Psyllid ID: psy9436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MIAVALSIEDTRLATLVTEKTTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGYK
Secondary Structure (PSIPRED)
cEEEEEEEcccEEEEEEEccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccEEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccEEEEEEccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccEEEcHHHHHHEEcccccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MIAVALSIEDTRLATLVTekttstkrnighfdrkrkqARHESKIRAVEKLELFSIENArnqsesmtphklDRGAKALKRLKvyegippkyarrqrlcvptalrtvclkpgrsycsvgrishevgWKYKTIVRHLERKRREKSIEKIKlhtvylipcldcesnltkkagkqvkkatfpltkqintfgyk
Flexible Loop (DISEMBL)
miavalsiedtrlatlvtekttstkrnighfdrkrkqarheskiraveklelfsienarnqsesmtphkldrgakALKRLKVyegippkyarrqrlcvptalrtvclkpgrsycsvgrishevgwkyktivrhlerkrreksiekiklhtvylipcldcESNLTKKAgkqvkkatfpltkqintfgyk
Low Complexity Region (SEG)
MIAVALSIEDTRLATLVTEKTTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLerkrreksiekikLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGYK
Disordered region (IsUnstruct)
***************************************************************************ALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAG**VKKATFPLT*********
Disordered Region (DISOPRED)
*IAVA**IEDTRLATLVTEKTTSTKRNIGHFDRKRKQ*****KIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTV************************FPLTKQINTFGY*
Disordered Region (DISEMBL)
MIAVALSIEDTRLATLVTEKTTSTKRNIGH***********SKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGYK
Disordered Region (DISPRO)
MIAVALSIEDTRLATLVTEKTTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAVALSIEDTRLATLVTEKTTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q8MUR4	204	60S ribosomal protein L13	N/A	N/A	0.617	0.568	0.5	2e-29
Q962U0	204	60S ribosomal protein L13	N/A	N/A	0.617	0.568	0.491	9e-29
Q9VNE9	205	60S ribosomal protein L13	yes	N/A	0.622	0.570	0.44	2e-22
Q9P720	202	60S ribosomal protein L16	N/A	N/A	0.420	0.391	0.544	1e-21
O42991	197	60S ribosomal protein L16	yes	N/A	0.590	0.563	0.419	9e-21
Q91487	189	60S ribosomal protein L13	N/A	N/A	0.420	0.417	0.544	2e-20
O43004	197	60S ribosomal protein L16	no	N/A	0.420	0.401	0.569	3e-20
Q3SZ90	203	60S ribosomal protein L13	yes	N/A	0.563	0.522	0.452	4e-20
O42848	197	60S ribosomal protein L16	yes	N/A	0.420	0.401	0.556	5e-20
Q9XSU0	203	60S ribosomal protein L13	yes	N/A	0.420	0.389	0.531	5e-20

>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 79/124 (63%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK +RG  AL+RL+ Y+G PP Y  R+R+ VP ALR  CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKY+ +VR LE KR+ K++ K+                +TK AG +V KAT P T  I 
Sbjct: 148 GWKYREVVRKLEDKRKFKAVHKVAYERKL--------KKITKDAGAKVSKATAPFTAVIQ 199

Query: 184 TFGY 187
           ++GY
Sbjct: 200 SYGY 203

Choristoneura parallela (taxid: 106495)

>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1

 Score =  126 bits (316), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK +RG  AL+RL+ Y+G PP Y  R+R+ VP ALR  CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKY+ +VR LE KR+ KS++        L+        +TK++G++V K T P T  I 
Sbjct: 148 GWKYRDVVRKLENKRKVKSVK--------LMAYEKKLKRITKESGEKVAKTTAPFTAVIQ 199

Query: 184 TFGY 187
           ++GY
Sbjct: 200 SYGY 203

Spodoptera frugiperda (taxid: 7108)

>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 8/125 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL RL+V++GIP  Y +R+R+ VP A+R + L+  R YC VGR+SHEV
Sbjct: 88  GMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GW Y+ +++ LERKR+ K    +K H   L         LT KA + + KA  P  K I 
Sbjct: 148 GWHYQDVIKSLERKRKAKLRVTLK-HNREL-------KKLTVKARENIAKAAEPFNKIIK 199

Query: 184 TFGYK 188
           ++GY+
Sbjct: 200 SYGYE 204

Drosophila melanogaster (taxid: 7227)

>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-16 PE=3 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RGA AL+RLKV+EG+PP Y +++++ VP ALR + L+PGR +C+VGR+S EV
Sbjct: 88  GMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEV 147

Query: 124 GWKYKTIVRHLERKRREKS 142
           GWKY+ +V  LE +R+ K 
Sbjct: 148 GWKYEDVVSRLEERRKAKG 166

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O42991|RL16B_SCHPO 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl16b PE=1 SV=1

 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 13/124 (10%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+ L+  EGIPP + +++R+ VP ALR + LKPGR YC+VGR+S EV
Sbjct: 87  GMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEV 146

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKY  IV  LE +R      K+K    Y       ++ L K+      K   P+ ++++
Sbjct: 147 GWKYNDIVAKLEERR------KVKSAAFY-------QAKLAKQKKIASAKEASPVNQKLS 193

Query: 184 TFGY 187
            FGY
Sbjct: 194 QFGY 197

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 58/79 (73%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLKV++G+PP Y +R+R+ VP AL+ V LKP R +  +GR++HEV
Sbjct: 72  GMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEV 131

Query: 124 GWKYKTIVRHLERKRREKS 142
           GWKY+ I   LE KR+EK+
Sbjct: 132 GWKYQAITATLEEKRKEKA 150

Salmo trutta (taxid: 8032)

>sp|O43004|RL16C_SCHPO 60S ribosomal protein L16-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl16c PE=3 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 56/79 (70%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  ALK L+  EGIPP + +++RL VP ALR + LKP R YC++GR+S EV
Sbjct: 87  GMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEV 146

Query: 124 GWKYKTIVRHLERKRREKS 142
           GWKYK IV  LE +R+ KS
Sbjct: 147 GWKYKNIVSKLEERRKIKS 165

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLKV++GIPP Y +++R+ VP AL+ V LKP R +  +GR++HEV
Sbjct: 86  GMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGK 169
           GWKY+ +   LE KR+EK+    +     +      E N+ KK GK
Sbjct: 146 GWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGK 191

Bos taurus (taxid: 9913)

>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl16a PE=1 SV=1

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 56/79 (70%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+ L+  EGIPP + +++R+ VP ALR + LKPGR YC+VGR+S EV
Sbjct: 87  GMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEV 146

Query: 124 GWKYKTIVRHLERKRREKS 142
           GWKY  IV  LE +R+ KS
Sbjct: 147 GWKYSDIVSKLEERRKVKS 165

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XSU0|RL13A_CANFA 60S ribosomal protein L13a OS=Canis familiaris GN=RPL13A PE=1 SV=2

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 57/79 (72%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL RLKV++GIPP Y +++R+ VP AL+ V LKP R +  +GR++HEV
Sbjct: 86  GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145

Query: 124 GWKYKTIVRHLERKRREKS 142
           GWKY+ +   LE KR+EK+
Sbjct: 146 GWKYQAVTATLEEKRKEKA 164

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
110456514	157	putative 60S ribosomal protein L13A [Dia	0.372	0.445	0.985	4e-34
380022154	163	PREDICTED: 60S ribosomal protein L13a-li	0.622	0.717	0.568	6e-32
340709161	204	PREDICTED: 60S ribosomal protein L13a-li	0.617	0.568	0.572	6e-32
350413093	204	PREDICTED: 60S ribosomal protein L13a-li	0.617	0.568	0.572	8e-32
66500885	204	PREDICTED: 60S ribosomal protein L13a is	0.617	0.568	0.572	9e-32
156544548	204	PREDICTED: 60S ribosomal protein L13a-li	0.617	0.568	0.564	4e-31
307188111	196	60S ribosomal protein L13a [Camponotus f	0.643	0.617	0.558	4e-31
332029842	252	60S ribosomal protein L13a [Acromyrmex e	0.617	0.460	0.556	4e-31
383862429	204	PREDICTED: 60S ribosomal protein L13a-li	0.617	0.568	0.556	9e-31
264667421	204	ribosomal protein L13A [Chrysomela tremu	0.622	0.573	0.536	2e-30

