDPAVESKLADTKYVQEIRVLN-------KFYDVMNEDDRKAWYGPNHVLKAFELGAIGE 310

Query: 74  LICWENLD 81
           L+  ++L 
Sbjct: 311 LLISDSLF 318

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 16  PAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLI 75
             +  ++  YEI    + M+       K  + +++      +G+E    A+E+G+VET++
Sbjct: 254 DIIDKIMTDYEIAIGAKKME-------KAMELLAKQPELVTYGLEQVKNAIEMGAVETVL 306

Query: 76  CWENLDIQRYVLKNHSTSEDRVLHLTPEQEK 106
             E+L      L +       +  +  + E 
Sbjct: 307 VIEDL------LSSDEQERLTIERMLEDIEN 331

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 16  PAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLI 75
             V  +  +  +    + ++       K  + I+++ G   +G+++   A+  G+VETL+
Sbjct: 249 GVVDRVYQENRVAKEVQLVE-------KVLENIARNNGLVAYGLKEVEEAVNYGAVETLL 301

Query: 76  CWENLDIQRYVLKNHSTSED 95
             + L       K     + 
Sbjct: 302 VLDELLKGELREKVEELMDA 321

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 16  PAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLI 75
            +V  ++ +  I+  E  ++       ++   I++      +   + L    +G+V+T++
Sbjct: 241 ESVTRILRELSIVEAEGVLE-------EFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVL 293

Query: 76  CWENL 80
             + L
Sbjct: 294 LVDTL 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
3ir9_A	166	Peptide chain release factor subunit 1; structural	99.91
3e20_C	441	Eukaryotic peptide chain release factor subunit 1;	99.76
1dt9_A	437	ERF1, protein (eukaryotic peptide chain release fa	99.72
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	99.49
1x52_A	124	Pelota homolog, CGI-17; ERF1_3 domain, structural	99.48
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	99.46
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	99.44
2vgn_A	386	DOM34; translation termination factor, protein bio	99.41
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	99.39
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	99.34
2qi2_A	347	Pelota, cell division protein pelota related prote	99.3
3agk_A	373	Peptide chain release factor subunit 1; translatio	99.25
3j21_Z	99	50S ribosomal protein L30E; archaea, archaeal, KIN	93.88
2lbw_A	121	H/ACA ribonucleoprotein complex subunit 2; L7AE, s	93.12
3v7q_A	101	Probable ribosomal protein YLXQ; L7AE superfamily,	92.43
3iz5_f	112	60S ribosomal protein L30 (L30E); eukaryotic ribos	92.37
3u5e_c	105	L32, RP73, YL38, 60S ribosomal protein L30; transl	91.93
4a18_G	104	RPL30; ribosome, eukaryotic initiation factor 6, E	91.86
2jnb_A	144	NHP2-like protein 1; splicing, KINK-turn RNA-bindi	91.82
1xbi_A	120	50S ribosomal protein L7AE; alpha-beta-alpha sandw	91.73
3on1_A	101	BH2414 protein; structural genomics, PSI-2, protei	91.65
2ale_A	134	SNU13, NHP2/L7AE family protein YEL026W; splicing,	91.43
3o85_A	122	Ribosomal protein L7AE; alpha beta sandwich fold,	90.47
1vq8_F	120	50S ribosomal protein L7AE; ribosome 50S, protein-	90.44
3cpq_A	110	50S ribosomal protein L30E; RNA-protein, elongatio	90.12
2fc3_A	124	50S ribosomal protein L7AE; alpha-beta-alpha sandw	89.58
1w41_A	101	50S ribosomal protein L30E; electrostatic interact	89.57
1rlg_A	119	50S ribosomal protein L7AE; protein-RNA, structura	88.7
3vi6_A	125	60S ribosomal protein L30; three-layer alpha/beta/	88.69
3v7e_A	82	Ribosome-associated protein L7AE-like; RNA-protein	88.67
2aif_A	135	Ribosomal protein L7A; high-mobility like protein,	87.89
2xzm_U	126	Ribosomal protein L7AE containing protein; ribosom	84.54

>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}

Probab=99.91  E-value=1.8e-24  Score=164.84  Aligned_cols=102  Identities=24%  Similarity=0.313  Sum_probs=85.5

Q ss_pred             hhhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEec
Q psy9255          16 PAVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN   89 (127)
Q Consensus        16 ~~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~   89 (127)
                      .+|+++.|++|++..+.    +.+.  .+++|++||++|++|+|++|||+++|++|++||||++|||||+|...|++++|
T Consensus         2 ~sy~ge~Gl~E~i~~~~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c   81 (166)
T 3ir9_A            2 NAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKC   81 (166)
T ss_dssp             -CCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEE
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEEC
Confidence            36899999999998775    4444  39999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEE--eCCccccccCCcccccchH
Q psy9255          90 HSTSEDRVLH--LTPEQEKDKSHFTDKEMLT  118 (127)
Q Consensus        90 ~~~g~~~v~~--~~~~q~~~~~~~~d~~~g~  118 (127)
                      +.||...+++  .+|.+ +++..+.|+++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~~~~c~~~g~  111 (166)
T 3ir9_A           82 SVCGYENKWTRRWKPGE-PAPAAGNCPKCGS  111 (166)
T ss_dssp             SSSSCEEEEEECCCC---CCCCCCBCTTTCC
T ss_pred             CCCCceeEEEeecChhh-cccccccccccCc
Confidence            9999876554  66665 3445667777665

