Psyllid ID: psy9269

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALLTTLPLATSR
Secondary Structure (PSIPRED)
cHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccHHHHHHcccHHHHHHHHHccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccEccccHHHHHHEEEEEHHHHHHHHHHcccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
eryeklvegrepveSSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVlsnpghygfpaglsSEELQSRLqgknsglcmrelnglsrynlitmndgfdilptvtgSIMAKFCIGFNTMVAFTGWEKAQKDLALLttlplatsr
Flexible Loop (DISEMBL)
eryeklvegrepvesslHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALlttlplatsr
Low Complexity Region (SEG)
ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDlallttlplatSR
Disordered region (IsUnstruct)
********************LVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAG***************GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALLTTL******
Disordered Region (DISOPRED)
ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALLTTLPLAT**
Disordered Region (DISEMBL)
***************SLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALLTTLPLATSR
Disordered Region (DISPRO)
ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALLTTLPLATS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFTGWEKAQKDLALLTTLPLATSR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
A2PYH4	1435	Probable ATP-dependent DN	yes	N/A	0.824	0.085	0.484	6e-32
A2RUV5	1336	Probable ATP-dependent DN	yes	N/A	0.824	0.091	0.484	1e-30
P51979	1187	ATP-dependent DNA helicas	yes	N/A	0.952	0.118	0.351	2e-13
Q9VUV9	2142	Putative U5 small nuclear	yes	N/A	0.810	0.056	0.312	2e-11
O75643	2136	U5 small nuclear ribonucl	no	N/A	0.75	0.051	0.344	3e-11
Q54G57	2195	Activating signal cointeg	yes	N/A	0.452	0.030	0.430	1e-10
E7F8F4	1534	Activating signal cointeg	no	N/A	0.864	0.083	0.285	6e-09
O60072	1935	Putative helicase mug81 O	yes	N/A	0.885	0.067	0.311	2e-08
Q9U2G0	2145	Putative U5 small nuclear	yes	N/A	0.810	0.055	0.322	3e-08
P53327	1967	Antiviral helicase SLH1 O	no	N/A	0.378	0.028	0.409	8e-08

>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2 SV=2

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 91/126 (72%), Gaps = 4/126 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           ++Y +++  R+ VESSLHRHL+EHLN+EIVL TI+DV++AVEW+RST  ++R L NP HY
Sbjct: 676 DKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHY 735

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF +GL+ + ++++LQ     LC++ LN LS  +LI M++G +  PT  G +MA + I F
Sbjct: 736 GFASGLNKDGIEAKLQ----ELCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITF 791

Query: 121 NTMVAF 126
            T+  F
Sbjct: 792 ETVKKF 797

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis GN=hfm1 PE=2 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 4/126 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           E+Y  +++G + +ESSLH+HLVEHLN+EI L TI+DV VA+EW+RSTF ++R L NP +Y
Sbjct: 545 EKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFLYIRALKNPAYY 604

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF  GL    ++++LQ     LC++ LN LS   LI M++  +  PT TG +MA + I F
Sbjct: 605 GFSEGLDKIGIEAKLQ----ELCLKNLNDLSSLGLIKMDEEINFKPTETGKLMALYYIAF 660

Query: 121 NTMVAF 126
           NT   F
Sbjct: 661 NTAKLF 666

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 7/148 (4%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           + YE L+ G + +ESSLH +L+EHL +E  L+T+  +  AV WLR+TFF+VR   NP  Y
Sbjct: 514 QTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAY 573

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
                  S    S    + +  C   L+ L +  +I +++G +   T  G+ M +  I F
Sbjct: 574 QEVNRYVS--FHSVEDSQINQFCQYLLDTLVKVKIIDISNG-EYKSTAYGNAMTRHYISF 630

Query: 121 NTMVAFTGWEKAQKDLALLTTLP-LATS 147
            +M  F     A+K L+L   L  LATS
Sbjct: 631 ESMKQFIN---AKKFLSLQGILNLLATS 655

DNA-dependent ATPase. Required in the control of double strand breaks transition and crossover during meiosis. Unwinds DNA in the 3' TO 5' direction. Prefers single-stranded DNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 3    YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
            ++K +    P+ES L   + +H N+E+V KTI +   AV++L  TF + R+  NP +Y  
Sbjct: 1713 FKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL 1772

Query: 63   PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNT 122
              G++   L   L    S L    L+ L +   I++ D  D LP   G I A + I + T
Sbjct: 1773 -QGVTHRHLSDHL----SELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTT 1827

Query: 123  MVAFT 127
            +  F+
Sbjct: 1828 IELFS 1832

Putative RNA helicase involved in the second step of RNA splicing.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 12   PVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEEL 71
            PVES L   + +H N+EIV KTI +   AV++L  TF + R+  NP +Y    G+S   L
Sbjct: 1723 PVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL-QGISHRHL 1781

Query: 72   QSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAFT 127
               L    S L  + L+ L +   I++ D  D+ P   G I A + I + T+  F+
Sbjct: 1782 SDHL----SELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFS 1833

Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           + Y  L+    P+ES    +L +HLN+EIVL T+S+V+ AV WL  T+ F+R+L NP  Y
Sbjct: 876 DHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVY 935

Query: 61  GFPAGLSSEELQ 72
           G P+   S++ Q
Sbjct: 936 GIPSSQRSKDPQ 947

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio GN=ascc3 PE=3 SV=2

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 3   YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
           Y  L+  + P+ES   + L ++LN+EI L T+++V  AV WL  T+ +VR+ +NP  YG 
Sbjct: 474 YLTLLTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSYTYLYVRMRANPLAYGI 533

Query: 63  PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMND--GFDILPTVTGSIMAKFCIGF 120
                + ++  +L+     L +     L +  +I  ++  G+    T  G   + F I +
Sbjct: 534 --NHKAYQMDPQLELYRKELVVESGRKLDKARMIRFDERTGY-FASTDLGRTASHFYIKY 590

Query: 121 NTMVAFTGWEKAQ 133
           NT+ +F     AQ
Sbjct: 591 NTIESFNELFNAQ 603

3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkhb3, enabling alkhb3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug81 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 3    YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
            Y+  +    PVES LH+ L  HLN+EI   TI  +  A+++L  T+F+ RV  NP +YG 
Sbjct: 1520 YKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYG- 1578

Query: 63   PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNT 122
                +  + Q  +    S L +   N L +   I   +     PT  G I++ + +   T
Sbjct: 1579 ----ADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTT 1634

Query: 123  MVAFTG--WEKAQKDLAL 138
            +  F     E A+ DLAL
Sbjct: 1635 IRNFVQKITENAEFDLAL 1652

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 3   YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
           Y  L+  + PVES +   L + LN+E+VL T+S VS A  WL  TF FVR+L NP  YG 
Sbjct: 872 YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931

Query: 63  PAGLSSEEL---QSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIG 119
               +  +    Q R    ++   + +  GL +Y+      G  I  T  G I + F   
Sbjct: 932 THEQARADPLLEQRRADLIHTACVLLDKAGLIKYD---KRSGI-IQATELGRIASHFYCT 987

Query: 120 FNTMVAF 126
           + +M  +
Sbjct: 988 YESMQTY 994

Putative RNA helicase involved in the second step of RNA splicing.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLH1 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           + Y  L+  + P+ES     LV++LN+EI L ++++V  A+EWL  T+ FVR+  NP  Y
Sbjct: 691 DHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTY 750

