Psyllid ID: psy9339

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNLVDALPVVFESSEDPAKKA
ccccEEEEcccccccccEEEEEEEEcccccccccccccEEEEEEEccccccEEEEEcccEEccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
ccEEEccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEEEEEccccEEEEEEcccEEEEEEEEcccccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHcccccccEEEEccEEEEccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcHHccccHHHHHHHHccccccccccHHHcccHHHcc
MKIAMLMNVIGSEAAKIIFKIVNIeeedmtvvggkkfDLRLYVLVTSfrplkcylfklgfcrfctvkydkniTELDNMYVHLTNVSvqkhgadynnihggkmNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDkhcfecygydiiidnqlkpwlievnaspsltcttvndrilispAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNLVDALPvvfessedpakka
MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNLVdalpvvfessedpakka
MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNLVDALPVVFESSEDPAKKA
***AMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGP******************************************
MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVF**************************************************
MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNLVDALPVVFE*********
MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLEE*****************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKIAMLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLxxxxxxxxxxxxxxxxxxxxxLGPKVxxxxxxxxxxxxxxxxxxxxxLVDALPVVFESSEDPAKKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
O95922423 Probable tubulin polyglut yes N/A 0.600 0.366 0.735 2e-70
Q0VC71423 Probable tubulin polyglut yes N/A 0.600 0.366 0.735 3e-70
Q5PPI9423 Probable tubulin polyglut yes N/A 0.600 0.366 0.729 4e-70
Q91V51423 Probable tubulin polyglut yes N/A 0.600 0.366 0.729 4e-70
Q23SI8433 Probable alpha-tubulin po N/A N/A 0.600 0.357 0.593 1e-50
Q3SZH6461 Probable tubulin polyglut no N/A 0.596 0.334 0.487 3e-40
Q641W7461 Probable tubulin polyglut no N/A 0.596 0.334 0.487 6e-40
A2APC3461 Probable tubulin polyglut no N/A 0.596 0.334 0.487 2e-39
Q3SXZ7439 Probable tubulin polyglut no N/A 0.538 0.316 0.467 1e-29
Q8CHB8 1328 Tubulin polyglutamylase T no N/A 0.542 0.105 0.426 2e-28
>sp|O95922|TTLL1_HUMAN Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 140/155 (90%)

Query: 31  VVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH 90
           ++GG+KFDLRLYVLV+++RPL+CY++KLGFCRFCTVKY  + +ELDNM+VHLTNV++QKH
Sbjct: 189 LIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRFCTVKYTPSTSELDNMFVHLTNVAIQKH 248

Query: 91  GADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFE 150
           G DYN+IHGGK  + NLRLYLESTRGK++T+KLF  I W+IV SLK+V+ +M NDKHCFE
Sbjct: 249 GEDYNHIHGGKWTVSNLRLYLESTRGKEVTSKLFDEIHWIIVQSLKAVAPVMNNDKHCFE 308