>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}

Probab=99.76  E-value=3.8e-19  Score=152.30  Aligned_cols=103  Identities=37%  Similarity=0.624  Sum_probs=58.9

Q ss_pred             hhhhhhHHHHHHHHh----hhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          17 AVQDLVGKYEILNYE----RDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~----~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      .|.+..|++|+++.+    ++.+.  .+++|++||++|++|+|+++||+++|.+|+++|||++|||+|++...|++++|+
T Consensus       262 s~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~  341 (441)
T 3e20_C          262 SYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNS  341 (441)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC-----
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECC
Confidence            456778999999865    35555  499999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCccccc---cCCcccccchHHH
Q psy9255          91 STSEDRVLHLTPEQEKD---KSHFTDKEMLTDL  120 (127)
Q Consensus        91 ~~g~~~v~~~~~~q~~~---~~~~~d~~~g~el  120 (127)
                      .|+ +.+++++|+|+.+   .+.|.|+.+|.++
T Consensus       342 ~~~-~~~~~~~~~~~~~~~~~~~~~c~~~g~~~  373 (441)
T 3e20_C          342 EGN-PVITYMTKEQEEKDSTNSFLLDKDTGAEM  373 (441)
T ss_dssp             ------CCEECSCTTTCCC--------------
T ss_pred             CCc-eEEEecCccccccccccccccCcccCccc
Confidence            985 5678899998655   5678888888753

>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A

Probab=99.72  E-value=5.2e-18  Score=143.40  Aligned_cols=103  Identities=57%  Similarity=0.879  Sum_probs=76.9

Q ss_pred             hhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255          17 AVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH   90 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~   90 (127)
                      .|.++.|++|++..+.    +.+.  .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++.+.|++++|+
T Consensus       257 s~g~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~  336 (437)
T 1dt9_A          257 SYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQ  336 (437)
T ss_dssp             SSCTTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcC
Confidence            4778889999999876    3444  499999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCccccccCCcccccchHH
Q psy9255          91 STSEDRVLHLTPEQEKDKSHFTDKEMLTD  119 (127)
Q Consensus        91 ~~g~~~v~~~~~~q~~~~~~~~d~~~g~e  119 (127)
                      .||.+.++++.|+++.+.+.|.|+..|.+
T Consensus       337 ~~g~~~~~~~~~~~~~~r~~~~~~~~g~~  365 (437)
T 1dt9_A          337 GTEEEKILYLTPEQEKDKSHFTDKETGQE  365 (437)
T ss_dssp             ------CCCBCTTCSSCCCCCC-------
T ss_pred             CCCceeeeeeccccccccccccCcccCcc
Confidence            99998888999887545566776666653

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}

Probab=99.49  E-value=3e-14  Score=119.47  Aligned_cols=69  Identities=22%  Similarity=0.340  Sum_probs=61.1

Q ss_pred             chhhhhhhHHHHHHHH------hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCcee
Q psy9255          15 YPAVQDLVGKYEILNY------ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQ   83 (127)
Q Consensus        15 ~~~~~d~~g~~e~~~~------~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~   83 (127)
                      .-.|.++.|++|+++.      +++.+.+  +++|++||++|++|+|+++||+++|++|+++|||++|||+|++...
T Consensus       238 d~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~  314 (364)
T 3obw_A          238 SVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSS  314 (364)
T ss_dssp             CCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSS
T ss_pred             eCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCccc
Confidence            3468899999999864      4566664  9999999999999999999999999999999999999999999653

>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2

Probab=99.48  E-value=1.6e-14  Score=105.56  Aligned_cols=51  Identities=14%  Similarity=0.318  Sum_probs=46.8

Q ss_pred             HhhhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecC
Q psy9255          30 YERDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL   80 (127)
Q Consensus        30 ~~~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL   80 (127)
                      ++++.+.  .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++
T Consensus        12 ~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l   64 (124)
T 1x52_A           12 RLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDEL   64 (124)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhh
Confidence            3455666  49999999999999999999999999999999999999999998

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}

Probab=99.46  E-value=5.9e-14  Score=117.36  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             chhhhhhhHHHHHHHHh------hhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255          15 YPAVQDLVGKYEILNYE------RDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI   82 (127)
Q Consensus        15 ~~~~~d~~g~~e~~~~~------~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~   82 (127)
                      ...|.++.|++|+++..      +|.+.+  +++|++||++|++| |++|||+++|++|+++|||++|||||++..
T Consensus       219 ~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r  293 (352)
T 3oby_A          219 DVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLL  293 (352)
T ss_dssp             CCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHH
T ss_pred             ECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchh
Confidence            45688999999998766      355554  99999999999999 999999999999999999999999999853