Query: 61  G 61
           G
Sbjct: 751 G 751

Together with SKI2, represses the translation of non-poly(A) mRNAs. May block translation by inhibiting translation initiation factor 5B (FUN12) action on mRNAs lacking a 3' poly(A) structure. Involved in antiviral defense, preventing L-A dsRNA virus propagation by specifically blocking translation of viral mRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
320166836	1619	DEAD/DEAH box helicase [Capsaspora owcza	0.959	0.087	0.517	1e-36
410924604	1542	PREDICTED: probable ATP-dependent DNA he	0.831	0.079	0.519	9e-33
348501027	1330	PREDICTED: probable ATP-dependent DNA he	0.831	0.092	0.519	6e-32
432911899	975	PREDICTED: probable ATP-dependent DNA he	0.831	0.126	0.496	6e-32
449508308	1175	PREDICTED: probable ATP-dependent DNA he	0.817	0.102	0.512	5e-31
405971663	1057	Putative ATP-dependent DNA helicase HFM1	0.831	0.116	0.492	6e-31
326664860	1484	PREDICTED: probable ATP-dependent DNA he	0.831	0.082	0.472	7e-31
449268070	966	putative ATP-dependent DNA helicase HFM1	0.831	0.127	0.488	8e-31
194378286	831	unnamed protein product [Homo sapiens]	0.824	0.146	0.484	2e-30
326925073	1160	PREDICTED: probable ATP-dependent DNA he	0.824	0.105	0.492	3e-30

>gi|320166836|gb|EFW43735.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/147 (51%), Positives = 104/147 (70%), Gaps = 5/147 (3%)

Query: 2   RYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYG 61
           +YE L+ GREP+ES+LHRHL+EHLN+EIVL+TISDVS+A++WL+STFFFVRV  NP HYG
Sbjct: 727 KYESLLSGREPIESNLHRHLIEHLNAEIVLQTISDVSIALDWLKSTFFFVRVKKNPTHYG 786

Query: 62  FPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMN-DGFDILPTVTGSIMAKFCIGF 120
             AG+   +L+S LQ     +C++ L  L+   LITM+ DGF +LPT  G++MA++C+ F
Sbjct: 787 LQAGMPDRQLESALQ----SMCLQHLKQLADCRLITMDEDGFGLLPTHAGTLMARYCVLF 842

Query: 121 NTMVAFTGWEKAQKDLALLTTLPLATS 147
            TM  F    K +  L  L  L  A++
Sbjct: 843 KTMHMFITQAKPESTLEHLIELLAASA 869

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|410924604|ref|XP_003975771.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Takifugu rubripes]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 92/127 (72%), Gaps = 4/127 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           ++Y  L+ G E +ESSLH HLVEHLN+EIVL+TISDV++A++W+RSTF ++R L NP HY
Sbjct: 528 DKYMNLMNGVEIIESSLHSHLVEHLNAEIVLQTISDVNMALDWIRSTFLYIRALKNPSHY 587

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GFP  L    ++++LQ     LC+R LN LS   LI M++  +I PT TG +MA++CI F
Sbjct: 588 GFPPSLDRCGIEAKLQ----ELCLRNLNSLSSIGLIDMDEDINIKPTETGKLMARYCIAF 643

Query: 121 NTMVAFT 127
           +TM  F+
Sbjct: 644 DTMNLFS 650

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348501027|ref|XP_003438072.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Oreochromis niloticus]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 91/127 (71%), Gaps = 4/127 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           E+Y KL+ G E +ESSLH HLVEHLN+EIVL+TISDV +A++W+RSTF ++R L NP HY
Sbjct: 632 EKYLKLMNGIEVIESSLHSHLVEHLNAEIVLQTISDVKMALDWIRSTFLYIRALKNPTHY 691

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF A L    ++++LQ     LC++ LN LS   LI+M++   I PT  G +MA++CI F
Sbjct: 692 GFSADLDRCGIEAKLQ----ELCLKNLNSLSSVGLISMDEDITIKPTEAGRLMARYCIAF 747

Query: 121 NTMVAFT 127
           +TM  F+
Sbjct: 748 DTMKQFS 754

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432911899|ref|XP_004078775.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Oryzias latipes]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 93/127 (73%), Gaps = 4/127 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           ++Y KL+ G E +ESSLH HLVEHLN+EIVL+TISDV++A++W+RSTF ++R L NP HY
Sbjct: 440 DKYMKLMNGVEVIESSLHGHLVEHLNAEIVLQTISDVNMALDWIRSTFLYIRALKNPTHY 499

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF A      ++++LQ     LC++ LN LS  +LI+M++  +I PT  G +MA++C+ F
Sbjct: 500 GFTADFDKYGIEAQLQ----ELCLKNLNSLSSIDLISMDEDINIKPTEAGRLMARYCVAF 555

Query: 121 NTMVAFT 127
           +TM  F+
Sbjct: 556 DTMKQFS 562

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449508308|ref|XP_002190786.2| PREDICTED: probable ATP-dependent DNA helicase HFM1 [Taeniopygia guttata]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%), Gaps = 4/125 (3%)

Query: 2   RYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYG 61
           RY +++ G + +ESSLHRHLVEHLN+EIVL T++DVSVA+EW+RSTF ++R L NP HYG
Sbjct: 491 RYIQMLNGADIIESSLHRHLVEHLNAEIVLHTVTDVSVALEWIRSTFLYIRALKNPTHYG 550

Query: 62  FPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFN 121
           F +GL    ++++LQ     LC++ LN LS ++LI M++  +  PT TG +MA + I FN
Sbjct: 551 FSSGLDKVGIEAKLQ----ELCLKNLNDLSSFDLIRMDEANNFKPTDTGRLMAWYYIAFN 606

Query: 122 TMVAF 126
           T+  F
Sbjct: 607 TVKQF 611

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405971663|gb|EKC36488.1| Putative ATP-dependent DNA helicase HFM1 [Crassostrea gigas]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 94/130 (72%), Gaps = 7/130 (5%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           ++YE LV G + +ESSLH++L+EHLN+EIVL TI+D+S+A+EW+R TF ++RV+ NP HY
Sbjct: 624 QKYESLVNGTQLIESSLHKNLIEHLNAEIVLHTINDISIAMEWIRYTFLYIRVMKNPKHY 683

Query: 61  G--FPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMND-GFDILPTVTGSIMAKFC 117
           G   P G++ E+++ RLQ     LCMR LN L+ + +ITM+D   D+  T  G +MA++C
Sbjct: 684 GKCMPLGMNREQIEKRLQ----ELCMRNLNLLNTHGMITMDDETIDVKSTEPGKLMARYC 739

Query: 118 IGFNTMVAFT 127
           I F TM  F+
Sbjct: 740 IAFETMRRFS 749

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|326664860|ref|XP_001919555.3| PREDICTED: probable ATP-dependent DNA helicase HFM1 [Danio rerio]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 93/127 (73%), Gaps = 4/127 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           ++Y   + G + +ESSLH +LVEHLN+EIVL TISDV++A++W+RSTF ++R L NP HY
Sbjct: 674 DKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHY 733

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GFP  +    ++++LQ     LC++ LN L+ +NLITM++  +I PT TG +MA++C+ F
Sbjct: 734 GFPPEVDKCGIETKLQ----ELCLKNLNSLASFNLITMDEDINIKPTETGKLMARYCVAF 789

Query: 121 NTMVAFT 127
           +T+  F+
Sbjct: 790 DTVKQFS 796

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449268070|gb|EMC78940.1| putative ATP-dependent DNA helicase HFM1, partial [Columba livia]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 93/127 (73%), Gaps = 4/127 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           E+Y +++ G + +ESSLHRHLVEHLN+EIVL T++DV+VA+EW+RSTF ++R L NP HY
Sbjct: 408 EKYIQMLNGADIIESSLHRHLVEHLNAEIVLHTVTDVTVALEWIRSTFLYIRALKNPTHY 467

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF +GL    ++++LQ     LC++ LN LS ++LI M++  +  PT TG +MA + I F
Sbjct: 468 GFSSGLDKTGIEAKLQ----ELCLKNLNDLSSFDLIRMDEANNFKPTETGRLMAWYYIAF 523

Query: 121 NTMVAFT 127
           +T+  F+
Sbjct: 524 DTVKQFS 530

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194378286|dbj|BAG57893.1| unnamed protein product [Homo sapiens]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 91/126 (72%), Gaps = 4/126 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           ++Y +++  R+ VESSLHRHL+EHLN+EIVL TI+DV++AVEW+RST  ++R L NP HY
Sbjct: 360 DKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHY 419