>gi|110456514|gb|ABG74718.1| putative 60S ribosomal protein L13A [Diaphorina citri]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/70 (98%), Positives = 69/70 (98%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV
Sbjct: 88  GMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 147

Query: 124 GWKYKTIVRH 133
           GWKYKTIVRH
Sbjct: 148 GWKYKTIVRH 157

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022154|ref|XP_003694918.1| PREDICTED: 60S ribosomal protein L13a-like isoform 2 [Apis florea]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 84/125 (67%), Gaps = 8/125 (6%)

Query: 63  ESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHE 122
             M PHK  RG  AL+RLKVYEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHE
Sbjct: 46  SGMIPHKTQRGKDALRRLKVYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHE 105

Query: 123 VGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQI 182
           VGWKYK +VR LE KRR +SI +++          D    LTK+AG+ V KAT P T  I
Sbjct: 106 VGWKYKAVVRTLENKRRVRSILEVQKR--------DKLKKLTKQAGQTVAKATAPYTAII 157

Query: 183 NTFGY 187
           N FGY
Sbjct: 158 NNFGY 162

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709161|ref|XP_003393181.1| PREDICTED: 60S ribosomal protein L13a-like [Bombus terrestris]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 85/124 (68%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK +RG  AL+RLKVYEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTERGKDALRRLKVYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKYK +VR LE KRR +SI +++          D    LTK+AG+ V KAT P T  IN
Sbjct: 148 GWKYKAVVRTLENKRRVRSILEVQKR--------DKLKKLTKQAGQTVAKATAPYTAIIN 199

Query: 184 TFGY 187
            FGY
Sbjct: 200 NFGY 203

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413093|ref|XP_003489877.1| PREDICTED: 60S ribosomal protein L13a-like [Bombus impatiens]

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 84/124 (67%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLKVYEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTQRGKDALRRLKVYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKYK +VR LE KRR +SI +++          D    LTK+AG+ V KAT P T  IN
Sbjct: 148 GWKYKAVVRTLENKRRVRSIVEVQKR--------DKLKKLTKQAGQTVAKATAPYTAIIN 199

Query: 184 TFGY 187
            FGY
Sbjct: 200 NFGY 203

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500885|ref|XP_623813.1| PREDICTED: 60S ribosomal protein L13a isoform 2 [Apis mellifera] gi|380022152|ref|XP_003694917.1| PREDICTED: 60S ribosomal protein L13a-like isoform 1 [Apis florea]

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 84/124 (67%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLKVYEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTQRGKDALRRLKVYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKYK +VR LE KRR +SI +++          D    LTK+AG+ V KAT P T  IN
Sbjct: 148 GWKYKAVVRTLENKRRVRSILEVQKR--------DKLKKLTKQAGQTVAKATAPYTAIIN 199

Query: 184 TFGY 187
            FGY
Sbjct: 200 NFGY 203

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544548|ref|XP_001607858.1| PREDICTED: 60S ribosomal protein L13a-like [Nasonia vitripennis]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 84/124 (67%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLK YEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTQRGKDALRRLKTYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKYK +VR LE KRR KSI +++          D    LTK+AG+ V K T P T+ IN
Sbjct: 148 GWKYKAVVRTLENKRRVKSIVEVQKR--------DKLKKLTKQAGEAVAKQTAPYTQIIN 199

Query: 184 TFGY 187
           +FGY
Sbjct: 200 SFGY 203

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188111|gb|EFN72943.1| 60S ribosomal protein L13a [Camponotus floridanus]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/129 (55%), Positives = 83/129 (64%), Gaps = 8/129 (6%)

Query: 59  RNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGR 118
           R     M PHK  RG  AL+RLKVYEG PP Y RR+R+ VP A+R +CLKPGR YC VGR
Sbjct: 75  RKTVRGMIPHKTQRGKDALRRLKVYEGCPPPYNRRKRVVVPGAMRVMCLKPGRKYCHVGR 134

Query: 119 ISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPL 178
           +SHEVGWKYK++VR LE KRR K I  I+               LTK+AG+ V KA  P 
Sbjct: 135 LSHEVGWKYKSVVRTLENKRRVKEILDIQKRNKL--------KKLTKQAGEAVSKAAEPY 186

Query: 179 TKQINTFGY 187
           TK IN FGY
Sbjct: 187 TKIINDFGY 195

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029842|gb|EGI69711.1| 60S ribosomal protein L13a [Acromyrmex echinatior]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 83/124 (66%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLKVYEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHEV
Sbjct: 136 GMIPHKTQRGKDALRRLKVYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHEV 195

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKYK +VR LE KRR ++I +++               LTK+AG+ V KAT P T  IN
Sbjct: 196 GWKYKDVVRTLENKRRARAILEVQKRNKL--------KKLTKQAGESVAKATAPYTAIIN 247

Query: 184 TFGY 187
            FGY
Sbjct: 248 NFGY 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862429|ref|XP_003706686.1| PREDICTED: 60S ribosomal protein L13a-like [Megachile rotundata]

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 83/124 (66%), Gaps = 8/124 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL+RLK+YEG PP Y RR+R+ VP A+R +CLKPGR YC VGR+SHEV
Sbjct: 88  GMIPHKTQRGKDALRRLKIYEGCPPPYDRRKRVVVPGAMRVMCLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKYK +V  LE KRR +SI +++          D    LTK+AG+ V KAT P T  IN
Sbjct: 148 GWKYKAVVHTLENKRRVRSILEVQKR--------DKLKKLTKQAGQTVTKATAPYTAIIN 199

Query: 184 TFGY 187
            FGY
Sbjct: 200 DFGY 203

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667421|gb|ACY71296.1| ribosomal protein L13A [Chrysomela tremula]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 86/125 (68%), Gaps = 8/125 (6%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK +RG +AL+RLK YEGIPP Y RR+R+ VP ALR +CLKPGR YC VGR+SHEV
Sbjct: 88  GMLPHKTERGKQALRRLKAYEGIPPPYDRRKRVVVPGALRVICLKPGRKYCHVGRLSHEV 147

Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
           GWKY+++VR LE KR+ K++  I+          D    +TK A ++V K T P T  IN
Sbjct: 148 GWKYQSVVRTLESKRKVKAVLSIRKR--------DKLKKITKAASEKVAKKTQPFTAVIN 199

Query: 184 TFGYK 188
           ++GYK
Sbjct: 200 SYGYK 204

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
ASPGD|ASPL0000014757	202	rpl16a [Emericella nidulans (t	0.372	0.346	0.614	6.3e-21
UNIPROTKB|G4MLS0	202	MGG_05449 "60S ribosomal prote	0.372	0.346	0.585	4.4e-20
FB|FBgn0037351	205	RpL13A "Ribosomal protein L13A	0.617	0.565	0.395	4e-19
CGD|CAL0005216	200	RPL16A [Candida albicans (taxi	0.372	0.35	0.557	5.8e-18
UNIPROTKB|Q5AB87	200	RPL16A "Likely cytosolic ribos	0.372	0.35	0.557	5.8e-18
POMBASE|SPBC2G2.05	197	rpl1603 "60S ribosomal protein	0.372	0.355	0.585	5.8e-18
UNIPROTKB|Q3SZ90	203	RPL13A "60S ribosomal protein	0.558	0.517	0.409	1.6e-17
POMBASE|SPAC23A1.11	197	rpl1602 "60S ribosomal protein	0.372	0.355	0.571	1.6e-17
POMBASE|SPBC839.13c	197	rpl1601 "60S ribosomal protein	0.372	0.355	0.571	1.6e-17
ZFIN|ZDB-GENE-030131-168	205	rpl13a "ribosomal protein L13a	0.606	0.556	0.401	2e-17

ASPGD|ASPL0000014757 rpl16a [Emericella nidulans (taxid:162425)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 43/70 (61%), Positives = 56/70 (80%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RGA AL+RLKV+EG+PP Y +++R+ VP ALR + L+PGR YC+VGR+SHEVG
Sbjct:    89 MIPHKTARGAAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 148

Query:   125 WKYKTIVRHL 134
             WKY+ +V  L
Sbjct:   149 WKYQDVVARL 158

GO:0003735 "structural constituent of ribosome" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G4MLS0 MGG_05449 "60S ribosomal protein L16" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 41/70 (58%), Positives = 55/70 (78%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL+RLKV+EG+PP Y +++++ VP ALR + L+PGR YC+VGR+SHEVG
Sbjct:    89 MMPHKTARGTAALERLKVFEGVPPPYDKQKKMVVPQALRVLRLQPGRKYCTVGRLSHEVG 148

Query:   125 WKYKTIVRHL 134
             WKY+ +V  L
Sbjct:   149 WKYQDVVARL 158

GO:0043581 "mycelium development" evidence=IEP

FB|FBgn0037351 RpL13A "Ribosomal protein L13A" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 49/124 (39%), Positives = 68/124 (54%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL RL+V++GIP  Y +R+R+ VP A+R + L+  R YC VGR+SHEVG
Sbjct:    89 MIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVG 148

Query:   125 WKYKTIVRHLXXXXXXXXXXXXXLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINT 184
             W Y+ +++ L              H   L         LT KA + + KA  P  K I +
Sbjct:   149 WHYQDVIKSLERKRKAKLRVTLK-HNREL-------KKLTVKARENIAKAAEPFNKIIKS 200

Query:   185 FGYK 188
             +GY+
Sbjct:   201 YGYE 204

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0007219 "Notch signaling pathway" evidence=IGI

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0005840 "ribosome" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

CGD|CAL0005216 RPL16A [Candida albicans (taxid:5476)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 39/70 (55%), Positives = 53/70 (75%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL+RLKV+EG+PP Y +++R+ VP ALR + LKPGR Y +VG++S  VG
Sbjct:    88 MIPHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGRKYTTVGKLSSAVG 147

Query:   125 WKYKTIVRHL 134
             WKY+++V  L
Sbjct:   148 WKYESVVEKL 157

GO:0032040 "small-subunit processome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q5AB87 RPL16A "Likely cytosolic ribosomal protein L16" [Candida albicans SC5314 (taxid:237561)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 39/70 (55%), Positives = 53/70 (75%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL+RLKV+EG+PP Y +++R+ VP ALR + LKPGR Y +VG++S  VG
Sbjct:    88 MIPHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGRKYTTVGKLSSAVG 147

Query:   125 WKYKTIVRHL 134
             WKY+++V  L
Sbjct:   148 WKYESVVEKL 157

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0030447 "filamentous growth" evidence=IMP

GO:0032040 "small-subunit processome" evidence=IDA

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

POMBASE|SPBC2G2.05 rpl1603 "60S ribosomal protein L13/L16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/70 (58%), Positives = 50/70 (71%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  ALK L+  EGIPP + +++RL VP ALR + LKP R YC++GR+S EVG
Sbjct:    88 MLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVG 147

Query:   125 WKYKTIVRHL 134
             WKYK IV  L
Sbjct:   148 WKYKNIVSKL 157

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|Q3SZ90 RPL13A "60S ribosomal protein L13a" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 43/105 (40%), Positives = 59/105 (56%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL+RLKV++GIPP Y +++R+ VP AL+ V LKP R +  +GR++HEVG
Sbjct:    87 MLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVG 146

Query:   125 WKYKTIVRHLXXXXXXXXXXXXXLHTVYLIPCLDCESNLTKKAGK 169
             WKY+ +   L                  +      E N+ KK GK
Sbjct:   147 WKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGK 191

GO:1901194 "negative regulation of formation of translation preinitiation complex" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

POMBASE|SPAC23A1.11 rpl1602 "60S ribosomal protein L13/L16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL+ L+  EGIPP + +++R+ VP ALR + LKPGR YC+VGR+S EVG
Sbjct:    88 MLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVG 147

Query:   125 WKYKTIVRHL 134
             WKY  IV  L
Sbjct:   148 WKYSDIVSKL 157

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

POMBASE|SPBC839.13c rpl1601 "60S ribosomal protein L13/L16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL+ L+  EGIPP + +++R+ VP ALR + LKPGR YC+VGR+S EVG
Sbjct:    88 MLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVG 147

Query:   125 WKYKTIVRHL 134
             WKY  IV  L
Sbjct:   148 WKYNDIVAKL 157

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

ZFIN|ZDB-GENE-030131-168 rpl13a "ribosomal protein L13a" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 49/122 (40%), Positives = 64/122 (52%)

Query:    65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
             M PHK  RG  AL RLKV++GIPP Y +R+R+ VP AL+ V LKP R +  +GR++HEVG
Sbjct:    89 MLPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVG 148

Query:   125 WKYKTIVRHLXXXXXXXXXXXXXLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINT 184
             WKY+ I   L                V        E  LTK+A K V+      T  +  
Sbjct:   149 WKYQAITATLEEKRKEKAKLRYSKKKV--------EMKLTKQAEKNVESKIAVYTDVLKK 200

Query:   185 FG 186
             +G
Sbjct:   201 YG 202

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P26784	RL16A_YEAST	No assigned EC number	0.5308	0.4308	0.4070	yes	N/A
P35427	RL13A_RAT	No assigned EC number	0.5316	0.4202	0.3891	yes	N/A
Q9SVR0	R13A3_ARATH	No assigned EC number	0.5063	0.4202	0.3834	yes	N/A
P19253	RL13A_MOUSE	No assigned EC number	0.5316	0.4202	0.3891	yes	N/A
O42848	RL16A_SCHPO	No assigned EC number	0.5569	0.4202	0.4010	yes	N/A
P40429	RL13A_HUMAN	No assigned EC number	0.5316	0.4202	0.3891	yes	N/A
Q5RA38	RL13A_PONAB	No assigned EC number	0.5316	0.4202	0.3891	yes	N/A
Q9XSU0	RL13A_CANFA	No assigned EC number	0.5316	0.4202	0.3891	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
PTZ00068	202	PTZ00068, PTZ00068, 60S ribosomal protein L13a; Pr	2e-28
TIGR01077	142	TIGR01077, L13_A_E, ribosomal protein L13, archaea	6e-16
PRK06394	146	PRK06394, rpl13p, 50S ribosomal protein L13P; Revi	1e-05
COG0102	148	COG0102, RplM, Ribosomal protein L13 [Translation,	0.004

>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional

 Score =  104 bits (262), Expect = 2e-28
 Identities = 41/79 (51%), Positives = 55/79 (69%)

Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RGA ALKRLKV+EG+P  Y + +R+ +P+ALR + LKP R Y  +G +S  V
Sbjct: 85  GMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSALRVLRLKPERPYTVLGDLSAHV 144

Query: 124 GWKYKTIVRHLERKRREKS 142
           GWKY  +V  LE KR+E++
Sbjct: 145 GWKYADVVAKLEEKRKERA 163

Length = 202

>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M PHK  RG  AL+RLKVY GIPP+  +++R+ VP AL    L P R Y ++G ++  +G
Sbjct: 81  MLPHKTARGRAALRRLKVYVGIPPELDKKKRVVVPEAL-VSRLSPTRKYVTLGELAKFLG 139

Query: 125 WKY 127
           WKY
Sbjct: 140 WKY 142

This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by model TIGR01066 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 142

>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M P+K  RG +ALKRLKVY G+P +   ++   +  A   +       Y ++G +S E+G
Sbjct: 86  MLPYKKPRGREALKRLKVYVGVPKELEGKEFEVIDEAD--LSRLSTIKYVTLGEVSKELG 143

Query: 125 WKY 127
            K+
Sbjct: 144 AKF 146

Length = 146

>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 104
           M P     G  ALKRLKVY GIP  +  ++    P AL  
Sbjct: 109 MLPKN-PLGRAALKRLKVYAGIPHPHEAQK----PEALEL 143

Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PTZ00068	202	60S ribosomal protein L13a; Provisional	100.0
KOG3204|consensus	197		100.0
TIGR01077	142	L13_A_E ribosomal protein L13, archaeal/eukaryotic	99.94
PRK06394	146	rpl13p 50S ribosomal protein L13P; Reviewed	99.91
PF00572	128	Ribosomal_L13: Ribosomal protein L13; InterPro: IP	99.49
TIGR01066	140	rplM_bact ribosomal protein L13, bacterial type. T	99.45
PRK09216	144	rplM 50S ribosomal protein L13; Reviewed	99.4
PLN00205	191	ribisomal protein L13 family protein; Provisional	99.37
COG0102	148	RplM Ribosomal protein L13 [Translation, ribosomal	99.36
CHL00159	143	rpl13 ribosomal protein L13; Validated	99.35
cd00392	114	Ribosomal_L13 Ribosomal protein L13. Protein L13,	99.09
KOG3203|consensus	165		97.63

>PTZ00068 60S ribosomal protein L13a; Provisional

Probab=100.00  E-value=1.9e-48  Score=328.88  Aligned_cols=159  Identities=33%  Similarity=0.499  Sum_probs=144.1

Q ss_pred             ccccccccchhhHHhHhhhccCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceeccc
Q psy9436          21 TTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT  100 (188)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~  100 (188)
                      |.++.++.-.|..-.+..++.||.. ++++++.|++|||||||||||||+++|++||+||+||+|+|+||+.+++++||+
T Consensus        43 TG~k~~~K~~y~~~lk~~~~~nP~~-g~~~~r~P~~Il~raVrGMLPkk~~~Gr~alkrLkVy~G~php~~~~k~~vvp~  121 (202)
T PTZ00068         43 SGSLFRNKVKYEEFLRKRMNTNPRR-GPFHHRAPSDIFWRTVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPS  121 (202)
T ss_pred             ecchhhheeeeEeeeEeeccCCCCc-chhcccCHHHHHHHHHhhhCCCCChhHHHHHhCCEEecCCCCchhccCcccccc
Confidence            3445555555555444444455543 889999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhccCCCCCeeehhhhHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhc-chHH
Q psy9436         101 ALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKAT-FPLT  179 (188)
Q Consensus       101 Alrv~rlkp~rKy~tLGeLs~evGWKy~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~-~~~~  179 (188)
                      |+++.+|+|+++||+|||||++|||+|+|||++||++|++++++||++|++        ..+++++|++++++++ .+++
T Consensus       122 A~r~~rl~~~~ky~~lg~ls~~vGwky~~vv~~le~krk~k~~~~~~~k~~--------~~k~~~~a~~~~~~~~~~~~~  193 (202)
T PTZ00068        122 ALRVLRLKPERPYTVLGDLSAHVGWKYADVVAKLEEKRKERAAAYYKKKVK--------LRKAWKEARKKALAKLPKAIV  193 (202)
T ss_pred             hhhhhccCCCCceeeHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcchHHH
Confidence            999999999999999999999999999999999999999999999999999        9999999999999988 7999


Q ss_pred             HHHhhcCCC
Q psy9436         180 KQINTFGYK  188 (188)
Q Consensus       180 ~~L~~~Gy~  188 (188)
                      ++|++|||+
T Consensus       194 ~~l~~~gy~  202 (202)
T PTZ00068        194 AVLKKFGYA  202 (202)
T ss_pred             HHHHHcCCC
Confidence            999999995

>KOG3204|consensus

Probab=100.00  E-value=1.3e-44  Score=304.40  Aligned_cols=134  Identities=39%  Similarity=0.611  Sum_probs=130.4

Q ss_pred             HHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhccc
Q psy9436          47 VEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWK  126 (188)
Q Consensus        47 ~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evGWK  126 (188)
                      +++--+-|..|||++||||+||||+||++|++||++|+|||+|||+++++++|.|++|++|+|++|||+||+||||||||
T Consensus        63 g~~hfr~ps~i~~~~vrgm~~~kt~rg~aal~~l~~~eGip~~~dk~~r~v~p~a~~v~~lk~~~K~c~lG~L~~eVGWk  142 (197)
T KOG3204|consen   63 GPFHFRAPSRILQKAVRGMYPHKTKRGRAALERLRVFEGIPPPYDKQKRLVVPVAFQVLRLKPYKKYCLLGRLSHEVGWK  142 (197)
T ss_pred             CcchhhhHHHHHHHhhccccccCCCccHHHHHHHHHhCCCCChhhhcCCccCCcceeeecccCCceeEEeccchhhhcch
Confidence            44556889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhcCCC
Q psy9436         127 YKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGYK  188 (188)
Q Consensus       127 y~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~Gy~  188 (188)
                      ||+|+++||+|||+|+++||++|++        +++++++|++|+++++++++++|+++||+
T Consensus       143 yq~vtatLEeKRKeK~~~~y~kKkq--------l~kl~~~Aekn~~kkidky~e~l~~~g~~  196 (197)
T KOG3204|consen  143 YQAVTATLEEKRKEKAKIHYQKKKQ--------LMRLRKQAEKNVEKKIDKYTEVLKTHGLL  196 (197)
T ss_pred             hHHHHHHHHHHHhHhhhhhHHHHHH--------HHHHHHHHHHHHHHhHHHHHHHHhhcccC
Confidence            9999999999999999999999999        99999999999999999999999999995

>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic

Probab=99.94  E-value=2.8e-28  Score=196.36  Aligned_cols=82  Identities=39%  Similarity=0.694  Sum_probs=79.7

Q ss_pred             chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhc
Q psy9436          45 RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG  124 (188)
Q Consensus        45 ~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evG  124 (188)
                      ++++++++.|++||+++||||||+++.+|+.+++||+||+|+|+||+.++++++|+|+ +.+++|.||||+|||||+.||
T Consensus        61 ~~~~~~~r~P~~il~~aVrGMLPk~~~~Gr~~~krLkvy~G~~h~~~~qk~~~~~~a~-~~~~~~~~~~~~lg~l~~~~G  139 (142)
T TIGR01077        61 RRGPFFPRAPSRIFRRTVRGMLPHKTARGRAALRRLKVYVGIPPELDKKKRVVVPEAL-VSRLSPTRKYVTLGELAKFLG  139 (142)
T ss_pred             CHHHhhhcCHHHHHHHHHHHhCCCCChhHHHHHhCcEEecCCCCCccccCccccChhh-hhccCCCCceEEHHHHHHHhC
Confidence            5688999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             cch
Q psy9436         125 WKY  127 (188)
Q Consensus       125 WKy  127 (188)
                      |||
T Consensus       140 ~k~  142 (142)
T TIGR01077       140 WKF  142 (142)
T ss_pred             CcC
Confidence            997

This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.

>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed

Probab=99.91  E-value=9e-25  Score=176.89  Aligned_cols=100  Identities=28%  Similarity=0.399  Sum_probs=88.4

Q ss_pred             ccccccchhhHHhHhhhccCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccch
Q psy9436          23 STKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTAL  102 (188)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Al  102 (188)
                      ++.|.+-.|........+.||.++++++++.|++||+++|+||||+|+.+|+.+++||+||+|+|.||..++.+++|.|+
T Consensus        44 ~K~~~~~~y~~~~~~k~~~np~~~~~~~~r~P~~il~~AV~gMLP~kn~~gr~~~~rLkvy~G~~h~~~~qkp~~~~~a~  123 (146)
T PRK06394         44 NRERVIEKYKQRRERGSHYNPYRNGPKYPRRPDRIFKRTIRGMLPYKKPRGREALKRLKVYVGVPKELEGKEFEVIDEAD  123 (146)
T ss_pred             chhhheeeEeCCCCCcccCCCCChHHhhhcCHHHHHHHHHHhcCCCCChhHHHHHhCcEEecCCCCCcccCCCEEecHHH
Confidence            34566666655555555677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCeeehhhhHHHhc
Q psy9436         103 RTVCLKPGRSYCSVGRISHEVG  124 (188)
Q Consensus       103 rv~rlkp~rKy~tLGeLs~evG  124 (188)
                      . .++. +|+||+|||||+++|
T Consensus       124 ~-~~~~-~~k~~~lgel~~~~G  143 (146)
T PRK06394        124 L-SRLS-TIKYVTLGEVSKELG  143 (146)
T ss_pred             H-hccC-CCCcEEHHHHHHHhC
Confidence            7 5776 699999999999999