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}

Probab=99.44  E-value=1e-13  Score=115.43  Aligned_cols=69  Identities=22%  Similarity=0.428  Sum_probs=60.8

Q ss_pred             cchhhhhhhHHHHHHHHh------hhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255          14 RYPAVQDLVGKYEILNYE------RDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI   82 (127)
Q Consensus        14 ~~~~~~d~~g~~e~~~~~------~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~   82 (127)
                      -...|.++.|++|+++..      ++.+.+  +++|++||++|++|+|++|||+++|++|+++|||++|||+|++..
T Consensus       232 v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r  308 (357)
T 3j15_A          232 EDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLK  308 (357)
T ss_dssp             CCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHT
T ss_pred             EeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccc
Confidence            356788899999998753      455664  899999999999999999999999999999999999999999864

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*

Probab=99.41  E-value=2.4e-13  Score=114.23  Aligned_cols=66  Identities=18%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             hhhhhhhHHHHHHHH--h----hhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255          16 PAVQDLVGKYEILNY--E----RDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD   81 (127)
Q Consensus        16 ~~~~d~~g~~e~~~~--~----~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~   81 (127)
                      -.|.+..|++|++..  +    ++.+.  .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++-
T Consensus       251 ~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~  324 (386)
T 2vgn_A          251 CSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVL  324 (386)
T ss_dssp             CSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGG
T ss_pred             CCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhh
Confidence            367788999999998  4    35455  399999999999999999999999999999999999999999983

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.39  E-value=1.1e-13  Score=116.63  Aligned_cols=64  Identities=25%  Similarity=0.435  Sum_probs=57.2

Q ss_pred             hhhhhhHHHHHHHH------hhhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecC
Q psy9255          17 AVQDLVGKYEILNY------ERDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL   80 (127)
Q Consensus        17 ~~~d~~g~~e~~~~------~~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL   80 (127)
                      .|.+..|++|+++.      +++.+.  .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++
T Consensus       246 s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l  317 (390)
T 3mca_B          246 STGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL  317 (390)
T ss_dssp             SCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETT
T ss_pred             CCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEeccc
Confidence            56777899998766      345555  49999999999999999999999999999999999999999998

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}

Probab=99.34  E-value=5.7e-13  Score=110.70  Aligned_cols=65  Identities=15%  Similarity=0.321  Sum_probs=58.2

Q ss_pred             hhhhhhHHHHHHHH------hhhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255          17 AVQDLVGKYEILNY------ERDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD   81 (127)
Q Consensus        17 ~~~d~~g~~e~~~~------~~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~   81 (127)
                      .|.+..|++|++..      +++...  .+++|++||+++++|+|+++||+++|++|+++|||++|||+|++.
T Consensus       227 s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~  299 (358)
T 3agj_B          227 SMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL  299 (358)
T ss_dssp             SCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH
T ss_pred             CCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc
Confidence            57888999998776      345555  499999999999999999999999999999999999999999986

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2

Probab=99.30  E-value=2.2e-12  Score=107.31  Aligned_cols=84  Identities=14%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             hhhhhhhHHHHHHHHh--h----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce----e
Q psy9255          16 PAVQDLVGKYEILNYE--R----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI----Q   83 (127)
Q Consensus        16 ~~~~d~~g~~e~~~~~--~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~   83 (127)
                      -.|.++.|++|+++..  .    +.+.  .+++|++||++|++|  ++|||+++|++|+++|||++|||+|++..    .
T Consensus       221 ~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~~~  298 (347)
T 2qi2_A          221 ANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFRTEDGR  298 (347)
T ss_dssp             CSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHTSHHHH
T ss_pred             cCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEecccccchhHH
Confidence            3688899999999887  4    4444  499999999999999  99999999999999999999999999862    2


Q ss_pred             EEEEecCCCCceEEEEeC
Q psy9255          84 RYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        84 Rv~~k~~~~g~~~v~~~~  101 (127)
                      .+.-.+...|.++.++-+
T Consensus       299 ~L~e~~~~~G~~V~ivs~  316 (347)
T 2qi2_A          299 RSLSIAQTVGTRIHIVSV  316 (347)
T ss_dssp             HHHHHHHHHTCEEEEECT
T ss_pred             HHHHHHHHcCCEEEEECC
Confidence            222223344555555433

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}

Probab=99.25  E-value=1.1e-11  Score=102.50  Aligned_cols=84  Identities=25%  Similarity=0.350  Sum_probs=64.9

