Psyllid ID: psy9480

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MMAAPRLGELWENEAGTSTQALRPRPKEATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPSNDDSENQSSNSDHQASTLLAL
cccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccEEEccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEccccccccHHHHHHHHHHcccccEEEEccccccccccEEEEcccHHHHccccccEEEEEccccccccccccEEEEEEEEEEccccEEEEEcccEEEEEccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccEEEccEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccc
cccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHcccEEEcccccccEEEEccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEccccEEcccHHHHHHHHHHHcccccEEEEccccccccEEEEEccHHHcccccccEEEEEEEcccEEEcccEEEEEEEEEEEccccEEEEEEcccEEEEEEEEccccccccccccEEEEEEcEEEccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHEEcHHHHEccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHccc
mmaaprlgelweneagtstqalrprpkeatINLKRCMYKIVEDVATLMGMgivrddeepwdvywSDFSVSTVMSKSMEVYHRinhfpgmanlESKAFLAYHLNRMrnhfpedydfyprswslpyqqedFLSYvrehphqvfiskpsrgaegkgikIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITcidplrifvynnglvrlatcqytspetgnltnqYMHLTNYSvnkssenynkspergskrdFTALNSWLLSqglnstklwnDIDDIIIKTIISVYPILKEKyedllpehyhhnvsaSFEILGFDIlidstmkpfllevnrspsfniagivDERVKRTLIYDTFKILnlnqnrksilfpsnddsenqssnsdhqASTLLAL
mmaaprlgelweneagtstqalrprpkeatinlkrCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVfiskpsrgaegkGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSpsfniagivderVKRTLIYDTFkilnlnqnrKSILFpsnddsenqssnsdhqastllal
MMAAPRLGELWENEAGTSTQALRPRPKEATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNdiddiiiktiiSVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPsnddsenqssnsdHQASTLLAL
*****************************TINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNY********************FTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSI*************************
******************************INLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNL********************************
MMAAPRLGELWENEAGTSTQALRPRPKEATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNK************SKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPS*********************
*********************LRPRPKEATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPSNDDSEN***************
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MMAAPRLGELWENEAGTSTQALRPRPKEATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPSNDDSENQSSNSDHQASTLLAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
Q8N841 843 Tubulin polyglutamylase T yes N/A 0.853 0.399 0.450 1e-84
A8CVX7 778 Tubulin polyglutamylase t yes N/A 0.848 0.430 0.444 2e-83
A4Q9E8 822 Tubulin polyglutamylase T yes N/A 0.853 0.409 0.441 2e-83
A6NNM8 815 Tubulin polyglutamylase T no N/A 0.837 0.406 0.459 8e-78
A4Q9F6 804 Tubulin polyglutamylase T no N/A 0.837 0.411 0.450 1e-76
A4Q9F0 912 Tubulin polyglutamylase T no N/A 0.855 0.370 0.385 2e-65
Q6ZT98 887 Tubulin polyglutamylase T no N/A 0.855 0.381 0.379 5e-64
Q23MT7 1189 Probable beta-tubulin pol N/A N/A 0.724 0.240 0.405 2e-59
A4Q9F4 727 Tubulin polyglutamylase T no N/A 0.777 0.422 0.376 2e-54
A4Q9E4 540 Probable tubulin polyglut no N/A 0.744 0.544 0.370 3e-45
>sp|Q8N841|TTLL6_HUMAN Tubulin polyglutamylase TTLL6 OS=Homo sapiens GN=TTLL6 PE=1 SV=2 Back     alignment and function desciption
 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 154/342 (45%), Positives = 218/342 (63%), Gaps = 5/342 (1%)

Query: 31  INLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPGMA 90
           INL  C Y+ V   A   G     +D++ W +YW+D+SVS      M+ Y +INHFPGM+
Sbjct: 63  INLSSCRYESVRRAAQQYGFREGGEDDD-WTLYWTDYSVSLERVMEMKSYQKINHFPGMS 121

Query: 91  NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAE 150
            +  K  LA +++RM   FP+D+ F+PR+W LP    D  +Y R   ++ +I KP  G +
Sbjct: 122 EICRKDLLARNMSRMLKMFPKDFRFFPRTWCLPADWGDLQTYSRSRKNKTYICKPDSGCQ 181

Query: 151 GKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210
           GKGI I  T++E +    + + QLY+S   ++DGFKFDLR+YVL+T  DPLRIFVYN GL
Sbjct: 182 GKGIFITRTVKEIKP-GEDMICQLYISKPFIIDGFKFDLRIYVLVTSCDPLRIFVYNEGL 240