>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.49  E-value=1.3e-14  Score=115.19  Aligned_cols=76  Identities=24%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             ccccccchhhHHhHhhhccCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecc
Q psy9436          23 STKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP   99 (188)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP   99 (188)
                      ..+|..-.|.+..-.-..-...++.+++++.|+.||+++||||||+ +.+|+++|+||+||.|.|.||+.++.++||
T Consensus        52 G~k~~~k~y~~h~~~~g~~~~~~~~~~~~~~P~~i~~~aVrgMLP~-n~~g~~~l~rL~vy~g~~hp~~~~~~~~~~  127 (128)
T PF00572_consen   52 GKKWRQKVYYRHTGYPGGLKNPTAKGLHEKDPSRILKRAVRGMLPK-NKLGREALKRLKVYPGEPHPHAAQKPVVLE  127 (128)
T ss_dssp             SHHHHHHHHHHEHSSSTSCEEEECHHHHCSSHHHHHHHHHHTTSTT-SHHHHHHHTTEEEESSSSCSTTSSSCBEEE
T ss_pred             CCeecceEEEeecccchhhcccchhhhhhcCHHHHHHHHHHHHCCC-ChhhhHHhhceEEECCCCCChhccCCEeCC
Confidence            3455555555422222222334678888999999999999999997 999999999999999999999999999886

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....

>TIGR01066 rplM_bact ribosomal protein L13, bacterial type

Probab=99.45  E-value=5.7e-14  Score=113.41  Aligned_cols=57  Identities=21%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             cCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          41 ESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        41 ~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      -+.+++++++++.|++||+++|||||| |+.+|+++|+||+||+|.|.||+.++-..+
T Consensus        82 ~k~~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkvy~G~~hp~~~q~p~~~  138 (140)
T TIGR01066        82 LKSRTFEEMIARKPERVLEHAVKGMLP-KNRLGRKLFKKLKVYAGSEHPHEAQKPIVL  138 (140)
T ss_pred             cccccHHHhhhcCHHHHHHHHHHhcCC-CCccHHHHHhCeEEeCCCCCChhhcCCeec
Confidence            466888999999999999999999999 799999999999999999999999875543

This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.

>PRK09216 rplM 50S ribosomal protein L13; Reviewed

Probab=99.40  E-value=2.2e-13  Score=110.51  Aligned_cols=56  Identities=25%  Similarity=0.226  Sum_probs=51.1

Q ss_pred             ccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecc
Q psy9436          43 KIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP   99 (188)
Q Consensus        43 ~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP   99 (188)
                      .+++++++++.|++||+++||||||+ +.+|+.+|+||+||+|.|.||+.++-..++
T Consensus        86 ~~~~~~~~~r~P~~il~~aVrgMLPk-n~lgr~~~~rLkvy~G~~hp~~~q~p~~~~  141 (144)
T PRK09216         86 EITFGELLAKKPERVIEKAVKGMLPK-NPLGRAMFKKLKVYAGAEHPHAAQQPEVLE  141 (144)
T ss_pred             EecHHHHhhhCHHHHHHHHHHhcCCC-CccHHHHHhCcEEeCCCCCCccccCCEecc
Confidence            46899999999999999999999995 999999999999999999999998765543

>PLN00205 ribisomal protein L13 family protein; Provisional

Probab=99.37  E-value=3.2e-13  Score=114.21  Aligned_cols=59  Identities=14%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             ccCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecc
Q psy9436          40 HESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP   99 (188)
Q Consensus        40 ~~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP   99 (188)
                      +.+.+++.+++++.|+.||+++|+||||+++.+|+ +++||+||+|.|.||+.++.+++.
T Consensus        85 glk~~~~~~~~~r~P~~Il~kAVrGMLPkn~lr~~-~~krLkVY~G~~hp~~~q~p~~~~  143 (191)
T PLN00205         85 HLKERSLKDQMAKDPTEVIRKAVLRMLPRNRLRDD-RDRKLRIFAGSEHPFGDKPLEPFV  143 (191)
T ss_pred             CcccccHHHHhccCHHHHHHHHHHhcCCCCchHHH-HHhCCEEECCCCCChhccCCeEec
Confidence            35678899999999999999999999999877776 789999999999999998775543

>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=2.2e-13  Score=111.37  Aligned_cols=57  Identities=32%  Similarity=0.288  Sum_probs=49.4

Q ss_pred             cchHHHH-hhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhh
Q psy9436          44 IRAVEKL-ELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV  105 (188)
Q Consensus        44 ~~~~~~l-~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~  105 (188)
                      .++++.+ +++|++||+++||||||+ +++|++||+||+||.|+|+|+..    .+|+++.+.
T Consensus        87 ~t~~~~~~~r~P~ri~~~AVrGMLPk-~~lGr~~~krLkVy~G~~h~~~a----q~p~~l~~~  144 (148)
T COG0102          87 PTRGGPLAPRRPERILERAVRGMLPK-NPLGRAALKRLKVYAGIPHPHEA----QKPEALELK  144 (148)
T ss_pred             cccccccccCCHHHHHHHHHhccCCC-ChhHHHHHhCceEecCCCCcccc----ccchhhhhh
Confidence            4676777 599999999999999998 99999999999999999999554    568777554

>CHL00159 rpl13 ribosomal protein L13; Validated

Probab=99.35  E-value=7e-13  Score=107.63  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      .++.++++++|++||+++|+|||| |+.+|+.+++||+||+|.|.||..++-.++
T Consensus        88 ~~~~~~~~r~P~~il~~aV~gMLP-kn~lgr~~~~rLkvy~G~~hph~aq~p~~~  141 (143)
T CHL00159         88 ETFEELQNRLPNRIIEKAVKGMLP-KGPLGRKLFTKLKVYKGESHPHVAQKPIKI  141 (143)
T ss_pred             ccHHHHhhcCHHHHHHHHHHhcCC-CChhHHHHHhCCEEeCCCCCCccccCCeec
Confidence            477899999999999999999999 699999999999999999999999875544

>cd00392 Ribosomal_L13 Ribosomal protein L13

Probab=99.09  E-value=3.8e-11  Score=93.85  Aligned_cols=46  Identities=33%  Similarity=0.270  Sum_probs=42.3

Q ss_pred             ccCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCC
Q psy9436          40 HESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGI   86 (188)
Q Consensus        40 ~~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~Gi   86 (188)
                      .-...++++++++.|+.||+++|+|||| |+.+|+++|+||+||+|.
T Consensus        69 ~~~~~~~~~~~~~~P~~il~~aV~gMLP-kn~~g~~~l~rLkvy~g~  114 (114)
T cd00392          69 GLKNPTAGPLHPRAPERILKRAVRGMLP-KNKLGRAALKRLKVYEGA  114 (114)
T ss_pred             CCccCCcchhhhhCHHHHHHHHHHhcCC-CChhHHHHHhCcEEeCCC
Confidence            3466788999999999999999999999 899999999999999994

Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.

>KOG3203|consensus

Probab=97.63  E-value=4.7e-05  Score=63.60  Aligned_cols=47  Identities=17%  Similarity=0.156  Sum_probs=41.0

Q ss_pred             cchHHHH-hhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcc
Q psy9436          44 IRAVEKL-ELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYA   91 (188)
Q Consensus        44 ~~~~~~l-~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd   91 (188)
                      .++.+.+ ++-|.+|++++|.|||| |+..++.-++||++|.|--.||+
T Consensus        94 ~~~~~q~~~rdp~~Iv~~AV~gMLP-kN~Lrr~~~~rL~lf~g~e~p~~  141 (165)
T KOG3203|consen   94 QTTADQLADRDPCRIVRLAVYGMLP-KNLLRRRRMQRLHLFPGEEHPEK  141 (165)
T ss_pred             hhHHHHHhhhCHHHHHHHHHHhhCc-cchHHHHHhheeeccCCccCchh
Confidence            4556666 79999999999999999 57888999999999999887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
2zkr_j	203	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-18
3izs_K	199	Localization Of The Large Subunit Ribosomal Protein		4e-18
3izr_K	206	Localization Of The Large Subunit Ribosomal Protein		2e-17
4b6a_O	217	Cryo-Em Structure Of The 60s Ribosomal Subunit In C		1e-16
3u5i_O	217	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-16
3jyw_M	178	Structure Of The 60s Proteins For Eukaryotic Riboso		5e-16
1s1i_M	146	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-15
4a17_I	198	T.Thermophila 60s Ribosomal Subunit In Complex With		6e-11
3zf7_O	222	High-resolution Cryo-electron Microscopy Structure		1e-07
1j3a_A	142	Crystal Structure Of Ribosomal Protein L13 From Pyr		1e-05
3j21_I	142	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-05

>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 203

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 49/67 (73%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL RLKV++GIPP Y +++R+ VP AL+ V LKP R +  +GR++HEV
Sbjct: 86  GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTI 130
           GWKY+ +
Sbjct: 146 GWKYQAV 152

>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 199

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M  HK  RG  AL+RLKV+EGIPP Y +++R+ VP ALR + LKPGR Y ++G++S  V
Sbjct: 86  GMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSV 145
Query: 124 GWKYKTIVRHL 134
           GWKY+ +V  L
Sbjct: 146 GWKYEDVVAKL 156

>pdb|3IZR|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 206

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  RG  AL RLK YEG+PP Y R +R+ +P AL+ + L+PG  YC +G++S EV
Sbjct: 91  GMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEV 150
Query: 124 GWKYKTIVRHL 134
           GW Y   +R L
Sbjct: 151 GWNYADTIREL 161

>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M  HK  RG  AL+RLKV+EGIPP Y +++R+ VP ALR + LKPGR Y ++G++S  V
Sbjct: 80  GMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSV 139
Query: 124 GWK 126
           GWK
Sbjct: 140 GWK 142

>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 146

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M  HK  RG  AL+RLKV+EGIPP Y +++R+ VP ALR + LKPGR Y ++G++S  V
Sbjct: 85  GMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSV 144
Query: 124 GW 125
           GW
Sbjct: 145 GW 146

>pdb|4A17|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 198

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
            M PHK  +GA AL+RLK++EGIP  Y R ++  V  AL+   L+  R  C +G +S  V
Sbjct: 85  GMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASV 144
Query: 124 GWKYKTIVRHL 134
           GW  +T++  L
Sbjct: 145 GWGKQTLIEKL 155

>pdb|3ZF7|O Chain O, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 222

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 64  SMTPHKLDRGAKALKRLKVYEGIPPKYARRQ-RLCVPTALRTVCLKPGRSYCSVGRISHE 122
           SM P    RG +AL++L  YEG+P    R   R+ +P A R  C +  R +  +G +   
Sbjct: 104 SMLPRYTKRGQRALRQLVAYEGVPVNVVRTGGRVVIPKAQRHNCYRNERRFTVLGNMCKH 163
Query: 123 VGWKYKTIVRHL 134
           VGWKY  +V  L
Sbjct: 164 VGWKYSDVVEKL 175

>pdb|1J3A|A Chain A, Crystal Structure Of Ribosomal Protein L13 From Pyrococcus Horikoshii Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 54  SIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSY 113
           S E  R     M P K DRG KA +RLKVY GIP ++  +Q   +  A  +   +P   Y
Sbjct: 71  SDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRP--KY 128
Query: 114 CSVGRISHEVGWKY 127
            +VG ++  +G K+
Sbjct: 129 VTVGEVAKFLGGKF 142

>pdb|3J21|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 142

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 54  SIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSY 113
           S E  R     M P K DRG KA KRLKVY GIP ++  ++   +  A  +   +P   Y
Sbjct: 71  SDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEAHVSRLSRP--KY 128
Query: 114 CSVGRISHEVGWKY 127
            +VG ++  +G K+
Sbjct: 129 VTVGEVAKFLGGKF 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	2e-22
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	3e-21
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	4e-21
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	1e-20
2zkr_j	203	60S ribosomal protein L13A; protein-RNA complex, 6	1e-20
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	4e-20
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	3e-15

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178

 Score = 87.9 bits (218), Expect = 2e-22
 Identities = 35/78 (44%), Positives = 47/78 (60%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M  HK  RG  AL+RLKV+EGIPP Y +++R+ VP ALR + LKPGR Y ++G++S  VG
Sbjct: 81  MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVG 140

Query: 125 WKYKTIVRHLERKRREKS 142
           WK               +
Sbjct: 141 WKAAAAAAAAAAAAAAAA 158

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Length = 198

 Score = 85.4 bits (211), Expect = 3e-21
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M PHK  +GA AL+RLK++EGIP  Y R ++  V  AL+   L+  R  C +G +S  VG
Sbjct: 86  MLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVG 145

Query: 125 WKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINT 184
           W  +T++  LE KRR ++                       +  +    A   +  ++  
Sbjct: 146 WGKQTLIEKLEEKRRARAKTYHD----------KKVKQADARKKELAAPALKAIKDKLAQ 195

Query: 185 FGY 187
           FGY
Sbjct: 196 FGY 198

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 203

 Score = 83.9 bits (207), Expect = 1e-20
 Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 8/123 (6%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M PHK  RG  AL RLKV++GIPP Y +++R+ VP AL+ V LKP R +  +GR++HEVG
Sbjct: 87  MLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVG 146

Query: 125 WKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINT 184
           WKY+ +   LE KR+EK+    +     +         L K+A K V+K     T+ + T
Sbjct: 147 WKYQAVTATLEEKRKEKAKIHYRKKKQLM--------RLRKQAEKNVEKKIDKYTEVLKT 198

Query: 185 FGY 187
            G 
Sbjct: 199 HGL 201

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Length = 142

 Score = 81.1 bits (201), Expect = 4e-20
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M P K DRG KA +RLKVY GIP ++  +Q   +  A  +        Y +VG ++  +G
Sbjct: 82  MLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVS--RLSRPKYVTVGEVAKFLG 139

Query: 125 WKY 127
            K+
Sbjct: 140 GKF 142

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Length = 145

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M PHK  RG +A + ++VY G P            T+L  +       + ++G IS  +G
Sbjct: 86  MLPHKKQRGREAFESVRVYLGNPYDEDGEV--LDGTSLDRL---SNIKFVTLGEISETLG 140

Query: 125 WKY 127
              
Sbjct: 141 ANK 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	100.0
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	100.0
4b6a_O	199	60S ribosomal protein L16-A; large ribosomal subun	100.0
2zkr_j	203	60S ribosomal protein L13A; protein-RNA complex, 6	100.0
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	99.97
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	99.96
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	99.94
3bbo_L	250	Ribosomal protein L13; large ribosomal subunit, sp	99.54
3r8s_J	142	50S ribosomal protein L13; protein biosynthesis, R	99.51
3v2d_N	140	50S ribosomal protein L13; ribosome associated inh	99.51
3f1f_N	163	50S ribosomal protein L13; RF2, ribosome, terminat	99.48
2zjr_G	174	50S ribosomal protein L13; ribosome, large ribosom	99.45
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	99.45

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I

Probab=100.00  E-value=3.8e-47  Score=318.77  Aligned_cols=132  Identities=30%  Similarity=0.471  Sum_probs=127.9

Q ss_pred             hHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhcc
Q psy9436          46 AVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGW  125 (188)
Q Consensus        46 ~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evGW  125 (188)
                      .+++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.+++|+||+|+++.+|+|+||||+||+||++|||
T Consensus        67 ~g~~~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gw  146 (198)
T 4a17_I           67 RGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGW  146 (198)
T ss_dssp             SSCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTC
T ss_pred             cccccccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCc
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhcCC
Q psy9436         126 KYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGY  187 (188)
Q Consensus       126 Ky~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~Gy  187 (188)
                      +|++||++||++||+++++||++|++        ..+++++|+++++++  +++++|++|||
T Consensus       147 k~~~vv~~le~krk~k~~~~y~~k~~--------~~~~~~~a~~~~~~~--~~~~~l~~~g~  198 (198)
T 4a17_I          147 GKQTLIEKLEEKRRARAKTYHDKKVK--------QADARKKELAAPALK--AIKDKLAQFGY  198 (198)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHTTSSHHHH--HHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhh--hHHHHHHHcCC
Confidence            99999999999999999999999999        999999999998875  59999999998