Query: 151 CYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL 185
           CYGYDIIID++LKPWLIEVNASPSLT +T NDRIL
Sbjct: 309 CYGYDIIIDDKLKPWLIEVNASPSLTSSTANDRIL 343
Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q0VC71|TTLL1_BOVIN Probable tubulin polyglutamylase TTLL1 OS=Bos taurus GN=TTLL1 PE=2 SV=1 Back     alignment and function description
>sp|Q5PPI9|TTLL1_RAT Probable tubulin polyglutamylase TTLL1 OS=Rattus norvegicus GN=Ttll1 PE=2 SV=1 Back     alignment and function description
>sp|Q91V51|TTLL1_MOUSE Probable tubulin polyglutamylase TTLL1 OS=Mus musculus GN=Ttll1 PE=1 SV=1 Back     alignment and function description
>sp|Q23SI8|TTLL1_TETTS Probable alpha-tubulin polyglutamylase Ttll1 OS=Tetrahymena thermophila (strain SB210) GN=Ttll1 PE=3 SV=1 Back     alignment and function description
>sp|Q3SZH6|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9 PE=2 SV=1 Back     alignment and function description
>sp|Q641W7|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus GN=Ttll9 PE=2 SV=1 Back     alignment and function description
>sp|A2APC3|TTLL9_MOUSE Probable tubulin polyglutamylase TTLL9 OS=Mus musculus GN=Ttll9 PE=2 SV=2 Back     alignment and function description
>sp|Q3SXZ7|TTLL9_HUMAN Probable tubulin polyglutamylase TTLL9 OS=Homo sapiens GN=TTLL9 PE=2 SV=3 Back     alignment and function description
>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
357629046352 tubulin-tyrosine ligase [Danaus plexippu 0.600 0.440 0.812 5e-75
156549431 432 PREDICTED: probable tubulin polyglutamyl 0.600 0.358 0.832 1e-74
312373172 466 hypothetical protein AND_17841 [Anophele 0.616 0.341 0.798 3e-74
158290036 417 AGAP010336-PA [Anopheles gambiae str. PE 0.616 0.381 0.798 7e-74
157108872 436 hypothetical protein AaeL_AAEL005148 [Ae 0.616 0.364 0.792 1e-73
170053989 410 tubulin-tyrosine ligase [Culex quinquefa 0.616 0.387 0.798 1e-73
332029621 376 Putative tubulin polyglutamylase TTLL1 [ 0.600 0.412 0.819 1e-73
242014911 361 conserved hypothetical protein [Pediculu 0.600 0.429 0.806 2e-73
340717338 436 PREDICTED: probable tubulin polyglutamyl 0.600 0.355 0.819 3e-73
307212492 408 Probable tubulin polyglutamylase TTLL1 [ 0.600 0.379 0.819 4e-73
>gi|357629046|gb|EHJ78071.1| tubulin-tyrosine ligase [Danaus plexippus] Back     alignment and taxonomy information
 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 144/155 (92%)

Query: 31  VVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH 90
           ++GGKKFDLRLYVLVTSFRPLK YLF+LGFCRFCTVKYD ++TELDNMYVHLTNVSVQKH
Sbjct: 136 LIGGKKFDLRLYVLVTSFRPLKAYLFQLGFCRFCTVKYDTSVTELDNMYVHLTNVSVQKH 195

Query: 91  GADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFE 150
           G DYN+IHGGKM++QNLRL+LE TRG+ +T  LF +I WLIVHSLK+VS +MAND+HC+E
Sbjct: 196 GGDYNSIHGGKMSVQNLRLFLEGTRGRAVTETLFASIQWLIVHSLKAVSSVMANDRHCYE 255

Query: 151 CYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL 185
           CYGYDIIIDNQLKPWL+EVNASPSLT TTVNDRI+
Sbjct: 256 CYGYDIIIDNQLKPWLVEVNASPSLTSTTVNDRIM 290