Q ss_pred             hhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-eeEEEEec
Q psy9255          17 AVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-IQRYVLKN   89 (127)
Q Consensus        17 ~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~~Rv~~k~   89 (127)
                      .|.+..|++|++..+.    +...  .+++|++||+++++|+|+++||+++|.+|+++|||++|||+|+-+ +..+.-..
T Consensus       256 s~~~~~g~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~rd~~~~L~e~a  335 (373)
T 3agk_A          256 AYQGLQGLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHESREDLEEWVEKA  335 (373)
T ss_dssp             CCCHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETTCTTHHHHHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCChhHHHHHHHHH
Confidence            5678889999999766    4444  499999999999999999999999999999999999999999821 11112223


Q ss_pred             CCCCceEEEEe
Q psy9255          90 HSTSEDRVLHL  100 (127)
Q Consensus        90 ~~~g~~~v~~~  100 (127)
                      ..+|.++.++-
T Consensus       336 ~~~G~~V~ivs  346 (373)
T 3agk_A          336 KSSGAQVIVVP  346 (373)
T ss_dssp             TTTTCEEEEEC
T ss_pred             HHcCCEEEEEC
Confidence            34566555543

>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.88  E-value=0.017  Score=39.45  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE-eCCcc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH-LTPEQ  104 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~-~~~~q  104 (127)
                      ++...|+++.|.++|.+|++.|-+..+++..|-+   ...+...|...+..++.| .+..+
T Consensus         9 la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~e   69 (99)
T 3j21_Z            9 KAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVE   69 (99)
T ss_dssp             HHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCG
T ss_pred             HHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHH
Confidence            4556799999999999999999999999999975   333355677667776666 55544

>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A

Probab=93.12  E-value=0.22  Score=35.27  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI   82 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~   82 (127)
                      |..+|.++.|.++|.+|++.|-+..++|+.|.+-
T Consensus        15 a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~   48 (121)
T 2lbw_A           15 ASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWP   48 (121)
T ss_dssp             HHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSC
T ss_pred             HHHcCCccccHHHHHHHHHcCCceEEEEeCCCCH
Confidence            5577999999999999999999999999998753

>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}

Probab=92.43  E-value=0.16  Score=34.73  Aligned_cols=57  Identities=7%  Similarity=0.006  Sum_probs=44.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCcc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPEQ  104 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~q  104 (127)
                      ++...|+++.|.++|.+|++.|-+..+|+..|-.   ...+...|...+..++.+.+..+
T Consensus        13 la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~e   72 (101)
T 3v7q_A           13 LANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAV   72 (101)
T ss_dssp             HHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHH
T ss_pred             hhhhhhhcccchhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechHHH
Confidence            5678899999999999999999999999999985   33345567766666666544433

>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2

Probab=91.93  E-value=0.18  Score=34.76  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=41.1

Q ss_pred             HHHHHHHHH--HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEEEE
Q psy9255          39 NNIGKYFDE--ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        39 klie~Ff~e--Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v~~   99 (127)
                      ++.++++..  ++...|+++.|.++|.+|++.|-+..+|+..|-.-   ..+...|...+..++.|
T Consensus         5 k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~   70 (105)
T 3u5e_c            5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYF   70 (105)
T ss_dssp             ----CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEC
T ss_pred             hHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            344444443  45678999999999999999999999999999852   22344555445544433

>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6

Probab=91.86  E-value=0.11  Score=35.69  Aligned_cols=50  Identities=14%  Similarity=0.167  Sum_probs=37.3

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEE
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRV   97 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v   97 (127)
                      ++...|+++.|.++|.+|++.|-+..+|++.|-.-   ..+...|...+..++
T Consensus        16 la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~   68 (104)
T 4a18_G           16 LVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIH   68 (104)
T ss_dssp             HHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEE
Confidence            34567999999999999999999999999999863   233344444344444

>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1

Probab=91.82  E-value=0.089  Score=38.98  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=44.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCcee----EEEEecCCCCceEEEEeCCcc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQ----RYVLKNHSTSEDRVLHLTPEQ  104 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~----Rv~~k~~~~g~~~v~~~~~~q  104 (127)
                      +|...|+++.|.++|.+|++.|-+..++|+.|.+-.    .+...|...|...+.+.++.+
T Consensus        44 lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~e  104 (144)
T 2jnb_A           44 QSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA  104 (144)
T ss_dssp             HHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHH
T ss_pred             HHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHH
Confidence            455779999999999999999999999999998532    356677777776555544433

>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A

Probab=91.73  E-value=0.44  Score=33.61  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceE
Q psy9255          38 FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDR   96 (127)
Q Consensus        38 ~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~   96 (127)
                      ..+-+++++.+..- |+++.|.++|.+|++.|-+..+||+.|.+    +..+...|...+...
T Consensus        14 ~~l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~   75 (120)
T 1xbi_A           14 EEIQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPY   75 (120)
T ss_dssp             HHHHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCE
Confidence            34555666666655 89999999999999999999999999873    233445555445543

>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}

Probab=91.65  E-value=0.23  Score=33.84  Aligned_cols=55  Identities=15%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCC
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      ++...|+++.|.++|.+|++.|-+..+|++.|-.   ...+...|...+..++.+.+.
T Consensus        12 la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~   69 (101)
T 3on1_A           12 LAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNR   69 (101)
T ss_dssp             HHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred             HHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH
Confidence            5667899999999999999999999999999985   233344566555555544333

>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A

Probab=91.43  E-value=0.35  Score=35.15  Aligned_cols=51  Identities=14%  Similarity=0.120  Sum_probs=38.4

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCcee----EEEEecCCCCceEEEE
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDIQ----RYVLKNHSTSEDRVLH   99 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~----Rv~~k~~~~g~~~v~~   99 (127)
                      |...|+++.|.++|.+|++.|-+..++|+.|.+-.    .+...|...|...+.+
T Consensus        27 A~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v   81 (134)
T 2ale_A           27 AANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFV   81 (134)
T ss_dssp             HHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEE
T ss_pred             HHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            55679999999999999999999999999987532    2344555555544443

>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}

Probab=90.47  E-value=0.55  Score=33.39  Aligned_cols=55  Identities=15%  Similarity=0.118  Sum_probs=41.9

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeCCc
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLTPE  103 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~~~  103 (127)
                      |...|+++.|.++|.+|++.|-+..++++.|..-    ..+...|...|...+...+..
T Consensus        26 A~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~   84 (122)
T 3o85_A           26 GASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKN   84 (122)
T ss_dssp             HHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHH
T ss_pred             HHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHH
Confidence            4567999999999999999999999999999842    344566777676644444433

>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...

Probab=90.44  E-value=0.59  Score=32.72  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~  101 (127)
                      |...|+++.|.++|.+|++.|-+..++++.|..    ...+...|...+...+...+
T Consensus        24 A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s   80 (120)
T 1vq8_F           24 ARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ   80 (120)
T ss_dssp             HHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESC
T ss_pred             HHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECC
Confidence            446689999999999999999999999999873    23445667766665433333

>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}

Probab=90.12  E-value=0.22  Score=34.53  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=39.3

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~   99 (127)
                      +...|+++.|.++|.+|++.|-+..+|++.|..   +..+...|...+..++.+
T Consensus        16 a~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~   69 (110)
T 3cpq_A           16 AVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQH   69 (110)
T ss_dssp             HHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEEC
T ss_pred             HHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            445699999999999999999999999999985   223345566556655555

>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A

Probab=89.58  E-value=0.57  Score=33.06  Aligned_cols=53  Identities=21%  Similarity=0.280  Sum_probs=39.1

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~  101 (127)
                      +...|+++.|.++|.+|++.|-+..+|++.|..    +..+...|...+...+...+
T Consensus        23 A~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~s   79 (124)
T 2fc3_A           23 ARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS   79 (124)
T ss_dssp             HHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESC
T ss_pred             HHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECC
Confidence            345589999999999999999999999999873    23345566655555433333

>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A

Probab=89.57  E-value=0.26  Score=33.49  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEEEE
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v~~   99 (127)
                      +...|+++.|.++|.+|++.|-+..++++.|-+.   ..+...|...+..++.|
T Consensus        11 a~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~   64 (101)
T 1w41_A           11 AQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEF   64 (101)
T ss_dssp             HHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            4456999999999999999999999999998652   22334555445554544

>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1

Probab=88.70  E-value=0.66  Score=32.44  Aligned_cols=49  Identities=20%  Similarity=0.289  Sum_probs=36.8

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEE
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRV   97 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v   97 (127)
                      |...|+++.|.++|.+|++.|-+..++++.|..    ...+...|...+...+
T Consensus        22 A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~   74 (119)
T 1rlg_A           22 VRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYI   74 (119)
T ss_dssp             HHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEE
T ss_pred             HHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEE
Confidence            345589999999999999999999999999873    2334455655455433

>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C

Probab=88.69  E-value=0.35  Score=34.65  Aligned_cols=34  Identities=26%  Similarity=0.491  Sum_probs=31.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD   81 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~   81 (127)
                      ++...|+++.|.++|.+|++.|-+..+||+.|..
T Consensus        21 lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das   54 (125)
T 3vi6_A           21 LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCP   54 (125)
T ss_dssp             HHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSC
T ss_pred             HHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCC
Confidence            4556799999999999999999999999999985

>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}

Probab=88.67  E-value=0.46  Score=31.38  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             hCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCC
Q psy9255          50 QDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      +.+|+++.|.++|.+|++.|-+..++|+.|.+   ...+...|...+...+.+.++
T Consensus         7 ~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk   62 (82)
T 3v7e_A            7 SQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESM   62 (82)
T ss_dssp             HHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred             HHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence            45699999999999999999999999999986   333455666656655555433

>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1

Probab=87.89  E-value=0.96  Score=32.57  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeC
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~  101 (127)
                      +...|+++.|.++|.+|++.|-+..+++..|..-    ..+...|...+...+.+.+
T Consensus        36 A~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~s   92 (135)
T 2aif_A           36 ACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS   92 (135)
T ss_dssp             HHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred             HHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECC
Confidence            5567999999999999999999999999998853    3345566655555544433