Query: 211 VRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLN 270
            R AT  Y+ P T NL +  MHLTNYS+NK S N+++    GSKR  +  +++L     N
Sbjct: 241 ARFATTSYSRPCTDNLDDICMHLTNYSINKHSSNFSRDAHSGSKRKLSTFSAYLEDHSYN 300

Query: 271 STKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFL 330
             ++W DI+D+IIKT+IS +PI++  Y    P H  +  SA FEILGFDIL+D  +KP+L
Sbjct: 301 VEQIWRDIEDVIIKTLISAHPIIRHNYHTCFPNHTLN--SACFEILGFDILLDHKLKPWL 358

Query: 331 LEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQ-NRKSIL 371
           LEVN SPSF+    +D+ VK  L+YDT  ++NL   ++K +L
Sbjct: 359 LEVNHSPSFSTDSRLDKEVKDGLLYDTLVLINLESCDKKKVL 400
Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -
>sp|A8CVX7|TTLL6_DANRE Tubulin polyglutamylase ttll6 OS=Danio rerio GN=ttll6 PE=2 SV=1 Back     alignment and function description
>sp|A4Q9E8|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 OS=Mus musculus GN=Ttll6 PE=2 SV=1 Back     alignment and function description
>sp|A6NNM8|TTL13_HUMAN Tubulin polyglutamylase TTLL13 OS=Homo sapiens GN=TTLL13 PE=2 SV=2 Back     alignment and function description
>sp|A4Q9F6|TTL13_MOUSE Tubulin polyglutamylase TTLL13 OS=Mus musculus GN=Ttll13 PE=2 SV=1 Back     alignment and function description
>sp|A4Q9F0|TTLL7_MOUSE Tubulin polyglutamylase TTLL7 OS=Mus musculus GN=Ttll7 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZT98|TTLL7_HUMAN Tubulin polyglutamylase TTLL7 OS=Homo sapiens GN=TTLL7 PE=2 SV=2 Back     alignment and function description
>sp|Q23MT7|TTL6A_TETTS Probable beta-tubulin polyglutamylase OS=Tetrahymena thermophila (strain SB210) GN=Ttll6a PE=4 SV=1 Back     alignment and function description
>sp|A4Q9F4|TTL11_MOUSE Tubulin polyglutamylase TTLL11 OS=Mus musculus GN=Ttll11 PE=2 SV=1 Back     alignment and function description
>sp|A4Q9E4|TTLL2_MOUSE Probable tubulin polyglutamylase TTLL2 OS=Mus musculus GN=Ttll2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
426238966 945 PREDICTED: LOW QUALITY PROTEIN: tubulin 0.845 0.353 0.475 4e-86
297486955 901 PREDICTED: LOW QUALITY PROTEIN: tubulin 0.845 0.370 0.472 1e-85
307212005 1087 Tubulin polyglutamylase ttll6 [Harpegnat 0.855 0.310 0.454 4e-85
357610611 656 putative tubulin tyrosine ligase-like fa 0.860 0.518 0.463 5e-85
440910517459 Tubulin polyglutamylase TTLL6, partial [ 0.848 0.729 0.468 9e-85
363737658 889 PREDICTED: tubulin polyglutamylase TTLL1 0.845 0.375 0.458 1e-84
322784896 828 hypothetical protein SINV_80206 [Solenop 0.840 0.400 0.455 2e-84
449270621 540 Tubulin polyglutamylase TTLL13, partial 0.855 0.625 0.457 5e-84
296202566 888 PREDICTED: LOW QUALITY PROTEIN: tubulin 0.848 0.377 0.459 9e-84
328723417442 PREDICTED: tubulin polyglutamylase TTLL6 0.873 0.780 0.449 1e-83
>gi|426238966|ref|XP_004013407.1| PREDICTED: LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL6 [Ovis aries] Back     alignment and taxonomy information
 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 164/345 (47%), Positives = 222/345 (64%), Gaps = 11/345 (3%)

Query: 31  INLKRCMYKIVEDVATLMGM--GIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRINHFPG 88
           INL  C Y+ V   A   G+  G   DD   W +YW+DFSVS      M+ Y +INHFPG
Sbjct: 161 INLSSCRYESVRRAAQQYGLREGGENDD---WTLYWTDFSVSLERVMEMKSYQKINHFPG 217

Query: 89  MANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRG 148
           M+ +  K  LA +++RM   FP+D+ F+PR+W LP    D  +Y R   ++ +I KP  G
Sbjct: 218 MSEICRKDLLARNMSRMLKMFPKDFHFFPRTWCLPADWGDLQNYSRSRKNKTYICKPDSG 277

Query: 149 AEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNN 208
            +GKGI I  T++E +    + + QLY+S   ++DGFKFDLR+YVL+T  DPLRIFVYN 
Sbjct: 278 CQGKGIFITRTVKEIKP-GEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPLRIFVYNE 336

Query: 209 GLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQG 268
           GL R AT  Y+ P T NL +  MHLTNYS+NK S N+ +    GSKR  +  N+++ S G
Sbjct: 337 GLARFATTSYSHPCTDNLNDICMHLTNYSINKHSANFLQDAHSGSKRKLSTFNTYMESHG 396

Query: 269 LNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNV-SASFEILGFDILIDSTMK 327
            N T++W DI+D+IIKTIIS YPI+K  Y    P   HH + SA FEILGFDIL+D  +K
Sbjct: 397 YNVTQIWRDIEDVIIKTIISAYPIIKHNYHTCFP---HHTLNSACFEILGFDILLDHKLK 453

Query: 328 PFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQ-NRKSIL 371
           P+LLEVN SPSF+    +D+ VK +L+YDT  ++NL   ++K +L
Sbjct: 454 PWLLEVNHSPSFSTDSWLDKEVKDSLLYDTLVLINLRSCDKKKVL 498

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Order:

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|297486955|ref|XP_002695986.1| PREDICTED: LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL6 [Bos taurus] gi|296476557|tpg|DAA18672.1| TPA: tubulin tyrosine ligase-like family, member 6 [Bos taurus] Back     alignment and taxonomy information
>gi|307212005|gb|EFN87900.1| Tubulin polyglutamylase ttll6 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|357610611|gb|EHJ67062.1| putative tubulin tyrosine ligase-like family, member 6 [Danaus plexippus] Back     alignment and taxonomy information
>gi|440910517|gb|ELR60311.1| Tubulin polyglutamylase TTLL6, partial [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|363737658|ref|XP_429033.3| PREDICTED: tubulin polyglutamylase TTLL13 [Gallus gallus] Back     alignment and taxonomy information
>gi|322784896|gb|EFZ11676.1| hypothetical protein SINV_80206 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|449270621|gb|EMC81280.1| Tubulin polyglutamylase TTLL13, partial [Columba livia] Back     alignment and taxonomy information
>gi|296202566|ref|XP_002806901.1| PREDICTED: LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL6 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|328723417|ref|XP_001946028.2| PREDICTED: tubulin polyglutamylase TTLL6-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
UNIPROTKB|E1BIV0 837 TTLL6 "Uncharacterized protein 0.865 0.408 0.435 2.1e-75
UNIPROTKB|G3N2U5 847 TTLL6 "Uncharacterized protein 0.865 0.403 0.435 2.1e-75
UNIPROTKB|F1RWF8 834 TTLL6 "Uncharacterized protein 0.883 0.418 0.431 7.3e-75
RGD|1311922 820 Ttll6 "tubulin tyrosine ligase 0.868 0.418 0.416 2.8e-73
UNIPROTKB|Q8N841 843 TTLL6 "Tubulin polyglutamylase 0.868 0.406 0.422 3.6e-73
MGI|MGI:2683461 822 Ttll6 "tubulin tyrosine ligase 0.868 0.417 0.416 9.6e-73
ZFIN|ZDB-GENE-080107-1 778 ttll6 "tubulin tyrosine ligase 0.870 0.442 0.415 2e-72
UNIPROTKB|E2RTL2 888 TTLL6 "Uncharacterized protein 0.865 0.385 0.410 2.9e-71
UNIPROTKB|A6NNM8 815 TTLL13 "Tubulin polyglutamylas 0.875 0.424 0.42 4.8e-71
UNIPROTKB|F1P1K7 525 TTLL13 "Uncharacterized protei 0.817 0.615 0.426 9.9e-71
UNIPROTKB|E1BIV0 TTLL6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 152/349 (43%), Positives = 213/349 (61%)

Query:    25 RPKEATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVYHRIN 84
             + K   INL  C Y+ V   A   G+    ++++ W +YW+DFSVS      M+ Y +IN
Sbjct:    57 KKKRLVINLSSCRYESVRRAAQQYGLREGGENDD-WTLYWTDFSVSLERVMEMKSYQKIN 115

Query:    85 HFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISK 144
             HFPGM+ +  K  LA +++RM   FP+D+ F+PR+W LP    D  +Y R   ++ +I K
Sbjct:   116 HFPGMSEICRKDLLARNMSRMLKMFPKDFHFFPRTWCLPADWGDLQNYSRSRKNKTYICK 175

Query:   145 PSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIF 204
             P  G +GKGI I  T++E +    + + QLY+S   ++DGFKFDLR+YVL+T  DPLRIF
Sbjct:   176 PDSGCQGKGIFITRTVKEIKP-GEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPLRIF 234

Query:   205 VYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWL 264
             VYN GL R AT  Y+ P T NL +  MHLTNYS+NK S N+ +    GSKR  +  N+++
Sbjct:   235 VYNEGLARFATTSYSHPCTDNLNDICMHLTNYSINKHSANFLQDAHSGSKRKLSTFNTYM 294

Query:   265 LSQGLNSTKLWNXXXXXXXXXXXSVYPILKEKYEDLLPEHYHHNV-SASFEILGFDILID 323
              S G N  ++W            S YPI+K  Y    P   HH + SA FEILGFDIL+D
Sbjct:   295 ESHGYNVAQIWRDIEDVIIKTIISAYPIIKHNYHTCFP---HHTLNSACFEILGFDILLD 351

Query:   324 STMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQ-NRKSIL 371
               +KP+LLEVN SPSF+    +D+ VK +L+YDT  ++NL   ++K +L
Sbjct:   352 HKLKPWLLEVNHSPSFSTDSWLDKEVKDSLLYDTLVLINLRSCDKKKVL 400
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA
UNIPROTKB|G3N2U5 TTLL6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWF8 TTLL6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1311922 Ttll6 "tubulin tyrosine ligase-like family, member 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N841 TTLL6 "Tubulin polyglutamylase TTLL6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2683461 Ttll6 "tubulin tyrosine ligase-like family, member 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080107-1 ttll6 "tubulin tyrosine ligase-like family, member 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTL2 TTLL6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NNM8 TTLL13 "Tubulin polyglutamylase TTLL13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1K7 TTLL13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
pfam03133291 pfam03133, TTL, Tubulin-tyrosine ligase family 4e-78
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family Back     alignment and domain information 
 Score =  242 bits (620), Expect = 4e-78
 Identities = 100/290 (34%), Positives = 153/290 (52%), Gaps = 11/290 (3%)

Query: 73  MSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSY 132
           +      +  +NHFPG   +  K  L  ++ R    F   +DF PR++ LP    +F+ Y
Sbjct: 1   ILLDEPYHQALNHFPGSYEITRKDLLWKNIKRQPCDFGRKFDFLPRTFILPTDLAEFVDY 60

Query: 133 VREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTE--SVSQLYMSNLLLMDGFKFDLR 190
             ++    +I KPS  A G+GI+I N L +          V Q Y+   LL+DG KFD+R
Sbjct: 61  FEDNERNTWIVKPSASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDGRKFDIR 120

Query: 191 VYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPE 250
           +YVL+T ++PLR++VY  GL+R A+ +Y SP   +L +  MHLTNYS+ K S + N+   
Sbjct: 121 LYVLVTSVNPLRVYVYREGLLRFASVKY-SPSVSDLDDVEMHLTNYSIQKKSSSLNEDYN 179

Query: 251 RGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVS 310
             +   ++  N W   +  +  ++W +I+ IIIKTI++         E          + 
Sbjct: 180 EPNGHKWSLFNFWKYLEEKDKEEIWLEIESIIIKTILAA--------EVEASRLNVQPLY 231

Query: 311 ASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKI 360
             FE+ GFD +ID  +KP+LLEVN SPS +    +D R+K  LI D    
Sbjct: 232 NCFELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVLNS 281

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG2156|consensus 662 100.0
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 100.0
KOG2157|consensus497 100.0
KOG2158|consensus565 100.0
KOG2155|consensus631 100.0
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 99.94
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 99.25
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 99.2
PLN02941328 inositol-tetrakisphosphate 1-kinase 99.19
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.13
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.13
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.13
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 99.09
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.05
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.04
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.03
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 99.01
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.01
PRK14570364 D-alanyl-alanine synthetase A; Provisional 98.98
PRK14571299 D-alanyl-alanine synthetase A; Provisional 98.97
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 98.96
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 98.93
PRK14569296 D-alanyl-alanine synthetase A; Provisional 98.9
PRK05246316 glutathione synthetase; Provisional 98.88
PRK14572347 D-alanyl-alanine synthetase A; Provisional 98.85
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 98.79
PRK12458338 glutathione synthetase; Provisional 98.74
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 98.69
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 98.69
PLN02257434 phosphoribosylamine--glycine ligase 98.58
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 98.56
PRK06849389 hypothetical protein; Provisional 98.54
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 98.53
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 98.51
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 98.46
PRK07206416 hypothetical protein; Provisional 98.44
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 98.44
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 98.43
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 98.41
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 98.4
PRK14016 727 cyanophycin synthetase; Provisional 98.34
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 98.33
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 98.33
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 98.3
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 98.29
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 98.28
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 98.28
PRK05586447 biotin carboxylase; Validated 98.27
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.27
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 98.24
PRK06524 493 biotin carboxylase-like protein; Validated 98.24
PRK08462445 biotin carboxylase; Validated 98.23
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 98.23
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 98.2
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 98.18
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 98.17
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 98.16
PRK02186 887 argininosuccinate lyase; Provisional 98.1
PRK07178472 pyruvate carboxylase subunit A; Validated 98.09
PLN02948 577 phosphoribosylaminoimidazole carboxylase 98.09
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 98.09
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 98.06
PRK12999 1146 pyruvate carboxylase; Reviewed 98.02
PRK08654499 pyruvate carboxylase subunit A; Validated 98.0
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 97.99
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 97.98
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 97.94
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 97.93
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 97.88
PRK05784 486 phosphoribosylamine--glycine ligase; Provisional 97.86
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 97.77
PLN02735 1102 carbamoyl-phosphate synthase 97.75
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 97.75
PLN02735 1102 carbamoyl-phosphate synthase 97.73
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 97.73
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 97.66
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 97.55
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 97.51
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 97.49
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 97.26
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 97.18
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 97.07
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 96.82
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 96.64
COG2232389 Predicted ATP-dependent carboligase related to bio 96.61
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 96.5
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 96.41
KOG0369|consensus 1176 96.09
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 96.01
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 95.89
KOG3895|consensus488 95.54
KOG0238|consensus 670 95.26
KOG2158|consensus 565 94.15
COG2308488 Uncharacterized conserved protein [Function unknow 93.17
COG3919415 Predicted ATP-grasp enzyme [General function predi 92.05
TIGR02049403 gshA_ferroox glutamate--cysteine ligase, T. ferroo 91.15
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 90.77
PF08886404 GshA: Glutamate-cysteine ligase; InterPro: IPR0117 90.22
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 83.19
PF04174 330 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; In 82.31
>KOG2156|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.9e-69  Score=528.37  Aligned_cols=354  Identities=33%  Similarity=0.568  Sum_probs=314.8

Q ss_pred             CCCcCCCcccccc--CCCcccCCCCCCceEEEeCCCc----HHHHHHHHHhCCCEEecCCCCCeEEEEcccCCChhhhhc
Q psy9480           3 AAPRLGELWENEA--GTSTQALRPRPKEATINLKRCM----YKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKS   76 (395)
Q Consensus         3 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~~~~~~~~~~   76 (395)
                      |+|.+-.-=||..  +++..++.+.|+.+-.-+..+-    -.+|++++...||++++..+ +|..+|+.. .....++.
T Consensus       165 v~PSlfp~VpP~i~f~s~~~k~~k~p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~-dw~g~Wg~h-~ksp~fr~  242 (662)
T KOG2156|consen  165 VLPSLFPRVPPTILFDSSADKVPKPPPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVND-DWMGVWGHH-LKSPSFRA  242 (662)
T ss_pred             echhhcCCCCCeeeeccccccCCCCChhHHHHhccCCcchhHHHHHHHHHhcccEEecccc-hHHHHhhhh-cCCchhhh
Confidence            4565555556666  4555666655555555555543    35889999999999999998 999999985 55566788


Q ss_pred             CCccceecccCCCCcccchHHHHHHHHHHHhhCCC-CCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceE
Q psy9480          77 MEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPE-DYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIK  155 (395)
Q Consensus        77 l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~-~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~  155 (395)
                      +.++|+||||||+.-|+|||.|++++.++..++.. +++|+|+||+||.|+++|.++++++....|||||.+.+||.||.
T Consensus       243 ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIr  322 (662)
T KOG2156|consen  243 IRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIR  322 (662)
T ss_pred             hhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceE
Confidence            99999999999999999999999999999988875 89999999999999999999999988888999999999999999


Q ss_pred             eeCChHHHhcccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecc
Q psy9480         156 IFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTN  235 (395)
Q Consensus       156 li~~~~~i~~~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN  235 (395)
                      ++++..++ ....+.|||+||++|+||+|.|||+|+||.|||.+||+||+|++|++|||+.+|.+. .+++.|.+||+||
T Consensus       323 v~~kw~q~-pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~-~a~~~dKymhltn  400 (662)
T KOG2156|consen  323 VINKWSQF-PKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPF-DANNVDKYMHLTN  400 (662)
T ss_pred             eccchhhC-CCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcc-cccccceeEEecc
Confidence            99999999 778889999999999999999999999999999999999999999999999999974 4778899999999


Q ss_pred             cccccCCCCCCCCCC----CCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCC
Q psy9480         236 YSVNKSSENYNKSPE----RGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSA  311 (395)
Q Consensus       236 ~~i~k~~~~~~~~~~----~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  311 (395)
                      |+++|.+. |...+.    .|++|++.+++.++..+|++.++||.+|+++|.+++++.+..+...++....     ....
T Consensus       401 Ys~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qGvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~-----~~~~  474 (662)
T KOG2156|consen  401 YSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQGVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVE-----NPYS  474 (662)
T ss_pred             ccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhc-----CCch
Confidence            99999877 544332    7999999999999999999999999999999999999999988887776543     3467


Q ss_pred             ceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcccccc
Q psy9480         312 SFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQN  366 (395)
Q Consensus       312 ~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~~~  366 (395)
                      |||++||||++|++++|||||||.+|++...+++|-.+|..||.++|+++++...
T Consensus       475 CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p  529 (662)
T KOG2156|consen  475 CFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVP  529 (662)
T ss_pred             hhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecC
Confidence            9999999999999999999999999999999999999999999999999998543

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>KOG2155|consensus Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>KOG0369|consensus Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3895|consensus Back     alignment and domain information
>KOG0238|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>COG2308 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria [] Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
4i4t_F384 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 6e-15
3tig_A380 Tubulin Tyrosine Ligase Length = 380 3e-13
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 138/305 (45%), Gaps = 55/305 (18%)
Query: 83  INHFPGMANLESKAFLAY------HLNRMRNHFPEDYDFYPRSWSLPY------------ 124
           +N++ G   L  KA L         L+     FPE Y  YP +   P             
Sbjct: 62  VNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLIN 121
Query: 125 -----QQEDFLS-YVREHPHQ---VFISKPSRGAEGKGIKIFNTLEEARGIYTES----V 171
                ++E FL+ Y R    +   V+I+K S GA+G+GI I +   E      E     V
Sbjct: 122 NTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHV 181
Query: 172 SQLYMSNLLLMDGF--KFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQ 229
            Q Y+   LL++    KFD+R +VL+  +    I++Y  G++R ++  Y S    N  ++
Sbjct: 182 IQKYLEKPLLLEPGHRKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPYNS---ANFQDK 236
Query: 230 YMHLTNYSVNKS-SENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNXXXXXXXXXXXS 288
             HLTN+ + K  S+NY +  E G++  F   N +L+   LN+T L N           S
Sbjct: 237 TCHLTNHCIQKEYSKNYGRY-EEGNEMFFEEFNQYLMD-ALNTT-LENSILLQIKHIIRS 293
Query: 289 VYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN-------I 341
               ++     +  +H H+    SF++ GFD ++D  +K +L+EVN +P+          
Sbjct: 294 CLMCIEPA---ISTKHLHYQ---SFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELC 347
Query: 342 AGIVD 346
            GIVD
Sbjct: 348 QGIVD 352
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 3e-82
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 Back     alignment and structure
 Score =  255 bits (653), Expect = 3e-82
 Identities = 75/371 (20%), Positives = 146/371 (39%), Gaps = 54/371 (14%)

Query: 36  CMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSV--STVMSKSMEVYHRINHFPGMANLE 93
              ++ + +        ++ D   +++   + +      +     +   +N++ G   L 
Sbjct: 16  VYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLC 75

Query: 94  SKAFLAYHLNRMR------NHFPEDYDFYPRSWSLP-----------------YQQEDFL 130
            KA L   +            FPE Y  YP +   P                  ++E+F 
Sbjct: 76  RKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFR 135

Query: 131 SYVRE----HPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTES----VSQLYMSNLLLM 182
           S   +        V+I+K S GA+G+GI I +   E            V Q Y+ + LL+
Sbjct: 136 SSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLL 195

Query: 183 D--GFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNK 240
           +    KFD+R +VL+   +   I++Y  G++R ++  Y+     N  +   HLTN+ + K
Sbjct: 196 EPGHRKFDIRSWVLVD--NQYNIYLYREGVLRTSSEPYSDT---NFQDMTSHLTNHCIQK 250

Query: 241 SSENYNKSPERGSKRDFTALNSWLLSQGLNS--TKLWNDIDDIIIKTIISVYPILKEKYE 298
                    E G++  F   N +L++    +    +   I +II   +  + P +  KY 
Sbjct: 251 EHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKY- 309

Query: 299 DLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTF 358
                 YH     SF++ GFD ++D  +K +L+EVN +P+      +   + + ++    
Sbjct: 310 ----LPYH-----SFQLFGFDFMVDKNLKVWLIEVNGAPACAQK--LYAELCKGIVDLAI 358

Query: 359 KILNLNQNRKS 369
             +        
Sbjct: 359 SSVFPLNEENH 369
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 100.0
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 99.16
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.15
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.08
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.07
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 99.06
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.03
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.03
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 99.03
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.03
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.03
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 99.02
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.01
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.0
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 99.0
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.0
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 98.9
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 98.88
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.88
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 98.87
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 98.82
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.77
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 98.73
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 98.72
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.71
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 98.67
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.63
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 98.62
3ouz_A446 Biotin carboxylase; structural genomics, center fo 98.62
1ulz_A 451 Pyruvate carboxylase N-terminal domain; biotin car 98.61
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 98.6
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 98.6
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 98.58
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 98.58
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 98.56
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 98.52
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 98.51
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 98.5
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 98.48
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 98.44
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 98.43
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 98.41
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 98.4
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 98.39
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 98.38
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 98.37
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 98.36
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 98.35
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 98.35
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 98.35
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 98.34
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 98.33
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 98.33
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 98.29
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 98.28
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 98.27
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 98.26
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 98.02
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 98.0
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 97.99
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 97.95
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 97.95
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 97.91
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 97.78
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 97.72
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 97.69
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 97.46
3n6x_A474 Putative glutathionylspermidine synthase; domain o 97.13
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 97.09
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 96.51
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 92.48
3k1t_A432 Glutamate--cysteine ligase GSHA; putative gamma-gl 91.32
2vob_A652 Trypanothione synthetase; ligase; 2.3A {Leishmania 87.13
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-71  Score=542.77  Aligned_cols=322  Identities=25%  Similarity=0.422  Sum_probs=239.4

Q ss_pred             CCCcHHHHHHHHHhCC-CEEecCCCCCeEEEEcccCC-ChhhhhcC-CccceecccCCCCcccchHHHHHHHHHHHhhCC
Q psy9480          34 KRCMYKIVEDVATLMG-MGIVRDDEEPWDVYWSDFSV-STVMSKSM-EVYHRINHFPGMANLESKAFLAYHLNRMRNHFP  110 (395)
Q Consensus        34 ~~~~~~~v~~~~~~~g-~~~~~~~~~~~~i~W~~~~~-~~~~~~~l-~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~  110 (395)
                      +.+.|+.|+++|++.| |.++++++.+|||+|++... +...+... .++|+||||||+++||+|+.|+++|+++. ..+
T Consensus        13 ~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~   91 (380)
T 3tig_A           13 NSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT   91 (380)
T ss_dssp             SCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH
T ss_pred             CccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcc
Confidence            4567999999999999 99998776689999998653 33444433 67899999999999999999999999854 457


Q ss_pred             CCCCcccCeeec-cc-----------------------hHHHHHHHHHc----CCCcEEEEcCCCCCCCCceEeeCChHH
Q psy9480         111 EDYDFYPRSWSL-PY-----------------------QQEDFLSYVRE----HPHQVFISKPSRGAEGKGIKIFNTLEE  162 (395)
Q Consensus       111 ~~~~~~P~T~~L-p~-----------------------~~~~f~~~~~~----~~~~~wIvKP~~gs~G~GI~li~~~~~  162 (395)
                      +.++|+|+||.| |.                       |+++|++.+++    +.+++||+||.++++|+||.++++.++
T Consensus        92 ~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~  171 (380)
T 3tig_A           92 ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATE  171 (380)
T ss_dssp             TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHH
T ss_pred             cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHH
Confidence            789999999999 75                       45678888764    467899999999999999999999998


Q ss_pred             Hhc----ccCcceeeecccccccc--CCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceeccc
Q psy9480         163 ARG----IYTESVSQLYMSNLLLM--DGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNY  236 (395)
Q Consensus       163 i~~----~~~~~IvQ~YI~~PlLi--~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~  236 (395)
                      +..    ....+|||+||++|+||  +|+|||||+||||||  ||++|+|++|++|||+++|+.   .|+++.++||||+
T Consensus       172 i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~---~~~~~~~~HLTN~  246 (380)
T 3tig_A          172 LLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD---TNFQDMTSHLTNH  246 (380)
T ss_dssp             HHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC---------------------
T ss_pred             HHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc---cchhhhhhhcccc
Confidence            843    35679999999999999  999999999999998  999999999999999999987   6888999999999


Q ss_pred             ccccC-CCCCCCCCCCCCccChHHHHHHHHHc-CCCh-hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCce
Q psy9480         237 SVNKS-SENYNKSPERGSKRDFTALNSWLLSQ-GLNS-TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASF  313 (395)
Q Consensus       237 ~i~k~-~~~~~~~~~~g~~~~l~~l~~~l~~~-g~~~-~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~F  313 (395)
                      ++||+ +++|...+ .|++|++++|.+||++. |.++ +.+|++|+++|..++.|+++.+...          ..+.+||
T Consensus       247 ~iqk~~~~~y~~~~-~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~----------~~~~~~F  315 (380)
T 3tig_A          247 CIQKEHSKNYGRYE-EGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTK----------YLPYHSF  315 (380)
T ss_dssp             -----------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCT----------TSSSEEC
T ss_pred             cccccccccccccc-CCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhc----------ccCCceE
Confidence            99996 56787655 48999999999999865 6666 5899999999999999998876421          1134699


Q ss_pred             EEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcccccccccccCCCCCCCCCCCCC
Q psy9480         314 EILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPSNDDSENQSSN  384 (395)
Q Consensus       314 el~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~~~~r~~~~p~~~~~~~~~~~  384 (395)
                      |+||+|||||++++|||||||++|++..      .+.++|++++++++..      ++||++...+.++++
T Consensus       316 El~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavd------p~f~~~~~~~~~~~~  374 (380)
T 3tig_A          316 QLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAIS------SVFPLNEENHKPTED  374 (380)
T ss_dssp             EEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTT------TTSCCCC--------
T ss_pred             EEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcc------cccCCccccCCCCCC
Confidence            9999999999999999999999999974      3788899999999976      789999888876654
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT} Back     alignment and structure
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.24
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.11
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.08
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.01
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.96
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 98.71
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 98.62
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 98.6
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 98.53
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 98.49
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 98.45
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 98.44
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 97.91
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 97.86
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 97.79
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 97.43
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 97.32
d2io8a3297 Glutathionylspermidine synthase, synthetase domain 90.08
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=7.4e-12  Score=111.60  Aligned_cols=89  Identities=15%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             cchHH-HHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc------
Q psy9480          93 ESKAF-LAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------  165 (395)
Q Consensus        93 ~~K~~-L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------  165 (395)
                      +.|-. ..+.+..+....+..+...+.++.-.  ..++.    ...+..+|+||..|+.|+||.++++.+++..      
T Consensus        10 ~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~~--~~~~~----~~~~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~~~~   83 (206)
T d1i7na2          10 CDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN--HREML----TLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVA   83 (206)
T ss_dssp             SSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS--GGGGS----SCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHhcccCCCccceeecccccc--hhHHh----hhcCCceEEecCCCCCCCCeEEEeecchhhhHHHHHh
Confidence            45633 33444444443333445555544332  22211    1235679999999999999999999887632      


Q ss_pred             -ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480         166 -IYTESVSQLYMSNLLLMDGFKFDLRVYVL  194 (395)
Q Consensus       166 -~~~~~IvQ~YI~~PlLi~grKFDlRvyvl  194 (395)
                       ....++||+||+.       ++|+|+.++
T Consensus        84 ~~~~~~~vqe~I~~-------~~dirv~vi  106 (206)
T d1i7na2          84 LTQTYATAEPFIDA-------KYDIRVQKI  106 (206)
T ss_dssp             HHTCCEEEEECCCE-------EEEEEEEEE
T ss_pred             hccCeEEEEEeecc-------cceEEEEEE
Confidence             2457999999962       479999987
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure