Psyllid ID: psy946

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710----
MDYFFFSRDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTVGKEGRAFVKTWVRERGKDVRFVYKGLRSKLKEDKHGEAKSHSAPSSPTQLRKKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPATRRATNQAN
ccccEEcccccccEEEEEEEEEcccccccccEEEccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEcccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHccccccHHHHHHHHHHcccEEccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccHHHHHHHccccccEEEEEcccccEEccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEcccccHHcHHHHHHHHcccccccHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccc
cccEEEEcccHHHHEEEEEEEccccccccccHHHccccccccHHHHHHccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEcccccEEEEcccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHccccccEccccHHHHHHccccccccEEEEEccccEEcccccccccccccccHEEEEEEccHHHHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHcccccEEHHccHcHHHHHHHccHccEEEEEEccccEccccccHHcccHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHcHHHHEEccccccEEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccc
mdyfffsrDNVKHLFECFCevarpqgkepawvlqkfpgsykdesvlknvpkfaypcklentsVEYYSFVLTdldskftfgycrhdpksdtsMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATsknteytcqapnqyqlpsipenknlteycaiepvnMLHIFASMLYERRIVITSKRLSRVSACVQAANsviypmcwqhifiplmprdlldyltapmpymvglpeilldsvrrnelgDVVLlnadtnvlttphddlntlpqdvknlteycaiepvnMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYpmcwqhifiplmprdlldyltapmpymvglpeilldsvrrnelgDVVLlnadtnvlttphddlntlpQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDAlkfhqgqeitfndaafvesrpaaMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACnymdkssgtVKQQYKEWLRTdkeskngqefrvkyfspvfQFKEERLNMLNSGQGFTDEFEREACnymdkssgtVKQQYKEWLRTVGKEGRAFVKTWVRERGKDVRFVYKGLRSKlkedkhgeakshsapssptqlrkkdisiplqsnkysplespdlspplninmDLMSDLQHvifkdcsptSVQKTMLqaipslpppavpatrratnqan
mdyfffsrdnVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNadtnvlttphddlntlpQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNAdtnvlttphddlntlpQDVIATLKKQLrnkttgdgvaRAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYmdkssgtvkQQYKEWLRTdkeskngqefrVKYFSPVFQFKEERLNMLNSGQGFTDEFEREACNYMdkssgtvkqQYKEWLRtvgkegrafvktwvrergkdvrfvYKGLRsklkedkhgeakshsapssptqlrkKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQaipslpppavpatRRATNQAN
MDYFFFSRDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTVGKEGRAFVKTWVRERGKDVRFVYKGLRSKLKEDKHGEAKSHSAPSSPTQLRKKDISIPLQSNKYsplespdlspplNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLpppavpatrratNQAN
**YFFFSRDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNY*************EWL**********EFRVKYFSPVFQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTVGKEGRAFVKTWVRERGKDVRFVYKGL******************************************************DLMSDLQHVIFKDC********************************
*DYFF**RDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYN**************KNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFER**********************************************************************************************************************************************************************************************************************
MDYFFFSRDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTVGKEGRAFVKTWVRERGKDVRFVYKGLRSKLK********************KKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAV***********
MDYFFFSRDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEERLNMLNSG*******************************************************************************************************DLSPPLNINMDLMSDLQHVIFKDCSPTSV*******IPSLPPPA************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDYFFFSRDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTVGKEGRAFVKTWVRERGKDVRFVYKGLRSKLKEDKHGEAKSHSAPSSPTQLRKKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPATRRATNQAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query714 2.2.26 [Sep-21-2011]
Q68F67 1010 DENN domain-containing pr N/A N/A 0.376 0.266 0.445 8e-64
Q8K382 1016 DENN domain-containing pr no N/A 0.348 0.245 0.482 4e-63
Q8TEH3 1009 DENN domain-containing pr no N/A 0.348 0.246 0.482 2e-62
Q6P3S1426 DENN domain-containing pr no N/A 0.310 0.521 0.508 5e-62
Q3U1T9425 DENN domain-containing pr no N/A 0.310 0.522 0.504 1e-61
Q8CFK6 786 DENN domain-containing pr no N/A 0.350 0.318 0.437 8e-57
Q8IV53 801 DENN domain-containing pr no N/A 0.345 0.308 0.425 1e-52
P785241137 Suppression of tumorigeni no N/A 0.354 0.222 0.285 8e-24
Q924W71134 Suppression of tumorigeni no N/A 0.329 0.207 0.284 1e-23
Q9H6A0471 DENN domain-containing pr no N/A 0.341 0.518 0.286 3e-22
>sp|Q68F67|DEN1A_XENLA DENN domain-containing protein 1A OS=Xenopus laevis GN=dennd1a PE=2 SV=1 Back     alignment and function desciption
 Score =  245 bits (626), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 123/276 (44%), Positives = 183/276 (66%), Gaps = 7/276 (2%)

Query: 258 ELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEY-CAIEPVNMLHIFASMLYERRIVIT 316
           E G  + L+  ++       +L ++P++ +NLTEY  A++  NMLH++ASMLYERRI+I 
Sbjct: 140 EPGTPMHLSVHSHFTVPDSQELPSIPEN-RNLTEYFVAVDVNNMLHLYASMLYERRILIC 198

Query: 317 SKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRN 376
             +LS ++AC+  ++ +++PM WQH++IP++P  LLDY  APMPY++G+   L++ V+  
Sbjct: 199 CSKLSTLTACIHGSSAMLFPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHSSLMEKVKGM 258

Query: 377 ELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLR--NKTTGDGVARAFLRALVQLI 434
            L DVV LN DTN L TP DDL  LP +V++ LK ++R  + TTGDGVARAFL+A   L 
Sbjct: 259 SLDDVVFLNVDTNTLETPFDDLQNLPNEVVSALKNRIRKMSTTTGDGVARAFLKAQASLF 318

Query: 435 GGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGF 494
           G YR+ALK    + ITF +  FV  R + ++PFL+  + LQ+F+QF + RL++LNSG GF
Sbjct: 319 GSYRNALKIEPEEPITFCEETFVSHRSSGLRPFLQNAIQLQLFKQFIDGRLDLLNSGNGF 378

Query: 495 TDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNG 530
           +D FE E    M + +G+ K  Y +WL T K+    
Sbjct: 379 SDVFEEEI--NMGEYAGSDK-LYHQWLSTVKKGSGA 411
Guanine nucleotide exchange factor (GEF) for RAB35 (By similarity). May be involved in the clathrin-mediated endocytosis of synaptic vesicles.
Xenopus laevis (taxid: 8355)
>sp|Q8K382|DEN1A_MOUSE DENN domain-containing protein 1A OS=Mus musculus GN=Dennd1a PE=1 SV=2 Back     alignment and function description
>sp|Q8TEH3|DEN1A_HUMAN DENN domain-containing protein 1A OS=Homo sapiens GN=DENND1A PE=1 SV=2 Back     alignment and function description
>sp|Q6P3S1|DEN1B_HUMAN DENN domain-containing protein 1B OS=Homo sapiens GN=DENND1B PE=1 SV=1 Back     alignment and function description
>sp|Q3U1T9|DEN1B_MOUSE DENN domain-containing protein 1B OS=Mus musculus GN=Dennd1b PE=2 SV=2 Back     alignment and function description
>sp|Q8CFK6|DEN1C_MOUSE DENN domain-containing protein 1C OS=Mus musculus GN=Dennd1c PE=2 SV=1 Back     alignment and function description
>sp|Q8IV53|DEN1C_HUMAN DENN domain-containing protein 1C OS=Homo sapiens GN=DENND1C PE=1 SV=1 Back     alignment and function description
>sp|P78524|ST5_HUMAN Suppression of tumorigenicity 5 protein OS=Homo sapiens GN=ST5 PE=1 SV=3 Back     alignment and function description
>sp|Q924W7|ST5_MOUSE Suppression of tumorigenicity 5 protein OS=Mus musculus GN=St5 PE=2 SV=1 Back     alignment and function description
>sp|Q9H6A0|DEN2D_HUMAN DENN domain-containing protein 2D OS=Homo sapiens GN=DENND2D PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query714
307203963 933 DENN domain-containing protein 1A [Harpe 0.390 0.299 0.588 1e-101
340721365718 PREDICTED: DENN domain-containing protei 0.396 0.394 0.576 1e-100
350406674691 PREDICTED: DENN domain-containing protei 0.390 0.403 0.588 1e-100
350406670 909 PREDICTED: DENN domain-containing protei 0.390 0.306 0.588 1e-100
340721367 936 PREDICTED: DENN domain-containing protei 0.396 0.302 0.576 1e-100
380015817 911 PREDICTED: DENN domain-containing protei 0.390 0.306 0.585 1e-100
156538397 957 PREDICTED: DENN domain-containing protei 0.390 0.291 0.588 1e-100
345491477724 PREDICTED: DENN domain-containing protei 0.390 0.385 0.588 1e-100
66519275694 PREDICTED: DENN domain-containing protei 0.390 0.402 0.578 1e-100
328787160 910 PREDICTED: DENN domain-containing protei 0.390 0.306 0.578 1e-100
>gi|307203963|gb|EFN82870.1| DENN domain-containing protein 1A [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 166/282 (58%), Positives = 226/282 (80%), Gaps = 3/282 (1%)

Query: 8   RDNVKHLFECFCEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYS 67
           R+NVK LFECFCEVA P G++PAW+LQK+P S+ DE +LK+VPKFAYPC++EN  V+++S
Sbjct: 6   RENVKQLFECFCEVAAPVGEKPAWILQKYPNSFLDEEILKSVPKFAYPCEVENLLVQHFS 65

Query: 68  FVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFL 127
           FVLT +DSK+TFG+CRHDPK+DT++V++S LPWHE+FYKLLN +  +T+ +S + LW FL
Sbjct: 66  FVLTSIDSKWTFGFCRHDPKTDTALVVLSALPWHETFYKLLNHIASLTSNASGEDLWKFL 125

Query: 128 EDIYNANIPEYGQIIYATSKNT--EYTCQAPNQYQLPSIPENKNLTE-YCAIEPVNMLHI 184
           E++Y   +P  G  I     N+   + CQ+P Q+QLPSIPEN+NLTE Y A++  NM+ +
Sbjct: 126 ENLYTCGVPIPGNSISIPLPNSTVNFICQSPKQFQLPSIPENRNLTEYYSAVDSHNMMMV 185

Query: 185 FASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMV 244
           FASMLYERRI+ TSKRLSR+SACVQA N++IYPM WQHI+IP++P  L+DYL APMP+++
Sbjct: 186 FASMLYERRIIFTSKRLSRLSACVQACNALIYPMIWQHIYIPVLPLSLIDYLLAPMPFLI 245

Query: 245 GLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDV 286
           G+P   L  VR+++LG+VV+L+AD N + +P  DL +LPQDV
Sbjct: 246 GVPTGTLQKVRKSDLGEVVILDADNNTIESPFQDLESLPQDV 287

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340721365|ref|XP_003399092.1| PREDICTED: DENN domain-containing protein 1A-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350406674|ref|XP_003487845.1| PREDICTED: DENN domain-containing protein 1A-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350406670|ref|XP_003487844.1| PREDICTED: DENN domain-containing protein 1A-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340721367|ref|XP_003399093.1| PREDICTED: DENN domain-containing protein 1A-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380015817|ref|XP_003691891.1| PREDICTED: DENN domain-containing protein 1A-like [Apis florea] Back     alignment and taxonomy information
>gi|156538397|ref|XP_001605673.1| PREDICTED: DENN domain-containing protein 1C-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345491477|ref|XP_003426619.1| PREDICTED: DENN domain-containing protein 1C-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66519275|ref|XP_397549.2| PREDICTED: DENN domain-containing protein 1A-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|328787160|ref|XP_003250890.1| PREDICTED: DENN domain-containing protein 1A-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query714
MGI|MGI:2447812425 Dennd1b "DENN/MADD domain cont 0.310 0.522 0.504 9.5e-84
UNIPROTKB|Q6P3S1426 DENND1B "DENN domain-containin 0.310 0.521 0.508 4e-83
FB|FBgn0027561 908 CG18659 [Drosophila melanogast 0.389 0.306 0.457 1.9e-81
UNIPROTKB|F1SBS9 795 DENND1C "Uncharacterized prote 0.344 0.309 0.435 6.3e-73
UNIPROTKB|E1BFU9 798 DENND1C "Uncharacterized prote 0.362 0.324 0.431 4.7e-72
MGI|MGI:2442794 1016 Dennd1a "DENN/MADD domain cont 0.516 0.363 0.386 4.6e-71
UNIPROTKB|F1P3R1 1050 DENND1A "Uncharacterized prote 0.523 0.356 0.384 3.2e-70
UNIPROTKB|Q8TEH3 1009 DENND1A "DENN domain-containin 0.516 0.365 0.383 3.4e-70
MGI|MGI:1918035 786 Dennd1c "DENN/MADD domain cont 0.348 0.316 0.439 3.7e-70
UNIPROTKB|F1MME2 1006 DENND1A "Uncharacterized prote 0.516 0.366 0.383 4.3e-70
MGI|MGI:2447812 Dennd1b "DENN/MADD domain containing 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 596 (214.9 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
 Identities = 114/226 (50%), Positives = 166/226 (73%)

Query:   279 LNTLPQDVKNLTEY-CAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPM 337
             L T+P+  +NLTEY  A++  NML ++ASML+ERRI+ITS +LS ++AC+  +  ++YPM
Sbjct:   181 LPTIPES-RNLTEYFVAVDVNNMLRLYASMLHERRIIITSSKLSTLTACLHGSAALLYPM 239

Query:   338 CWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDD 397
              WQHI+IP++P  LLDY  APMPY++G+   L++ V+   L DVV+LN DTN L +P +D
Sbjct:   240 YWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVVLNVDTNTLESPFND 299

Query:   398 LNTLPQDVIATLKKQLRNKTT--GDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAA 455
             L++LP DV++ LK +L+ ++T  GDGVARAFLRA   L G YRDAL++  G+ ITF + +
Sbjct:   300 LSSLPSDVVSALKNKLKKQSTATGDGVARAFLRAQAALFGSYRDALRYKPGEPITFCEES 359

Query:   456 FVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFERE 501
             FV+ R + M+ FL   ++LQ+F+QF + RL  LN+G+GF+D FE E
Sbjct:   360 FVKHRSSVMKQFLETAVNLQLFKQFIDGRLAKLNAGRGFSDIFEEE 405
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0005737 "cytoplasm" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0015031 "protein transport" evidence=IEA
GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO
GO:0031410 "cytoplasmic vesicle" evidence=IEA
GO:0050790 "regulation of catalytic activity" evidence=IEA
UNIPROTKB|Q6P3S1 DENND1B "DENN domain-containing protein 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0027561 CG18659 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBS9 DENND1C "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFU9 DENND1C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2442794 Dennd1a "DENN/MADD domain containing 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3R1 DENND1A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TEH3 DENND1A "DENN domain-containing protein 1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1918035 Dennd1c "DENN/MADD domain containing 1C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MME2 DENND1A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query714
smart00799183 smart00799, DENN, Domain found in a variety of sig 9e-49
pfam02141185 pfam02141, DENN, DENN (AEX-3) domain 7e-42
smart00799183 smart00799, DENN, Domain found in a variety of sig 6e-35
pfam02141185 pfam02141, DENN, DENN (AEX-3) domain 3e-29
pfam0345566 pfam03455, dDENN, dDENN domain 7e-19
smart0080169 smart00801, dDENN, Domain always found downstream 8e-17
smart0080089 smart00800, uDENN, Domain always found upstream of 1e-10
pfam0345662 pfam03456, uDENN, uDENN domain 2e-08
>gnl|CDD|214823 smart00799, DENN, Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN Back     alignment and domain information 
 Score =  168 bits (429), Expect = 9e-49
 Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 88  SDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYG--QIIYAT 145
           +   + I+S LP+ E F K+LN +  +   SS   L   L  +    +P  G   ++ + 
Sbjct: 1   APKCICILSRLPFFELFRKILNELYRLLPSSSNLPLE-LLISLLLYPVPPPGGSLVLVSL 59

Query: 146 SKNTEYTCQAPNQYQLPSIPENKNLTEYC-AIEPVNMLHIFASMLYERRIVITSKRLSRV 204
                   Q P    LP I    +L E    +   N+L +FA++L ERRI+ TS  LS +
Sbjct: 60  GPGDLIELQRPLDSSLPLID--FSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTL 117

Query: 205 SACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVL 264
           SA ++A  +++YP  WQHI+IP++P  LLD L+AP P+++G+     + V+     DVV+
Sbjct: 118 SAVIEALLALLYPFVWQHIYIPILPASLLDVLSAPTPFIIGVHSSYFEEVKELPDEDVVV 177

Query: 265 LNADTN 270
           ++ DT 
Sbjct: 178 VDLDTG 183

The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity. Length = 183
>gnl|CDD|216898 pfam02141, DENN, DENN (AEX-3) domain Back     alignment and domain information
>gnl|CDD|214823 smart00799, DENN, Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN Back     alignment and domain information
>gnl|CDD|216898 pfam02141, DENN, DENN (AEX-3) domain Back     alignment and domain information
>gnl|CDD|202641 pfam03455, dDENN, dDENN domain Back     alignment and domain information
>gnl|CDD|129037 smart00801, dDENN, Domain always found downstream of DENN domain, found in a variety of signalling proteins Back     alignment and domain information
>gnl|CDD|214824 smart00800, uDENN, Domain always found upstream of DENN domain, found in a variety of signalling proteins Back     alignment and domain information
>gnl|CDD|217569 pfam03456, uDENN, uDENN domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 714
KOG3569|consensus425 100.0
KOG3570|consensus 1588 100.0
KOG1090|consensus 1732 100.0
KOG2080|consensus 1295 100.0
smart00799183 DENN Domain found in a variety of signalling prote 100.0
PF02141185 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The 100.0
KOG2127|consensus 1020 99.95
KOG3569|consensus425 99.94
PF02141185 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The 99.88
smart00799183 DENN Domain found in a variety of signalling prote 99.88
KOG2080|consensus 1295 99.78
KOG2127|consensus 1020 99.69
smart0080089 uDENN Domain always found upstream of DENN domain, 99.64
KOG3570|consensus 1588 99.59
PF09794379 Avl9: Transport protein Avl9; InterPro: IPR018307 99.51
smart0080169 dDENN Domain always found downstream of DENN domai 99.41
PF0345568 dDENN: dDENN domain; InterPro: IPR005112 This regi 99.4
PF0345665 uDENN: uDENN domain; InterPro: IPR005113 This regi 99.39
KOG2432|consensus565 99.33
KOG1090|consensus 1732 99.26
KOG3823|consensus630 99.22
PF08616113 SPA: Stabilization of polarity axis 98.2
PF08616113 SPA: Stabilization of polarity axis 97.53
PF09794379 Avl9: Transport protein Avl9; InterPro: IPR018307 97.08
PF07792145 Afi1: Docking domain of Afi1 for Arf3 in vesicle t 93.88
>KOG3569|consensus Back     alignment and domain information 
Probab=100.00  E-value=5e-92  Score=731.51  Aligned_cols=409  Identities=39%  Similarity=0.639  Sum_probs=372.4