>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U

Probab=84.54  E-value=1.4  Score=31.53  Aligned_cols=60  Identities=15%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255          41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        41 ie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~  101 (127)
                      +.+++. .|...|+++.|..+|.+|++.|-+..++|..|-+    +..+...|...+...+.+-+
T Consensus        12 l~~~L~-~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~s   75 (126)
T 2xzm_U           12 LAKVIK-SSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPK   75 (126)
T ss_dssp             HHHHHT-TTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESC
T ss_pred             HHHHHH-HHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECC
Confidence            444443 3556689999999999999999999999999883    13345677776776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1dt9a2	146	d.79.3.2 (A:277-422) C-terminal domain of eukaryot	8e-27
d1x52a1	111	d.79.3.2 (A:8-118) Cell division protein pelota {H	2e-12
d2vgna3	104	d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi	2e-11
d2qi2a3	95	d.79.3.2 (A:244-338) Cell division protein pelota	1e-08

>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (236), Expect = 8e-27
 Identities = 58/80 (72%), Positives = 68/80 (85%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 11  IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 70

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDKSHFTDKE   + 
Sbjct: 71  TPEQEKDKSHFTDKETGQEH 90

>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 2e-12
 Identities = 6/40 (15%), Positives = 21/40 (52%)

Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
          +  ++  +  +  +  +G++   +A E  +++TL+  + L
Sbjct: 18 LDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDEL 57

>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 54.3 bits (131), Expect = 2e-11
 Identities = 7/40 (17%), Positives = 23/40 (57%)

Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
          + ++   +++D  K  +G ++ ++A E G++  L+  + +
Sbjct: 7  MDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKV 46

>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.9 bits (112), Expect = 1e-08
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
          + ++   + +D G Y  G + T  AL++G++  LI  + +
Sbjct: 11 VDEFLVAVKKDMGVY--GRDQTESALQMGALSDLIITDEM 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1dt9a2	146	C-terminal domain of eukaryotic peptide chain rele	99.87
d1x52a1	111	Cell division protein pelota {Human (Homo sapiens)	99.55
d2vgna3	104	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	99.52
d2qi2a3	95	Cell division protein pelota {Thermoplasma acidoph	99.33
d2bo1a1	100	Eukaryotic ribosomal protein L30 (L30e) {Archaeon	91.87
d1t0kb_	97	Eukaryotic ribosomal protein L30 (L30e) {Baker's y	91.79
d1w3ex1	98	Eukaryotic ribosomal protein L30 (L30e) {Archaeon	91.57
d1vqof1	119	Ribosomal protein L7ae {Archaeon Haloarcula marism	90.1
d2aifa1	115	Ribosomal protein L7ae {Cryptosporidium parvum [Ta	90.09
d2fc3a1	124	Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5	88.91
d1rlga_	113	Ribosomal protein L7ae {Archaeon Archaeoglobus ful	88.52
d2alea1	126	Small nuclear ribonucleoprotein-associated protein	87.69
d2ozba1	125	Spliceosomal 15.5kd protein {Human (Homo sapiens)	87.33
d1xbia1	115	Ribosomal protein L7ae {Archaeon Methanococcus jan	87.05

>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-23  Score=153.36  Aligned_cols=83  Identities=70%  Similarity=1.062  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecCCCCceEEEEeCCccccccCCcccccc
Q psy9255          37 LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKEM  116 (127)
Q Consensus        37 ~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~~~g~~~v~~~~~~q~~~~~~~~d~~~  116 (127)
                      .+++|++||++|++|+|+++||+++|++|++||||++|||||+|...|++++|+.|+++.++++.+.++.++.+|.+++.
T Consensus         7 Ekklv~~f~~el~~d~g~a~YG~~ev~~ALe~GAVetLLise~L~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (146)
T d1dt9a2           7 EKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKET   86 (146)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC----
T ss_pred             HHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEeeeeecccceEEEEcCCCCceEEEEeCcccccccccccCccc
Confidence            49999999999999999999999999999999999999999999999999999999999999999999888888888877


Q ss_pred             hHH
Q psy9255         117 LTD  119 (127)
Q Consensus       117 g~e  119 (127)
                      |.+
T Consensus        87 ~~~   89 (146)
T d1dt9a2          87 GQE   89 (146)
T ss_dssp             ---
T ss_pred             ccc
Confidence            765

>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-15  Score=108.82  Aligned_cols=51  Identities=14%  Similarity=0.311  Sum_probs=47.1

Q ss_pred             hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255          31 ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD   81 (127)
Q Consensus        31 ~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~   81 (127)
                      ++|++.+  +++|++||++|++|+|+++||.++|++|+++|||++|||||++.
T Consensus         6 L~d~k~~~E~k~~e~f~~~l~k~~~~~~YG~~ev~~Ale~GAV~~LLisd~l~   58 (111)
T d1x52a1           6 LSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELF   58 (111)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             HhHhHHHHHHHHHHHHHHHHhCCCCeEEECHHHHHHHHHcCCCcEEEEecccc
Confidence            4566664  89999999999999999999999999999999999999999983

>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.52  E-value=5.6e-15  Score=103.69  Aligned_cols=45  Identities=16%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255          37 LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD   81 (127)
Q Consensus        37 ~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~   81 (127)
                      .+++|++||.+|++|+|+++||.++|++|+++|||++|||||++.
T Consensus         3 E~~~~e~f~~~l~kd~~~~~YG~~~v~~A~e~gAv~~LlIsd~l~   47 (104)
T d2vgna3           3 EIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVL   47 (104)
T ss_dssp             HHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCceEEEEecccc
Confidence            478999999999999999999999999999999999999999984

>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=6.4e-13  Score=92.22  Aligned_cols=64  Identities=14%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255          36 LLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        36 ~~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~  101 (127)
                      ..+++|++||++|++|  +++||.++|++|++||||++|||||++.    +.++.-....+|..++++-+
T Consensus         6 ~e~~~ie~f~~~l~kd--~~~YG~~eV~~A~e~GAVe~Llisd~l~r~~~~~~l~~~~~~~g~~v~iis~   73 (95)
T d2qi2a3           6 RDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFRTEDGRRSLSIAQTVGTRIHIVSV   73 (95)
T ss_dssp             HHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHTSHHHHHHHHHHHHHTCEEEEECT
T ss_pred             HHHHHHHHHHHHHhcC--CCEECHHHHHHHHHcCCCcEEEEechhhcchhHHHHHHHHHHcCCEEEEECC
Confidence            3589999999999986  4799999999999999999999999983    33433344445665555533

>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=91.87  E-value=0.066  Score=35.14  Aligned_cols=51  Identities=20%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~   99 (127)
                      +..+|+++.|.++|.+|++.|-+..+|++.|..   ...+...|...+.....|
T Consensus        10 a~kaGklv~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~vp~~~~   63 (100)
T d2bo1a1          10 VIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYARLSGTPVYEF   63 (100)
T ss_dssp             HHHHSEEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHhCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence            445699999999999999999999999999985   233344565555544444

>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.79  E-value=0.075  Score=34.60  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~   99 (127)
                      ++..+|++++|.++|.++++.|-+..++++.|..   ..++...|...+..++.+
T Consensus         8 la~Kagklv~G~~~v~k~i~~gkaklVilA~D~~~~~~~~i~~~~~~~~vp~~~~   62 (97)
T d1t0kb_           8 LVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYF   62 (97)
T ss_dssp             HHHHSSCEEESHHHHHHHHHHTCCSEEEECTTCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHhCCeeEcHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCceEEE
Confidence            4556799999999999999999999999999985   333344555545544444

>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=91.57  E-value=0.069  Score=35.03  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~   99 (127)
                      .+..+|++++|.++|.+|++.|-+..++|+.|..   ...+...|...+..++.|
T Consensus         9 ~a~kaGklv~G~~~v~kal~~gkaklVilA~D~~~~~~~~i~~~c~~~~Ip~~~~   63 (98)
T d1w3ex1           9 KAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIAVYEF   63 (98)
T ss_dssp             HHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHhCCEEEcHHHHHHHHHcCCccEEEEECCCCHHHHHHHHHHHHhcCCCeEEE
Confidence            3455799999999999999999999999999985   333345566556655555

>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.10  E-value=0.46  Score=31.81  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-e---eEEEEecCCCCceEEEEeCC
Q psy9255          41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-I---QRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        41 ie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~---~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      |-+++. ++..+|++++|.++|.+|++.|-+..+||..|.. .   ..+...|...|...+...+.
T Consensus        16 i~~ll~-~a~kagkl~~G~~~v~k~l~~gka~lVilA~D~~p~~~~~~l~~lc~~~~Vp~~~~~tk   80 (119)
T d1vqof1          16 ALEALE-VARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQ   80 (119)
T ss_dssp             HHHHHH-HHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTTCCEEEESCH
T ss_pred             HHHHHH-HHHHcCCccccHHHHHHHHHcCCceEEEEECCCChHHHHHHHHHHHhcCCCCEEEECCH
Confidence            344444 4556799999999999999999999999999984 2   23345677767665544433

>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Cryptosporidium parvum [TaxId: 5807]

Probab=90.09  E-value=0.15  Score=33.96  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-e---eEEEEecCCCCceEEEEeCC
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD-I---QRYVLKNHSTSEDRVLHLTP  102 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~---~Rv~~k~~~~g~~~v~~~~~  102 (127)
                      +|...|+++.|..+|.+|++.|-+.-++|..|.. .   ..+...|...+...+.+.++
T Consensus        18 ~A~~~~~l~~G~~~v~k~i~~g~a~lViiA~D~~p~~~~~~i~~~c~~~~ip~~~~~sk   76 (115)
T d2aifa1          18 QACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSK   76 (115)
T ss_dssp             HHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCH
T ss_pred             HHHHcCCeeecHHHHHHHHHcCCCcEEEEeCCCCchhHHHHHHHHHhcCCCCEEEeCch
Confidence            4556799999999999999999999999999984 2   22345677656654444333