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF +GL+ + ++++LQ     LC++ LN LS  +LI M++G +  PT  G +MA + I F
Sbjct: 420 GFASGLNKDGIEAKLQ----ELCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITF 475

Query: 121 NTMVAF 126
            T+  F
Sbjct: 476 ETVKKF 481

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326925073|ref|XP_003208746.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Meleagris gallopavo]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 91/126 (72%), Gaps = 4/126 (3%)

Query: 1   ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
           E+Y +++ G + +ESSLH+HLVEHLN+EI L+T++DV+VA+EW+RSTF ++R L NP HY
Sbjct: 489 EKYIQMLNGADIIESSLHKHLVEHLNAEIALRTVTDVTVALEWIRSTFLYIRALKNPTHY 548

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
           GF AGL    ++++LQ     LC++ LN LS +NLI M+   +  PT TG +MA + I F
Sbjct: 549 GFSAGLDKIGIEAKLQ----ELCLKNLNDLSSFNLIRMDKENNFKPTETGRLMAWYYIAF 604

Query: 121 NTMVAF 126
           +T+  F
Sbjct: 605 DTVKQF 610

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
ZFIN|ZDB-GENE-061207-43	1049	hfm1 "HFM1, ATP-dependent DNA	0.831	0.117	0.472	6.8e-29
UNIPROTKB|A6NGI5	1114	HFM1 "Probable ATP-dependent D	0.824	0.109	0.484	5.4e-28
UNIPROTKB|A2PYH4	1435	HFM1 "Probable ATP-dependent D	0.824	0.085	0.484	8e-28
UNIPROTKB|F1MFR1	1438	HFM1 "Uncharacterized protein"	0.824	0.084	0.468	9.3e-27
UNIPROTKB|F1S4E9	1438	HFM1 "Uncharacterized protein"	0.824	0.084	0.468	9.3e-27
UNIPROTKB|E2RA34	1437	HFM1 "Uncharacterized protein"	0.824	0.084	0.460	6.6e-26
UNIPROTKB|E2R5U9	1466	HFM1 "Uncharacterized protein"	0.824	0.083	0.460	6.8e-26
RGD|1584010	954	Hfm1 "HFM1, ATP-dependent DNA	0.824	0.127	0.452	2.5e-25
TAIR|locus:2089144	1133	RCK "ROCK-N-ROLLERS" [Arabidop	0.790	0.103	0.401	1.1e-18
UNIPROTKB|G4N3Z7	1508	MGG_05900 "Uncharacterized pro	0.790	0.077	0.392	1.1e-14

ZFIN|ZDB-GENE-061207-43 hfm1 "HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 6.8e-29, P = 6.8e-29
 Identities = 60/127 (47%), Positives = 93/127 (73%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             ++Y   + G + +ESSLH +LVEHLN+EIVL TISDV++A++W+RSTF ++R L NP HY
Sbjct:   406 DKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHY 465

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GFP  +    ++++LQ     LC++ LN L+ +NLITM++  +I PT TG +MA++C+ F
Sbjct:   466 GFPPEVDKCGIETKLQE----LCLKNLNSLASFNLITMDEDINIKPTETGKLMARYCVAF 521

Query:   121 NTMVAFT 127
             +T+  F+
Sbjct:   522 DTVKQFS 528

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|A6NGI5 HFM1 "Probable ATP-dependent DNA helicase HFM1" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 5.4e-28, P = 5.4e-28
 Identities = 61/126 (48%), Positives = 91/126 (72%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             ++Y +++  R+ VESSLHRHL+EHLN+EIVL TI+DV++AVEW+RST  ++R L NP HY
Sbjct:   355 DKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHY 414

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++++LQ     LC++ LN LS  +LI M++G +  PT  G +MA + I F
Sbjct:   415 GFASGLNKDGIEAKLQE----LCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITF 470

Query:   121 NTMVAF 126
              T+  F
Sbjct:   471 ETVKKF 476

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

UNIPROTKB|A2PYH4 HFM1 "Probable ATP-dependent DNA helicase HFM1" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 8.0e-28, P = 8.0e-28
 Identities = 61/126 (48%), Positives = 91/126 (72%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             ++Y +++  R+ VESSLHRHL+EHLN+EIVL TI+DV++AVEW+RST  ++R L NP HY
Sbjct:   676 DKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHY 735

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++++LQ     LC++ LN LS  +LI M++G +  PT  G +MA + I F
Sbjct:   736 GFASGLNKDGIEAKLQE----LCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITF 791

Query:   121 NTMVAF 126
              T+  F
Sbjct:   792 ETVKKF 797

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1MFR1 HFM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 9.3e-27, P = 9.3e-27
 Identities = 59/126 (46%), Positives = 89/126 (70%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             E+Y +++   + +ESSLHRHL+EHLN+EIVL TI++V++A+EW+RST  ++R L NP HY
Sbjct:   679 EKYIQMLACSDTIESSLHRHLIEHLNAEIVLHTITNVNIALEWIRSTLLYIRALKNPSHY 738

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++S+LQ     LC++ LN LS  NLI M++  +  PT  G +MA + I F
Sbjct:   739 GFASGLNKDGIESKLQE----LCLKNLNDLSSLNLIKMDEDINFKPTEAGRLMAWYYITF 794

Query:   121 NTMVAF 126
              T+  F
Sbjct:   795 ETVKKF 800

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1S4E9 HFM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 9.3e-27, P = 9.3e-27
 Identities = 59/126 (46%), Positives = 89/126 (70%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             E+Y +++   + VESSLHRHL+EHLN+EIVL TI+DV++A+EW+RST  ++R L NP HY
Sbjct:   678 EKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHY 737

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++S+LQ     LC++ LN LS  +LI M++  +  PT  G +MA + + F
Sbjct:   738 GFASGLNKDGIESKLQE----LCLKNLNDLSSLDLIKMDEDINFKPTEAGRLMAWYYVTF 793

Query:   121 NTMVAF 126
              T+  F
Sbjct:   794 ETVKKF 799

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RA34 HFM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 58/126 (46%), Positives = 89/126 (70%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             E+Y +++   + VESSLHRHL+EHLN+EIVL TI+DV++A+EW+RST  ++R L NP HY
Sbjct:   677 EKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHY 736

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++++LQ     LC++ L+ LS  +LI M++  +  PT  G +MA + I F
Sbjct:   737 GFASGLNKDGIEAKLQE----LCLKNLHDLSSLDLIRMDEDVNFKPTEAGRLMAWYYITF 792

Query:   121 NTMVAF 126
              T+  F
Sbjct:   793 ETVKKF 798

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R5U9 HFM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 6.8e-26, P = 6.8e-26
 Identities = 58/126 (46%), Positives = 89/126 (70%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             E+Y +++   + VESSLHRHL+EHLN+EIVL TI+DV++A+EW+RST  ++R L NP HY
Sbjct:   677 EKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHY 736

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++++LQ     LC++ L+ LS  +LI M++  +  PT  G +MA + I F
Sbjct:   737 GFASGLNKDGIEAKLQE----LCLKNLHDLSSLDLIRMDEDVNFKPTEAGRLMAWYYITF 792

Query:   121 NTMVAF 126
              T+  F
Sbjct:   793 ETVKKF 798

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1584010 Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 299 (110.3 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 57/126 (45%), Positives = 87/126 (69%)

Query:     1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
             E+Y +++   + VESSLHRHL+EHLN+EIVL TI+DVS+A++W+RST  ++R L NP HY
Sbjct:   406 EKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDVSIALDWIRSTLLYIRALKNPSHY 465

Query:    61 GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
             GF +GL+ + ++++LQ     LC++ L  LS  +LI M++  +   T  G +MA + I F
Sbjct:   466 GFISGLNKDGIEAKLQE----LCLKNLKDLSSLDLIKMDEDLNFRSTEAGRLMAWYYITF 521