Q ss_pred             cccccchhchhchheeEEEEeCCCC---CCCccEEEeCCCCCCCchhcCcCCcccccCCccCC-----cceEEEEEEecC
Q psy946            2 DYFFFSRDNVKHLFECFCEVARPQG---KEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENT-----SVEYYSFVLTDL   73 (714)
Q Consensus         2 ~~~~~~~~~~~~lFe~f~~V~~~~~---~~~P~Il~~yP~~~~d~~~~~~I~~FCFP~g~~~~-----~~~~FsFVLTd~   73 (714)
                      .|... +++++++|||||+|+.++.   .+.|.|+++||+|+.|++.+++||+||||++.++.     ..|+|||||||+
T Consensus         2 ~~~~~-~~~~~~lfe~f~evs~pk~~~~~~~P~v~~QFP~d~~dee~lkaipqFCFP~~~e~~~vs~~~~q~FsFvLTd~   80 (425)
T KOG3569|consen    2 MELRE-RQGVRTLFEYFVEVSLPKKPGNTYLPEVTYQFPPDFQDEEILKAIPQFCFPDAVEWLPVSEYGSQTFSFVLTDE   80 (425)
T ss_pred             Ccchh-ccCcccceeEEEEEecCCCCCCccCccchhhCCCccccHHHHhhchhccCCcccccccccccccceEEEEEEcC
Confidence            44444 8899999999999998753   69999999999999999999999999999999864     459999999999


Q ss_pred             CCCeEEEEeecCCCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCCCceEEEEeCCc-eee
Q psy946           74 DSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNT-EYT  152 (714)
Q Consensus        74 ~G~r~yG~C~~~p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l~~~p~P~pG~~l~~~~~~~-~~~  152 (714)
                      ||+|+|||||..++.++|+||||++|||++|+|+|+.+.+.+...+.+.++.+|..+++.|+|.||.++.+...+. ...
T Consensus        81 dg~rrFGfCRL~~G~~~c~CilS~l~wF~vF~KlLn~v~~~~~~~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~  160 (425)
T KOG3569|consen   81 DGSRRFGFCRLPSGLPECYCILSRLGWFGVFSKLLNEVEDRRGISQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGT  160 (425)
T ss_pred             CCceeeeeEecCCCCCeEEEEeeCCChHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCce
Confidence            9999999999888999999999999999999999999998877667999999999999999999999999877652 233


Q ss_pred             EeCCCCCCCCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccc
Q psy946          153 CQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDL  232 (714)
Q Consensus       153 ~~~P~~~~LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~L  232 (714)
                      .-.|+..+||++++++++++++.                                                         
T Consensus       161 e~ipd~r~LpS~~E~~~f~elf~---------------------------------------------------------  183 (425)
T KOG3569|consen  161 EVIPDTRPLPSILEHVDFTELFV---------------------------------------------------------  183 (425)
T ss_pred             EECcCCCCCCCcccccCHHHHHh---------------------------------------------------------
Confidence            34567778888888777765433                                                         


Q ss_pred             cccccCCccccccccchhhhhhhcccCCCEEEEecCCCcccCCCCCCCCCCcccccccceeecCCcchhhhhhhhccccc
Q psy946          233 LDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERR  312 (714)
Q Consensus       233 ld~leaP~PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErr  312 (714)
                                                                                   +++++||++||+|+|+|||
T Consensus       184 -------------------------------------------------------------als~~qml~ifASlL~ERR  202 (425)
T KOG3569|consen  184 -------------------------------------------------------------ALSVRQMLQIFASLLLERR  202 (425)
T ss_pred             -------------------------------------------------------------hcCHHHHHHHHHHHHhhce
Confidence                                                                         8999999999999999999