>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.91  E-value=0.46  Score=31.99  Aligned_cols=58  Identities=19%  Similarity=0.226  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-ee---EEEEecCCCCceEE
Q psy9255          39 NNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-IQ---RYVLKNHSTSEDRV   97 (127)
Q Consensus        39 klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~~---Rv~~k~~~~g~~~v   97 (127)
                      +-+.+++... ...|+++.|..+|.+|++.|-+..++|..|.. ..   .+...|...+...+
T Consensus        14 ~~i~~~L~~a-~k~gkl~~G~~~v~k~i~~~ka~lVvlA~D~~p~~~~~~l~~~c~~~~Vp~~   75 (124)
T d2fc3a1          14 EKAYEAVKRA-RETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYV   75 (124)
T ss_dssp             HHHHHHHHHH-HHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHH-HHcCCEeecHHHHHHHHHcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCcEE
Confidence            3444555543 44589999999999999999999999999984 21   23345555455433

>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.52  E-value=0.19  Score=33.29  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-e---eEEEEecCCCCceEEEEeC
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD-I---QRYVLKNHSTSEDRVLHLT  101 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~---~Rv~~k~~~~g~~~v~~~~  101 (127)
                      ++...|++++|.++|.+|++.|-+.-++|..|.. .   ..+...|...+...+.+.+
T Consensus        15 ~a~~agkl~~G~~~v~k~l~~~ka~lViiA~D~~p~~~~~~i~~lc~~~~vp~~~~~s   72 (113)
T d1rlga_          15 KVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKS   72 (113)
T ss_dssp             HHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESC
T ss_pred             HHHHhCCccccHHHHHHHHHcCCceEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEeCC
Confidence            4567799999999999999999999999999974 2   2234456655655444333

>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Small nuclear ribonucleoprotein-associated protein 1, Snu13p
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=87.69  E-value=0.48  Score=32.29  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             hhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eE-EEEecCCCCceEEE
Q psy9255          49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QR-YVLKNHSTSEDRVL   98 (127)
Q Consensus        49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~R-v~~k~~~~g~~~v~   98 (127)
                      +...+.+.+|.++|.+|++.|-+.-++|..|.+-   .. +...|...+...+.
T Consensus        27 a~~~~~l~~G~~ev~K~i~~g~a~lVviA~D~~p~~~~~~l~~lc~~~~Ip~~~   80 (126)
T d2alea1          27 AANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF   80 (126)
T ss_dssp             HHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred             HHHcCCcccCHHHHHHHHHcCCCeEEEEeCCCChHHHHHHHHHHHhccCCCEEE
Confidence            4456889999999999999999999999999842   22 23455544444333

>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Spliceosomal 15.5kd protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.52  Score=31.94  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=38.5

Q ss_pred             HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-eeEE---EEecCCCCceEEEEe
Q psy9255          48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD-IQRY---VLKNHSTSEDRVLHL  100 (127)
Q Consensus        48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~~Rv---~~k~~~~g~~~v~~~  100 (127)
                      .+...|.+++|.++|.++++.|-+.-++|..|.. ....   ...|..-+...+.+.
T Consensus        25 ~a~~~~~l~~G~~ev~k~i~~gka~lViiA~D~~p~~~~~~l~~lc~~~~IP~~~v~   81 (125)
T d2ozba1          25 QSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVR   81 (125)
T ss_dssp             HHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGSTHHHHHHHHHTCCEEEES
T ss_pred             HHHHcCCcccChHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHhcCCceEEEEC
Confidence            4556789999999999999999999999999985 2222   234555455444333

>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.05  E-value=0.71  Score=30.56  Aligned_cols=60  Identities=13%  Similarity=0.089  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-e---eEEEEecCCCCceEEEE
Q psy9255          39 NNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-I---QRYVLKNHSTSEDRVLH   99 (127)
Q Consensus        39 klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~---~Rv~~k~~~~g~~~v~~   99 (127)
                      ++.++.+.. ++..|..+.|.++|.+|++.|-+.-++|..|-+ .   ..+...|...|...+.+
T Consensus        11 e~~~~~l~~-~~ka~~l~~G~~~v~kai~~~~a~lVilA~D~~p~~~~~~l~~lc~~~~Vp~~~v   74 (115)
T d1xbia1          11 EIQKELLDA-VAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYV   74 (115)
T ss_dssp             HHHHHHHHH-HHTCSEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHH-HHHhCCccccHHHHHHHHHcCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence            344555544 445689999999999999999999999999874 2   22345566656654433