Query:   121 NTMVAF 126
              T+  F
Sbjct:   522 ETVKKF 527

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

TAIR|locus:2089144 RCK "ROCK-N-ROLLERS" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 49/122 (40%), Positives = 76/122 (62%)

Query:     3 YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
             YE L+ G E VES L   L+EHL +EIV  TISD++ A+EW++ ++ +VR+  NP +Y  
Sbjct:   434 YENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYAI 493

Query:    63 PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLI-TMNDGFDILPTVTGSIMAKFCIGFN 121
               G+  + ++  LQ     LC++++N LS+Y +I T  DGF + P   G +M K+ + F 
Sbjct:   494 KKGIPKDRVEKHLQE----LCLQKINELSQYQMIWTDTDGFVLKPEEPGRLMTKYYLKFE 549

Query:   122 TM 123
             TM
Sbjct:   550 TM 551

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IMP

GO:0051026 "chiasma assembly" evidence=IMP

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|G4N3Z7 MGG_05900 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 202 (76.2 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 49/125 (39%), Positives = 73/125 (58%)

Query:     2 RYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYG 61
             RYE +  G + +ES+LH +L+ HLNSEI L TI  +  A EWL+STF  VR+ +NP HY 
Sbjct:   638 RYEAMASGTQVLESTLHHNLIHHLNSEICLGTIRSLDSAKEWLKSTFLGVRLHANPSHYK 697

Query:    62 FPA-GLSSEELQSRLQGKN-SGLCMRELNGLSRYNLITMNDGFDILP-TVTGSIMAKFCI 118
               +   + E+L     G++   +C RE+N L    LI  ++  ++L  T  G  M+++ I
Sbjct:   698 IDSQSPNGEKLHV---GRSIDDMCEREINLLQEAKLIRFDN--NVLECTTAGRSMSEYMI 752

Query:   119 GFNTM 123
              F TM
Sbjct:   753 RFETM 757

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
COG1204	766	COG1204, COG1204, Superfamily II helicase [General	1e-08

>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 3   YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
           Y   +  +   E    +   E  N    L  +  V  AV WL  T F+ R   NP  YG 
Sbjct: 413 YLAELYIQSEPEPIESKLGDEL-NLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE 471

Query: 63  PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNT 122
                    +       + L   E NGL    L    +      T  G ++++  I   +
Sbjct: 472 ----GMLREE-----ILASLRYLEENGL---ILDADWEALH--ATELGKLVSRLYIDPES 517

Query: 123 MVAF 126
              F
Sbjct: 518 AKIF 521

Length = 766

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG0952|consensus	1230		100.0
KOG0951|consensus	1674		99.93
PRK02362	737	ski2-like helicase; Provisional	99.89
PRK00254	720	ski2-like helicase; Provisional	99.88
PRK01172	674	ski2-like helicase; Provisional	99.86
KOG0951|consensus	1674		99.82
COG1204	766	Superfamily II helicase [General function predicti	99.42
COG1202	830	Superfamily II helicase, archaea-specific [General	95.11
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	90.61
PF10264	80	Stork_head: Winged helix Storkhead-box1 domain; In	89.22
smart00847	92	HA2 Helicase associated domain (HA2) Add an annota	88.39
PF04408	102	HA2: Helicase associated domain (HA2); InterPro: I	88.37
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	88.02
PF14338	92	Mrr_N: Mrr N-terminal domain	86.4
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	86.35
PF06969	66	HemN_C: HemN C-terminal domain; InterPro: IPR01072	85.67
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	82.75
PRK03902	142	manganese transport transcriptional regulator; Pro	82.17
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	80.1

>KOG0952|consensus

Probab=100.00  E-value=2.7e-36  Score=271.18  Aligned_cols=145  Identities=30%  Similarity=0.542  Sum_probs=133.4

Q ss_pred             ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269           1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS   80 (148)
Q Consensus         1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~   80 (148)
                      ++|++++.++.||||+|+.+|.||+||||++|||+|+++|++||++||+|+||++||.+||+..+  .-..++.+..++.
T Consensus       494 ~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~--~l~~dp~l~s~~~  571 (1230)
T KOG0952|consen  494 DHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYE--ELEPDPRLESHRR  571 (1230)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhh--cccCCchHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999998753  1112466777777


Q ss_pred             hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269          81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~  147 (148)
                      ++|..+++.|.+.+||..|.. +.+.||++||+||+|||+++||+.|    ++.+++.++|+++|++.||+.
T Consensus       572 ~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~  643 (1230)
T KOG0952|consen  572 ELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQ  643 (1230)
T ss_pred             HHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhh
Confidence            999999999999999999987 8899999999999999999999999    557999999999999999973

>KOG0951|consensus

Probab=99.93  E-value=2e-27  Score=216.81  Aligned_cols=142  Identities=25%  Similarity=0.379  Sum_probs=133.9

Q ss_pred             ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269           1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS   80 (148)
Q Consensus         1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~   80 (148)
                      .+|.++++++.||||++.+.|.|.+||||+.| +++.+|+++|+.+||||+||.+||..||+.++.+    +..++.++.
T Consensus       705 qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~----d~~le~~r~  779 (1674)
T KOG0951|consen  705 QYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEAS----DRLLEQRRA  779 (1674)
T ss_pred             hhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccc----hHHHHHHHh
Confidence            37999999999999999999999999999999 9999999999999999999999999999986544    577888888


Q ss_pred             hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269          81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~  147 (148)
                      +++++++..|.++|+|-++.. |.+++|++|+|+|+|||.+.||..+    ++.+++.+++++++++.||..
T Consensus       780 ~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~  851 (1674)
T KOG0951|consen  780 DLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKY  851 (1674)
T ss_pred             hhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhcccccc
Confidence            999999999999999999987 8999999999999999999999999    788999999999999999964

>PRK02362 ski2-like helicase; Provisional

Probab=99.89  E-value=4e-23  Score=185.47  Aligned_cols=125  Identities=20%  Similarity=0.223  Sum_probs=109.2

Q ss_pred             hHHHhh-cCCCceecccc--HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhh
Q psy9269           2 RYEKLV-EGREPVESSLH--RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGK   78 (148)
Q Consensus         2 ~Y~~ll-~~~~pIES~L~--~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~   78 (148)
                      +|++++ ++++||||+|.  ..|++|+||||++|++.+.+|+++|+++||||+|.   +.             ...++  
T Consensus       403 ~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~---~~-------------~~~l~--  464 (737)
T PRK02362        403 LFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT---DD-------------TGRLE--  464 (737)
T ss_pred             HHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc---cc-------------hHHHH--
Confidence            477877 69999999996  58999999999999999999999999999999842   10             23566  


Q ss_pred             hHhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cC--CCCHHHHHHhhhCCCCCCC
Q psy9269          79 NSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TG--WEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        79 ~~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~--~~s~~~lL~ll~~s~e~~~  147 (148)
                        ++|+++++.|.++|||+.++ +.+.||++|+++|+|||+|.|+..|    ..  ..++.++|++||.+|||..
T Consensus       465 --~~v~~~l~~L~~~~~i~~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~  536 (737)
T PRK02362        465 --RVVDDVLDFLERNGMIEEDG-ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYE  536 (737)
T ss_pred             --HHHHHHHHHHHHCCCeeecC-CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccc
Confidence              89999999999999999876 6799999999999999999999999    22  2478999999999999964

>PRK00254 ski2-like helicase; Provisional

Probab=99.88  E-value=1.3e-22  Score=181.88  Aligned_cols=125  Identities=18%  Similarity=0.158  Sum_probs=108.9

Q ss_pred             HHHhh-cCCCceecccc--HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269           3 YEKLV-EGREPVESSLH--RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN   79 (148)
Q Consensus         3 Y~~ll-~~~~pIES~L~--~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~   79 (148)
                      |++++ +.|+++.|.|.  +.|++|+|++|+.|++.+.+|+++||++||+|.   +||.+|+             +.   
T Consensus       394 ~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~-------------~~---  454 (720)
T PRK00254        394 MERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYS-------------LE---  454 (720)
T ss_pred             HHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHh-------------HH---
Confidence            55553 56677888886  579999999999999999999999999999996   7888765             23   


Q ss_pred             HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----c---CCCCHHHHHHhhhCCCCCCC
Q psy9269          80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----T---GWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~---~~~s~~~lL~ll~~s~e~~~  147 (148)
                       +.+++++..|.++|||+.++++.+.||++|+++|+|||+|+|+..|    .   ..+++.++|++||.+|||..
T Consensus       455 -~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~  528 (720)
T PRK00254        455 -EKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTP  528 (720)
T ss_pred             -HHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccc
Confidence             6788899999999999998767899999999999999999999999    2   26789999999999999964

>PRK01172 ski2-like helicase; Provisional

Probab=99.86  E-value=2.2e-21  Score=172.61  Aligned_cols=122  Identities=13%  Similarity=0.092  Sum_probs=106.0

Q ss_pred             hHHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhh
Q psy9269           2 RYEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGK   78 (148)
Q Consensus         2 ~Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~   78 (148)
                      +|++++ ++|+||||+|..  .++.++++||+.|.+.+++|+++|+++||+|+   +|+.              +.++  
T Consensus       383 ~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~---~~~~--------------~~l~--  443 (674)
T PRK01172        383 AAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAI---QNGV--------------DEID--  443 (674)
T ss_pred             HHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHh---cCch--------------HHHH--
Confidence            467777 899999999985  46666779999999999999999999999998   4421              2455  


Q ss_pred             hHhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCC
Q psy9269          79 NSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLAT  146 (148)
Q Consensus        79 ~~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~  146 (148)
                        +.|+++++.|.++|||+.+  +.+.||++|++||+|||+|+|+..|    ...++..++|++||.+|||.
T Consensus       444 --~~v~~~l~~L~~~~~i~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~~  511 (674)
T PRK01172        444 --YYIESSLKFLKENGFIKGD--VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREII  511 (674)
T ss_pred             --HHHHHHHHHHHHCCCcccC--CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCcccc
Confidence              8999999999999999844  4699999999999999999999999    55678999999999999994

>KOG0951|consensus

Probab=99.82  E-value=4.3e-21  Score=175.87  Aligned_cols=117  Identities=34%  Similarity=0.507  Sum_probs=108.3

Q ss_pred             ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269           1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS   80 (148)
Q Consensus         1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~   80 (148)
                      .+|++|+.+|.|+||+|...|.|+.|+||+.++|.|.+||++||.|||+|+|+.+||.||++. +.+.+.++..|+    
T Consensus      1497 ~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~-~v~~~~~S~~lS---- 1571 (1674)
T KOG0951|consen 1497 EYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQ-GVSHRHLSDFLS---- 1571 (1674)
T ss_pred             HHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceeccc-ccchhhhhhHHH----
Confidence            379999999999999999999999999999999999999999999999999999999999988 567777766676    


Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF  126 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~  126 (148)
                      ++++.++..|++++||+++....    -+|.|+|+|||++-|+..|
T Consensus      1572 ~lvet~l~dl~~s~~i~v~dad~----~l~~Ias~y~i~y~ti~~f 1613 (1674)
T KOG0951|consen 1572 ELVETTLNDLEESKCIEVDDEDD----SLGMIASYYYISYITIERF 1613 (1674)
T ss_pred             HHHHHHHHHhhcCceEEeecccc----ccchhhhhceeeeEeeehh
Confidence            99999999999999999887533    2999999999999999988

>COG1204 Superfamily II helicase [General function prediction only]

Probab=99.42  E-value=2.1e-13  Score=123.45  Aligned_cols=120  Identities=28%  Similarity=0.292  Sum_probs=97.6

Q ss_pred             CCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHH
Q psy9269           9 GREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELN   88 (148)
Q Consensus         9 ~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~   88 (148)
                      .++|++|+|..   ++ |+++..+++.+..++++|+..||||.|+..||..|+..          .++    ..+..++.
T Consensus       422 ~~e~~~s~l~~---~~-~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~----------~~~----~~i~~~~~  483 (766)
T COG1204         422 EPEPIESKLGD---EL-NLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEG----------MLR----EEILASLR  483 (766)
T ss_pred             CcchHHHhhcc---cc-cchheEEEEEeccchhhHHHHHHHHHHHHhhhhhcccc----------chH----HHHHHHHH
Confidence            34445555443   33 99999999999999999999999999999999998752          233    67888999


Q ss_pred             HhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc-----cCC--CCHHHHHHhhhCCCCCC
Q psy9269          89 GLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF-----TGW--EKAQKDLALLTTLPLAT  146 (148)
Q Consensus        89 ~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~-----~~~--~s~~~lL~ll~~s~e~~  146 (148)
                      .|.+++++.......+.+|++|+.+|++||+|+||..|     ...  .++.+++++++.+|||.
T Consensus       484 ~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~  548 (766)
T COG1204         484 YLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLM  548 (766)
T ss_pred             HHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccch
Confidence            99999733333336799999999999999999999999     111  48999999999999985

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]

Probab=95.11  E-value=0.012  Score=52.60  Aligned_cols=42  Identities=21%  Similarity=0.254  Sum_probs=38.4

Q ss_pred             HHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc
Q psy9269          84 MRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF  126 (148)
Q Consensus        84 ~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~  126 (148)
                      +.++..|++.|||..++ +.+.||++|+++|.+++.|.++..+
T Consensus       620 ~k~l~~Lee~g~i~~~G-~~v~~T~yGrava~~Fl~p~~a~~I  661 (830)
T COG1202         620 KKALSKLEEYGMIKKKG-NIVRPTPYGRAVAMSFLGPSEAEFI  661 (830)
T ss_pred             HHHHHHHHhcCCeeccC-CEeeeccccceeEEeecCchHHHHH
Confidence            46778999999999876 5799999999999999999999998

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=90.61  E-value=0.65  Score=45.26  Aligned_cols=60  Identities=10%  Similarity=0.002  Sum_probs=45.3

Q ss_pred             hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcCCCHHHHHhc---cCCCCHHHHHHhhh
Q psy9269          81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFCIGFNTMVAF---TGWEKAQKDLALLT  140 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~YI~~~T~~~~---~~~~s~~~lL~ll~  140 (148)
                      +-+..++..|.+.|.|..+++ +....|++|+.||++.|+|.-.+++   ...-...+++-+.|
T Consensus       456 ~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA  519 (1294)
T PRK11131        456 RNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITS  519 (1294)
T ss_pred             HHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHH
Confidence            567889999999999975532 3468999999999999999999988   22224445555444

>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []

Probab=89.22  E-value=1.3  Score=29.72  Aligned_cols=66  Identities=14%  Similarity=0.018  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceee
Q psy9269          19 RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITM   98 (148)
Q Consensus        19 ~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~   98 (148)
                      +.|+..|-..=+.|..-+.+.+++||..-|=.+   .-|+.                     +.+..+|..|.+.|-|..
T Consensus        14 EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i---~~Ps~---------------------e~l~~~L~~Li~erkIY~   69 (80)
T PF10264_consen   14 EVLCWVISDLNAAGQPATQETLREHLRKHYPGI---AIPSQ---------------------EVLYNTLGTLIKERKIYH   69 (80)
T ss_pred             HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCC---CCCCH---------------------HHHHHHHHHHHHcCceee
Confidence            567777777778899999999999999877322   11211                     788899999999999988


Q ss_pred             cCCCccccCh
Q psy9269          99 NDGFDILPTV  108 (148)
Q Consensus        99 ~~~~~i~~T~  108 (148)
                      .++|.+..|+
T Consensus        70 tg~GYfivtP   79 (80)
T PF10264_consen   70 TGEGYFIVTP   79 (80)
T ss_pred             CCCceEeeCC
Confidence            8777777665

This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation

Probab=88.39  E-value=0.97  Score=29.86  Aligned_cols=52  Identities=13%  Similarity=0.008  Sum_probs=38.3

Q ss_pred             HHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc---cCC-CCHHHHHHhhhC
Q psy9269          86 ELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF---TGW-EKAQKDLALLTT  141 (148)
Q Consensus        86 ~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~---~~~-~s~~~lL~ll~~  141 (148)
                      ++..|...|.|..+  +  ..|++|+.||.+=++|.=.+++   ... ....+++.+++.
T Consensus         2 A~~~L~~LgAld~~--~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~   57 (92)
T smart00847        2 ALELLYELGALDDD--G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAM   57 (92)
T ss_pred             HHHHHHHCCCcCCC--C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            56678888998632  3  7999999999999999999888   221 245566666553

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length

Probab=88.37  E-value=0.99  Score=30.88  Aligned_cols=38  Identities=16%  Similarity=0.069  Sum_probs=28.6

Q ss_pred             HHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc
Q psy9269          85 RELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF  126 (148)
Q Consensus        85 ~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~  126 (148)
                      ++++.|...|.|..+    -..|++|+.++++=++|.=.+++
T Consensus         1 ~A~~~L~~Lgald~~----~~lT~lG~~~~~lPl~p~~a~~L   38 (102)
T PF04408_consen    1 KALELLKSLGALDEN----GNLTPLGRKMSQLPLDPRLAKML   38 (102)
T ss_dssp             -HHHHHHHTTSB-TT----S-B-HHHHHHTTSSS-HHHHHHH
T ss_pred             CHHHHHHHCCCCCCC----CCcCHHHHHHHHCCCchHhHhHh
Confidence            367789999999422    38899999999999999998887

It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=88.02  E-value=0.57  Score=34.97  Aligned_cols=77  Identities=13%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             HHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeecCCCccccChhhH-HHHhcCC
Q psy9269          40 AVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGS-IMAKFCI  118 (148)
Q Consensus        40 ~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~-i~S~~YI  118 (148)
                      .-++|+.-|...+ .+.|        ....++...|.+. ..-|.+.++.|.+.|+|.+.+.+.+..|+.|+ ++...+=
T Consensus         8 ~edYL~~Iy~l~~-~~~~--------~~~~diA~~L~Vs-p~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a~~~~r   77 (154)
T COG1321           8 EEDYLETIYELLE-EKGF--------ARTKDIAERLKVS-PPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKAKELLR   77 (154)
T ss_pred             HHHHHHHHHHHHh-ccCc--------ccHHHHHHHhCCC-cHHHHHHHHHHHHCCCeEEecCCCeEEChhhHHHHHHHHH
Confidence            3467777766553 1111        1223344444422 24566789999999999998888899999999 7766776


Q ss_pred             CHHHHHhc
Q psy9269         119 GFNTMVAF  126 (148)
Q Consensus       119 ~~~T~~~~  126 (148)
                      .+.+...|
T Consensus        78 ~hrlle~f   85 (154)
T COG1321          78 KHRLLERF   85 (154)
T ss_pred             HHHHHHHH
Confidence            77777777

>PF14338 Mrr_N: Mrr N-terminal domain

Probab=86.40  E-value=5.7  Score=26.57  Aligned_cols=76  Identities=16%  Similarity=-0.000  Sum_probs=48.4

Q ss_pred             HHHHHHh-CCcCCHHHHHHHHHhHHHHH---HHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeecC
Q psy9269          25 LNSEIVL-KTISDVSVAVEWLRSTFFFV---RVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMND  100 (148)
Q Consensus        25 lnaeIa~-g~i~s~~~~~~wl~~TFly~---Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~~  100 (148)
                      ++..++. |...+..|+.+.+...|-..   +-..-|+      +..    .....    .-+.=++..|...|+|+...
T Consensus         9 iL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~s------g~~----~~~~~----~ri~Wa~~~L~~aGli~~~~   74 (92)
T PF14338_consen    9 ILEALKDLGGSASRKEIYERVAERFGLSDEERNERLPS------GQG----YSRFK----NRIRWARSYLKKAGLIERPK   74 (92)
T ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHccc------CCc----chhHH----HhHHHHHHHHHHCCCccCCC
Confidence            3444444 88899999999998776211   0000000      000    01222    55667888999999998755


Q ss_pred             CCccccChhhHHHH
Q psy9269         101 GFDILPTVTGSIMA  114 (148)
Q Consensus       101 ~~~i~~T~lG~i~S  114 (148)
                      .|.+..|+.|+-+-
T Consensus        75 rG~~~iT~~G~~~l   88 (92)
T PF14338_consen   75 RGIWRITEKGRKAL   88 (92)
T ss_pred             CCceEECHhHHHHH
Confidence            58999999998653

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=86.35  E-value=1.6  Score=42.70  Aligned_cols=45  Identities=9%  Similarity=0.013  Sum_probs=39.1

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF  126 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~  126 (148)
                      .-+..++..|.+.|.|..++ +....|++|+.||++.++|.-.+++
T Consensus       449 ~~i~~A~~~L~~LGAld~~~-~~~~LT~lGr~ma~LPldPrlarmL  493 (1283)
T TIGR01967       449 RAIRDGFRLLEELGALDDDE-AEPQLTPIGRQLAQLPVDPRLARML  493 (1283)
T ss_pred             HHHHHHHHHHHHCCCCCCCC-CCccccHHHHHHhhcCCChHHHHHH
Confidence            56788999999999997544 3468999999999999999999998

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN)

Probab=85.67  E-value=0.89  Score=28.34  Aligned_cols=30  Identities=20%  Similarity=0.208  Sum_probs=23.9

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhH
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGS  111 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~  111 (148)
                      +.....+..|.+.|+|+.++ +.+.+|+-|+
T Consensus        36 ~~~~~~l~~l~~~Gll~~~~-~~l~lT~~G~   65 (66)
T PF06969_consen   36 EEFQKELEELQEDGLLEIDG-GRLRLTEKGR   65 (66)
T ss_dssp             HH-HHHHHHHHHTTSEEE-S-SEEEE-TTTG
T ss_pred             HHHHHHHHHHHHCCCEEEeC-CEEEECcccC
Confidence            55577899999999999988 7899999996

This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=82.75  E-value=2.1  Score=27.90  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=27.8

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKF  116 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~  116 (148)
                      ..+...++.|.+.|+|..++ +.+..|+-|+-+-.-
T Consensus        34 ~~~~~yL~~L~~~gLI~~~~-~~Y~lTekG~~~l~~   68 (77)
T PF14947_consen   34 STLKKYLKELEEKGLIKKKD-GKYRLTEKGKEFLEE   68 (77)
T ss_dssp             HHHHHHHHHHHHTTSEEEET-TEEEE-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCeeCCC-CEEEECccHHHHHHH
Confidence            56778899999999997644 789999999976543

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=82.17  E-value=1.9  Score=31.16  Aligned_cols=36  Identities=11%  Similarity=0.114  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKF  116 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~  116 (148)
                      .-|...++.|++.|+|.....+.+.+|+-|+.++..
T Consensus        37 ~svs~~l~~L~~~Gli~~~~~~~i~LT~~G~~~a~~   72 (142)
T PRK03902         37 SSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKR   72 (142)
T ss_pred             hHHHHHHHHHHHCCCEEEecCceEEECHHHHHHHHH
Confidence            456678899999999987655679999999876544

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=80.10  E-value=2.9  Score=27.68  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCC
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCI  118 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI  118 (148)
                      .-+..+++.|++.|+|...++..+.+|+.|.....-..
T Consensus        14 stvs~~l~~L~~~glI~r~~~~~~~lT~~g~~~~~~~~   51 (96)
T smart00529       14 PTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLL   51 (96)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCCceEechhHHHHHHHHH
Confidence            45678899999999999988667999999988764443

iron dependent repressor

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
4f91_B	1724	Brr2 Helicase Region Length = 1724		5e-12
4f92_B	1724	Brr2 Helicase Region S1087l Length = 1724		5e-12

>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 3    YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
            ++K +    PVES L   + +H N+EIV KTI +   AV++L  TF + R+  NP +Y  
Sbjct: 1313 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372
Query: 63   PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNT 122
              G+S   L   L    S L  + L+ L +   I++ D  D+ P   G I A + I + T
Sbjct: 1373 -QGISHRHLSDHL----SELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTT 1427
Query: 123  MVAFT 127
            +  F+
Sbjct: 1428 IELFS 1432

>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 3    YEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGF 62
            ++K +    PVES L   + +H N+EIV KTI +   AV++L  TF + R+  NP +Y  
Sbjct: 1313 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372
Query: 63   PAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNT 122
              G+S   L   L    S L  + L+ L +   I++ D  D+ P   G I A + I + T
Sbjct: 1373 -QGISHRHLSDHL----SELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTT 1427
Query: 123  MVAFT 127
            +  F+
Sbjct: 1428 IELFS 1432

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	3e-17
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	6e-17
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	7e-12

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702

 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 27/129 (20%)

Query: 1   ERYEKLVEGR-EPVESSL--HRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNP 57
              ++ + G  E + S L    HL  H  S I       +    ++   TFFF +   + 
Sbjct: 392 IAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL 451

Query: 58  GHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFC 117
            +                         R +  L  + ++         PT  GS++++  
Sbjct: 452 SYE----------------------LERVVRQLENWGMVVEAAHLA--PTKLGSLVSRLY 487

Query: 118 IGFNTMVAF 126
           I   T   F
Sbjct: 488 IDPLTGFIF 496

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720

 Score = 75.3 bits (185), Expect = 6e-17
 Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 24/151 (15%)

Query: 1   ERYEKLVEGR-EPVESSL--HRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNP 57
           E     + G+ E + S L    +L   + + I     S V   ++++ +TF+  +     
Sbjct: 391 EVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ---RK 447

Query: 58  GHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFC 117
             Y                          L  L     I ++    I P   G   AK  
Sbjct: 448 DTYSL-----------------EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLY 490

Query: 118 IGFNTMVAF-TGWEKAQKDLALLTTLPLATS 147
           I   T   F    E+  KD   +    L + 
Sbjct: 491 IDPYTAKMFKDKMEEVVKDPNPIGIFHLISL 521

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 28/126 (22%)

Query: 3   YEKLVEGREPVESSLH--RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHY 60
            + ++   EP+ES L   R     L   +  +          +   +    +++      
Sbjct: 416 KKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDV---- 471

Query: 61  GFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGF 120
                                   R +  L  ++ I          T  G  +A   I  
Sbjct: 472 ---------------------YFDRAIRWLLEHSFIKEEGN-TFALTNFGKRVADLYINP 509

Query: 121 NTMVAF 126
            T    
Sbjct: 510 FTADII 515

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	99.96
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	99.95
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	99.74
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	99.73
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	99.69
3im1_A	328	Protein SNU246, PRE-mRNA-splicing helicase BRR2; A	98.93
2q0z_X	339	Protein Pro2281; SEC63, SEC, NESG, HR1979, structu	98.88
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.68
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	90.33
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	82.73
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	80.28

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=99.96  E-value=7.4e-30  Score=243.31  Aligned_cols=142  Identities=29%  Similarity=0.478  Sum_probs=133.3

Q ss_pred             ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269           1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS   80 (148)
Q Consensus         1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~   80 (148)
                      ++|++++++++||||+|+..+.+|+|+||++|+|.+++++++|+++||||+|+.+||.+|+++ +.+...++..++    
T Consensus      1311 ~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~-~~~~~~~~~~l~---- 1385 (1724)
T 4f92_B         1311 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQ-GISHRHLSDHLS---- 1385 (1724)
T ss_dssp             HHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCS-CCSHHHHHHHHH----
T ss_pred             HHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCccccccc-ccchhhHHHHHH----
Confidence            369999999999999999999999999999999999999999999999999999999999997 456777777777    


Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~  147 (148)
                      ++|+++++.|+++|||+.++++.+.||++|++||+|||+|.||+.|    .+.++..++|++||.++||..
T Consensus      1386 ~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~ 1456 (1724)
T 4f92_B         1386 ELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYEN 1456 (1724)
T ss_dssp             HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCccccc
Confidence            9999999999999999998878899999999999999999999999    677899999999999999964

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=99.95  E-value=1.7e-28  Score=234.08  Aligned_cols=145  Identities=21%  Similarity=0.334  Sum_probs=130.1

Q ss_pred             ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269           1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS   80 (148)
Q Consensus         1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~   80 (148)
                      ++|.++++++.||||+|+.++.+|+||||++|+|++.+|+++||++||+|+|+.+||.+||+..+  ...-++.+..++.
T Consensus       476 ~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~--~~~~d~~l~~~~~  553 (1724)
T 4f92_B          476 QYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHD--DLKGDPLLDQRRL  553 (1724)
T ss_dssp             CHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHH--HHHHCTTCHHHHH
T ss_pred             HHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCcc--ccccchHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999998632  1111234555566


Q ss_pred             hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269          81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~  147 (148)
                      ++|+.++..|.++|||.++++ +.+.||++||+||+|||+|.||..|    ++.+++.++|++||.++||..
T Consensus       554 ~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~  625 (1724)
T 4f92_B          554 DLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKN  625 (1724)
T ss_dssp             HHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhcc
Confidence            999999999999999999876 7899999999999999999999999    677999999999999999964

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=99.74  E-value=1.3e-17  Score=146.90  Aligned_cols=121  Identities=21%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             HHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269           3 YEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN   79 (148)
Q Consensus         3 Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~   79 (148)
                      |++++ +.|+|+||+|..  .|.+|++++|+.|++.+.+|+.+|+.+||+|+|+. .|                 +.   
T Consensus       394 ~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~~-----------------~~---  452 (702)
T 2p6r_A          394 VKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-IS-----------------LS---  452 (702)
T ss_dssp             HHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-CC-----------------CH---
T ss_pred             HHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-HH-----------------HH---
Confidence            33454 689999999985  89999999999999999999999999999999764 11                 12   


Q ss_pred             HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cCC-CCHHHHHHhhhCCCCCCC
Q psy9269          80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TGW-EKAQKDLALLTTLPLATS  147 (148)
Q Consensus        80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~-~s~~~lL~ll~~s~e~~~  147 (148)
                       +.++++++.|.+.|+|..+  +.+.+|++|++||+|||+|.|+++|    ... .+..++|++||+++||.+
T Consensus       453 -~~~~~al~~L~~~g~i~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~  522 (702)
T 2p6r_A          453 -YELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMER  522 (702)
T ss_dssp             -HHHHHHHHHHHHTTSEEES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCC
T ss_pred             -HHHHHHHHHHHHCcCeeEC--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCccccc
Confidence             6788999999999999976  4699999999999999999999999    332 678899999999999853

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=99.73  E-value=2.8e-17  Score=145.14  Aligned_cols=125  Identities=19%  Similarity=0.124  Sum_probs=107.0

Q ss_pred             HHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269           3 YEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN   79 (148)
Q Consensus         3 Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~   79 (148)
                      |++++ ++++|+||++..  .|++|++++|+.|++.+.+|+.+|+.+||+|+|+.   .             +..+.   
T Consensus       393 ~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~---~-------------~~~~~---  453 (720)
T 2zj8_A          393 MNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRK---D-------------TYSLE---  453 (720)
T ss_dssp             HHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCS---C-------------CHHHH---
T ss_pred             HHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhcc---c-------------hHHHH---
Confidence            44555 688999999985  89999999999999999999999999999998652   1             13355   


Q ss_pred             HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cC---CCCHHHHHHhhhCCCCCCC
Q psy9269          80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TG---WEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~---~~s~~~lL~ll~~s~e~~~  147 (148)
                       +.++++++.|.+.|+|..+.++.+.+|++|++||+|||+|.|++.|    ..   ..+..++|+++|+++||.+
T Consensus       454 -~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~  527 (720)
T 2zj8_A          454 -EKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITP  527 (720)
T ss_dssp             -HHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCC
T ss_pred             -HHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccc
Confidence             7899999999999999954446799999999999999999999999    22   3788999999999999853

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=99.69  E-value=5e-17  Score=143.14  Aligned_cols=119  Identities=18%  Similarity=0.112  Sum_probs=104.0

Q ss_pred             HHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269           3 YEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN   79 (148)
Q Consensus         3 Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~   79 (148)
                      |++++ +.|+|++|+|..  .|.+|++++++.|++.+.+|+.+|+.+||+|+|...                        
T Consensus       415 ~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~------------------------  470 (715)
T 2va8_A          415 FKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVD------------------------  470 (715)
T ss_dssp             HHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHH------------------------
T ss_pred             HHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcch------------------------
Confidence            44555 689999999985  899999999999999999999999999999986431                        


Q ss_pred             HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cC--CCCHHHHHHhhhCCCCCCC
Q psy9269          80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TG--WEKAQKDLALLTTLPLATS  147 (148)
Q Consensus        80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~--~~s~~~lL~ll~~s~e~~~  147 (148)
                       .-++.+++.|.+.|+|..++ +.+.+|++|++||++||+|.|+++|    ..  ..+..++|++||.++||.+
T Consensus       471 -~~~~~al~~L~~~g~i~~~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~  542 (715)
T 2va8_A          471 -VYFDRAIRWLLEHSFIKEEG-NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL  542 (715)
T ss_dssp             -HHHHHHHHHHHHTTSEEECS-SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCC
T ss_pred             -HHHHHHHHHHHHCcCEeecC-CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCccccc
Confidence             23778999999999999765 6799999999999999999999999    22  4789999999999999854

>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A

Probab=98.93  E-value=1.6e-10  Score=94.01  Aligned_cols=48  Identities=21%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             CCCccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269         100 DGFDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus       100 ~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~  147 (148)
                      +++.+.||++|+|||+|||+|.||..|    ++.++..++|++||.++||..
T Consensus         5 ~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~   56 (328)
T 3im1_A            5 ATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFES   56 (328)
T ss_dssp             CCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGG
T ss_pred             CCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHh
Confidence            446799999999999999999999999    678999999999999999963

>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22

Probab=98.88  E-value=3.9e-10  Score=92.20  Aligned_cols=46  Identities=20%  Similarity=0.333  Sum_probs=16.8

Q ss_pred             CccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269         102 FDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS  147 (148)
Q Consensus       102 ~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~  147 (148)
                      |.+.||++|+|||+|||++.||+.|    ++.++..++|++||.++||..
T Consensus        11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~   60 (339)
T 2q0z_X           11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYEN   60 (339)
T ss_dssp             --------------------------------CCHHHHHHHHHTSGGGTT
T ss_pred             ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhc
Confidence            7899999999999999999999999    667999999999999999964

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.68  E-value=0.013  Score=52.54  Aligned_cols=59  Identities=19%  Similarity=0.171  Sum_probs=45.3

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc---cCCCCHHHHHHhhhCCC
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF---TGWEKAQKDLALLTTLP  143 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~---~~~~s~~~lL~ll~~s~  143 (148)
                      +.+..++..|.+.|+|..+  |  .+|++|++||+++++|..++++   ........++.++|..+
T Consensus       489 ~~i~~a~~~L~~lgald~~--~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls  550 (773)
T 2xau_A          489 ETMMRALEELNYLACLDDE--G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLS  550 (773)
T ss_dssp             HHHHHHHHHHHHTTSBCTT--S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCcccC--C--CcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence            5678899999999999532  3  4899999999999999999998   22234566666666543

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=90.33  E-value=0.051  Score=33.25  Aligned_cols=48  Identities=15%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeec
Q psy9269          36 DVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMN   99 (148)
Q Consensus        36 s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~   99 (148)
                      +.++++++++++=-++++..--..||+..                +.|-.+|+.|++.|+|..+
T Consensus        11 ~e~~lL~yIr~sGGildI~~~a~kygV~k----------------deV~~~LrrLe~KGLI~le   58 (59)
T 2xvc_A           11 TERELLDYIVNNGGFLDIEHFSKVYGVEK----------------QEVVKLLEALKNKGLIAVE   58 (59)
T ss_dssp             CHHHHHHHHHHTTSEEEHHHHHHHHCCCH----------------HHHHHHHHHHHHTTSEEEE
T ss_pred             cHHHHHHHHHHcCCEEeHHHHHHHhCCCH----------------HHHHHHHHHHHHCCCeecc
Confidence            56677777777755555555555677763                6778899999999999865

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=82.73  E-value=1.8  Score=33.79  Aligned_cols=42  Identities=17%  Similarity=0.066  Sum_probs=35.8

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF  126 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~  126 (148)
                      +-+..++..|...|.+..+  |  ..|++|+.|+++=++|.-.+++
T Consensus        18 ~~l~~A~~~L~~LgAld~~--g--~lT~lG~~ma~lPl~P~lakmL   59 (270)
T 3i4u_A           18 ETLITAMEQLYTLGALDDE--G--LLTRLGRRMAEFPLEPMLCKML   59 (270)
T ss_dssp             HHHHHHHHHHHHHTSBCTT--S--CBCHHHHHHTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCCC--C--CccHHHHHHHhCCCCHHHHHHH
Confidence            4567899999999998632  3  5899999999999999999988

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=80.28  E-value=1.6  Score=28.68  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=28.0

Q ss_pred             hHHHHHHHHhhhCCceeecCCCccccChhhHHHH
Q psy9269          81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMA  114 (148)
Q Consensus        81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S  114 (148)
                      ..+...++.|++.|+|+... +.+..|+-|+-.-
T Consensus        35 ~~~~~~l~~L~~~GLI~~~~-~~~~LT~kG~~~l   67 (95)
T 1r7j_A           35 ALTGRYIKMLMDLEIIRQEG-KQYMLTKKGEELL   67 (95)
T ss_dssp             HHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEC-CeeEEChhHHHHH
Confidence            56778899999999999887 5699999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d2p6ra1	85	a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu	2e-10

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: RecQ helicase DNA-binding domain-like
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 26/108 (24%)

Query: 13  VESSLH--RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEE 70
           + S L    HL  H  S I       +    ++   TFFF +   +              
Sbjct: 2   ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------- 48

Query: 71  LQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCI 118
                    S    R +  L  + ++       + PT  GS++++  I
Sbjct: 49  ---------SYELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYI 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d2p6ra1	85	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.94

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: RecQ helicase DNA-binding domain-like
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=7.6e-28  Score=160.85  Aligned_cols=83  Identities=22%  Similarity=0.265  Sum_probs=75.5

Q ss_pred             ceecccc--HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHH
Q psy9269          12 PVESSLH--RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNG   89 (148)
Q Consensus        12 pIES~L~--~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~   89 (148)
                      .|||+|.  ++|++||||||++|+|++.+|+++||++||||+|+.+||                  +    +.|++++++
T Consensus         1 ~i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l------------------~----~~i~~~l~~   58 (85)
T d2p6ra1           1 RITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------------S----YELERVVRQ   58 (85)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC------------------H----HHHHHHHHH
T ss_pred             CceeCCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhhcH------------------H----HHHHHHHHH
Confidence            3899997  599999999999999999999999999999999986554                  2    678999999


Q ss_pred             hhhCCceeecCCCccccChhhHHHHhcCC
Q psy9269          90 LSRYNLITMNDGFDILPTVTGSIMAKFCI  118 (148)
Q Consensus        90 L~~~~lI~~~~~~~i~~T~lG~i~S~~YI  118 (148)
                      |.++|||+.++  .+.||++|++||+|||
T Consensus        59 L~~~~~I~~~~--~l~aT~lGri~S~~YI   85 (85)
T d2p6ra1          59 LENWGMVVEAA--HLAPTKLGSLVSRLYI   85 (85)
T ss_dssp             HHHTTSEEESS--SEEECHHHHHHHHTTC
T ss_pred             HHHCCCccccc--ccccCHHHHHHHHHhC
Confidence            99999999765  5999999999999997