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156549431|ref|XP_001605729.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|312373172|gb|EFR20973.1| hypothetical protein AND_17841 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|158290036|ref|XP_311608.4| AGAP010336-PA [Anopheles gambiae str. PEST] gi|157018446|gb|EAA07118.4| AGAP010336-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157108872|ref|XP_001650424.1| hypothetical protein AaeL_AAEL005148 [Aedes aegypti] gi|108879202|gb|EAT43427.1| AAEL005148-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170053989|ref|XP_001862924.1| tubulin-tyrosine ligase [Culex quinquefasciatus] gi|167874394|gb|EDS37777.1| tubulin-tyrosine ligase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|332029621|gb|EGI69510.1| Putative tubulin polyglutamylase TTLL1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242014911|ref|XP_002428126.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512657|gb|EEB15388.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340717338|ref|XP_003397141.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307212492|gb|EFN88223.1| Probable tubulin polyglutamylase TTLL1 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
FB|FBgn0052238487 CG32238 [Drosophila melanogast 0.600 0.318 0.787 2.4e-67
UNIPROTKB|F1NZA9427 TTLL1 "Uncharacterized protein 0.670 0.405 0.678 1.2e-65
ZFIN|ZDB-GENE-040426-1326423 ttll1 "tubulin tyrosine ligase 0.639 0.390 0.703 2.5e-65
UNIPROTKB|F1SJR6423 TTLL1 "Uncharacterized protein 0.670 0.408 0.666 1.1e-64
UNIPROTKB|Q0VC71423 TTLL1 "Probable tubulin polygl 0.639 0.390 0.690 1.4e-64
UNIPROTKB|E2RTA4423 TTLL1 "Uncharacterized protein 0.639 0.390 0.690 1.4e-64
UNIPROTKB|O95922423 TTLL1 "Probable tubulin polygl 0.639 0.390 0.690 1.4e-64
MGI|MGI:2443047423 Ttll1 "tubulin tyrosine ligase 0.670 0.408 0.660 1.4e-64
RGD|1309124423 Ttll1 "tubulin tyrosine ligase 0.670 0.408 0.660 1.8e-64
UNIPROTKB|Q5PPI9423 Ttll1 "Probable tubulin polygl 0.670 0.408 0.660 1.8e-64
FB|FBgn0052238 CG32238 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 122/155 (78%), Positives = 141/155 (90%)

Query:    31 VVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH 90
             ++GGKKFDLRLYVLV SFRPLK YLFK GFCRFCTVKYD ++TELDNMYVHLTNVSVQKH
Sbjct:   264 LIGGKKFDLRLYVLVASFRPLKAYLFKQGFCRFCTVKYDTSVTELDNMYVHLTNVSVQKH 323

Query:    91 GADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFE 150
             G +YN +HGGK ++QNL LYLE TRGK++T++LF  ISWLIVHSL++V+ +MA+D+HCFE
Sbjct:   324 GGEYNTLHGGKWSVQNLALYLEGTRGKEVTDRLFGAISWLIVHSLRAVAPVMASDRHCFE 383

Query:   151 CYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL 185
             CYGYDIIIDN LKPWL+EVNASPSLT TTVNDRIL
Sbjct:   384 CYGYDIIIDNALKPWLVEVNASPSLTSTTVNDRIL 418
GO:0004835 "tubulin-tyrosine ligase activity" evidence=ISS
GO:0018166 "C-terminal protein-tyrosinylation" evidence=ISS
UNIPROTKB|F1NZA9 TTLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1326 ttll1 "tubulin tyrosine ligase-like family, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJR6 TTLL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VC71 TTLL1 "Probable tubulin polyglutamylase TTLL1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTA4 TTLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95922 TTLL1 "Probable tubulin polyglutamylase TTLL1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443047 Ttll1 "tubulin tyrosine ligase-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309124 Ttll1 "tubulin tyrosine ligase-like family, member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PPI9 Ttll1 "Probable tubulin polyglutamylase TTLL1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O95922TTLL1_HUMAN6, ., -, ., -, ., -0.73540.60070.3664yesN/A
Q91V51TTLL1_MOUSE6, ., -, ., -, ., -0.72900.60070.3664yesN/A
Q5PPI9TTLL1_RAT6, ., -, ., -, ., -0.72900.60070.3664yesN/A
Q0VC71TTLL1_BOVIN6, ., -, ., -, ., -0.73540.60070.3664yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
pfam03133291 pfam03133, TTL, Tubulin-tyrosine ligase family 4e-62
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family Back     alignment and domain information 
 Score =  196 bits (500), Expect = 4e-62
 Identities = 69/162 (42%), Positives = 100/162 (61%), Gaps = 5/162 (3%)

Query: 32  VGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH- 90
           + G+KFD+RLYVLVTS  PL+ Y+++ G  RF +VKY  ++++LD++ +HLTN S+QK  
Sbjct: 112 IDGRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKS 171

Query: 91  ---GADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYI-MANDK 146
                DYN  +G K +L N   YLE    ++I  ++ + I   I+ +    S + +    
Sbjct: 172 SSLNEDYNEPNGHKWSLFNFWKYLEEKDKEEIWLEIESIIIKTILAAEVEASRLNVQPLY 231

Query: 147 HCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISP 188
           +CFE YG+D +ID  LKPWL+EVNASPSL  TT  D  L   
Sbjct: 232 NCFELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQ 273

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 100.0
KOG2156|consensus662 100.0
KOG2157|consensus497 100.0
KOG2158|consensus565 99.96
KOG2155|consensus631 99.8
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 99.7
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 97.91
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 97.64
PRK10446300 ribosomal protein S6 modification protein; Provisi 97.53
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 97.43
PLN02941328 inositol-tetrakisphosphate 1-kinase 97.35
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 97.2
PRK14570364 D-alanyl-alanine synthetase A; Provisional 97.03
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 96.95
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 96.94
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 96.84
PRK14569296 D-alanyl-alanine synthetase A; Provisional 96.77
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 96.69
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 96.54
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 96.51
PRK14571299 D-alanyl-alanine synthetase A; Provisional 96.5
PRK05246316 glutathione synthetase; Provisional 96.28
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 96.25
PRK14572347 D-alanyl-alanine synthetase A; Provisional 96.23
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 95.98
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 95.81
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 95.6
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 94.48
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 94.21
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 93.41
PLN02257434 phosphoribosylamine--glycine ligase 93.25
PRK06524493 biotin carboxylase-like protein; Validated 92.58
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 92.5
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 92.21
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 90.71
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 89.7
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 89.67
PLN02948 577 phosphoribosylaminoimidazole carboxylase 89.55
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 89.44
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 89.09
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 88.91
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 88.36
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 88.31
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 88.27
PRK05586447 biotin carboxylase; Validated 88.21
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 87.95
PRK12458338 glutathione synthetase; Provisional 87.43
PRK06849389 hypothetical protein; Provisional 87.36
PRK08462445 biotin carboxylase; Validated 87.16
PRK07178472 pyruvate carboxylase subunit A; Validated 87.13
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 87.02
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 86.92
PRK07206416 hypothetical protein; Provisional 84.84
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 84.7
PLN02735 1102 carbamoyl-phosphate synthase 84.64
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 84.61
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 84.26
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 83.79
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 83.7
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 83.44
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 83.01
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 81.1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information 
Probab=100.00  E-value=5.5e-46  Score=336.74  Aligned_cols=182  Identities=38%  Similarity=0.685  Sum_probs=103.0

Q ss_pred             cccccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCcccccccccccccccccccCC-
Q psy9339          14 AAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA-   92 (258)
Q Consensus        14 ~~~~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN~siqk~~~-   92 (258)
                      .....++|||+||+||+|++|||||||+||||||++|++||+|++||+|+|+.+|++...++.|.++||||+++|+..+ 
T Consensus        95 ~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~  174 (292)
T PF03133_consen   95 KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSES  174 (292)
T ss_dssp             CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS---------------------------
T ss_pred             hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccccccccccccccccccccc
Confidence            3567899999999999999999999999999999999999999999999999999865678899999999999999843 