Q ss_pred             eeeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCccc
Q psy946          313 IVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLT  392 (714)
Q Consensus       313 II~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~  392 (714)
                      |||+++++|+||+|+||..+|||||.|||+||||||++|+||+||||||+||||+++++++++.+++|||+||+|+|+++
T Consensus       203 Iifia~KLStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~vCaPmPyLIGv~~s~lerv~~~~leeVv~vnld~~tl~  282 (425)
T KOG3569|consen  203 IIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYVCAPMPYLIGVHSSLLERVRELPLEEVVMVNLDENTLE  282 (425)
T ss_pred             eEeeccchhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHhcCCcceeecchHHHHHHHhhCCccceEEEEccCCeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHhhhcHHhhhccCCCCceeecHHHhhhh-cCCChHHHHH
Q psy946          393 TPHDDLNTLPQDVIATLKKQLRNKT--TGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVES-RPAAMQPFLR  469 (714)
Q Consensus       393 ~p~~dl~~LP~~~~~~Lk~~L~~~~--~~d~i~~aFl~~~~~ll~~Yr~~l~~~~~~~~~F~~e~Fl~s-~~~~~~~Fl~  469 (714)
                      ++++|...||+++++.|+++|++..  .||+|+++|+|+|+.++|+|+++++..+++.++|++|+|+++ +++.+|.|++
T Consensus       283 ~~fdD~~~LP~~v~~~Lk~~L~k~~la~~d~Vs~~Flra~v~lfG~Y~~~l~~~~~e~~tF~eE~F~k~~~s~s~r~Fl~  362 (425)
T KOG3569|consen  283 SPFDDVQALPPKVQSALKNRLRKNELATNDGVSRAFLRAFVELFGHYRSALTQSPGEPRTFQEEAFVKQVRSKSMRRFLE  362 (425)
T ss_pred             ccccchhhCCHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHhhhhhhhcccCCCCCceeeHHHHHHHcccHHHHHHHH
Confidence            9999999999999999999998733  499999999999999999999999999999999999999999 5679999999


Q ss_pred             HHHhhhHHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhcccCCccc
Q psy946          470 KMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEF  533 (714)
Q Consensus       470 ~f~eTQmF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~~~~g~~~  533 (714)
                      .|+++|||++||++|+..+|+|.||+|.||+||.... .+.+ -.+.|+.|..+.+|+  ||+.
T Consensus       363 ~~~~~QlF~~FI~~Rl~~~n~g~G~~dqfe~Ei~~~~-~~~~-~~k~~~~~~~~~~K~--~g~~  422 (425)
T KOG3569|consen  363 VFVELQLFKQFIQDRLELKNDGKGFFDQFEEEIEEGL-PSGE-PSKLNKFLKGLGNKM--SGLH  422 (425)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHhcC-CCCC-ccchhhhhhhhcccc--ccee
Confidence            9999999999999999999999999999999998654 3333 246899999999997  6654

>KOG3570|consensus Back     alignment and domain information
>KOG1090|consensus Back     alignment and domain information
>KOG2080|consensus Back     alignment and domain information
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN Back     alignment and domain information
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha Back     alignment and domain information
>KOG2127|consensus Back     alignment and domain information
>KOG3569|consensus Back     alignment and domain information
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha Back     alignment and domain information
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN Back     alignment and domain information
>KOG2080|consensus Back     alignment and domain information
>KOG2127|consensus Back     alignment and domain information
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins Back     alignment and domain information
>KOG3570|consensus Back     alignment and domain information
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth Back     alignment and domain information
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins Back     alignment and domain information
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO Back     alignment and domain information
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO Back     alignment and domain information
>KOG2432|consensus Back     alignment and domain information
>KOG1090|consensus Back     alignment and domain information
>KOG3823|consensus Back     alignment and domain information
>PF08616 SPA: Stabilization of polarity axis Back     alignment and domain information
>PF08616 SPA: Stabilization of polarity axis Back     alignment and domain information
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth Back     alignment and domain information
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query714
3tw8_A391 Gef Domain Of Dennd 1b In Complex With Rab Gtpase R 2e-63
>pdb|3TW8|A Chain A, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 391 Back     alignment and structure 
Iteration: 1