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.4e-47  Score=321.01  Aligned_cols=150  Identities=35%  Similarity=0.528  Sum_probs=80.4

Q ss_pred             hhHHhHhhhccCcc-----chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhh
Q psy9436          31 FDRKRKQARHESKI-----RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV  105 (188)
Q Consensus        31 ~~~~~~~~~~~~~~-----~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~  105 (188)
                      ++++..-.+|.+++     +++++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.++.++||+|+++.
T Consensus        48 ~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~  127 (203)
T 2zkr_j           48 YRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVV  127 (203)
T ss_dssp             HHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSS
T ss_pred             HHHHHHHHHHHhhcccCCCCCCccccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhh
Confidence            44555543565333     6677889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeeehhhhHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhc
Q psy9436         106 CLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTF  185 (188)
Q Consensus       106 rlkp~rKy~tLGeLs~evGWKy~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~  185 (188)
                      +++|+++||+|||||++|||||++||++||++||+++++||++|++        +.+++++|++++++++++++++|++|
T Consensus       128 ~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk~k~~~~y~~kk~--------~~~~~~~a~~~~~~~~~~~~~~l~~~  199 (203)
T 2zkr_j          128 RLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQ--------LMRLRKQAEKNVEKKIDKYTEVLKTH  199 (203)
T ss_dssp             SSSCCSCEEEHHHHC-----------------------------------------------------------------
T ss_pred             hcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999        89999999999999999999999999


Q ss_pred             CCC
Q psy9436         186 GYK  188 (188)
Q Consensus       186 Gy~  188 (188)
                      ||+
T Consensus       200 g~~  202 (203)
T 2zkr_j          200 GLL  202 (203)
T ss_dssp             ---
T ss_pred             CCC
Confidence            994

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.97  E-value=8e-33  Score=228.70  Aligned_cols=91  Identities=38%  Similarity=0.616  Sum_probs=87.1

Q ss_pred             hHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhcc
Q psy9436          46 AVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGW  125 (188)
Q Consensus        46 ~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evGW  125 (188)
                      .+++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.+++++||+|+++.+++|+++||+||+||+++||
T Consensus        62 ~~~~~~r~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGw  141 (178)
T 3jyw_M           62 RGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW  141 (178)
T ss_dssp             SSCCCCSSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTC
T ss_pred             ccccccCCHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCC
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHH
Q psy9436         126 KYKTIVRHLER  136 (188)
Q Consensus       126 Ky~~vv~~LE~  136 (188)
                      ||++||+.--+
T Consensus       142 k~~~~~~~~~~  152 (178)
T 3jyw_M          142 KAAAAAAAAAA  152 (178)
T ss_dssp             CCHHHHHTHHH
T ss_pred             cchhhHHHHHH
Confidence            99999986543

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1

Probab=99.96  E-value=7.3e-30  Score=204.29  Aligned_cols=84  Identities=33%  Similarity=0.426  Sum_probs=73.3

Q ss_pred             cCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhH
Q psy9436          41 ESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRIS  120 (188)
Q Consensus        41 ~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs  120 (188)
                      .++.+ +++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.++.+++|.|+. .++ +++|||+|||||
T Consensus        59 ~~~~~-~~~~~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~-~~~k~~~lg~ls  135 (142)
T 1j3a_A           59 TNPRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRL-SRPKYVTVGEVA  135 (142)
T ss_dssp             ---------CCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGS-SSCCEEEHHHHH
T ss_pred             cCCcc-CcccccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hcc-CCCCeEEHHHHH
Confidence            44566 889999999999999999999999999999999999999999999999999999996 676 599999999999


Q ss_pred             HHhccch
Q psy9436         121 HEVGWKY  127 (188)
Q Consensus       121 ~evGWKy  127 (188)
                      ++|||||
T Consensus       136 ~~~Gwk~  142 (142)
T 1j3a_A          136 KFLGGKF  142 (142)
T ss_dssp             HHHTCCC
T ss_pred             HHhCCCC
Confidence            9999997

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...

Probab=99.94  E-value=5.5e-28  Score=194.34  Aligned_cols=78  Identities=21%  Similarity=0.221  Sum_probs=74.1

Q ss_pred             chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhc
Q psy9436          45 RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG  124 (188)
Q Consensus        45 ~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evG  124 (188)
                      +++++++++|++||+++||||||||+++|+++|+||+||+|+|+|   +++++||.|+. .++ +++|||+|||||++||
T Consensus        66 ~~~~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l-~~~k~~~lg~ls~~~G  140 (145)
T 1vq8_J           66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRL-SNIKFVTLGEISETLG  140 (145)
T ss_dssp             SSCCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTT-SCCSEEEHHHHHHHHT
T ss_pred             CHHHHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hcc-CCCCeEEHHHHHHHhC
Confidence            888899999999999999999999999999999999999999999   78999999985 666 4999999999999999


Q ss_pred             cch
Q psy9436         125 WKY  127 (188)
Q Consensus       125 WKy  127 (188)
                      |||
T Consensus       141 wk~  143 (145)
T 1vq8_J          141 ANK  143 (145)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            998

>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.54  E-value=1.9e-15  Score=130.76  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhcc
Q psy9436          44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCL  107 (188)
Q Consensus        44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rl  107 (188)
                      .+++++++++|++|||++||||||+ +.+|+++|+||+||+|.|+||+.++.+++|-|+++++|
T Consensus       186 ~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~  248 (250)
T 3bbo_L          186 ETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV  248 (250)
T ss_dssp             CCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred             ccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence            4689999999999999999999996 88999999999999999999999999999999988775

>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...

Probab=99.51  E-value=6.1e-15  Score=118.32  Aligned_cols=54  Identities=22%  Similarity=0.192  Sum_probs=50.2

Q ss_pred             cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      .+++++++++|++|||++|||||| |+++|+++|+||+||+|.|+||+.++..++
T Consensus        87 ~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkVy~G~~hph~aq~p~~l  140 (142)
T 3r8s_J           87 ATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQPQVL  140 (142)
T ss_dssp             CBHHHHHHHCSHHHHHHHHHHHSC-SSHHHHHHHTTEEECSSSCCSCGGGCCEEC
T ss_pred             cCHHHHHhhCHHHHHHHHHHhcCC-CChhHHHHHhCCEEECCCCCCcccCCCeec
Confidence            488999999999999999999999 799999999999999999999999886654

>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...

Probab=99.51  E-value=6.6e-15  Score=117.90  Aligned_cols=56  Identities=23%  Similarity=0.234  Sum_probs=51.3

Q ss_pred             CccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          42 SKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        42 ~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      ..++++++++++|++|||++||||||+ +++|+++|+||+||+|.|.||+.++-.++
T Consensus        83 k~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~p~~~  138 (140)
T 3v2d_N           83 KKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEKL  138 (140)
T ss_dssp             EEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGCCEEE
T ss_pred             eeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCCCeec
Confidence            456899999999999999999999996 89999999999999999999999876543

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N

Probab=99.48  E-value=2.1e-14  Score=117.68  Aligned_cols=57  Identities=23%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             cCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          41 ESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        41 ~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      -..++++++++++|++|||++||||||+ +.+|+++|+||+||+|.|+||+.++-.++
T Consensus       105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~P~~l  161 (163)
T 3f1f_N          105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEKL  161 (163)
T ss_dssp             BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCCCBCC
T ss_pred             ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCCCeec
Confidence            3567899999999999999999999996 79999999999999999999999875543

>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K

Probab=99.45  E-value=1.8e-14  Score=119.03  Aligned_cols=56  Identities=21%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             ccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecc
Q psy9436          43 KIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP   99 (188)
Q Consensus        43 ~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP   99 (188)
                      .++++++++++|++|||++||||||+ +++|+++|+||+||+|.|+||+.++.++++
T Consensus       112 ~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l~  167 (174)
T 2zjr_G          112 TETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVLK  167 (174)
T ss_dssp             EEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCCC
T ss_pred             cccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEEe
Confidence            46888999999999999999999995 999999999999999999999999988776

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=99.45  E-value=3.4e-14  Score=114.58  Aligned_cols=54  Identities=11%  Similarity=0.023  Sum_probs=49.4

Q ss_pred             cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      .+++++++++|++|||++||||||++ .+|+++|+||+||+|.|.|++.++.+++
T Consensus        90 ~~~~~~~~r~P~~ii~~aVrGMLPkn-~lgr~~l~rLkVy~G~~hP~~aq~p~~~  143 (148)
T 2ftc_H           90 VTAAQLHLRDPVAIVKLAIYGMLPKN-LHRRTMMERLHLFPDEYIPEDILKNLVE  143 (148)
T ss_pred             ccHHHHhhcCHHHHHHHHHHhcCCCC-chHHHHHhCcEEeCCCCCChHHhCCeee
Confidence            47899999999999999999999975 9999999999999999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1j3aa_	142	c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyro	1e-15
d1vqoj1	142	c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon	2e-10

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 68.1 bits (166), Expect = 1e-15
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 20  KTTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKR 79
             T  +  I    ++R   R  +  R        S E  R     M P K DRG KA +R
Sbjct: 37  VITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRR 96

Query: 80  LKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKY 127
           LKVY GIP ++  +Q   +  A  +   +P   Y +VG ++  +G K+
Sbjct: 97  LKVYVGIPKEFQDKQLETIVEAHVSRLSRP--KYVTVGEVAKFLGGKF 142

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 65  MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
           M PHK  RG +A + ++VY G P  Y     +   T+L  +       + ++G IS  +G
Sbjct: 83  MLPHKKQRGREAFESVRVYLGNP--YDEDGEVLDGTSLDRL---SNIKFVTLGEISETLG 137

Query: 125 WK 126
             
Sbjct: 138 AN 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1j3aa_	142	Ribosomal protein L13 {Archaeon Pyrococcus horikos	99.92
d1vqoj1	142	Ribosomal protein L13 {Archaeon Haloarcula marismo	99.89
d2j01n1	139	Ribosomal protein L13 {Thermus thermophilus [TaxId	99.42
d2zjrg1	142	Ribosomal protein L13 {Deinococcus radiodurans [Ta	99.38
d2gych1	140	Ribosomal protein L13 {Escherichia coli [TaxId: 56	99.32

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=1.2e-26  Score=183.68  Aligned_cols=81  Identities=35%  Similarity=0.456  Sum_probs=70.6

Q ss_pred             chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhc
Q psy9436          45 RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG  124 (188)
Q Consensus        45 ~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evG  124 (188)
                      +++++++++|++||+++||||||||+++|+++|+||+||+|+|.||+.++..++|+|. +.++. .++||+|||||.+||
T Consensus        62 ~~~~~~~~~P~~il~~aVrGMLP~k~~lgr~~~krLkvy~G~~h~~~~q~~~~~~~a~-~~~~~-~~k~~~lgels~~~G  139 (142)
T d1j3aa_          62 RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAH-VSRLS-RPKYVTVGEVAKFLG  139 (142)
T ss_dssp             -----CCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGB-GGGSS-SCCEEEHHHHHHHHT
T ss_pred             chhhhcccChHHHHHHHHHcccCCCChHHHHHHhCCEEecCCCCChhhcCCccccHHH-Hhhhc-CCceEEHHHHHHHhC
Confidence            5788999999999999999999999999999999999999999999999999999996 44443 249999999999999


Q ss_pred             cch
Q psy9436         125 WKY  127 (188)
Q Consensus       125 WKy  127 (188)
                      |||
T Consensus       140 wk~  142 (142)
T d1j3aa_         140 GKF  142 (142)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            997

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.89  E-value=3.9e-24  Score=169.57  Aligned_cols=76  Identities=22%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             HHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhccc
Q psy9436          47 VEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWK  126 (188)
Q Consensus        47 ~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evGWK  126 (188)
                      ++++++.|++||+|+||||||||+.+|++||+||+||+|+|.|+..+  .++|.++...   +.+|||+|||||++|||+
T Consensus        65 g~~~~r~P~~il~raVrGMLP~k~~~gr~~~krLkvy~G~~h~~~~q--~~~~~~~~~~---~~~k~v~lgels~~lGw~  139 (142)
T d1vqoj1          65 GYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGE--VLDGTSLDRL---SNIKFVTLGEISETLGAN  139 (142)
T ss_dssp             CCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCSSSCCB--CCTTCBCCTT---TCCSEEEHHHHHHHHTCC
T ss_pred             ceehhcCHHHHHHHHHhCcCCCCChhHHHHHhCcEEeCCCCCccccC--cCChhhhhcc---CCCceEEHHHHHHHhCCC
Confidence            45789999999999999999999999999999999999999999865  4677777443   468999999999999998


Q ss_pred             h
Q psy9436         127 Y  127 (188)
Q Consensus       127 y  127 (188)
                      .
T Consensus       140 ~  140 (142)
T d1vqoj1         140 K  140 (142)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=4.7e-14  Score=110.48  Aligned_cols=58  Identities=24%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             ccCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436          40 HESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV   98 (188)
Q Consensus        40 ~~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV   98 (188)
                      .....++.+++++.|++||++||+|||| |+.+|+++|+||+||.|.|.||+.++..++
T Consensus        81 g~k~~~~~~~~~k~P~~il~~aV~gMLP-kn~lg~~~l~rLkvy~g~~hp~~aq~p~~l  138 (139)
T d2j01n1          81 GLKKIPLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPHQAQRPEKL  138 (139)
T ss_dssp             CCCCCBHHHHHHSSCSHHHHHHHHTTSC-SSHHHHHHHTTCEECSSSCCTTCSCCCCCC
T ss_pred             ccccccHHHhcccCHHHHHHHHHHhcCC-CChhHHHHHhCCEEeCCCCCCcccCCCEeC
Confidence            3455688999999999999999999999 789999999999999999999999886554

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.38  E-value=5.2e-14  Score=110.65  Aligned_cols=52  Identities=25%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCccccc
Q psy9436          42 SKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQ   94 (188)
Q Consensus        42 ~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kK   94 (188)
                      ...++++++++.|++||++||+|||| |+.+|+++|+||+||+|.+.||+.++
T Consensus        82 k~~~~~~~~~r~P~~ii~~aV~gMLP-kn~lgr~~lkrLkvy~G~~hp~~~q~  133 (142)
T d2zjrg1          82 KTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSAQK  133 (142)
T ss_dssp             CEEEESTTTTSCHHHHHHHHHGGGSC-CSHHHHHHHTTCEECSCSTGGGGSCC
T ss_pred             ccccHHHHhccchHHHHHHHHHhcCC-CChhHHHHHhCCeEeCCCCCCccccC
Confidence            45677889999999999999999999 78999999999999999999999987

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=5.9e-14  Score=110.17  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=50.8

Q ss_pred             cCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCccccccee
Q psy9436          41 ESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLC   97 (188)
Q Consensus        41 ~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~v   97 (188)
                      -...++++++++.|++||+++|+|||| |+..|+.+|+||+||+|.|.||+.|+..+
T Consensus        84 ~k~~~~~~~~~k~P~~il~~aV~gMLP-kn~lgr~~lkrLkvy~g~~hph~aQ~P~~  139 (140)
T d2gych1          84 IKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQPQV  139 (140)
T ss_dssp             CCCCCCHHHHTTCSSSSTTTSSSSCSC-SSSTTSSTTTSSCCCCCCTTTTTSCCCCC
T ss_pred             cccccHHHHHhhHHHHHHHHHHHhcCC-CChhHHHHHhCCEEeCCCCCCccccCCcc
Confidence            345679999999999999999999999 78999999999999999999999987543