Q ss_pred             --CC-CcccCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHh-----hhhhccCCCcceeecceEEEeCCCce
Q psy9339          93 --DY-NNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSV-----SYIMANDKHCFECYGYDIIIDNQLKP  164 (258)
Q Consensus        93 --~~-~~~~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~-----~~~l~~~~~~FellG~DfllD~~~kp  164 (258)
                        ++ ....|++|++..++.++..  |.+ .+.+|++|..+++.++.++     ...+....+|||+||+|||+|++++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kp  251 (292)
T PF03133_consen  175 NEEDSNEENGNKWSLDQFEEYLKE--GID-WEKIWEKICDIIIKTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKP  251 (292)
T ss_dssp             ---------EEEHHHHHHHCTTTS--SS--STTTCHHHHHHHHHHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-E
T ss_pred             ccccccccccccchhhhhhhhccc--CCC-cccchhhhhHHHHHHhhhhhhhhccccccccccccceeeeEEEecCCCeE
Confidence              22 2235789999999988875  344 3667888888888877777     33455678999999999999999999


Q ss_pred             EEEEeccCCCCCcCCccchhhhhhHHHHHHHHHHHHHhhh
Q psy9339         165 WLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLE  204 (258)
Q Consensus       165 wLLEVN~~P~l~~~~~~d~~~K~~~~~ll~~~~~~~~~~~  204 (258)
                      ||||||.+|++..+++.+..++.   +|   ++|+++.++
T Consensus       252 wLLEvN~~Psl~~~~~~~~~~~~---~l---i~d~l~i~v  285 (292)
T PF03133_consen  252 WLLEVNSNPSLSTSTPVDKELKP---QL---IDDLLKIVV  285 (292)
T ss_dssp             EEEEEESS------TTTHHHHHH---HH---HHHTTTTTS
T ss_pred             EEeeCCCCCCcccCCHhHHHHHH---HH---HHHHhEEEe
Confidence            99999999999888876544433   22   355555443

This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
>KOG2156|consensus Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>KOG2155|consensus Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3tig_A380 Tubulin Tyrosine Ligase Length = 380 3e-12
4i4t_F384 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-10
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380 Back     alignment and structure 
Iteration: 1

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 33  GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQK-HG 91
           G +KFD+R +VLV +      YL++ G  R  +  Y    T   +M  HLTN  +QK H 
Sbjct: 198 GHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHS 253
Query: 92  ADYNNIH-GGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAN---DKH 147
            +Y     G +M  +    YL ++   ++ N +   I  +I   L  +   ++      H
Sbjct: 254 KNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYH 313
Query: 148 CFECYGYDIIIDNQLKPWLIEVNASPS 174
            F+ +G+D ++D  LK WLIEVN +P+
Sbjct: 314 SFQLFGFDFMVDKNLKVWLIEVNGAPA 340
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 2e-49
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 Back     alignment and structure
 Score =  166 bits (421), Expect = 2e-49
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 33  GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA 92
           G +KFD+R +VLV +      YL++ G  R  +  Y        +M  HLTN  +QK  +
Sbjct: 198 GHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT--NFQDMTSHLTNHCIQKEHS 253

Query: 93  DY--NNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDK---H 147
                   G +M  +    YL ++   ++ N +   I  +I   L  +   ++      H
Sbjct: 254 KNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYH 313

Query: 148 CFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVND 182
            F+ +G+D ++D  LK WLIEVN +P+       +
Sbjct: 314 SFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYAE 348
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 100.0
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 97.78
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 97.77
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 97.35
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 97.27
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 97.22
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 97.2
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 96.99
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 96.99
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 96.99
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 96.98
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 96.94
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 96.91
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 96.84
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 96.83
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 96.75
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 96.68
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 96.57
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 96.38
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 96.26
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 96.03
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 95.9
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 95.77
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 95.53
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 95.33
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 95.21
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 94.4
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 94.37
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 94.14
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 94.05
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 93.85
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 93.76
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 93.73
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 93.56
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 93.19
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 92.61
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 92.47
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 92.24
3ouz_A446 Biotin carboxylase; structural genomics, center fo 92.07
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 92.0
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 91.87
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 91.67
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 91.47
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 91.25
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 91.21
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 91.2
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 90.75
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 90.48
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 89.99
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 89.74
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 89.51
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 89.43
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 89.2
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 88.86
3n6x_A474 Putative glutathionylspermidine synthase; domain o 87.21
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 86.72
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 86.35
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 85.39
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 84.94
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 84.29
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 84.09
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 82.18
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 80.74
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-46  Score=349.10  Aligned_cols=185  Identities=27%  Similarity=0.476  Sum_probs=133.9