 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 163/226 (72%), Gaps = 4/226 (1%)
Query: 279 LNTLPQDVKNLTEY-CAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPM 337
           L T+P+  +NLTEY  A++  NML ++ASML+ERRIVI S +LS ++AC+  +  ++YPM
Sbjct: 162 LPTIPES-RNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPM 220
Query: 338 CWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDD 397
            WQHI+IP++P  LLDY  APMPY++G+   L++ V+   L DVV+LN DTN L +P  D
Sbjct: 221 YWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSD 280
Query: 398 LNTLPQDVIATLKKQLRNKT--TGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAA 455
           LN LP DV++ LK +L+ ++  TGDGVARAFLRA   L G YRDAL++  G+ ITF + +
Sbjct: 281 LNNLPSDVVSALKNKLKKQSTATGDGVARAFLRAQAALFGSYRDALRYKPGEPITFCEES 340
Query: 456 FVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLNSGQGFTDEFERE 501
           FV+ R + M+ FL   ++LQ+F+QF + RL  LN+G+GF+D FE E
Sbjct: 341 FVKHRSSVMKQFLETAINLQLFKQFIDGRLAKLNAGRGFSDVFEEE 386

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query714
3tw8_A391 DENN domain-containing protein 1B; longin domain, 1e-55
3tw8_A391 DENN domain-containing protein 1B; longin domain, 7e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 391 Back     alignment and structure
 Score =  194 bits (494), Expect = 1e-55
 Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 9/311 (2%)

Query: 7   SRDNVKHLFECFCEVARPQ-GKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLE----NT 61
           ++ N    F+   +V       E   VL KFP  + D+ +L++VPKF +P  +E    N 
Sbjct: 6   TKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQ 65

Query: 62  SVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQ 121
             ++++FVLTD++SK  FG+CR        + I+S LPW E +YKLLN + +        
Sbjct: 66  VGQHFTFVLTDIESKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELEN 125

Query: 122 LLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYC-AIEPVN 180
            L   L  +YN  +P+    +  +  +      AP+   LP+IPE++NLTEY  A++  N
Sbjct: 126 DLNETLRSLYNHPVPKANTPVNLSVHS---YFIAPDVTGLPTIPESRNLTEYFVAVDVNN 182

Query: 181 MLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPM 240
           ML ++ASML+ERRIVI S +LS ++AC+  + +++YPM WQHI+IP++P  LLDY  APM
Sbjct: 183 MLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPM 242

Query: 241 PYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNM 300
           PY++G+   L++ V+   L DVV+LN DTN L +P  DLN LP DV +  +    +    
Sbjct: 243 PYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSDLNNLPSDVVSALKNKLKKQSTA 302

Query: 301 LHIFASMLYER 311
                +  + R
Sbjct: 303 TGDGVARAFLR 313
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 391 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query714
3tw8_A391 DENN domain-containing protein 1B; longin domain, 100.0
3tw8_A391 DENN domain-containing protein 1B; longin domain, 99.89
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.6e-81  Score=685.13  Aligned_cols=378  Identities=42%  Similarity=0.781  Sum_probs=308.7

Q ss_pred             cchhchhchheeEEEEeCCCC-CCCccEEEeCCCCCCCchhcCcCCcccccCCccC----CcceEEEEEEecCCCCeEEE
Q psy946            6 FSRDNVKHLFECFCEVARPQG-KEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLEN----TSVEYYSFVLTDLDSKFTFG   80 (714)
Q Consensus         6 ~~~~~~~~lFe~f~~V~~~~~-~~~P~Il~~yP~~~~d~~~~~~I~~FCFP~g~~~----~~~~~FsFVLTd~~G~r~yG   80 (714)
                      +.|+||.++|||||+|+.+.+ ++.|+|+++||++++|++.+++||.||||+|.++    ..+++|+|||||+||+|+||
T Consensus         5 r~~~~~~~~f~~~~~v~~p~~~~~~p~i~~~fP~~~~d~~~l~~ip~FCfP~~~~~~~~~~~~~~fsFVLTd~dG~r~yg   84 (391)
T 3tw8_A            5 RTKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTDIESKQRFG   84 (391)
T ss_dssp             CSCSSCSSSCSEEEEEEC-----CCCEEEEEESTTCCCHHHHHHHHHHHSCSCHHHHGGGCCSEEEEEEEECTTSCEEEE
T ss_pred             chhcCchhhEEEEEEEeCCCCCCCCCeeeEeCCCCcccchhhhccccccCCCccccCccCCCCceEEEEEecCCCCEEEE
Confidence            569999999999999999865 6999999999999999999999999999999863    35899999999999999999


Q ss_pred             EeecCCCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCCCceEEEEeCCceeeEeCCCCCC
Q psy946           81 YCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQ  160 (714)
Q Consensus        81 ~C~~~p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l~~~p~P~pG~~l~~~~~~~~~~~~~P~~~~  160 (714)
                      ||++.++.++|||||||+||+++|+++|+.|+..+.+.....+|.+++.++++|+|.||+++++....   .++.|...+
T Consensus        85 ~Cr~~~~~~k~icilS~lp~f~~F~k~L~~l~~~~~~~~~~~le~~~~~l~~~P~P~pG~~v~l~~~~---~~~~P~~~~  161 (391)
T 3tw8_A           85 FCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHPVPKANTPVNLSVHS---YFIAPDVTG  161 (391)
T ss_dssp             EEEECTTSSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCCSCC-------------------C
T ss_pred             EEEccCCCceEEEEEeCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhhCCCCCCCCeEEEeccc---eeeCCCCCC
Confidence            99999999999999999999999999999999988777788999999999999999999997776421   223444444


Q ss_pred             CCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCc
Q psy946          161 LPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPM  240 (714)
Q Consensus       161 LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~  240 (714)
                      +|.++++.++                                                                      
T Consensus       162 Lp~~~~~~~~----------------------------------------------------------------------  171 (391)
T 3tw8_A          162 LPTIPESRNL----------------------------------------------------------------------  171 (391)
T ss_dssp             CCCBTTSHHH----------------------------------------------------------------------
T ss_pred             CCCCCCCCCH----------------------------------------------------------------------
Confidence            5443322111                                                                      


Q ss_pred             cccccccchhhhhhhcccCCCEEEEecCCCcccCCCCCCCCCCcccccccceeecCCcchhhhhhhhccccceeeecccc
Q psy946          241 PYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRL  320 (714)
Q Consensus       241 PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~l  320 (714)
                                                                      ...|.+|+++|++.+|+++|+||||||+|+++
T Consensus       172 ------------------------------------------------~~Lf~~L~~~~il~l~~~~LlE~rIl~~S~~~  203 (391)
T 3tw8_A          172 ------------------------------------------------TEYFVAVDVNNMLQLYASMLHERRIVIISSKL  203 (391)
T ss_dssp             ------------------------------------------------HHHHHHSCHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             ------------------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCEEEEeCCH
Confidence                                                            11234788999999999999999999999999


Q ss_pred             cchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCCCCCC
Q psy946          321 SRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNT  400 (714)
Q Consensus       321 s~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~dl~~  400 (714)
                      ++||.|++|+.+|||||+|||+|||+||.+++|||+||+|||||||++.++.+.+.+.+|+++||||+|++..+.++++.
T Consensus       204 ~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~l~aP~PfiiGv~~~~~~~~~~~~~~dvvvVDLD~~~i~~~~~d~~~  283 (391)
T 3tw8_A          204 STLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSDLNN  283 (391)
T ss_dssp             HHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGGGGCSSCEEEEEETTTHHHHHTSCCCSCEEEETTTTEEECSCCTGGG
T ss_pred             HHHHHHHHHHHHHhcCcccCcceEeecCHHHHhHhcCCCCEEEEecchhHHHhhccCCCCEEEEEcCCCeEeCCCccccc
Confidence            99999999999999999999999999999999999999999999999999988776789999999999999999889999


Q ss_pred             CCHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHhhhcHHhhhccCCCCceeecHHHhhhhcCCChHHHHHHHHhhhHHH
Q psy946          401 LPQDVIATLKKQLRNKT--TGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQ  478 (714)
Q Consensus       401 LP~~~~~~Lk~~L~~~~--~~d~i~~aFl~~~~~ll~~Yr~~l~~~~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~  478 (714)
                      ||++..+.|+++|++..  .+++|++||+++|++++|+||++++..+++.++||+++|+++++.+.++|+++|++||||+
T Consensus       284 LP~~~~~~L~~~L~~~~~~~~~~v~~aFlrf~~~llg~Yr~~l~~~~~~~~~F~~~~Fl~~r~~~~~~Fl~~~~~TQmF~  363 (391)
T 3tw8_A          284 LPSDVVSALKNKLKKQSTATGDGVARAFLRAQAALFGSYRDALRYKPGEPITFCEESFVKHRSSVMKQFLETAINLQLFK  363 (391)
T ss_dssp             SCHHHHHHHHHHHTSGGGGSBTHHHHHHHHHHHHHHGGGCC---------CCCCHHHHSCCSSHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHhHHHHhhccCCCCceEecHHHHhhccChhhhHHHHHHHHhhHHH
Confidence            99999999999998754  3889999999999999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCcchhHHHHhh
Q psy946          479 QFKEERLNMLNSGQGFTDEFEREACN  504 (714)
Q Consensus       479 ~FIeerl~~~ns~~~f~D~Fe~e~~~  504 (714)
                      +||++|++++|+|.||+|.||+||+.
T Consensus       364 ~FI~eRl~~ln~~~~~~d~fe~ei~~  389 (391)
T 3tw8_A          364 QFIDGRLAKLNAGRGFSDVFEEEITS  389 (391)
T ss_dssp             HHHHHHHHHTC---------------
T ss_pred             HHHHHHHHhhcCCCCCCcHHHHHhhc
Confidence            99999999999999999999999975
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00