Q ss_pred             ccceeeeccccCcccc--CCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCccccccccccccccccccc-CCC
Q psy9339          17 IIFKIVNIEEEDMTVV--GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH-GAD   93 (258)
Q Consensus        17 ~~~~IvQkYI~~PlLi--~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN~siqk~-~~~   93 (258)
                      ...+|||+||++|+|+  +|||||||+||||||  |+++|+|++|++|+|+.+|++  ++++|.++||||+|+||+ +++
T Consensus       180 ~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~--~~~~~~~~HLTN~~iqk~~~~~  255 (380)
T 3tig_A          180 GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHSKN  255 (380)
T ss_dssp             TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-----------------------------
T ss_pred             CCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc--cchhhhhhhccccccccccccc
Confidence            4689999999999999  999999999999998  999999999999999999985  578899999999999996 567


Q ss_pred             CCcc-cCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhhhcc---CCCcceeecceEEEeCCCceEEEEe
Q psy9339          94 YNNI-HGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAN---DKHCFECYGYDIIIDNQLKPWLIEV  169 (258)
Q Consensus        94 ~~~~-~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~~~~l~~---~~~~FellG~DfllD~~~kpwLLEV  169 (258)
                      |+.. +|++|++++|+.||++..|.++.+.+|++|+++|++++.|+++.+..   ..+|||+||+|||||++++||||||
T Consensus       256 y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEV  335 (380)
T 3tig_A          256 YGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEV  335 (380)
T ss_dssp             -------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEE
T ss_pred             cccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEE
Confidence            8764 58899999999999876677777889999999999999999887765   3689999999999999999999999


Q ss_pred             ccCCCCCcCCccchhhhhhHHHHHHHHHHHHHhhhhhhccCCCCCCcc
Q psy9339         170 NASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPK  217 (258)
Q Consensus       170 N~~P~l~~~~~~d~~~K~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~k  217 (258)
                      |.+|++...         .+.+   ++++++++++++.|+++....+.
T Consensus       336 N~~P~~~q~---------~i~~---l~~~~~~iavdp~f~~~~~~~~~  371 (380)
T 3tig_A          336 NGAPACAQK---------LYAE---LCKGIVDLAISSVFPLNEENHKP  371 (380)
T ss_dssp             ESSCCCCTT---------THHH---HHHHHHHHTTTTTSCCCC-----
T ss_pred             eCCCCccHH---------hHHH---HHHHHHHHhcccccCCccccCCC
Confidence            999999631         3343   35889999999999999655543
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 97.94
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 97.63
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 97.49
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 97.19
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 96.03
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 95.14
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 94.61
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 94.44
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 94.01
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 93.57
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 93.07
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 87.85
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 84.4
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 84.26
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 84.06
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=8.5e-06  Score=66.75  Aligned_cols=29  Identities=10%  Similarity=0.103  Sum_probs=25.4

Q ss_pred             CcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339         147 HCFECYGYDIIIDNQLKPWLIEVNASPSL  175 (258)
Q Consensus       147 ~~FellG~DfllD~~~kpwLLEVN~~P~l  175 (258)
                      .+..+.|+||++|.+|+||+||||.+|..
T Consensus       152 ~~~~~~gvD~~~~~dG~~yvlEvN~~~~~  180 (206)
T d1i7na2         152 GGLDICAVKAVHGKDGKDYIFEVMDCSMP  180 (206)
T ss_dssp             GCCSEEEEEEEEETTSCEEEEEEECTTCC
T ss_pred             cccceeeEEEEEcCCCCEEEEEEcCCCcc
Confidence            34568999999999999999999998854
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure