Psyllid ID: psy9487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF
Secondary Structure (PSIPRED)
ccccccccccccEEEEHHHHHHHHHHHHHHcccEEccccccccEEEcccccEEEEEEcccccccccccccccccccEEEEEEEEEEEccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEHHHHHHHHHHHHHHcccEEcccccHHHHHEcccccEEEEEEcccccccccccccccccccEEEEEEEEEHcccccHHHHHHHHHc
Coil and Loop (DISEMBL)
mafgmpmnnhgnYVVRLGHVVKWLGEQAEAmgveiypgipasevlyhgdgsvkgiatgdvgiakdgspkdtFARGMELHAKVTIFaegchghltkslssrf
Flexible Loop (DISEMBL)
mafgmpmnnhgNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFaegchghltkslssrf
Low Complexity Region (SEG)
MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF
Disordered region (IsUnstruct)
*********HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG***DTFARGMELHAKVTIFAEGCHGHL********
Disordered Region (DISOPRED)
*AFGMP*NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF
Disordered Region (DISEMBL)
MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF
Disordered Region (DISPRO)
*AFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q921G7	616	Electron transfer flavopr	yes	N/A	0.970	0.159	0.765	2e-41
Q2KIG0	617	Electron transfer flavopr	yes	N/A	0.970	0.158	0.765	3e-41
Q6UPE1	616	Electron transfer flavopr	yes	N/A	0.970	0.159	0.765	3e-41
P55931	617	Electron transfer flavopr	yes	N/A	0.970	0.158	0.765	4e-41
Q16134	617	Electron transfer flavopr	yes	N/A	0.970	0.158	0.765	4e-41
Q5RDD3	617	Electron transfer flavopr	yes	N/A	0.970	0.158	0.765	4e-41
Q11190	597	Electron transfer flavopr	yes	N/A	0.970	0.164	0.734	8e-38
Q54XM6	606	Electron transfer flavopr	yes	N/A	0.940	0.156	0.663	9e-33
P94132	570	Probable electron transfe	yes	N/A	0.940	0.166	0.621	4e-30
P87111	632	Probable electron transfe	yes	N/A	0.940	0.150	0.589	2e-27

>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI 
Sbjct: 162 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQ 221

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVT+FAEGCHGHL K L  +F
Sbjct: 222 KDGAPKTTFERGLELHAKVTVFAEGCHGHLAKQLYKKF 259

Accepts electrons from ETF and reduces ubiquinone.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 5EC: .EC: 5EC: .EC: 1

>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI 
Sbjct: 163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQ 222

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 223 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYRKF 260

Accepts electrons from ETF and reduces ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 85/98 (86%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI 
Sbjct: 162 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQ 221

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K    +F
Sbjct: 222 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQFYKKF 259

Accepts electrons from ETF and reduces ubiquinone.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI 
Sbjct: 163 GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ 222

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 223 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260

Accepts electrons from ETF and reduces ubiquinone.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI 
Sbjct: 163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQ 222

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 223 KDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260

Accepts electrons from ETF and reduces ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI 
Sbjct: 163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQ 222

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 223 KDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260

Accepts electrons from ETF and reduces ubiquinone.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1 SV=2

 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 72/98 (73%), Positives = 83/98 (84%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+P+ NHGNY+VRLG VV+WLGEQAEA GVE++P I ASEVLY+ DGSVKGIAT DVGI 
Sbjct: 145 GVPLANHGNYIVRLGKVVQWLGEQAEAAGVEVWPEIAASEVLYNEDGSVKGIATSDVGIG 204

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PKD FARGME HAK TIFAEGC GHL+K +  +F
Sbjct: 205 KDGAPKDGFARGMEFHAKCTIFAEGCRGHLSKQVLDKF 242

Accepts electrons from ETF and reduces ubiquinone.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 78/95 (82%)

Query: 7   MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
           M+N GNY++ LG+VV+WLGEQAE+MGVE+YP   ASEVLYH +G+V+GIAT D+GIAKDG
Sbjct: 152 MHNEGNYIISLGNVVRWLGEQAESMGVEVYPSFAASEVLYHDNGAVRGIATNDMGIAKDG 211

Query: 67  SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           S    F RGMEL+A++TIFAEGC G LTK L  +F
Sbjct: 212 SLTSNFTRGMELNARLTIFAEGCRGSLTKGLFEKF 246

Accepts electrons from ETF and reduces ubiquinone.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 74/95 (77%)

Query: 7   MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
           M+N GNYV+ LG+VV+WLG++AE + V I+PG  A+E+LYH DG+VKGI TGD+GI KDG
Sbjct: 111 MHNDGNYVISLGNVVRWLGQKAEELEVSIFPGFAAAEILYHADGTVKGIQTGDMGIGKDG 170

Query: 67  SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
            P   FA G ELHAK T+FAEGC GHL K L ++F
Sbjct: 171 EPTHNFAPGYELHAKYTLFAEGCRGHLGKRLINKF 205

Accepts electrons from ETF and reduces ubiquinone.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 65/95 (68%)

Query: 7   MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
           M NHGNYV+ L    +WL  +AE  GVEIYP   ASEVLY+ DGSV G+AT D G+   G
Sbjct: 186 MKNHGNYVMSLAEFTRWLAAKAEEYGVEIYPSFAASEVLYNKDGSVIGVATNDFGVDSKG 245

Query: 67  SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
            PKD F RGM  HA VT+FAEG HG L+KS+  RF
Sbjct: 246 LPKDNFERGMAFHAPVTLFAEGAHGSLSKSIIKRF 280

Accepts electrons from ETF and reduces ubiquinone.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
380026925	560	PREDICTED: electron transfer flavoprotei	0.970	0.175	0.846	1e-43
328720634	602	PREDICTED: electron transfer flavoprotei	0.970	0.162	0.816	5e-43
66540209	606	PREDICTED: electron transfer flavoprotei	0.970	0.161	0.846	1e-42
332018285	606	Electron transfer flavoprotein-ubiquinon	0.970	0.161	0.836	5e-42
332372654	601	unknown [Dendroctonus ponderosae]	0.970	0.163	0.836	1e-41
289743673	604	electron transfer flavoprotein ubiquinon	0.970	0.162	0.816	2e-41
195431423	604	GK15743 [Drosophila willistoni] gi|19415	0.970	0.162	0.816	2e-41
449673333	553	PREDICTED: electron transfer flavoprotei	0.970	0.177	0.795	2e-41
307186106	648	Electron transfer flavoprotein-ubiquinon	0.970	0.151	0.826	2e-41
432119963	1035	Electron transfer flavoprotein-ubiquinon	0.970	0.094	0.755	2e-41

>gi|380026925|ref|XP_003697189.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like, partial [Apis florea]

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/98 (84%), Positives = 87/98 (88%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           GMPM NHGNY+VRLGHVV WLGEQAEAMGVEIYPG  A+EVLYH DGSVKGIAT DVGIA
Sbjct: 152 GMPMYNHGNYIVRLGHVVTWLGEQAEAMGVEIYPGYAAAEVLYHEDGSVKGIATNDVGIA 211

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKDTF RGMELHAK TIFAEGCHGHLTK +S + 
Sbjct: 212 KDGSPKDTFERGMELHAKCTIFAEGCHGHLTKQISKKL 249

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720634|ref|XP_003247087.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328720636|ref|XP_003247088.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/98 (81%), Positives = 91/98 (92%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           GMPM+NHGNY+VRLGH+VKWLGEQAE++GVE+Y G PA+EVLYH DGSVKG+ATGDVGIA
Sbjct: 149 GMPMDNHGNYIVRLGHLVKWLGEQAESLGVEVYAGYPAAEVLYHDDGSVKGVATGDVGIA 208

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKD+F RGMELHAK+TIFAEGCHGHLTK L  +F
Sbjct: 209 KDGSPKDSFERGMELHAKITIFAEGCHGHLTKQLFKKF 246

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66540209|ref|XP_624722.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial isoform 1 [Apis mellifera]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 87/98 (88%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           GMPM NHGNY+VRLGHVV WLGEQAEAMGVEIYPG  A+EVLYH DGSVKGIAT DVGIA
Sbjct: 152 GMPMYNHGNYIVRLGHVVTWLGEQAEAMGVEIYPGYAAAEVLYHEDGSVKGIATNDVGIA 211

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKDTF RGMELHAK TIFAEGCHGHLTK +S + 
Sbjct: 212 KDGSPKDTFERGMELHAKCTIFAEGCHGHLTKQISKKL 249

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018285|gb|EGI58890.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Acromyrmex echinatior]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           GMPM NHGNY+VRLGHVV WLGEQAEA GVEIYPG  A+EVLYH DGSVKG+AT DVGIA
Sbjct: 152 GMPMYNHGNYIVRLGHVVTWLGEQAEAAGVEIYPGYAAAEVLYHEDGSVKGVATNDVGIA 211

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKDTF RGMELHAK TIFAEGCHGHLTK LS + 
Sbjct: 212 KDGSPKDTFERGMELHAKCTIFAEGCHGHLTKQLSKKL 249

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372654|gb|AEE61469.1| unknown [Dendroctonus ponderosae]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 87/98 (88%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G PM NHGNYVVRLGHVV+WLGEQAEA+GVEIYPG  ASEVLYH DGSVKGIAT DVGIA
Sbjct: 150 GTPMYNHGNYVVRLGHVVQWLGEQAEALGVEIYPGYAASEVLYHEDGSVKGIATNDVGIA 209

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKD F RGMELHAK TIFAEGCHGHL+K + +RF
Sbjct: 210 KDGSPKDNFERGMELHAKCTIFAEGCHGHLSKQIINRF 247

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743673|gb|ADD20584.1| electron transfer flavoprotein ubiquinone oxidoreductase [Glossina morsitans morsitans]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/98 (81%), Positives = 88/98 (89%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G PM+NHGNYVVRLGH+VKWLGEQAEA+GVEIYPG  A+EVL+H DGSVKG+AT DVGIA
Sbjct: 152 GWPMDNHGNYVVRLGHLVKWLGEQAEALGVEIYPGCAAAEVLFHKDGSVKGVATNDVGIA 211

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKDTFARGMELHAK TIFAEGC GHLTK +  +F
Sbjct: 212 KDGSPKDTFARGMELHAKTTIFAEGCRGHLTKQIMRQF 249

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431423|ref|XP_002063741.1| GK15743 [Drosophila willistoni] gi|194159826|gb|EDW74727.1| GK15743 [Drosophila willistoni]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/98 (81%), Positives = 89/98 (90%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G PM+NHGNYVVRLGH+VKWLG+QAEA+GVEIYPG  ASEVL+H DGSVKGIAT DVGIA
Sbjct: 152 GWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSVKGIATNDVGIA 211

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           K+G+PKDTFARGMELHAK TIFAEGC GHLTK +S +F
Sbjct: 212 KNGAPKDTFARGMELHAKTTIFAEGCRGHLTKQISQKF 249

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449673333|ref|XP_002156524.2| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [Hydra magnipapillata]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 90/98 (91%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PM NHGNY+VRLG+ V+WLGEQAE++GVEIYPGIPASE+LYH +GSVKGIAT DVGI 
Sbjct: 102 GLPMYNHGNYLVRLGNFVRWLGEQAESLGVEIYPGIPASEILYHENGSVKGIATSDVGIH 161

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKDTF RGMELHAK+TIFAEGCHGHLTK + ++F
Sbjct: 162 KDGSPKDTFERGMELHAKITIFAEGCHGHLTKQIINKF 199

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|307186106|gb|EFN71831.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Camponotus floridanus]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           GMPM NHGNY+VRLGHVV WLGEQAEA GVE+YPG  ASEVLY+ DGSVKG+AT DVGIA
Sbjct: 194 GMPMYNHGNYIVRLGHVVAWLGEQAEATGVEMYPGYAASEVLYYEDGSVKGVATNDVGIA 253

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDGSPKDTF RGMELHAK TIFAEGCHGHLTK LS + 
Sbjct: 254 KDGSPKDTFERGMELHAKCTIFAEGCHGHLTKQLSKKL 291

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432119963|gb|ELK38664.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Myotis davidii]

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/98 (75%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGS+KGIAT DVGI 
Sbjct: 581 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSIKGIATNDVGIQ 640

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 641 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 678

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0033465	604	Etf-QO "Electron transfer flav	0.970	0.162	0.806	9.6e-41
MGI|MGI:106100	616	Etfdh "electron transferring f	0.970	0.159	0.765	2.6e-40
UNIPROTKB|J3KND9	570	ETFDH "Electron transfer flavo	0.970	0.171	0.765	5.3e-40
UNIPROTKB|F1RW89	616	ETFDH "Electron transfer flavo	0.970	0.159	0.765	6.1e-40
RGD|735052	616	Etfdh "electron-transferring-f	0.970	0.159	0.765	6.1e-40
UNIPROTKB|Q16134	617	ETFDH "Electron transfer flavo	0.970	0.158	0.765	6.2e-40
UNIPROTKB|P55931	617	ETFDH "Electron transfer flavo	0.970	0.158	0.765	6.2e-40
UNIPROTKB|Q2KIG0	617	ETFDH "Electron transfer flavo	0.970	0.158	0.765	8.1e-40
ZFIN|ZDB-GENE-040912-168	617	etfdh "electron-transferring-f	0.970	0.158	0.775	8.1e-40
UNIPROTKB|F6V7P2	617	ETFDH "Uncharacterized protein	0.970	0.158	0.755	3.2e-39

FB|FBgn0033465 Etf-QO "Electron transfer flavoprotein-ubiquinone oxidoreductase" [Drosophila melanogaster (taxid:7227)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 79/98 (80%), Positives = 87/98 (88%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G PM+NHGNYVVRLGH+VKWLG+QAEA+GVEIYPG  ASEVL+H DGSVKGIAT DVGIA
Sbjct:   152 GWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSVKGIATNDVGIA 211

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             K G+PKDTFARGMELHAK TIFAEGC GHLTK +  +F
Sbjct:   212 KSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKF 249

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISS;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IMP

MGI|MGI:106100 Etfdh "electron transferring flavoprotein, dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI 
Sbjct:   162 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQ 221

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVT+FAEGCHGHL K L  +F
Sbjct:   222 KDGAPKTTFERGLELHAKVTVFAEGCHGHLAKQLYKKF 259

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009055 "electron carrier activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0017133 "mitochondrial electron transfer flavoprotein complex" evidence=TAS

GO:0022900 "electron transport chain" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=ISO

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|J3KND9 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI 
Sbjct:   116 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQ 175

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct:   176 KDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKF 213

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|F1RW89 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 6.1e-40, P = 6.1e-40
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI 
Sbjct:   162 GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ 221

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct:   222 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 259

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

RGD|735052 Etfdh "electron-transferring-flavoprotein dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 6.1e-40, P = 6.1e-40
 Identities = 75/98 (76%), Positives = 85/98 (86%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI 
Sbjct:   162 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQ 221

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVTIFAEGCHGHL K    +F
Sbjct:   222 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQFYKKF 259

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA;ISO;IDA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA;ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=ISO;IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;ISO

UNIPROTKB|Q16134 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 6.2e-40, P = 6.2e-40
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI 
Sbjct:   163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQ 222

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct:   223 KDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260

GO:0046872 "metal ion binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0022900 "electron transport chain" evidence=IDA

GO:0043783 "oxidoreductase activity, oxidizing metal ions with flavin as acceptor" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0048038 "quinone binding" evidence=IDA

GO:0048039 "ubiquinone binding" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IMP

UNIPROTKB|P55931 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 6.2e-40, P = 6.2e-40
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI 
Sbjct:   163 GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ 222

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct:   223 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 260

GO:0043783 "oxidoreductase activity, oxidizing metal ions with flavin as acceptor" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048039 "ubiquinone binding" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0044429 "mitochondrial part" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0022900 "electron transport chain" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2KIG0 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 425 (154.7 bits), Expect = 8.1e-40, P = 8.1e-40
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI 
Sbjct:   163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQ 222

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct:   223 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYRKF 260

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040912-168 etfdh "electron-transferring-flavoprotein dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 8.1e-40, P = 8.1e-40
 Identities = 76/98 (77%), Positives = 85/98 (86%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH V+WLGEQAE +GVE+YPG  A+EVL+H DGSVKGIAT DVGIA
Sbjct:   163 GLPMNNHGNYLVRLGHFVRWLGEQAEELGVELYPGYAAAEVLFHEDGSVKGIATNDVGIA 222

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDGSPKD F RGMELHAKVT+F EGCHGHL K L  +F
Sbjct:   223 KDGSPKDVFERGMELHAKVTMFGEGCHGHLAKQLYKQF 260

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IMP

UNIPROTKB|F6V7P2 ETFDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 420 (152.9 bits), Expect = 3.2e-39, P = 3.2e-39
 Identities = 74/98 (75%), Positives = 85/98 (86%)

Query:     4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
             G+PMNNHGNY+VRLGH+V W+GEQAEA+GVEIYPG  A+EVL+H D SVKGIAT DVGI 
Sbjct:   163 GLPMNNHGNYIVRLGHLVSWMGEQAEALGVEIYPGYAAAEVLFHEDSSVKGIATNDVGIQ 222

Query:    64 KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             KDG+PK TF RG+ELHAKVT+FAEGCHGHL K L  +F
Sbjct:   223 KDGAPKTTFERGLELHAKVTVFAEGCHGHLAKQLYKKF 260

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P94132	ETFD_ACIAD	1, ., 5, ., 5, ., 1	0.6210	0.9405	0.1666	yes	N/A
Q16134	ETFD_HUMAN	1, ., 5, ., 5, ., 1	0.7653	0.9702	0.1588	yes	N/A
Q54XM6	ETFD_DICDI	1, ., 5, ., 5, ., 1	0.6631	0.9405	0.1567	yes	N/A
Q2KIG0	ETFD_BOVIN	1, ., 5, ., 5, ., 1	0.7653	0.9702	0.1588	yes	N/A
Q5RDD3	ETFD_PONAB	1, ., 5, ., 5, ., 1	0.7653	0.9702	0.1588	yes	N/A
Q08822	ETFD_YEAST	1, ., 5, ., 5, ., 1	0.5157	0.9405	0.1505	yes	N/A
P55931	ETFD_PIG	1, ., 5, ., 5, ., 1	0.7653	0.9702	0.1588	yes	N/A
Q11190	ETFD_CAEEL	1, ., 5, ., 5, ., 1	0.7346	0.9702	0.1641	yes	N/A
P87111	ETFD_SCHPO	1, ., 5, ., 5, ., 1	0.5894	0.9405	0.1503	yes	N/A
Q921G7	ETFD_MOUSE	1, ., 5, ., 5, ., 1	0.7653	0.9702	0.1590	yes	N/A
Q9HZP5	ETFD_PSEAE	1, ., 5, ., 5, ., 1	0.5104	0.9405	0.1724	yes	N/A
Q6UPE1	ETFD_RAT	1, ., 5, ., 5, ., 1	0.7653	0.9702	0.1590	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	3e-14
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	0.004

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 16/97 (16%)

Query: 1   MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV 60
               + +     Y+V      KWL E+AE  G E+YPG   + V+   DG V G+  GD 
Sbjct: 78  EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD- 136

Query: 61  GIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
                           E+ AKV I A+G +  L + L
Sbjct: 137 ---------------DEVRAKVVIDADGVNSALARKL 158

Length = 396

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 19/90 (21%)

Query: 9   NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGS 67
           +  +Y V       WL EQAE  G ++  GI    ++   DG V G+ A GDV       
Sbjct: 99  SQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDV------- 150

Query: 68  PKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
                     + AK  I A+G +  L + L
Sbjct: 151 ----------IEAKTVILADGVNSILAEKL 170

Length = 428

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG2415|consensus	621		99.88
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.43
PRK10015	429	oxidoreductase; Provisional	99.26
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.21
PRK10157	428	putative oxidoreductase FixC; Provisional	99.21
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.16
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.13
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.88
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.82
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.81
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.77
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.76
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.74
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.73
PRK08013	400	oxidoreductase; Provisional	98.72
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.72
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.71
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.69
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.66
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.66
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.64
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.62
PRK06185	407	hypothetical protein; Provisional	98.6
PRK07045	388	putative monooxygenase; Reviewed	98.59
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.57
PLN02985	514	squalene monooxygenase	98.57
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.53
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.52
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.52
PRK07538	413	hypothetical protein; Provisional	98.52
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.51
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.49
PRK11445	351	putative oxidoreductase; Provisional	98.47
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.46
PRK08244	493	hypothetical protein; Provisional	98.46
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.46
PRK08163	396	salicylate hydroxylase; Provisional	98.44
PRK07121	492	hypothetical protein; Validated	98.42
PRK07588	391	hypothetical protein; Provisional	98.42
PRK06847	375	hypothetical protein; Provisional	98.41
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.41
PRK09126	392	hypothetical protein; Provisional	98.4
PRK06184	502	hypothetical protein; Provisional	98.4
PRK07190	487	hypothetical protein; Provisional	98.4
PRK08274	466	tricarballylate dehydrogenase; Validated	98.37
PLN02661	357	Putative thiazole synthesis	98.37
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.36
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.36
PRK12839	572	hypothetical protein; Provisional	98.34
PRK06126	545	hypothetical protein; Provisional	98.33
PRK06996	398	hypothetical protein; Provisional	98.32
PRK06834	488	hypothetical protein; Provisional	98.32
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.31
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.3
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.3
PRK05868	372	hypothetical protein; Validated	98.3
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.3
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.28
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.28
PRK06475	400	salicylate hydroxylase; Provisional	98.27
PRK06753	373	hypothetical protein; Provisional	98.25
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.24
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.24
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.24
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.24
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.23
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.22
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.22
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.21
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.19
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.18
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.18
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.17
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.17
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.16
PRK08275	554	putative oxidoreductase; Provisional	98.16
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.15
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.15
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.14
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.13
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.13
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.13
PLN02697	529	lycopene epsilon cyclase	98.12
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.11
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.1
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.1
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.08
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.07
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.07
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.07
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.06
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.05
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.02
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.02
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.0
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.99
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.99
PRK07804	541	L-aspartate oxidase; Provisional	97.99
PRK08294	634	phenol 2-monooxygenase; Provisional	97.98
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.98
PLN02463	447	lycopene beta cyclase	97.98
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.97
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.96
PTZ00367	567	squalene epoxidase; Provisional	97.95
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.93
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.92
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.92
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.9
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.89
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.88
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.87
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.87
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.87
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.84
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.84
PRK06175	433	L-aspartate oxidase; Provisional	97.83
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.83
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.82
PRK07236	386	hypothetical protein; Provisional	97.8
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.79
PRK08401	466	L-aspartate oxidase; Provisional	97.79
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.79
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.78
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.78
PRK08071	510	L-aspartate oxidase; Provisional	97.78
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.75
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.74
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.73
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.71
PRK07512	513	L-aspartate oxidase; Provisional	97.71
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.69
PLN02815	594	L-aspartate oxidase	97.64
COG0579	429	Predicted dehydrogenase [General function predicti	97.64
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.63
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.63
PRK09077	536	L-aspartate oxidase; Provisional	97.62
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.6
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.6
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.59
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.57
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.54
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.52
KOG2844|consensus	856		97.52
KOG2820|consensus	399		97.49
PRK07395	553	L-aspartate oxidase; Provisional	97.49
COG2081	408	Predicted flavoproteins [General function predicti	97.47
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.44
PRK05257	494	malate:quinone oxidoreductase; Validated	97.41
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.37
PLN02612	567	phytoene desaturase	97.37
KOG4254|consensus	561		97.35
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.35
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.35
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.33
KOG1298|consensus	509		97.33
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.25
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.15
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.1
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.09
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.08
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.97
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.83
PRK07233	434	hypothetical protein; Provisional	96.8
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.75
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.74
PRK02106	560	choline dehydrogenase; Validated	96.63
KOG0042|consensus	680		96.47
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.45
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.41
PRK07208	479	hypothetical protein; Provisional	96.4
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.39
KOG1336|consensus	478		96.39
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.37
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.34
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.34
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.3
PLN02487	569	zeta-carotene desaturase	96.28
KOG2852|consensus	380		96.27
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	96.24
PRK06116	450	glutathione reductase; Validated	96.24
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.16
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.14
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.07
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.05
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.97
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.89
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.83
KOG2404|consensus	477		95.8
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.79
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.79
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.78
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.66
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.62
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	95.62
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.58
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.54
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.53
PRK12831	464	putative oxidoreductase; Provisional	95.49
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.29
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	95.24
KOG1346|consensus	659		95.2
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.16
PRK14727	479	putative mercuric reductase; Provisional	95.15
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.13
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.11
KOG0404|consensus	322		95.11
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.1
PRK14694	468	putative mercuric reductase; Provisional	95.09
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.02
PLN02785	587	Protein HOTHEAD	95.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.92
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.85
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	94.83
PLN02507	499	glutathione reductase	94.8
PRK06370	463	mercuric reductase; Validated	94.78
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.78
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.78
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	94.71
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.68
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.65
PRK13748	561	putative mercuric reductase; Provisional	94.51
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.38
TIGR02053	463	MerA mercuric reductase. This model represents the	94.35
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.33
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.31
PRK10262	321	thioredoxin reductase; Provisional	94.24
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	94.23
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.17
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.16
KOG2853|consensus	509		93.96
PRK09897	534	hypothetical protein; Provisional	93.9
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.61
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	93.59
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	93.52
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	93.49
PRK13984	604	putative oxidoreductase; Provisional	93.35
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	93.34
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.31
PTZ00052	499	thioredoxin reductase; Provisional	93.29
KOG2614|consensus	420		93.25
PRK12416	463	protoporphyrinogen oxidase; Provisional	93.04
PTZ00058	561	glutathione reductase; Provisional	93.03
PLN02676	487	polyamine oxidase	92.96
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	92.96
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	92.94
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	92.9
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.84
PRK07845	466	flavoprotein disulfide reductase; Reviewed	92.75
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	92.47
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.45
KOG2311|consensus	679		92.24
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.05
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	91.96
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	91.85
PLN02546	558	glutathione reductase	91.75
PRK13512	438	coenzyme A disulfide reductase; Provisional	91.58
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.56
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	91.55
PRK09564	444	coenzyme A disulfide reductase; Reviewed	91.43
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	91.19
PRK11883	451	protoporphyrinogen oxidase; Reviewed	91.1
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	91.1
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	91.03
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	91.01
PRK12779	944	putative bifunctional glutamate synthase subunit b	90.65
PTZ00153	659	lipoamide dehydrogenase; Provisional	90.65
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	90.64
PRK07846	451	mycothione reductase; Reviewed	90.56
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	90.38
PRK12770	352	putative glutamate synthase subunit beta; Provisio	90.29
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	90.17
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.17
COG3573	552	Predicted oxidoreductase [General function predict	90.09
PLN02268	435	probable polyamine oxidase	90.01
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	90.01
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	89.92
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	89.74
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	89.66
PRK12814	652	putative NADPH-dependent glutamate synthase small	89.52
PRK10262	321	thioredoxin reductase; Provisional	88.87
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	88.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	87.98
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	87.81
PRK13512	438	coenzyme A disulfide reductase; Provisional	87.62
KOG1335|consensus	506		87.49
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	86.92
PRK06116	450	glutathione reductase; Validated	86.85
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	86.55
PLN02576	496	protoporphyrinogen oxidase	86.27
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	86.2
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	86.16
PLN02507	499	glutathione reductase	85.94
PLN02568	539	polyamine oxidase	85.57
PRK06370	463	mercuric reductase; Validated	85.5
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	85.44
KOG1399|consensus	448		85.36
PLN02546	558	glutathione reductase	85.06
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	84.62
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	83.12
KOG3855|consensus	481		82.12
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	81.16
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	80.51

>KOG2415|consensus

Probab=99.88  E-value=2.1e-22  Score=160.79  Aligned_cols=97  Identities=74%  Similarity=1.276  Sum_probs=95.4

Q ss_pred             CCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487           5 MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI   84 (101)
Q Consensus         5 ~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI   84 (101)
                      .||+|+|.|+++..++.+||.++|+++||||+++.++.++++++||.|+||-|+|.|+.++|.|+.+|++|++++|+.+|
T Consensus       170 ~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~Ti  249 (621)
T KOG2415|consen  170 SPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTI  249 (621)
T ss_pred             cccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCchhhHHHhhhC
Q psy9487          85 FAEGCHGHLTKSLSSRF  101 (101)
Q Consensus        85 ~A~G~~s~l~~~l~~~~  101 (101)
                      .|+|+++.|++++++||
T Consensus       250 fAEGc~G~Lskqi~kkf  266 (621)
T KOG2415|consen  250 FAEGCHGSLSKQIIKKF  266 (621)
T ss_pred             EeccccchhHHHHHHHh
Confidence            99999999999999987

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.43  E-value=7.9e-13  Score=103.20  Aligned_cols=74  Identities=39%  Similarity=0.661  Sum_probs=64.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..+|+++|..||+||+++|+++|+++++++.++++..++++.++++...+                .+++|++||+|||+
T Consensus        87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~a~~vI~AdG~  150 (396)
T COG0644          87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD----------------DEVRAKVVIDADGV  150 (396)
T ss_pred             CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC----------------EEEEcCEEEECCCc
Confidence            34999999999999999999999999999999999997445555555432                69999999999999


Q ss_pred             CchhhHHHhh
Q psy9487          90 HGHLTKSLSS   99 (101)
Q Consensus        90 ~s~l~~~l~~   99 (101)
                      +|.+++++..
T Consensus       151 ~s~l~~~lg~  160 (396)
T COG0644         151 NSALARKLGL  160 (396)
T ss_pred             chHHHHHhCC
Confidence            9999998754

>PRK10015 oxidoreductase; Provisional

Probab=99.26  E-value=3.5e-11  Score=95.28  Aligned_cols=71  Identities=35%  Similarity=0.602  Sum_probs=63.2

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .++|++.|..||+||.++|++.|++++.+++|+++..+ ++++.+|.+.+                .+++|++||+|+|+
T Consensus       100 ~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~----------------~~i~A~~VI~AdG~  162 (429)
T PRK10015        100 HASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGD----------------DILEANVVILADGV  162 (429)
T ss_pred             cCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCC----------------eEEECCEEEEccCc
Confidence            45899999999999999999999999999999999875 67888887642                57999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+++++
T Consensus       163 ~s~v~~~l  170 (429)
T PRK10015        163 NSMLGRSL  170 (429)
T ss_pred             chhhhccc
Confidence            99998875

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.21  E-value=2e-10  Score=85.98  Aligned_cols=87  Identities=21%  Similarity=0.316  Sum_probs=69.5

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+.|++++..|.++|.++|++.|++++.++.|.++..++++++.||.++......++.+.    ....|+|+.||+|+|.
T Consensus        96 ~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~----~~~~i~Ak~VI~ATG~  171 (257)
T PRK04176         96 DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV----DPLTIEAKAVVDATGH  171 (257)
T ss_pred             CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCC----CcEEEEcCEEEEEeCC
Confidence            457889999999999999999999999999999999864459999988643221222110    0257999999999999


Q ss_pred             CchhhHHHhhh
Q psy9487          90 HGHLTKSLSSR  100 (101)
Q Consensus        90 ~s~l~~~l~~~  100 (101)
                      ++.+.+.|.++
T Consensus       172 ~a~v~~~l~~~  182 (257)
T PRK04176        172 DAEVVSVLARK  182 (257)
T ss_pred             CcHHHHHHHHH
Confidence            99999988765

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.21  E-value=1.1e-10  Score=92.16  Aligned_cols=70  Identities=33%  Similarity=0.549  Sum_probs=62.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+|.+.|..||+||.++|++.|++|+++++|+++..+ +++++++.+.                +.+++|++||+|+|++
T Consensus       101 ~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~----------------g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        101 RSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEAD----------------GDVIEAKTVILADGVN  163 (428)
T ss_pred             CceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcC----------------CcEEECCEEEEEeCCC
Confidence            4799999999999999999999999999999999885 6777777643                3579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+++++
T Consensus       164 s~l~~~l  170 (428)
T PRK10157        164 SILAEKL  170 (428)
T ss_pred             HHHHHHc
Confidence            9998875

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.16  E-value=8.5e-11  Score=94.07  Aligned_cols=71  Identities=25%  Similarity=0.368  Sum_probs=59.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      -+|.++|..||++|.++|++.||++++++ |.++..+++|.+++|++.+               |.+|.||+||+|+|..
T Consensus       147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~  210 (454)
T PF04820_consen  147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR  210 (454)
T ss_dssp             -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred             eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence            38999999999999999999999999985 8888887788999999976               6789999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      +.|.+++
T Consensus       211 s~L~~~~  217 (454)
T PF04820_consen  211 SLLARKA  217 (454)
T ss_dssp             -CCCCCC
T ss_pred             chhhHhh
Confidence            9998773

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.13  E-value=9.8e-10  Score=82.25  Aligned_cols=94  Identities=18%  Similarity=0.323  Sum_probs=72.0

Q ss_pred             CCCCCCCCC--cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487           3 FGMPMNNHG--NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELH   79 (101)
Q Consensus         3 ~~~~~~~~~--~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~   79 (101)
                      +|.++..++  .++.++..+.++|.++|+++|++++.++.|.+++.++++ +|.||.++.......|.+.    ....++
T Consensus        83 ~gi~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~----d~~~i~  158 (254)
T TIGR00292        83 FGIRYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHV----DPLTQR  158 (254)
T ss_pred             CCCCeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCC----CCEEEE
Confidence            455665543  456699999999999999999999999999999986332 7999998643222222110    026899


Q ss_pred             ccEEEEeecCCchhhHHHhhh
Q psy9487          80 AKVTIFAEGCHGHLTKSLSSR  100 (101)
Q Consensus        80 A~~VI~A~G~~s~l~~~l~~~  100 (101)
                      |+.||+|+|..+.+.+.|.++
T Consensus       159 Ak~VVdATG~~a~v~~~l~~~  179 (254)
T TIGR00292       159 SRVVVDATGHDAEIVAVCAKK  179 (254)
T ss_pred             cCEEEEeecCCchHHHHHHHH
Confidence            999999999999999888776

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.88  E-value=1.3e-08  Score=75.48  Aligned_cols=77  Identities=25%  Similarity=0.321  Sum_probs=59.6

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ...+++.|..|+++|.+.|++.|++|+.++.+.++..+ ++.+..+....    .+|+       ..+++||+||.|||+
T Consensus       103 ~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~----~~g~-------~~~i~adlvVgADG~  170 (356)
T PF01494_consen  103 PYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDG----EDGE-------EETIEADLVVGADGA  170 (356)
T ss_dssp             SCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEET----CTCE-------EEEEEESEEEE-SGT
T ss_pred             CcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccc----cCCc-------eeEEEEeeeecccCc
Confidence            34788999999999999999999999999999999886 44444333221    2232       258999999999999


Q ss_pred             CchhhHHHh
Q psy9487          90 HGHLTKSLS   98 (101)
Q Consensus        90 ~s~l~~~l~   98 (101)
                      +|.+++++.
T Consensus       171 ~S~vR~~l~  179 (356)
T PF01494_consen  171 HSKVRKQLG  179 (356)
T ss_dssp             T-HHHHHTT
T ss_pred             ccchhhhcc
Confidence            999998875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.82  E-value=3.2e-08  Score=73.42  Aligned_cols=67  Identities=25%  Similarity=0.370  Sum_probs=57.3

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..+..++-..|.++|.+.+++.|++|+++++|++|..+ ++++.||++.+                .+++|+.||+|+|+
T Consensus       139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~----------------g~i~ad~vV~a~G~  201 (358)
T PF01266_consen  139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD----------------GEIRADRVVLAAGA  201 (358)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT----------------EEEEECEEEE--GG
T ss_pred             cccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc----------------cccccceeEecccc
Confidence            34677799999999999999999999999999999996 78999999986                45999999999999


Q ss_pred             Cchh
Q psy9487          90 HGHL   93 (101)
Q Consensus        90 ~s~l   93 (101)
                      |+..
T Consensus       202 ~s~~  205 (358)
T PF01266_consen  202 WSPQ  205 (358)
T ss_dssp             GHHH
T ss_pred             ccee
Confidence            8765

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.81  E-value=3.7e-08  Score=71.89  Aligned_cols=72  Identities=28%  Similarity=0.355  Sum_probs=58.8

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ...++++|..|+++|.+++++.|++++.+++|+++..+ ++.+. +.+.+      +        +.+++|+.||+|+|.
T Consensus        83 ~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~-~~~~~------~--------~~~~~a~~vv~a~G~  146 (295)
T TIGR02032        83 ELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVV-VIVRG------G--------EGTVTAKIVIGADGS  146 (295)
T ss_pred             CcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEE-EEEcC------c--------cEEEEeCEEEECCCc
Confidence            34788999999999999999999999999999999886 44432 33322      0        367999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+.+++
T Consensus       147 ~s~~~~~~  154 (295)
T TIGR02032       147 RSIVAKKL  154 (295)
T ss_pred             chHHHHhc
Confidence            99988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.77  E-value=5.1e-08  Score=75.61  Aligned_cols=73  Identities=23%  Similarity=0.263  Sum_probs=55.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccC-CCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK-DGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~-~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +++|..||++|.++|.+.|++++.+ .|+++..+ ++.+ .|.+.+ +..+ +++       ..+++|++||+|||++|.
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~~-~v~~~~-~~~~~~~~-------~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDGV-TLTYRT-PKKGAGGE-------KGSVEADVVIGADGANSP  156 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCeE-EEEEEe-ccccCCCc-------ceEEEeCEEEECCCCCcH
Confidence            5999999999999999999999876 58998775 4433 455542 1000 111       257999999999999999


Q ss_pred             hhHHH
Q psy9487          93 LTKSL   97 (101)
Q Consensus        93 l~~~l   97 (101)
                      +++++
T Consensus       157 v~r~l  161 (388)
T TIGR02023       157 VAKEL  161 (388)
T ss_pred             HHHHc
Confidence            98876

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.76  E-value=6.8e-08  Score=75.73  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEecccc-ccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVG-IAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g-~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ++++|..||++|+++|++.|++++.++ +.++... +.+...+|+..... ....|+       ..+++|++||+|||++
T Consensus        88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~i~a~~VIgADG~~  159 (398)
T TIGR02028        88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT-------RCTLEVDAVIGADGAN  159 (398)
T ss_pred             eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC-------ccEEEeCEEEECCCcc
Confidence            369999999999999999999999885 7676542 12345556543210 001122       2579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+++++
T Consensus       160 S~v~~~~  166 (398)
T TIGR02028       160 SRVAKEI  166 (398)
T ss_pred             hHHHHHh
Confidence            9998876

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.74  E-value=8e-08  Score=73.52  Aligned_cols=69  Identities=23%  Similarity=0.386  Sum_probs=58.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|+++|..|++.|.+++.+. |++++.+++|+++..+ ++.+ .|.+.+               |.++.|++||+|+|.+
T Consensus        99 ~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~ad~vV~AdG~~  161 (382)
T TIGR01984        99 GYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYV-RVTLDN---------------GQQLRAKLLIAADGAN  161 (382)
T ss_pred             EEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeE-EEEECC---------------CCEEEeeEEEEecCCC
Confidence            69999999999999999984 9999999999999875 3443 355533               4579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+++
T Consensus       162 S~vr~~l  168 (382)
T TIGR01984       162 SKVRELL  168 (382)
T ss_pred             hHHHHHc
Confidence            9988775

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.73  E-value=8.5e-08  Score=76.81  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccc-cCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~-~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +++|..||++|+++|++.|++++.+ .++++..+++ +..+.|.+.+... ..+|+       ..+++|++||.|||++|
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~v~a~~VIgADG~~S  199 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT-------PKTLEVDAVIGADGANS  199 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC-------ccEEEeCEEEEcCCcch
Confidence            4999999999999999999999876 4777765321 2233455432100 01122       25799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+++++
T Consensus       200 ~vrr~l  205 (450)
T PLN00093        200 RVAKDI  205 (450)
T ss_pred             HHHHHh
Confidence            999886

>PRK08013 oxidoreductase; Provisional

Probab=98.72  E-value=8.5e-08  Score=74.66  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|++.|..|+++|.+++++. |++++.+++++++..+ ++.+ .|...+               |.+++|++||.|||++
T Consensus       105 ~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~i~a~lvVgADG~~  167 (400)
T PRK08013        105 GHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEA-FLTLKD---------------GSMLTARLVVGADGAN  167 (400)
T ss_pred             EEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeE-EEEEcC---------------CCEEEeeEEEEeCCCC
Confidence            68999999999999999986 8999999999999875 3332 344433               4679999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+++++.
T Consensus       168 S~vR~~~~  175 (400)
T PRK08013        168 SWLRNKAD  175 (400)
T ss_pred             cHHHHHcC
Confidence            99988763

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.72  E-value=9.5e-08  Score=73.79  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=57.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|++.|..|++.|.+++++.+ ++++.++.++++..+ ++.+ .|.+.+                .+++|++||.|||.+
T Consensus        98 g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~----------------~~~~adlvIgADG~~  159 (374)
T PRK06617         98 GYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDD----------------KQIKCNLLIICDGAN  159 (374)
T ss_pred             EEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcC----------------CEEeeCEEEEeCCCC
Confidence            799999999999999999986 999999999999875 4443 355533                379999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+++.+
T Consensus       160 S~vR~~l  166 (374)
T PRK06617        160 SKVRSHY  166 (374)
T ss_pred             chhHHhc
Confidence            9998765

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.71  E-value=1.3e-07  Score=71.89  Aligned_cols=71  Identities=21%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+|+++|..|+++|.+.+++.| ++++.+++|+++..+ ++.+ .|.+.+               |..+.+++||.|+|.
T Consensus        99 ~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~~~~vi~adG~  161 (385)
T TIGR01988        99 LGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDD---------------GQQLRARLLVGADGA  161 (385)
T ss_pred             cEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECC---------------CCEEEeeEEEEeCCC
Confidence            4799999999999999999999 999999999999875 4444 355543               457999999999999


Q ss_pred             CchhhHHHh
Q psy9487          90 HGHLTKSLS   98 (101)
Q Consensus        90 ~s~l~~~l~   98 (101)
                      +|.+.+++.
T Consensus       162 ~S~vr~~l~  170 (385)
T TIGR01988       162 NSKVRQLAG  170 (385)
T ss_pred             CCHHHHHcC
Confidence            999988763

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.69  E-value=1.5e-07  Score=72.62  Aligned_cols=69  Identities=22%  Similarity=0.265  Sum_probs=58.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +|+++|..|.+.|.+++++.|++++.+++|+++..+ ++.+. |.+.+               |.++.|+.||+|+|.+|
T Consensus       107 ~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        107 GWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDD---------------GRRLEAALAIAADGAAS  169 (392)
T ss_pred             EEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECC---------------CCEEEeCEEEEecCCCc
Confidence            799999999999999999999999999999999875 44443 66543               45799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+.+
T Consensus       170 ~vr~~~  175 (392)
T PRK08773        170 TLRELA  175 (392)
T ss_pred             hHHHhh
Confidence            887765

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.66  E-value=1.8e-07  Score=72.02  Aligned_cols=70  Identities=21%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+|+++|..|++.|.+++++. |++++.++.++++..+ ++. +.|.+.+               +.+++|++||+|||+
T Consensus       105 ~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG~  167 (391)
T PRK08020        105 LGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLAD---------------GEEIQAKLVIGADGA  167 (391)
T ss_pred             cEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECC---------------CCEEEeCEEEEeCCC
Confidence            378999999999999999887 9999999999999764 333 3455543               457999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+++.+
T Consensus       168 ~S~vR~~~  175 (391)
T PRK08020        168 NSQVRQMA  175 (391)
T ss_pred             CchhHHHc
Confidence            99997765

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.66  E-value=2.3e-07  Score=71.48  Aligned_cols=69  Identities=22%  Similarity=0.355  Sum_probs=58.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +++++|..|++.|.+++++.|++++.+++|+++..+ ++.+ .|.+.+               |..+.+++||.|+|.+|
T Consensus       105 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        105 AHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSD---------------GSVLEARLLVAADGARS  167 (403)
T ss_pred             EEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEEcCCCCh
Confidence            578999999999999999999999999999999874 4443 355543               45799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+++
T Consensus       168 ~vr~~~  173 (403)
T PRK07333        168 KLRELA  173 (403)
T ss_pred             HHHHHc
Confidence            987765

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.64  E-value=2.2e-07  Score=72.02  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +|++.|..+.+.|.+++++.|++++.++++.++..+ ++.+ .|.+.+               |.++.|++||.|||++|
T Consensus       106 g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        106 GHIVENRVVQDALLERLHDSDIGLLANARLEQMRRS-GDDW-LLTLAD---------------GRQLRAPLVVAADGANS  168 (405)
T ss_pred             EEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeE-EEEECC---------------CCEEEeCEEEEecCCCc
Confidence            689999999999999999999999999999999875 3433 355543               45799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+.+
T Consensus       169 ~vR~~l  174 (405)
T PRK05714        169 AVRRLA  174 (405)
T ss_pred             hhHHhc
Confidence            998765

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.62  E-value=1.1e-07  Score=70.75  Aligned_cols=93  Identities=23%  Similarity=0.348  Sum_probs=65.3

Q ss_pred             CCCCCCC--CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc
Q psy9487           4 GMPMNNH--GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK   81 (101)
Q Consensus         4 ~~~~~~~--~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~   81 (101)
                      |.+.+++  +-|+.+-..+..+|+.+|.++|++|+..+.|.++.+.+|+||.||.++-.-....|-+    .+=..|+|+
T Consensus        80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glH----vDPl~i~ak  155 (230)
T PF01946_consen   80 GIPYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLH----VDPLTIRAK  155 (230)
T ss_dssp             T---EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-----B-EEEEES
T ss_pred             CceeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcC----CCcceEEEe
Confidence            3444443  4677799999999999999999999999999999986458999999884333333322    111579999


Q ss_pred             EEEEeecCCchhhHHHhhh
Q psy9487          82 VTIFAEGCHGHLTKSLSSR  100 (101)
Q Consensus        82 ~VI~A~G~~s~l~~~l~~~  100 (101)
                      +||+|+|-.+.+.+.+.+|
T Consensus       156 ~ViDaTGHda~v~~~~~kk  174 (230)
T PF01946_consen  156 VVIDATGHDAEVVRVLAKK  174 (230)
T ss_dssp             EEEE---SSSSSTSHHHHH
T ss_pred             EEEeCCCCchHHHHHHHHH
Confidence            9999999999887766554

>PRK06185 hypothetical protein; Provisional

Probab=98.60  E-value=4.1e-07  Score=70.36  Aligned_cols=73  Identities=21%  Similarity=0.323  Sum_probs=60.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ++++.+..+.++|.+++++. |++++.+++++++..+ ++++.+|.+..    .+|+        .+++|++||+|||.+
T Consensus       102 ~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~----~~g~--------~~i~a~~vI~AdG~~  168 (407)
T PRK06185        102 IAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART----PDGP--------GEIRADLVVGADGRH  168 (407)
T ss_pred             EEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc----CCCc--------EEEEeCEEEECCCCc
Confidence            67899999999999999875 8999999999999986 67887777653    1111        479999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+++
T Consensus       169 S~vr~~~  175 (407)
T PRK06185        169 SRVRALA  175 (407)
T ss_pred             hHHHHHc
Confidence            9987765

>PRK07045 putative monooxygenase; Reviewed

Probab=98.59  E-value=3.7e-07  Score=70.43  Aligned_cols=70  Identities=14%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+.|..+.++|.+++.+ .|++++.+++++++..++++.++.|...+               |.++.+++||.|||.+|
T Consensus       101 ~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        101 ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD---------------GERVAPTVLVGADGARS  165 (388)
T ss_pred             EEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC---------------CCEEECCEEEECCCCCh
Confidence            457899999999999864 68999999999999886556666777654               46899999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+++++
T Consensus       166 ~vR~~~  171 (388)
T PRK07045        166 MIRDDV  171 (388)
T ss_pred             HHHHHh
Confidence            998875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.57  E-value=4.3e-07  Score=70.64  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=62.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEec-cccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATG-DVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~-~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      ..++++.+..|.+.|.+++.+.+ ++++.+++|+.+..+ ++.+. |... +               |.+++|++||.||
T Consensus        96 ~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~d---------------G~~~~a~llVgAD  158 (387)
T COG0654          96 ALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFD---------------GETLDADLLVGAD  158 (387)
T ss_pred             cceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCC---------------CcEEecCEEEECC
Confidence            34899999999999999999988 999999999999986 55666 6665 4               5689999999999


Q ss_pred             cCCchhhHHHh
Q psy9487          88 GCHGHLTKSLS   98 (101)
Q Consensus        88 G~~s~l~~~l~   98 (101)
                      |.+|.+.+.+-
T Consensus       159 G~~S~vR~~~~  169 (387)
T COG0654         159 GANSAVRRAAG  169 (387)
T ss_pred             CCchHHHHhcC
Confidence            99999987653

>PLN02985 squalene monooxygenase

Probab=98.57  E-value=4.3e-07  Score=73.93  Aligned_cols=74  Identities=23%  Similarity=0.447  Sum_probs=60.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +++++|..|.+.|.++|++. ||+++.+ ++++++.+ ++.+.||+...    .+|+.       .+++|++||+|||.+
T Consensus       141 g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~----~dG~~-------~~~~AdLVVgADG~~  207 (514)
T PLN02985        141 ARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKN----SAGEE-------TTALAPLTVVCDGCY  207 (514)
T ss_pred             eeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEc----CCCCE-------EEEECCEEEECCCCc
Confidence            68999999999999999887 6999876 57787764 67888888753    23332       468899999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+++++.
T Consensus       208 S~vR~~l~  215 (514)
T PLN02985        208 SNLRRSLN  215 (514)
T ss_pred             hHHHHHhc
Confidence            99988774

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.53  E-value=7.9e-07  Score=68.17  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..|.++|..|++.|.++|++.| ++++ +++++++..+ ++.+ .|.+.+               |.+++|+.||.|+|.
T Consensus       104 ~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~a~~vI~adG~  165 (388)
T PRK07608        104 LAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLAD---------------GQVLRADLVVGADGA  165 (388)
T ss_pred             CEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECC---------------CCEEEeeEEEEeCCC
Confidence            3688999999999999999998 9999 8999999764 4443 466654               457999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+.+.+
T Consensus       166 ~S~vr~~~  173 (388)
T PRK07608        166 HSWVRSQA  173 (388)
T ss_pred             CchHHHhc
Confidence            99987765

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.52  E-value=4.5e-07  Score=67.69  Aligned_cols=64  Identities=22%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      -.++-..+.+.|++.|++.|++++.+++|+++..+ ++++.+|.+.+                ..++|+.||+|+|+|+.
T Consensus       132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~----------------g~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS----------------GDVQADQVVLAAGAWAG  194 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCC----------------CEEECCEEEEcCChhhh
Confidence            34577889999999999999999999999999985 67888898764                37999999999999975


Q ss_pred             h
Q psy9487          93 L   93 (101)
Q Consensus        93 l   93 (101)
                      -
T Consensus       195 ~  195 (337)
T TIGR02352       195 E  195 (337)
T ss_pred             h
Confidence            3

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.52  E-value=7e-07  Score=70.53  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=59.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC---CEEecCCceeEEEEe-----cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEE
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYH-----GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVT   83 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~G---v~i~~gt~v~~i~~~-----~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~V   83 (101)
                      +|+++|..+.+.|.+++++.+   ++++.+++|.++..+     +++..+.|.+.+               |.+++|++|
T Consensus       111 ~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~---------------g~~i~a~ll  175 (437)
T TIGR01989       111 ACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSD---------------GQVLYTKLL  175 (437)
T ss_pred             EEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcC---------------CCEEEeeEE
Confidence            789999999999999999876   999999999999762     123334465543               468999999


Q ss_pred             EEeecCCchhhHHHh
Q psy9487          84 IFAEGCHGHLTKSLS   98 (101)
Q Consensus        84 I~A~G~~s~l~~~l~   98 (101)
                      |.|||++|.+.+++.
T Consensus       176 VgADG~~S~vR~~~g  190 (437)
T TIGR01989       176 IGADGSNSNVRKAAN  190 (437)
T ss_pred             EEecCCCChhHHHcC
Confidence            999999999988763

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07538 hypothetical protein; Provisional

Probab=98.52  E-value=7.5e-07  Score=69.55  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCC-EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~Gv-~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+.++|..|++.|++++.+ +|. +|+.+++|+++..++++.++.+...     .+|+       +.+++||+||.|||.
T Consensus        96 ~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~-----~~g~-------~~~~~adlvIgADG~  163 (413)
T PRK07538         96 QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDR-----AGGD-------LVSVRGDVLIGADGI  163 (413)
T ss_pred             eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEecc-----CCCc-------cceEEeeEEEECCCC
Confidence            4679999999999999876 585 6999999999987544433333321     1222       258999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+++++
T Consensus       164 ~S~vR~~l  171 (413)
T PRK07538        164 HSAVRAQL  171 (413)
T ss_pred             CHHHhhhh
Confidence            99998876

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.51  E-value=6.9e-07  Score=70.25  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL   97 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l   97 (101)
                      ..+.+.|.+++++.|++|+++++|++++.+++++|+||++.+    .+++.       ..+.++.||+|+|.++.. ++|
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n-~~m  197 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN-KEM  197 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC-HHH
Confidence            467888999999999999999999999986567999998864    12221       368899999999999986 344


Q ss_pred             hhh
Q psy9487          98 SSR  100 (101)
Q Consensus        98 ~~~  100 (101)
                      .++
T Consensus       198 ~~~  200 (439)
T TIGR01813       198 IAK  200 (439)
T ss_pred             HHH
Confidence            433

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.49  E-value=5.3e-07  Score=70.06  Aligned_cols=66  Identities=27%  Similarity=0.427  Sum_probs=52.4

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .-..+.+.|.+.++++|++|++++++++++.+ +++|+||...+.   .+|+.       ..|+|+.||+|+|..+.
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~-------~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEF-------VRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEE-------EEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeE-------EEEeeeEEEeccCcccc
Confidence            45678889999999999999999999999996 889999999841   23332       58999999999999986

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK11445 putative oxidoreductase; Provisional

Probab=98.47  E-value=8.4e-07  Score=68.19  Aligned_cols=71  Identities=17%  Similarity=0.236  Sum_probs=54.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.++|..||++|.+. .+.||+++.++.++++..+ ++. +.|.+.+     +|+       ..+++|++||+|||++|
T Consensus        93 ~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~-----~g~-------~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         93 YINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWRE-DDG-YHVIFRA-----DGW-------EQHITARYLVGADGANS  157 (351)
T ss_pred             cccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEc-CCE-EEEEEec-----CCc-------EEEEEeCEEEECCCCCc
Confidence            3579999999999885 5779999999999999875 333 3355422     121       13799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+++++
T Consensus       158 ~vr~~l  163 (351)
T PRK11445        158 MVRRHL  163 (351)
T ss_pred             HHhHHh
Confidence            998876

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.46  E-value=1.4e-06  Score=67.76  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=58.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|++.+..+.+.|.+++.+. |++++.+++|+++..+ ++. +.|.+.+               |..++|++||.|||.+
T Consensus       105 g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~a~lvIgADG~~  167 (405)
T PRK08850        105 GHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVG-ESE-AWLTLDN---------------GQALTAKLVVGADGAN  167 (405)
T ss_pred             EEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEee-CCe-EEEEECC---------------CCEEEeCEEEEeCCCC
Confidence            78999999999999999875 7999999999999875 333 3466543               4679999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+++++.
T Consensus       168 S~vR~~~~  175 (405)
T PRK08850        168 SWLRRQMD  175 (405)
T ss_pred             ChhHHHcC
Confidence            99988764

>PRK08244 hypothetical protein; Provisional

Probab=98.46  E-value=1.2e-06  Score=70.07  Aligned_cols=72  Identities=24%  Similarity=0.306  Sum_probs=57.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.+..+.+.|.+.+++.|++++.+++++++..+ ++.+. |.+.+    .+|        ..+++|++||.|||++|
T Consensus        94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g--------~~~i~a~~vVgADG~~S  159 (493)
T PRK08244         94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVE-VVVRG----PDG--------LRTLTSSYVVGADGAGS  159 (493)
T ss_pred             EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEE-EEEEe----CCc--------cEEEEeCEEEECCCCCh
Confidence            578999999999999999999999999999999875 44432 44432    111        14799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+++
T Consensus       160 ~vR~~l  165 (493)
T PRK08244        160 IVRKQA  165 (493)
T ss_pred             HHHHhc
Confidence            998776

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.46  E-value=1.5e-06  Score=66.60  Aligned_cols=69  Identities=29%  Similarity=0.398  Sum_probs=57.1

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ++.+.|..|++.|.+.+++ .|++++.+++|+++..+ ++.+. |.+.+               +..+.++.||+|+|.+
T Consensus       106 ~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~~-v~~~~---------------g~~~~a~~vI~AdG~~  168 (395)
T PRK05732        106 GYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSVR-VTLDD---------------GETLTGRLLVAADGSH  168 (395)
T ss_pred             EEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeEE-EEECC---------------CCEEEeCEEEEecCCC
Confidence            6889999999999999877 48999999999999764 44433 66644               3579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+.+
T Consensus       169 S~vr~~~  175 (395)
T PRK05732        169 SALREAL  175 (395)
T ss_pred             hhhHHhh
Confidence            9998765

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.44  E-value=1.5e-06  Score=66.97  Aligned_cols=69  Identities=16%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+++.|..|.+.|.+++.+.| ++++.++.++++..+ ++.+. |.+.+               |.++.|++||.|||.+
T Consensus       103 ~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~  165 (396)
T PRK08163        103 YAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQ---------------GNRWTGDALIGCDGVK  165 (396)
T ss_pred             EEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcC---------------CCEEecCEEEECCCcC
Confidence            367999999999999998876 999999999999874 44433 55443               4579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+++
T Consensus       166 S~~r~~~  172 (396)
T PRK08163        166 SVVRQSL  172 (396)
T ss_pred             hHHHhhc
Confidence            9997765

>PRK07121 hypothetical protein; Validated

Probab=98.42  E-value=1.6e-06  Score=69.56  Aligned_cols=64  Identities=25%  Similarity=0.376  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.|++|+++++|++++.+++++|+||++.+     +++.       ..|+| +.||+|+|.++..
T Consensus       177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~N  241 (492)
T PRK07121        177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGET-------VAIRARKGVVLAAGGFAMN  241 (492)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcE-------EEEEeCCEEEECCCCcCcC
Confidence            457788999999999999999999999986457999998853     2221       57999 9999999999875

>PRK07588 hypothetical protein; Provisional

Probab=98.42  E-value=1.4e-06  Score=67.34  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=55.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      -+.+.|..|.+.|.+.+. .|++++.+++|+++..+ ++.+. |.+.+               |..+.+++||.|||.+|
T Consensus        97 ~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         97 FTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEH-RDGVR-VTFER---------------GTPRDFDLVIGADGLHS  158 (391)
T ss_pred             eEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEEC-CCeEE-EEECC---------------CCEEEeCEEEECCCCCc
Confidence            368999999999887654 48999999999999875 44443 55544               45789999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+.+
T Consensus       159 ~vR~~~  164 (391)
T PRK07588        159 HVRRLV  164 (391)
T ss_pred             cchhhc
Confidence            997754

>PRK06847 hypothetical protein; Provisional

Probab=98.41  E-value=1.8e-06  Score=65.95  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.|..|.+.|.+.+++.|++|+.+++++++..+ ++. +.|.+.+               |.++.++.||+|+|.+|
T Consensus       101 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        101 GGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSD---------------GTTGRYDLVVGADGLYS  163 (375)
T ss_pred             cccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcC---------------CCEEEcCEEEECcCCCc
Confidence            467899999999999999999999999999999874 443 3455543               46799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+++
T Consensus       164 ~~r~~l  169 (375)
T PRK06847        164 KVRSLV  169 (375)
T ss_pred             chhhHh
Confidence            998776

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.41  E-value=2.1e-06  Score=66.43  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=56.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|++.+..+.+.|.+++++. |++++.+++++++..+ ++.+ .|.+.+               |.++++++||.|||.+
T Consensus       104 g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~-~v~~~~---------------g~~~~~~lvIgADG~~  166 (384)
T PRK08849        104 GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGN-RVTLES---------------GAEIEAKWVIGADGAN  166 (384)
T ss_pred             EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeE-EEEECC---------------CCEEEeeEEEEecCCC
Confidence            68899889999999887664 7999999999999885 3333 355543               4689999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+++++
T Consensus       167 S~vR~~~  173 (384)
T PRK08849        167 SQVRQLA  173 (384)
T ss_pred             chhHHhc
Confidence            9998875

>PRK09126 hypothetical protein; Provisional

Probab=98.40  E-value=2.7e-06  Score=65.43  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=57.4

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|.+.|..+++.|.+++.+ .|++|+.+++|+++..+ ++. +.|.+.+               |.++.|++||.|||.+
T Consensus       104 g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG~~  166 (392)
T PRK09126        104 GYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLAN---------------GRRLTARLLVAADSRF  166 (392)
T ss_pred             eEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcC---------------CCEEEeCEEEEeCCCC
Confidence            6889999999999998854 79999999999999774 443 3466543               4689999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+++
T Consensus       167 S~vr~~~  173 (392)
T PRK09126        167 SATRRQL  173 (392)
T ss_pred             chhhHhc
Confidence            9998876

>PRK06184 hypothetical protein; Provisional

Probab=98.40  E-value=1.6e-06  Score=69.48  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+++.+..+.+.|.+.+++.|++|+.+++++++..+ ++.|+ +.+.+    .++        +.+++|++||.|||++|
T Consensus       103 ~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~----~~~--------~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        103 PLMVPQWRTERILRERLAELGHRVEFGCELVGFEQD-ADGVT-ARVAG----PAG--------EETVRARYLVGADGGRS  168 (502)
T ss_pred             ceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEE-EEEEe----CCC--------eEEEEeCEEEECCCCch
Confidence            578999999999999999999999999999999875 44443 33321    001        36899999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.++|-
T Consensus       169 ~vR~~lg  175 (502)
T PRK06184        169 FVRKALG  175 (502)
T ss_pred             HHHHhCC
Confidence            9988763

>PRK07190 hypothetical protein; Provisional

Probab=98.40  E-value=1.7e-06  Score=69.81  Aligned_cols=70  Identities=11%  Similarity=0.218  Sum_probs=57.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.+..+.+.|.+++++.|++++.+++|+++..+ ++.+. +.+.+               |.+++|+.||.|||++|
T Consensus       103 ~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~-v~~~~---------------g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        103 FLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCL-TTLSN---------------GERIQSRYVIGADGSRS  165 (487)
T ss_pred             eEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeE-EEECC---------------CcEEEeCEEEECCCCCH
Confidence            467889999999999999999999999999999886 34333 33322               35799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.+++.
T Consensus       166 ~vR~~lg  172 (487)
T PRK07190        166 FVRNHFN  172 (487)
T ss_pred             HHHHHcC
Confidence            9988764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.37  E-value=3.3e-06  Score=66.97  Aligned_cols=69  Identities=28%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL   97 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l   97 (101)
                      ..+.++|.+++++.|++|+++++|++++.+ +++|+||.+.+    .+++       ...++|+.||+|+|.++.....+
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~~  198 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREWL  198 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHHH
Confidence            467788999999999999999999999985 78999998742    2222       25799999999999988765444


Q ss_pred             h
Q psy9487          98 S   98 (101)
Q Consensus        98 ~   98 (101)
                      .
T Consensus       199 ~  199 (466)
T PRK08274        199 R  199 (466)
T ss_pred             H
Confidence            3

>PLN02661 Putative thiazole synthesis

Probab=98.37  E-value=5.7e-06  Score=65.27  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=63.2

Q ss_pred             CCCCCCCCCcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487           3 FGMPMNNHGNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH   79 (101)
Q Consensus         3 ~~~~~~~~~~~~v~r--~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~   79 (101)
                      +|.+++.+++|.+.+  ..+.+.|.+++.+ .|++++.++.|.+++.+ +++|.||.++..-...++.+.....| ..|+
T Consensus       155 lGV~fd~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp-~~I~  232 (357)
T PLN02661        155 LGVPYDEQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDP-NVME  232 (357)
T ss_pred             cCCCcccCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccce-eEEE
Confidence            467777777776653  3445667777765 79999999999999996 78999999753211112111000111 4699


Q ss_pred             ccEEEEeecCCchhhHHH
Q psy9487          80 AKVTIFAEGCHGHLTKSL   97 (101)
Q Consensus        80 A~~VI~A~G~~s~l~~~l   97 (101)
                      |+.||+|+|..+++...+
T Consensus       233 AkaVVlATGh~g~~ga~~  250 (357)
T PLN02661        233 AKVVVSSCGHDGPFGATG  250 (357)
T ss_pred             CCEEEEcCCCCCcchhhh
Confidence            999999999888665443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.36  E-value=2.7e-06  Score=65.87  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=55.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|+..+..|.+.|.+++.+. |++++.+++++++..+ ++.+ .|.+.+     +++       ..+++|++||.|||.+
T Consensus       115 ~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~-~~~~-~v~~~~-----~~~-------~~~i~adlvIgADG~~  180 (415)
T PRK07364        115 GYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQ-QDAA-TVTLEI-----EGK-------QQTLQSKLVVAADGAR  180 (415)
T ss_pred             EEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCee-EEEEcc-----CCc-------ceEEeeeEEEEeCCCC
Confidence            57777678999999998886 7999999999999875 4433 355432     111       1479999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+++++.
T Consensus       181 S~vR~~~~  188 (415)
T PRK07364        181 SPIRQAAG  188 (415)
T ss_pred             chhHHHhC
Confidence            99987763

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.36  E-value=3e-06  Score=65.19  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +|.+.+..+.+.|.+++++.+...+.+++|+++..+ ++.+. |.+.+               +.++.|++||+|||.+|
T Consensus       105 g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~-v~~~~---------------g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        105 GYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEVT-VTLAD---------------GTTLSARLVVGADGRNS  167 (388)
T ss_pred             EEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEE-EEECC---------------CCEEEEeEEEEecCCCc
Confidence            799999999999999999876444889999999875 44443 55543               45799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+++
T Consensus       168 ~vr~~~  173 (388)
T PRK07494        168 PVREAA  173 (388)
T ss_pred             hhHHhc
Confidence            997765

>PRK12839 hypothetical protein; Provisional

Probab=98.34  E-value=4.6e-06  Score=68.74  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=56.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~   90 (101)
                      ...+.-..|...|+++|++.|++|+.+++|++++.+++++|+||...+    .+++        ..+.+ +.||+|+|.+
T Consensus       208 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~--------~~i~aak~VVLAtGGf  275 (572)
T PRK12839        208 MQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGA--------VTVEATRGVVLATGGF  275 (572)
T ss_pred             cccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCc--------EEEEeCCEEEEcCCCc
Confidence            334456678888999999999999999999999986578999998754    2232        34444 8999999999


Q ss_pred             chhhH
Q psy9487          91 GHLTK   95 (101)
Q Consensus        91 s~l~~   95 (101)
                      +....
T Consensus       276 ~~n~~  280 (572)
T PRK12839        276 PNDVD  280 (572)
T ss_pred             ccCHH
Confidence            98644

>PRK06126 hypothetical protein; Provisional

Probab=98.33  E-value=3.1e-06  Score=68.42  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+.+..|.+.|.+.+++. |++|+.++.++++..+ ++.|. +.+.+   ..+|+.       .+++|++||.|||++
T Consensus       120 ~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---~~~g~~-------~~i~ad~vVgADG~~  187 (545)
T PRK06126        120 PHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVT-ATVED---LDGGES-------LTIRADYLVGCDGAR  187 (545)
T ss_pred             cccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEE-EEEEE---CCCCcE-------EEEEEEEEEecCCcc
Confidence            57789999999999999875 8999999999999885 44444 44432   122321       579999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+.++|.
T Consensus       188 S~VR~~lg  195 (545)
T PRK06126        188 SAVRRSLG  195 (545)
T ss_pred             hHHHHhcC
Confidence            99988764

>PRK06996 hypothetical protein; Provisional

Probab=98.32  E-value=4.6e-06  Score=64.92  Aligned_cols=72  Identities=25%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+|+++|..|++.|.+++++.|++++.+++++++..+ +..+ -+...+    .+|        +..++|++||.|||..
T Consensus       108 ~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v-~v~~~~----~~g--------~~~i~a~lvIgADG~~  173 (398)
T PRK06996        108 LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGV-TLALGT----PQG--------ARTLRARIAVQAEGGL  173 (398)
T ss_pred             CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeE-EEEECC----CCc--------ceEEeeeEEEECCCCC
Confidence            3799999999999999999999999999999999654 2222 244332    111        1579999999999974


Q ss_pred             -chhhHH
Q psy9487          91 -GHLTKS   96 (101)
Q Consensus        91 -s~l~~~   96 (101)
                       |.+.+.
T Consensus       174 ~s~~r~~  180 (398)
T PRK06996        174 FHDQKAD  180 (398)
T ss_pred             chHHHHH
Confidence             555444

>PRK06834 hypothetical protein; Provisional

Probab=98.32  E-value=3.1e-06  Score=68.28  Aligned_cols=71  Identities=23%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .++.+.+..+.+.|.+.+++.|++|+.+++++++..+ ++.+ .|.+.+               |.+++|+.||.|||++
T Consensus        93 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v-~v~~~~---------------g~~i~a~~vVgADG~~  155 (488)
T PRK06834         93 YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQD-DTGV-DVELSD---------------GRTLRAQYLVGCDGGR  155 (488)
T ss_pred             ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeE-EEEECC---------------CCEEEeCEEEEecCCC
Confidence            3678899999999999999999999999999999885 4433 244432               3579999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+.+++-
T Consensus       156 S~vR~~lg  163 (488)
T PRK06834        156 SLVRKAAG  163 (488)
T ss_pred             CCcHhhcC
Confidence            99877653

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.31  E-value=3e-06  Score=69.67  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+-+.|.+++++.|++|++++.+++++.+++|+|+||...+   ..+|+.       ..|+|+.||+|+|..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccc
Confidence            467788999999999999999999999986578999998754   123432       579999999999998865

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.30  E-value=3.9e-06  Score=69.12  Aligned_cols=68  Identities=16%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchhhHHH
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKSL   97 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l~~~l   97 (101)
                      .+...|.+.+++.|++|+++++|++++.+ +++|+||....     ++.       ...|.| +.||+|+|..+.+. +|
T Consensus       218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n~-em  283 (564)
T PRK12845        218 ALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHDM-EM  283 (564)
T ss_pred             HHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCccccH-HH
Confidence            45567888899999999999999999975 78999998753     121       146777 58999999999884 44


Q ss_pred             hhh
Q psy9487          98 SSR  100 (101)
Q Consensus        98 ~~~  100 (101)
                      .++
T Consensus       284 ~~~  286 (564)
T PRK12845        284 RWK  286 (564)
T ss_pred             HHH
Confidence            433

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.30  E-value=3.8e-06  Score=69.28  Aligned_cols=64  Identities=25%  Similarity=0.404  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhhH
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTK   95 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~~   95 (101)
                      +...|.+.+++.|++|+++++|++|+.|++|+|+||....     ++..       ..|+|+ .||+|+|..+...+
T Consensus       215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~-------~~i~a~~aVilAtGGf~~N~e  279 (584)
T PRK12835        215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRT-------LRIGARRGVILATGGFDHDMD  279 (584)
T ss_pred             HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcE-------EEEEeceeEEEecCcccCCHH
Confidence            4445778889999999999999999997578999998753     2221       579997 59999999998743

>PRK05868 hypothetical protein; Validated

Probab=98.30  E-value=5.3e-06  Score=64.38  Aligned_cols=68  Identities=16%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.|..|.+.|.+ +...|++++.+++|+++..+ ++. +.|...+               |.+++||+||.|||.+|
T Consensus        99 ~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~d---------------g~~~~adlvIgADG~~S  160 (372)
T PRK05868         99 DIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDD-GDS-VRVTFER---------------AAAREFDLVIGADGLHS  160 (372)
T ss_pred             eEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEec-CCe-EEEEECC---------------CCeEEeCEEEECCCCCc
Confidence            568889999998654 55679999999999999764 333 3366554               46799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+++.+
T Consensus       161 ~vR~~~  166 (372)
T PRK05868        161 NVRRLV  166 (372)
T ss_pred             hHHHHh
Confidence            998876

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.30  E-value=4.3e-06  Score=64.88  Aligned_cols=74  Identities=19%  Similarity=0.101  Sum_probs=56.7

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+++.+..+.+.|++++++.|++++.+++++++.-. ++....|....     +|+.       .+++|++||.|||++|
T Consensus        97 ~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~-----~G~~-------~~i~ad~vVgADG~~S  163 (392)
T PRK08243         97 VTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEK-----DGEE-------HRLDCDFIAGCDGFHG  163 (392)
T ss_pred             EEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEc-----CCeE-------EEEEeCEEEECCCCCC
Confidence            356678899999999999999999999999998652 33334465532     2221       4799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+++++.
T Consensus       164 ~vR~~~~  170 (392)
T PRK08243        164 VSRASIP  170 (392)
T ss_pred             chhhhcC
Confidence            9988763

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.28  E-value=4.9e-06  Score=68.22  Aligned_cols=63  Identities=29%  Similarity=0.485  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.|++|+++++|++++.+ +++|+||.+..     +|+       ...|+|+ .||+|+|..+..
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N  271 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN  271 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC
Confidence            456778899999999999999999999986 79999998853     222       1578995 799999999987

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.28  E-value=5.4e-06  Score=66.93  Aligned_cols=69  Identities=23%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .++=..+...|++.|++.|++|+++++|+++..+ ++++++|++.+.   .+|+       ..+|+|+.||+|+|+|+.-
T Consensus       124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa~~  192 (516)
T TIGR03377       124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWAGR  192 (516)
T ss_pred             EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcchHH
Confidence            5677888899999999999999999999999985 788999988541   1222       2579999999999999864

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.27  E-value=5.2e-06  Score=64.60  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+.|..|.+.|.+++.+ .|++++.+++|+++..+ ++.+ .|...+    .++        +..+.||+||.|||.+|
T Consensus       102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~----~~~--------~~~~~adlvIgADG~~S  167 (400)
T PRK06475        102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIR----TNS--------VETVSAAYLIACDGVWS  167 (400)
T ss_pred             eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEe----CCC--------CcEEecCEEEECCCccH
Confidence            468999999999999977 48999999999999764 4443 244322    011        25799999999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      .+.+++
T Consensus       168 ~vR~~~  173 (400)
T PRK06475        168 MLRAKA  173 (400)
T ss_pred             hHHhhc
Confidence            998775

>PRK06753 hypothetical protein; Provisional

Probab=98.25  E-value=3.3e-06  Score=64.54  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .++.++|..|++.|.+.+..  ++|+++++|+++..+ ++.+ .|.+.+               |.++.+++||.|||.+
T Consensus        91 ~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~~~~vigadG~~  151 (373)
T PRK06753         91 LNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENE-TDKV-TIHFAD---------------GESEAFDLCIGADGIH  151 (373)
T ss_pred             ccccccHHHHHHHHHHhCCC--ceEEECCEEEEEEec-CCcE-EEEECC---------------CCEEecCEEEECCCcc
Confidence            36889999999999988764  689999999999864 4443 355543               4679999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+++++.
T Consensus       152 S~vR~~~~  159 (373)
T PRK06753        152 SKVRQSVN  159 (373)
T ss_pred             hHHHHHhC
Confidence            99988763

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.24  E-value=8e-06  Score=67.20  Aligned_cols=66  Identities=33%  Similarity=0.443  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchhhHH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS   96 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l~~~   96 (101)
                      ..|.+.|.+.|++.||+|+++++|++++.+ +++|+||++...    ++        ...|+| +.||+|+|.++.....
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~----~~--------~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETP----GG--------LQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEEC----Cc--------EEEEEeCCEEEEcCCCcccCHHH
Confidence            456688999999999999999999999986 789999987531    11        146899 9999999999976443

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.24  E-value=5.9e-06  Score=67.85  Aligned_cols=65  Identities=20%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+-+.|.+++++.|++|++++.+++++.+ +|+|+||...+.   .+|+.       ..|+|+.||+|+|..+.+
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCL---ETGEI-------HRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEEeCeEEECCCCcccc
Confidence            357788899999999999999999999986 799999987531   23332       579999999999998764

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.24  E-value=5.3e-06  Score=68.91  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.|++|++++.+++++.+++++|.||...+.   .+|+.       ..|+|+.||+|+|..+.+
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSM---EDGSI-------HRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEEC---CCCeE-------EEEECCcEEEeCCCCccc
Confidence            3778899999999999999999999999844789999987431   23332       579999999999988754

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.4e-05  Score=60.13  Aligned_cols=94  Identities=22%  Similarity=0.388  Sum_probs=69.9

Q ss_pred             CCCCCCCC--CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc
Q psy9487           3 FGMPMNNH--GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA   80 (101)
Q Consensus         3 ~~~~~~~~--~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A   80 (101)
                      ||-+.+.+  |-|+.+-..|..-|+.+|-++|++|+.++.|.++++.++.||.||.++-.-+...+-+    .+=-.|+|
T Consensus        92 ~gI~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh----vDPl~i~a  167 (262)
T COG1635          92 FGIRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH----VDPLTIRA  167 (262)
T ss_pred             hCCcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc----cCcceeeE
Confidence            45555544  3678888899999999999999999999999999986333899999874222222211    01146999


Q ss_pred             cEEEEeecCCchhhHHHhhh
Q psy9487          81 KVTIFAEGCHGHLTKSLSSR  100 (101)
Q Consensus        81 ~~VI~A~G~~s~l~~~l~~~  100 (101)
                      ++||+|+|-.+.+.+.+-+|
T Consensus       168 ~~VvDaTGHda~v~~~~~kr  187 (262)
T COG1635         168 KAVVDATGHDAEVVSFLAKR  187 (262)
T ss_pred             EEEEeCCCCchHHHHHHHHh
Confidence            99999999999887666543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.23  E-value=6.7e-06  Score=67.62  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCchhhHH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS   96 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s~l~~~   96 (101)
                      ..+.+.|.+++++.|++|+++++|++++.+ +++|+||.+..     +++       ...|.| +.||+|+|..+.+. +
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n~-e  286 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRHP-Q  286 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccCH-H
Confidence            357778899999999999999999999985 79999998853     121       146886 68999999999984 4


Q ss_pred             Hhhh
Q psy9487          97 LSSR  100 (101)
Q Consensus        97 l~~~  100 (101)
                      |.++
T Consensus       287 m~~~  290 (578)
T PRK12843        287 LRRE  290 (578)
T ss_pred             HHHH
Confidence            4443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.22  E-value=7e-06  Score=67.12  Aligned_cols=69  Identities=22%  Similarity=0.214  Sum_probs=56.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .++=..+...++..|++.|++++++++|+++..+ +++++||++.+.   .+++       +.+|+|+.||+|+|+|+.-
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa~~  213 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWGQH  213 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhHHH
Confidence            4677788888899999999999999999999885 789999998541   1222       2579999999999999853

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.22  E-value=9.7e-06  Score=63.90  Aligned_cols=66  Identities=26%  Similarity=0.270  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS   96 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~   96 (101)
                      ..+.+.|.+++++.|++|+++++|++++.++ +++|+||.+.+.              +..++|+.||+|+|..+.+...
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--------------~~~i~ak~VIlAtGG~~~n~~~  188 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--------------THRITTQALVLAAGGLGANRDW  188 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--------------cEEEEcCEEEEcCCCcccCHHH
Confidence            4577888999999999999999999998853 578999886420              2579999999999998887543


Q ss_pred             H
Q psy9487          97 L   97 (101)
Q Consensus        97 l   97 (101)
                      +
T Consensus       189 ~  189 (432)
T TIGR02485       189 L  189 (432)
T ss_pred             H
Confidence            3

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.21  E-value=9.8e-06  Score=65.58  Aligned_cols=64  Identities=14%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      .+.+.|.+.+++.|++|+++++|++++.+ +++|+||.+..    .+++       ...|+|+.||+|+|.++...
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n~  254 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGANK  254 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccCH
Confidence            46678899999999999999999999874 78999998753    1222       14799999999999988773

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.19  E-value=6.3e-06  Score=66.77  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=58.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+.+..+.+.|.+.+.+. |++|+.+++|+++..+ ++.| .|.+.+    .+|+.       .+++|++||.|||++
T Consensus       107 ~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v-~v~~~~----~~G~~-------~~i~ad~vVgADG~~  173 (538)
T PRK06183        107 RNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGV-TVTLTD----ADGQR-------ETVRARYVVGCDGAN  173 (538)
T ss_pred             hccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeE-EEEEEc----CCCCE-------EEEEEEEEEecCCCc
Confidence            36788999999999999885 9999999999999875 3443 355432    13321       589999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+.++|.
T Consensus       174 S~vR~~lg  181 (538)
T PRK06183        174 SFVRRTLG  181 (538)
T ss_pred             hhHHHHcC
Confidence            99988764

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.18  E-value=9.9e-06  Score=62.74  Aligned_cols=61  Identities=23%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++=..+.+.|++.+++.|++|+++++|+++..+ ++++++|++.+                .+++|+.||+|+|+|+.
T Consensus       198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~----------------~~~~a~~VV~a~G~~~~  258 (416)
T PRK00711        198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGG----------------GVITADAYVVALGSYST  258 (416)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCC----------------cEEeCCEEEECCCcchH
Confidence            345578889999999999999999999999875 67777787753                47999999999999984

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.18  E-value=3.5e-07  Score=72.51  Aligned_cols=71  Identities=27%  Similarity=0.327  Sum_probs=0.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+++..+..+|.+.+++.|++|++++.|.+++.+ +++|++|.+.++    +|        ..+|+|++||+|+| .+.
T Consensus        85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~----~g--------~~~i~A~~~IDaTG-~g~  150 (428)
T PF12831_consen   85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETK----SG--------RKEIRAKVFIDATG-DGD  150 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccc----cc--------cccccccccccccc-ccc
Confidence            57889999999999999999999999999999996 789999999862    23        26899999999999 455


Q ss_pred             hhHHH
Q psy9487          93 LTKSL   97 (101)
Q Consensus        93 l~~~l   97 (101)
                      |+...
T Consensus       151 l~~~a  155 (428)
T PF12831_consen  151 LAALA  155 (428)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            55443

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.17  E-value=1.4e-05  Score=62.10  Aligned_cols=63  Identities=22%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++-..+.+.|++.|++.|++++++++|+++..++++++.+|++.+                ..+.|+.||+|+|.|+..
T Consensus       180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~----------------g~i~a~~vVvaagg~~~~  242 (407)
T TIGR01373       180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR----------------GFIGAKKVGVAVAGHSSV  242 (407)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC----------------ceEECCEEEECCChhhHH
Confidence            355677788999999999999999999999764357888888865                369999999998888754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.17  E-value=9.5e-06  Score=67.04  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+-..|.+++++.|+++++++.+++++.+++|+|+||...+.   .+|+.       ..|+|+.||+|+|..+.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGEV-------VYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCcccc
Confidence            4577788999999999999999999999854789999987531   23332       579999999999998865

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.16  E-value=9e-06  Score=67.22  Aligned_cols=65  Identities=18%  Similarity=0.316  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++.|++|++++.+++++.+++++|+||...+   .++|+.       ..|.|+.||+|+|..+.+
T Consensus       150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCccc
Confidence            57788999999999999999999999986447999998743   123332       589999999999998754

>PRK08275 putative oxidoreductase; Provisional

Probab=98.16  E-value=1.2e-05  Score=65.77  Aligned_cols=65  Identities=31%  Similarity=0.353  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.++|.+++++.|++|++++.|++++.+++++|.||.+.+.   .+|+.       ..++|+.||+|+|..+.+
T Consensus       138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence            578899999999999999999999999854689999987531   12322       469999999999998765

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.15  E-value=1.2e-05  Score=65.56  Aligned_cols=64  Identities=28%  Similarity=0.446  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++.|+++++++.+++++.+ +++|+||...+.   .+|+.       ..++|+.||+|+|..+.+
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlAtGG~~~~  193 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDL---KTGEI-------VFFRAKAVVLATGGYGRI  193 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCeEEECCCcccCC
Confidence            56678899999999999999999999986 799999987531   12321       479999999999998865

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.15  E-value=9.7e-06  Score=67.68  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.|++|++++.+++++.+++++|+||.+.+.   .+|+.       ..|.|+.||+|+|..+.+
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNM---EDGTL-------HRFRAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCeE-------EEEEcCeEEECCCCCccc
Confidence            4577889999999999999999999999854689999987541   23432       579999999999998765

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.14  E-value=1.8e-05  Score=65.92  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++=..+...|++.|++.|++|+.+++|+++..++ ++++++|++.+.   .+++       ..+|+|+.||+|+|+|+.-
T Consensus       229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws~~  298 (627)
T PLN02464        229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFCDE  298 (627)
T ss_pred             EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhHHH
Confidence            4778899999999999999999999999998853 478999887541   1121       1379999999999999864


Q ss_pred             h
Q psy9487          94 T   94 (101)
Q Consensus        94 ~   94 (101)
                      -
T Consensus       299 l  299 (627)
T PLN02464        299 V  299 (627)
T ss_pred             H
Confidence            3

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.13  E-value=1.6e-05  Score=63.36  Aligned_cols=61  Identities=25%  Similarity=0.389  Sum_probs=52.0

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      -+.++|..|.+|+.+.+++ -+++|+. ..|++|..+ +++|.||++.+               |.+++|+.||+|+|.
T Consensus        89 r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~~~v~GV~~~~---------------g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   89 RAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-NGKVKGVVTKD---------------GEEIEADAVVLATGT  150 (392)
T ss_dssp             EEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-TTEEEEEEETT---------------SEEEEECEEEE-TTT
T ss_pred             HhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEec-CCeEEEEEeCC---------------CCEEecCEEEEeccc
Confidence            4699999999999999988 6788875 689999995 89999999976               689999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.13  E-value=1.2e-05  Score=66.35  Aligned_cols=66  Identities=26%  Similarity=0.380  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..|.+.|.+++++.|+++++++.+++++.+++++|.||.+.+.   .+|+.       ..++|+.||+|+|..+.+
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI  213 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence            4688899999999999999999999999864689999987541   12321       478999999999998865

>TIGR02730 carot_isom carotene isomerase

Probab=98.13  E-value=1.1e-05  Score=64.64  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ..+.+.|.+.+++.|++|+++++|.+|..+ ++++.+|++.+               |.++.|+.||.|.|++..+.
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~  289 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFG  289 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCChHHHHH
Confidence            567788999999999999999999999985 78999999865               46799999999999987764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02697 lycopene epsilon cyclase

Probab=98.12  E-value=1.4e-05  Score=65.63  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .++|..|+++|++++.+.|+++ .++.|+++..+ ++.+..+...+               |.++.|++||+|+|++|.
T Consensus       188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~d---------------G~~i~A~lVI~AdG~~S~  249 (529)
T PLN02697        188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACED---------------GRVIPCRLATVASGAASG  249 (529)
T ss_pred             EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcC---------------CcEEECCEEEECCCcChh
Confidence            4999999999999999999998 56799998764 44444344333               468999999999999993

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.11  E-value=1.4e-05  Score=64.14  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC-ch-hhH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH-GH-LTK   95 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~-s~-l~~   95 (101)
                      .++.+.|.+.++++|++++.+++|.++..+ ++++.+|.+.+.+     +        ..++|+.||+|+|+| |. |.+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~-----~--------~~l~AD~vVLAaGaw~S~gL~a  328 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHR-----D--------IPLRADHFVLASGSFFSNGLVA  328 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCc-----c--------ceEECCEEEEccCCCcCHHHHh
Confidence            456777899999999999999999999985 7889988875410     1        479999999999999 43 555


Q ss_pred             HH
Q psy9487          96 SL   97 (101)
Q Consensus        96 ~l   97 (101)
                      ++
T Consensus       329 ~l  330 (419)
T TIGR03378       329 EF  330 (419)
T ss_pred             hc
Confidence            44

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.10  E-value=1.6e-05  Score=65.32  Aligned_cols=64  Identities=22%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++.|++|++++.+++++.+ +|+|+||.+.+.   .+++.       ..++|+.||+|+|..+.+
T Consensus       137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        137 ALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML  200 (566)
T ss_pred             HHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence            46667888999999999999999999996 799999988651   12222       479999999999998854

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.10  E-value=2.4e-05  Score=60.19  Aligned_cols=65  Identities=15%  Similarity=0.054  Sum_probs=52.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++|..|++.|.+++++.|++++. ..|.++..+ ++..+.|.+.+               |.+++|+.||+|+|.+|
T Consensus        79 ~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~-~~~~~~v~~~~---------------g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        79 YGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEAD-GVALSTVYCAG---------------GQRIQARLVIDARGFGP  141 (388)
T ss_pred             eeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEec-CCceeEEEeCC---------------CCEEEeCEEEECCCCch
Confidence            34699999999999999999999975 478888764 35556676654               45899999999999998


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      .+
T Consensus       142 ~~  143 (388)
T TIGR01790       142 LV  143 (388)
T ss_pred             hc
Confidence            44

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.08  E-value=3.3e-05  Score=63.42  Aligned_cols=70  Identities=26%  Similarity=0.358  Sum_probs=55.1

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l   93 (101)
                      ..-..+...|.+++++.|++|+++++|++++.+ +++|+||.+.+.    ++        ...+.++ .||+|+|.++..
T Consensus       211 ~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~----~~--------~~~i~a~k~VVlAtGg~~~n  277 (574)
T PRK12842        211 TSGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDA----GG--------ERRITARRGVVLACGGFSHD  277 (574)
T ss_pred             ccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcC----Cc--------eEEEEeCCEEEEcCCCccch
Confidence            344567788899999999999999999999986 789999988641    11        1368885 799999999966


Q ss_pred             hHHH
Q psy9487          94 TKSL   97 (101)
Q Consensus        94 ~~~l   97 (101)
                      ...+
T Consensus       278 ~~~~  281 (574)
T PRK12842        278 LARI  281 (574)
T ss_pred             HHHH
Confidence            4433

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.07  E-value=2e-05  Score=64.92  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.||+|++++.|++++.+++   ++|+||.+.+.   ++++.       ..|+|+.||+|+|..+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence            45778899999999999999999999998632   89999987431   22221       468999999999998855

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.07  E-value=1.4e-05  Score=65.86  Aligned_cols=71  Identities=23%  Similarity=0.205  Sum_probs=58.3

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++++=..|.-.++..|.+.|++++..++|++++.+ ++ |+||++.|.   .+|+.       .+|+|+.||.|+|+|+-
T Consensus       159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~d  226 (532)
T COG0578         159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWVD  226 (532)
T ss_pred             ceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccHH
Confidence            44555677777899999999999999999999996 66 999999872   23443       78999999999999986


Q ss_pred             hhH
Q psy9487          93 LTK   95 (101)
Q Consensus        93 l~~   95 (101)
                      --.
T Consensus       227 ~i~  229 (532)
T COG0578         227 EIL  229 (532)
T ss_pred             HHH
Confidence            543

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.07  E-value=2.2e-05  Score=63.71  Aligned_cols=72  Identities=22%  Similarity=0.273  Sum_probs=54.7

Q ss_pred             EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+.+..+.++|.+++++. |++++.+++++++..+ ++.+. +.+.+    .++        ..+++|++||.|||++|
T Consensus       120 ~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g--------~~~i~ad~vVgADG~~S  185 (547)
T PRK08132        120 INLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQH-DDGVT-LTVET----PDG--------PYTLEADWVIACDGARS  185 (547)
T ss_pred             EecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEc-CCEEE-EEEEC----CCC--------cEEEEeCEEEECCCCCc
Confidence            4478889999999999886 7999999999999875 33332 33322    111        14799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.+.|-
T Consensus       186 ~vR~~lg  192 (547)
T PRK08132        186 PLREMLG  192 (547)
T ss_pred             HHHHHcC
Confidence            9987653

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.06  E-value=2.4e-05  Score=63.82  Aligned_cols=77  Identities=21%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHH----HCCCEEecCCceeEEEEecCCcEEEEEecc--ccccCCCCCC-cCCCCCeEEEccEEEEeecCCc
Q psy9487          19 HVVKWLGEQAE----AMGVEIYPGIPASEVLYHGDGSVKGIATGD--VGIAKDGSPK-DTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        19 ~~d~~l~~~A~----~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~--~g~~~~g~~~-~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.|.++++    ..|++|++++++++++.+ +++|+||.+.+  .+...+|+.. ..-..-..|+|+.||+|+|..+
T Consensus       149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~  227 (549)
T PRK12834        149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG  227 (549)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence            35566666654    236999999999999986 79999998632  1100000000 0000015799999999999999


Q ss_pred             hhhHH
Q psy9487          92 HLTKS   96 (101)
Q Consensus        92 ~l~~~   96 (101)
                      .+.+.
T Consensus       228 ~n~em  232 (549)
T PRK12834        228 GNHEL  232 (549)
T ss_pred             cCHHH
Confidence            88443

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.05  E-value=2.3e-05  Score=65.39  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=49.7

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.|.+++++.||+|++++.|++++.+ +++|+||.+.+.   .+|+.       ..|.|+.||+|+|..+.+
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV  234 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence            56677888999999999999999986 789999998641   12322       479999999999998864

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.02  E-value=3.3e-05  Score=62.64  Aligned_cols=67  Identities=16%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhhHHHh
Q psy9487          21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSLS   98 (101)
Q Consensus        21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~~~l~   98 (101)
                      ...|.+++++ .|++|+++++|++++.+ +++|+||....     +++.       ..|+|+ .||+|+|..+.+. .|.
T Consensus       176 ~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-----~g~~-------~~i~A~k~VIlAtGG~~~n~-~m~  241 (513)
T PRK12837        176 IGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-----GGER-------RRVRARRGVLLAAGGFEQND-DMR  241 (513)
T ss_pred             HHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-----CCcE-------EEEEeCceEEEeCCCccCCH-HHH
Confidence            3334555555 59999999999999986 78999998743     2221       579996 7999999998873 444


Q ss_pred             hhC
Q psy9487          99 SRF  101 (101)
Q Consensus        99 ~~~  101 (101)
                      ++|
T Consensus       242 ~~~  244 (513)
T PRK12837        242 ARY  244 (513)
T ss_pred             HHh
Confidence            443

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.02  E-value=4.5e-05  Score=58.24  Aligned_cols=63  Identities=21%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++-..+.+.|.+.+++.|++++.+++|+++..+ ++.+ .|.+.+                .++.|+.||+|+|.|+
T Consensus       139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~----------------~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTK----------------GSYQANKLVVTAGAWT  200 (380)
T ss_pred             CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCC----------------CEEEeCEEEEecCcch
Confidence            445577789999999999999999999999999874 4444 476643                4699999999999985


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       201 ~  201 (380)
T TIGR01377       201 S  201 (380)
T ss_pred             H
Confidence            4

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=3.2e-05  Score=63.56  Aligned_cols=65  Identities=25%  Similarity=0.372  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+-+.|.+++++.|++|++++.|++++.+ +++|.||...+.   .+++.       ..++|+.||+|+|.++.+
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHI---ADGRL-------EVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCEEEECCCCCcCC
Confidence            456778899999999999999999999985 789999986431   12221       469999999999998865

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.00  E-value=3.5e-05  Score=62.87  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             cEEEEhHHHHHHHHHHHHH----CC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487          12 NYVVRLGHVVKWLGEQAEA----MG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF   85 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~----~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~   85 (101)
                      +..++-..+.+.|++.|++    .|  ++|+++++|++|..+ ++.++.|.+.+                .+++|+.||+
T Consensus       205 g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~----------------G~i~A~~VVv  267 (497)
T PTZ00383        205 LTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNR----------------GEIRARFVVV  267 (497)
T ss_pred             CEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECC----------------CEEEeCEEEE
Confidence            3567888999999999999    88  889999999999874 56677788764                4699999999


Q ss_pred             eecCCch-hhHH
Q psy9487          86 AEGCHGH-LTKS   96 (101)
Q Consensus        86 A~G~~s~-l~~~   96 (101)
                      |+|+|+. |+++
T Consensus       268 aAG~~S~~La~~  279 (497)
T PTZ00383        268 SACGYSLLFAQK  279 (497)
T ss_pred             CcChhHHHHHHH
Confidence            9999985 3444

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.99  E-value=2.6e-05  Score=65.36  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...|.+++++.|++|++++.|++++.+ +++|.||.+.+.   .+|+.       ..+.|+.||+|+|.++.+
T Consensus       159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        159 TMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCL---ITGEL-------RAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCcccCC
Confidence            34567888999999999999999999985 789999988641   23332       568999999999998876

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.99  E-value=1.8e-05  Score=61.07  Aligned_cols=63  Identities=11%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++-..+.+.|++.+++ |++|+++++|+++..+ +++ +.|++.+               |..++|+.||+|+|+|+.
T Consensus       130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---------------GEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence            345667888899999999 9999999999999875 454 5577754               356899999999999985


Q ss_pred             h
Q psy9487          93 L   93 (101)
Q Consensus        93 l   93 (101)
                      .
T Consensus       192 ~  192 (381)
T TIGR03197       192 Q  192 (381)
T ss_pred             c
Confidence            4

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.99  E-value=3.7e-05  Score=62.84  Aligned_cols=69  Identities=25%  Similarity=0.320  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+-+.|.+++++.|+++++++.|++++.+++++|.||.+.+.....++.       -..++|+.||+|+|.++.+
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g-------~~~i~Ak~VIlATGG~~~~  212 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG-------VGAVHAPAVVLATGGLGQL  212 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc-------EEEEEcCeEEECCCCCCCC
Confidence            35677889999999999999999999998645799999875311000110       1479999999999998865

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.98  E-value=6.9e-05  Score=62.51  Aligned_cols=80  Identities=13%  Similarity=0.144  Sum_probs=58.5

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      +..++++..+.++|.+.+++.|.  ++..+++++++..++++ .-+.|.+.+.....+|+.       .+++|++||.||
T Consensus       134 ~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~-------~tv~A~~lVGaD  206 (634)
T PRK08294        134 PHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEE-------ETVRAKYVVGCD  206 (634)
T ss_pred             ccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCce-------EEEEeCEEEECC
Confidence            34688999999999999999875  77889999999875322 223355543110112321       589999999999


Q ss_pred             cCCchhhHHH
Q psy9487          88 GCHGHLTKSL   97 (101)
Q Consensus        88 G~~s~l~~~l   97 (101)
                      |++|.+.++|
T Consensus       207 Ga~S~VR~~l  216 (634)
T PRK08294        207 GARSRVRKAI  216 (634)
T ss_pred             CCchHHHHhc
Confidence            9999998877

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.98  E-value=3.6e-05  Score=63.87  Aligned_cols=65  Identities=20%  Similarity=0.265  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHH----CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEA----MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~----~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...|.+.+++    .||+|++++.+++++.+++++|+||.+.+.   .+++.       ..|.|+.||+|+|..+.+
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~  198 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV  198 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence            344455555544    389999999999999864579999998641   13332       579999999999998755

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PLN02463 lycopene beta cyclase

Probab=97.98  E-value=4.6e-05  Score=61.29  Aligned_cols=65  Identities=18%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++|..|+++|.+++.+.|++++. +.|+++..+ ++. ..|.+.+               |.+++|++||+|+|..|
T Consensus       108 y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~-~~~-~~V~~~d---------------G~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        108 YGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHE-ESK-SLVVCDD---------------GVKIQASLVLDATGFSR  169 (447)
T ss_pred             ceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECcCCCc
Confidence            34589999999999999999999974 689998874 333 4577655               46899999999999999


Q ss_pred             hhh
Q psy9487          92 HLT   94 (101)
Q Consensus        92 ~l~   94 (101)
                      .+.
T Consensus       170 ~l~  172 (447)
T PLN02463        170 CLV  172 (447)
T ss_pred             Ccc
Confidence            864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.97  E-value=3.6e-05  Score=62.77  Aligned_cols=65  Identities=25%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+-..|.+++++.||+|++++.+++++.+++++|+||...+.   ++++.       ..|+|+.||+|+|..+.+
T Consensus       135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~~  199 (543)
T PRK06263        135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQL  199 (543)
T ss_pred             HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCCC
Confidence            466678888999999999999999999864445999886531   22322       579999999999998754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.96  E-value=6.7e-05  Score=58.24  Aligned_cols=63  Identities=24%  Similarity=0.210  Sum_probs=52.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++-..+.+.|.+.+++.|++++++++|.++..+ ++.+ .|.+.+                .++.|+.||+|+|+|+
T Consensus       143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~----------------g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQ----------------GEYEARTLINCAGLMS  204 (393)
T ss_pred             ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECC----------------CEEEeCEEEECCCcch
Confidence            345678899999999999999999999999999874 4444 566643                3799999999999998


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       205 ~  205 (393)
T PRK11728        205 D  205 (393)
T ss_pred             H
Confidence            4

>PTZ00367 squalene epoxidase; Provisional

Probab=97.95  E-value=6e-05  Score=62.37  Aligned_cols=87  Identities=11%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             CcEEEEhHHHHHHHHHHH---HHCCCEEecCCceeEEEEecC---CcEEEEEecccccc----------CCCCCCcCCCC
Q psy9487          11 GNYVVRLGHVVKWLGEQA---EAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIA----------KDGSPKDTFAR   74 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A---~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~----------~~g~~~~~~~~   74 (101)
                      .++.++|..|.+.|.+.+   ...+|+++++ +|++++.++.   +++.||+....+..          -+.+.......
T Consensus       124 ~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  202 (567)
T PTZ00367        124 SGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTV  202 (567)
T ss_pred             ceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCccccccccccccccccccccccc
Confidence            367889999999999887   4578999865 7888876422   25888887542100          00000111123


Q ss_pred             CeEEEccEEEEeecCCchhhHHHh
Q psy9487          75 GMELHAKVTIFAEGCHGHLTKSLS   98 (101)
Q Consensus        75 g~~i~A~~VI~A~G~~s~l~~~l~   98 (101)
                      +.+++|++||.|||.+|.+++++.
T Consensus       203 g~~~~AdLvVgADG~~S~vR~~l~  226 (567)
T PTZ00367        203 RKVATAPLVVMCDGGMSKFKSRYQ  226 (567)
T ss_pred             ceEEEeCEEEECCCcchHHHHHcc
Confidence            578999999999999999988873

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.93  E-value=6.3e-05  Score=60.72  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++-..+..+|+..|++.|++++.+++|+++..+  +..++|.+.+    ..|+       ..+|+|+.||+|+|+|+.-
T Consensus       152 vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~----~~g~-------~~~i~a~~VVnAaG~wa~~  217 (502)
T PRK13369        152 VDDARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRD----ADGE-------TRTVRARALVNAAGPWVTD  217 (502)
T ss_pred             ecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEe----CCCC-------EEEEEecEEEECCCccHHH
Confidence            567888899999999999999999999999874  3446677755    1122       1579999999999999853

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.92  E-value=6.4e-05  Score=61.65  Aligned_cols=63  Identities=22%  Similarity=0.354  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLT   94 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~   94 (101)
                      .+...|.+.+++.|++|+++++|++|+.+ +++|+||....     +++       ...|+|+ .||+|+|......
T Consensus       209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n~  272 (557)
T PRK07843        209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHNE  272 (557)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcCH
Confidence            45667778889999999999999999986 78999998753     222       1579996 6999999988863

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.92  E-value=6.1e-05  Score=58.76  Aligned_cols=71  Identities=21%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ...+..+.+.|.+++.+.|++++.++++..+.-. ++....|...+     +|+       ...++|++||.|||.+|.+
T Consensus        99 ~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~-----~g~-------~~~i~adlvIGADG~~S~V  165 (390)
T TIGR02360        99 VYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFER-----DGE-------RHRLDCDFIAGCDGFHGVS  165 (390)
T ss_pred             EeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEE-----CCe-------EEEEEeCEEEECCCCchhh
Confidence            3457888999999999999999999888777542 23334565531     121       1479999999999999999


Q ss_pred             hHHH
Q psy9487          94 TKSL   97 (101)
Q Consensus        94 ~~~l   97 (101)
                      ++++
T Consensus       166 R~~l  169 (390)
T TIGR02360       166 RASI  169 (390)
T ss_pred             HHhc
Confidence            8875

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.90  E-value=6.4e-05  Score=59.87  Aligned_cols=61  Identities=25%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++=.++.+.|++.|++.||+|+++++|+++..   +..+.|++.+                .+++|+.||+|+|+|+.
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~----------------g~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD----------------GQVTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC----------------cEEECCEEEEccccccc
Confidence            4456778889999999999999999999999864   2334577653                46999999999999964

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.89  E-value=6.6e-05  Score=62.30  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          17 LGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        17 r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      -..+.+.|.+.+++.| |++++++.|.+++.+ +++|+||...+.   .+++.       ..++|+.||+|+|.++.+
T Consensus       131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  197 (608)
T PRK06854        131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSV---RENKF-------YVFKAKAVIVATGGAAGI  197 (608)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEc---cCCcE-------EEEECCEEEECCCchhhc
Confidence            3467888889998886 999999999999985 689999975431   12221       479999999999988753

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.88  E-value=8.6e-05  Score=62.72  Aligned_cols=66  Identities=14%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCE-EecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVE-IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~-i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ++.++|..|++.|++.   .+.+ ++.+++|+++..+ ++.|. |.+.+               |.++.+++||.|||++
T Consensus       188 ~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~-~d~Vt-V~~~d---------------G~ti~aDlVVGADG~~  247 (668)
T PLN02927        188 TRVISRMTLQQILARA---VGEDVIRNESNVVDFEDS-GDKVT-VVLEN---------------GQRYEGDLLVGADGIW  247 (668)
T ss_pred             EEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEe-CCEEE-EEECC---------------CCEEEcCEEEECCCCC
Confidence            5789999999998654   4544 5678899999875 45554 66654               4579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+++
T Consensus       248 S~vR~~l  254 (668)
T PLN02927        248 SKVRNNL  254 (668)
T ss_pred             cHHHHHh
Confidence            9998776

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.87  E-value=4.9e-05  Score=59.29  Aligned_cols=68  Identities=16%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++|..|.+.|.+.+..  ..+..+++|+++..+ ++. +.|...+               |.++.+++||+|||.+|
T Consensus        99 ~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        99 QSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQ-AEE-VQVLFTD---------------GTEYRCDLLIGADGIKS  159 (414)
T ss_pred             cccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEec-CCc-EEEEEcC---------------CCEEEeeEEEECCCccH
Confidence            3468899999999887744  567889999999875 333 3455544               46799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.+.+.
T Consensus       160 ~vR~~l~  166 (414)
T TIGR03219       160 ALRDYVL  166 (414)
T ss_pred             HHHHHhc
Confidence            9988763

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.87  E-value=7.3e-05  Score=66.19  Aligned_cols=75  Identities=20%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHH---CCCEEecCCceeEEEEecC--------CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          19 HVVKWLGEQAEA---MGVEIYPGIPASEVLYHGD--------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        19 ~~d~~l~~~A~~---~Gv~i~~gt~v~~i~~~~~--------g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      .+.+.|.+.+++   .||+|++++++++++.+++        ++|+||.+.+.+ +.+|+.       ..|+|+.||+|+
T Consensus       545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILAT  616 (1167)
T PTZ00306        545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILAT  616 (1167)
T ss_pred             HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEec
Confidence            355666777665   4999999999999998631        289999987520 113432       579999999999


Q ss_pred             cCCchhhH--HHhhhC
Q psy9487          88 GCHGHLTK--SLSSRF  101 (101)
Q Consensus        88 G~~s~l~~--~l~~~~  101 (101)
                      |..+.+..  .|.++|
T Consensus       617 GGf~~N~e~~~m~~~y  632 (1167)
T PTZ00306        617 GGFSNDHTPNSLLREY  632 (1167)
T ss_pred             CCcccCccHHHHHHHh
Confidence            99988742  455444

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.87  E-value=7.4e-05  Score=59.63  Aligned_cols=59  Identities=29%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+..+|.++++++||+|+++++|.+|..+ ++.+..|++.+               +.++.|+.||+|+|..|
T Consensus       108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~---------------~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKN---------------GGEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETT---------------TEEEEESEEEE----SS
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccC---------------cccccCCEEEEecCCCC
Confidence            3456678899999999999999999999986 67788899843               37899999999999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00551 nadB L-aspartate oxidase

Probab=97.84  E-value=7e-05  Score=60.27  Aligned_cols=63  Identities=25%  Similarity=0.301  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++ .|++|++++.|++++.+ +++|.||.+.+.     +.       ...++|+.||+|+|.++.+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCC
Confidence            4677888999988 69999999999999985 789999988641     11       1479999999999999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.84  E-value=7.9e-05  Score=59.58  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++.+               |.++.|+.||.|.+....+
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~  278 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---------------GERLDADAVVSNADLHHTY  278 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence            678889999999999999999999999986 68889998865               4679999999998865544

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.83  E-value=8.6e-05  Score=59.13  Aligned_cols=62  Identities=24%  Similarity=0.303  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++ .||+|++++++++|+.+ +++|.||....     +++       ...++|+.||+|+|..+.+
T Consensus       129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~l  191 (433)
T PRK06175        129 KVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK-----DNK-------QINIYSKVTILATGGIGGL  191 (433)
T ss_pred             HHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE-----CCc-------EEEEEcCeEEEccCccccc
Confidence            466677888875 59999999999999885 78999987543     111       1479999999999987654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.83  E-value=0.00011  Score=59.61  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++-..+...++..|++.|++++.+++|+++..+ ++ .++|.+.+.   .+|+       ..+|+|+.||+|+|+|+.-
T Consensus       152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa~~  218 (508)
T PRK12266        152 VDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDT---ATGK-------RYTVRARALVNAAGPWVKQ  218 (508)
T ss_pred             cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEc---CCCC-------EEEEEcCEEEECCCccHHH
Confidence            456677788899999999999999999999874 44 456776541   1222       2579999999999999853

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.82  E-value=0.00014  Score=50.84  Aligned_cols=61  Identities=25%  Similarity=0.278  Sum_probs=46.5

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+..+.++|.+.+++.++++++++.|+++.++ ++. .-|.+.+               +.+++|+.||+|+|..+
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~---------------~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRD---------------GRTIRADRVVLATGHYS  138 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETT---------------S-EEEEEEEEE---SSC
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEe---------------cceeeeeeEEEeeeccC
Confidence            3788889999999999999999999999999997 445 5588865               35899999999999753

...

>PRK07236 hypothetical protein; Provisional

Probab=97.80  E-value=0.0001  Score=57.02  Aligned_cols=65  Identities=14%  Similarity=0.049  Sum_probs=50.1

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+..+.+.|.+..  .+++++.++.|+++..+ ++.+. |...+               |.+++|++||.|||++|.+
T Consensus        96 ~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         96 QTSWNVLYRALRAAF--PAERYHLGETLVGFEQD-GDRVT-ARFAD---------------GRRETADLLVGADGGRSTV  156 (386)
T ss_pred             ccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEec-CCeEE-EEECC---------------CCEEEeCEEEECCCCCchH
Confidence            346778888877544  35789999999999875 44433 55544               4689999999999999999


Q ss_pred             hHHH
Q psy9487          94 TKSL   97 (101)
Q Consensus        94 ~~~l   97 (101)
                      ++++
T Consensus       157 R~~l  160 (386)
T PRK07236        157 RAQL  160 (386)
T ss_pred             HHHh
Confidence            8876

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.79  E-value=0.00011  Score=60.66  Aligned_cols=64  Identities=19%  Similarity=0.393  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++.+. |+++++++.+++++.+ +++|.||...+.   .+|+.       ..++|+.||+|+|..+.+
T Consensus       134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV  198 (582)
T ss_pred             HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEECCEEEECCCCCcCC
Confidence            4667778888775 8999999999999986 789999987431   22322       579999999999998876

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.79  E-value=0.00011  Score=58.87  Aligned_cols=59  Identities=29%  Similarity=0.410  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ..+.+.|.+.+++.|++++.+ .+++++.+ +++|+||.+.                +..+.|+.||+|+|.++.+.
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~----------------g~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLD----------------GELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence            468888999999999999986 78898875 7899999873                35799999999999999763

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.79  E-value=0.00013  Score=60.35  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++. |+++++++.+++++.+ +++|.||...+.   .+|+.       ..++|+.||+|+|..+.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence            45777888888774 8999999999999986 789999987541   23332       579999999999998865

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.78  E-value=0.00022  Score=57.75  Aligned_cols=72  Identities=18%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+..++-..+.+.|++.+++.|++|+++++|+++..++++.+ .|.+.+.   .+|+       +.+++|+.||+|+|.|
T Consensus       171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~~  239 (483)
T TIGR01320       171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGGG  239 (483)
T ss_pred             CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCcc
Confidence            456788889999999999999999999999999987433333 3443320   1111       2469999999999999


Q ss_pred             chh
Q psy9487          91 GHL   93 (101)
Q Consensus        91 s~l   93 (101)
                      +.-
T Consensus       240 s~~  242 (483)
T TIGR01320       240 ALP  242 (483)
T ss_pred             hHH
Confidence            864

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.78  E-value=0.00022  Score=54.37  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|++ +-..+...+.+++.+.|++++++++|+++..+ ++. +.|.+.+                ..+.|+.||+|+|+|
T Consensus       143 ~g~v-~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~----------------g~~~a~~vV~A~G~~  203 (376)
T PRK11259        143 GGFL-RPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTAD----------------GTYEAKKLVVSAGAW  203 (376)
T ss_pred             CCEE-cHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCC----------------CEEEeeEEEEecCcc
Confidence            4554 45567777788999999999999999999885 443 4476654                369999999999998


Q ss_pred             ch
Q psy9487          91 GH   92 (101)
Q Consensus        91 s~   92 (101)
                      +.
T Consensus       204 ~~  205 (376)
T PRK11259        204 VK  205 (376)
T ss_pred             hh
Confidence            64

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.78  E-value=9e-05  Score=60.20  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.++++ .||+|++++.|++++.+ +++|.||.+.+    .+++.       ..++|+.||+|+|.++.+
T Consensus       131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~~  192 (510)
T PRK08071        131 NLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGGL  192 (510)
T ss_pred             HHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCccc
Confidence            35667777776 69999999999999985 78999998865    23332       479999999999998864

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.75  E-value=0.00014  Score=60.12  Aligned_cols=65  Identities=23%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHCC----CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMG----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~G----v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+-+.|.+++++.+    +++++++.+++++.+++++|+||.+.+.   .+++.       ..+.|+.||+|+|..+.+
T Consensus       134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  202 (589)
T PRK08641        134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII  202 (589)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence            35667777777654    8899999999999865689999998652   12221       468999999999998864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.74  E-value=0.00015  Score=59.63  Aligned_cols=64  Identities=25%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++ .|+++++++.+++++.+ +++|+||...+.   .+++.       ..++|+.||+|+|..+.+
T Consensus       138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence            366777888876 69999999999999986 789999987531   12221       468999999999998765

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.73  E-value=0.00013  Score=61.25  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=49.7

Q ss_pred             EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          14 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .++|..+.++|.+.+++. |++++. +.|.+++.+ +++|.||.+.+               |..|.|+.||+|+|.++
T Consensus        96 QiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e-~grV~GV~t~d---------------G~~I~Ak~VIlATGTFL  157 (618)
T PRK05192         96 QADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVE-NGRVVGVVTQD---------------GLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             hcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEec-CCEEEEEEECC---------------CCEEECCEEEEeeCcch
Confidence            466777778887878766 899875 578999885 78999999976               56899999999999765

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.71  E-value=0.00014  Score=61.05  Aligned_cols=62  Identities=19%  Similarity=0.373  Sum_probs=51.3

Q ss_pred             EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          14 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .++|..+-++|.+.+++. |++++.+ .|.+++.++++++.||.+.+               |..+.|+.||+|+|.|.
T Consensus        92 QVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~---------------G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        92 QIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD---------------GLKFRAKAVIITTGTFL  154 (617)
T ss_pred             hCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---------------CCEEECCEEEEccCccc
Confidence            667777788988888888 7888876 67888764467999999976               46899999999999995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.71  E-value=0.00012  Score=59.44  Aligned_cols=62  Identities=26%  Similarity=0.436  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++. ||+|++++.|++++.+ +++|+||.+.+.     +.       -..++|+.||+|+|..+.+
T Consensus       137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~-----~~-------~~~i~Ak~VVLATGG~~~~  199 (513)
T PRK07512        137 AIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATA-----GG-------PVVLPARAVVLATGGIGGL  199 (513)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeC-----Ce-------EEEEECCEEEEcCCCCcCC
Confidence            5777888888875 9999999999999885 789999987641     11       1369999999999998754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.69  E-value=0.00022  Score=55.43  Aligned_cols=65  Identities=14%  Similarity=0.216  Sum_probs=48.3

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +-..+.+.|.+.|++.|++|+++++|+++..+ ++.+. +.+.+.    ++.+      +.+++|+.||+|+|+|+.
T Consensus       195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~~----~~~~------~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVV-LTVQPS----AEHP------SRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEcC----CCCc------cceEecCEEEECCCcChH
Confidence            44578888899999999999999999999874 45443 444331    0000      146999999999999974

>PLN02815 L-aspartate oxidase

Probab=97.64  E-value=0.00019  Score=59.71  Aligned_cols=65  Identities=25%  Similarity=0.372  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHC-CCEEecCCceeEEEEecCC---cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g---~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++. |++|++++.+++++.++++   +|+||.+.+.   .+|+.       ..|.|+.||+|+|..+.+
T Consensus       156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDT---RTGEV-------VRFISKVTLLASGGAGHI  224 (594)
T ss_pred             HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEc---CCCeE-------EEEEeceEEEcCCcceee
Confidence            4667788888775 9999999999999986444   3999987531   23332       578999999999988754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.64  E-value=0.0003  Score=56.83  Aligned_cols=67  Identities=31%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeE-EEccEEEEeec
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME-LHAKVTIFAEG   88 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~-i~A~~VI~A~G   88 (101)
                      ..+.+++=..+...|++.|++.|+++..+++|++|..++|| +.-+.+..               |.+ ++|+.||.|+|
T Consensus       145 p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AG  208 (429)
T COG0579         145 PSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAG  208 (429)
T ss_pred             CCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCc
Confidence            35788888899999999999999999999999999986454 55455543               334 99999999999


Q ss_pred             CCch
Q psy9487          89 CHGH   92 (101)
Q Consensus        89 ~~s~   92 (101)
                      -.+-
T Consensus       209 l~Ad  212 (429)
T COG0579         209 LYAD  212 (429)
T ss_pred             hhHH
Confidence            7764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.63  E-value=0.00027  Score=58.91  Aligned_cols=65  Identities=17%  Similarity=0.290  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHC--------C-----CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487          18 GHVVKWLGEQAEAM--------G-----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI   84 (101)
Q Consensus        18 ~~~d~~l~~~A~~~--------G-----v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI   84 (101)
                      ..+.+.|.+++++.        |     ++|++++.|++++.+ +++|.||...+.   .+++.       ..|+|+.||
T Consensus       138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VV  206 (626)
T PRK07803        138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWR---ESGRF-------VLFEAPAVV  206 (626)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEcCeEE
Confidence            35667778888877        7     999999999999986 789999976531   12321       479999999


Q ss_pred             EeecCCchh
Q psy9487          85 FAEGCHGHL   93 (101)
Q Consensus        85 ~A~G~~s~l   93 (101)
                      +|+|..+.+
T Consensus       207 lATGG~~~~  215 (626)
T PRK07803        207 LATGGIGKS  215 (626)
T ss_pred             ECCCcccCC
Confidence            999987755

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.63  E-value=0.00021  Score=59.50  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++-..+.+.|++.+++ |++++++++|+++..+ ++.+. |.+.+               +..+.|+.||+|+|+|+.
T Consensus       405 v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~---------------g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        405 LCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAG---------------GTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECC---------------CcEEECCEEEECCCCCcc
Confidence            4677999999999999 9999999999999875 55554 66654               346789999999999975

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.62  E-value=0.00024  Score=57.97  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCceeEEEEec-----CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          18 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHG-----DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        18 ~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~-----~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+.+.|.+++++. |++|++++.+.+++.++     +++|+||...+.   .+++.       ..|+|+.||+|+|..+
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCC
Confidence            35777888888775 89999999999999852     379999987641   22332       5799999999999988


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      .+
T Consensus       208 ~~  209 (536)
T PRK09077        208 KV  209 (536)
T ss_pred             CC
Confidence            64

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.60  E-value=0.00041  Score=56.57  Aligned_cols=60  Identities=28%  Similarity=0.360  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ....+-+.+..+++|++|++.|.|.++.++ ++.+.+|.+.+               |.+|.++.||+|-|..+.-
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~d  232 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK---------------GEEIEADYVVLAPGRSGRD  232 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccC---------------CcEEecCEEEEccCcchHH
Confidence            456677899999999999999999999995 77889999876               6799999999999987764

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.60  E-value=0.00036  Score=58.37  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|...+++.++++++++.+++++.+++  |+|+||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l  193 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV---RANEV-------HVFKAKTVIVAAGGAVNV  193 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe---CCCcE-------EEEECCEEEECCCccccc
Confidence            4556667777788899999999999998632  79999987541   23332       579999999999998754

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.59  E-value=0.00041  Score=54.01  Aligned_cols=66  Identities=17%  Similarity=0.133  Sum_probs=51.7

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ...+++|..|+++|.++++ .+..++.++.|.+|.-+ ++ ...|.+.+               |.+++|++||+|+|..
T Consensus        80 ~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~-~~-~~~v~~~~---------------g~~i~a~~VvDa~g~~  141 (374)
T PF05834_consen   80 PYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEET-GD-GVLVVLAD---------------GRTIRARVVVDARGPS  141 (374)
T ss_pred             ceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEec-Cc-eEEEEECC---------------CCEEEeeEEEECCCcc
Confidence            4569999999999999999 45567777899999764 33 34456655               5689999999999977


Q ss_pred             chhh
Q psy9487          91 GHLT   94 (101)
Q Consensus        91 s~l~   94 (101)
                      +...
T Consensus       142 ~~~~  145 (374)
T PF05834_consen  142 SPKA  145 (374)
T ss_pred             cccc
Confidence            7643

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.57  E-value=0.00043  Score=54.59  Aligned_cols=63  Identities=21%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ..+-+.|.+.+++.|++|+++++|++|..++++++++|++.+    ..++.      -.++.|+.||+|.-.+
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~------~~~~~a~~VI~a~p~~  275 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQR------RFEVTADAYVSAMPVD  275 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCc------eeEEECCEEEEcCCHH
Confidence            456778899999999999999999999875567899999854    11110      0269999999998654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.54  E-value=0.00042  Score=52.91  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..++=..+.++|++.+++. |++|+++++|+++..   +   .|++.+                .+++|+.||+|+|+|+
T Consensus       140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~----------------g~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSR----------------GDVHADQVFVCPGADF  197 (365)
T ss_pred             eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCC----------------CcEEeCEEEECCCCCh
Confidence            3456677888999988875 999999999999853   2   566653                3578999999999986


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       198 ~  198 (365)
T TIGR03364       198 E  198 (365)
T ss_pred             h
Confidence            4

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.52  E-value=0.00024  Score=52.76  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHC-CCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          20 VVKWLGEQAEAM-GVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        20 ~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ....++..|.+. +++|++++.|++|+++ ++++++||+..+.+    +..     .-..+.++.||+|+|+-
T Consensus       194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~----~~~-----~~~~~~ak~VIlaAGai  257 (296)
T PF00732_consen  194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDND----GGV-----QRRIVAAKEVILAAGAI  257 (296)
T ss_dssp             HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETT----TSE-----EEEEEEEEEEEE-SHHH
T ss_pred             hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecC----Ccc-----eeeeccceeEEeccCCC
Confidence            334445566666 9999999999999885 36799999998732    210     01568889999999963

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG2844|consensus

Probab=97.52  E-value=0.00017  Score=61.38  Aligned_cols=67  Identities=15%  Similarity=0.239  Sum_probs=57.2

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +++=..+.+.|+..|++.||.|+++++|++|... .+...||+|.-                ..|++..||.|+|.|+..
T Consensus       183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~----------------G~iet~~~VNaaGvWAr~  245 (856)
T KOG2844|consen  183 VMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH----------------GSIETECVVNAAGVWARE  245 (856)
T ss_pred             ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC----------------cceecceEEechhHHHHH
Confidence            5666788999999999999999999999999885 56666999964                569999999999999976


Q ss_pred             hHHH
Q psy9487          94 TKSL   97 (101)
Q Consensus        94 ~~~l   97 (101)
                      -..|
T Consensus       246 Vg~m  249 (856)
T KOG2844|consen  246 VGAM  249 (856)
T ss_pred             hhhh
Confidence            5444

>KOG2820|consensus

Probab=97.49  E-value=0.00055  Score=54.34  Aligned_cols=67  Identities=25%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             CCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487           9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus         9 ~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      +.+||+=. .+-.+.|...|+++|+.|+.+..|+.+.+. +++..++|+|.+               |..++|+.+|+|.
T Consensus       145 ~~gGvi~a-~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~  208 (399)
T KOG2820|consen  145 ESGGVINA-AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTV  208 (399)
T ss_pred             ccccEeeH-HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEe
Confidence            44565544 455566799999999999999999998753 357889999987               5789999999999


Q ss_pred             cCCc
Q psy9487          88 GCHG   91 (101)
Q Consensus        88 G~~s   91 (101)
                      |+|-
T Consensus       209 GaWi  212 (399)
T KOG2820|consen  209 GAWI  212 (399)
T ss_pred             cHHH
Confidence            9985

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.49  E-value=0.00035  Score=57.50  Aligned_cols=63  Identities=27%  Similarity=0.275  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...|.+++++ .|++|++++.|++++.++ +++|+||.+.+     ++..       ..++|+.||+|+|..+.+
T Consensus       135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~~  199 (553)
T PRK07395        135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQV  199 (553)
T ss_pred             HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCccc
Confidence            456677888875 499999999999999863 38999998753     2221       468999999999987543

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.47  E-value=0.00063  Score=54.58  Aligned_cols=56  Identities=29%  Similarity=0.281  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +.+.+.|..++++.||+|++.++|.++..+ + ....+.+.+               |.+|+++.+|+|+|..
T Consensus       111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~---------------g~~i~~d~lilAtGG~  166 (408)
T COG2081         111 SPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSS---------------GETVKCDSLILATGGK  166 (408)
T ss_pred             HHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCC---------------CCEEEccEEEEecCCc
Confidence            455666799999999999999999999985 3 445567665               4589999999999943

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.44  E-value=0.00017  Score=61.36  Aligned_cols=57  Identities=12%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .++|..|++.|.++|+++||+|+++++++++.             +                ..+.+|+||.|||.+|.+
T Consensus        93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~----------------~~~~~D~VVgADG~~S~v  143 (765)
T PRK08255         93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A----------------LAADADLVIASDGLNSRI  143 (765)
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h----------------hhcCCCEEEEcCCCCHHH
Confidence            58999999999999999999999998876541             0                125789999999999999


Q ss_pred             hHHHhh
Q psy9487          94 TKSLSS   99 (101)
Q Consensus        94 ~~~l~~   99 (101)
                      .+++..
T Consensus       144 R~~~~~  149 (765)
T PRK08255        144 RTRYAD  149 (765)
T ss_pred             HHHHHh
Confidence            887653

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.41  E-value=0.0013  Score=53.49  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=54.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .++.++=..+.+.|.+.+++.| ++|+++++|+++..++++++. |.+.+.   .+|+       +.+++|+.||+|+|.
T Consensus       176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~---~~G~-------~~~i~A~~VVvaAGg  244 (494)
T PRK05257        176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDL---KTGE-------KRTVRAKFVFIGAGG  244 (494)
T ss_pred             CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEc---CCCc-------eEEEEcCEEEECCCc
Confidence            3567888899999999999987 899999999999875444443 444210   1111       136999999999999


Q ss_pred             Cchhh
Q psy9487          90 HGHLT   94 (101)
Q Consensus        90 ~s~l~   94 (101)
                      |+.--
T Consensus       245 ~s~~L  249 (494)
T PRK05257        245 GALPL  249 (494)
T ss_pred             chHHH
Confidence            98653

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.37  E-value=0.00069  Score=54.77  Aligned_cols=58  Identities=29%  Similarity=0.402  Sum_probs=48.8

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ....+.+.|.+.|++.|++|+++++|++|+.+ +|+.+++.+.+               |..+.|+.||.+...
T Consensus       222 G~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~---------------g~~~~ad~vv~~~~~  279 (487)
T COG1233         222 GMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSD---------------GENIEADAVVSNADP  279 (487)
T ss_pred             CHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccc---------------cceeccceeEecCch
Confidence            35788999999999999999999999999996 77767777654               347899999988665

>PLN02612 phytoene desaturase

Probab=97.37  E-value=0.00099  Score=54.92  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+.+.|.+..+++|++|+++++|++|..++++++++|++.+               |.++.||.||+|...
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~  364 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence            46677788888899999999999999986577788888865               467999999999753

>KOG4254|consensus

Probab=97.35  E-value=0.00035  Score=57.25  Aligned_cols=62  Identities=23%  Similarity=0.387  Sum_probs=54.9

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+...+++-|++.|++|+++..|.+|+.| +|.++||++.+               |.++++++||-=++.|-..
T Consensus       262 G~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  262 GMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF  323 (561)
T ss_pred             ChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence            35677888999999999999999999999997 79999999987               7899999999887777655

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.35  E-value=0.0012  Score=52.84  Aligned_cols=63  Identities=11%  Similarity=0.119  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ...+...|.+.+++.|++|+++++|++|+.+ ++++.+|.+.+.   .+++       +.++.||.||.+.-++
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence            6778889999999999999999999999986 678888887541   0111       2579999999997653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.35  E-value=0.0011  Score=55.45  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             CCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cC--CcEEEEEeccccccCCCCCCcCCCCCeEEEc
Q psy9487           4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GD--GSVKGIATGDVGIAKDGSPKDTFARGMELHA   80 (101)
Q Consensus         4 ~~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A   80 (101)
                      |..+.+++-|    ..+.+-|.+.+++.||+|+++++|++|.++ ++  ++|+||.+...|  +...       -....+
T Consensus       216 ~l~ft~ynqy----eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~--~~~~-------I~l~~~  282 (576)
T PRK13977        216 GLKFTKYNQY----ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNG--KEET-------IDLTED  282 (576)
T ss_pred             cccCCCCCch----hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCC--ceeE-------EEecCC
Confidence            3445555544    556777899999999999999999999985 23  689999986421  1111       134667


Q ss_pred             cEEEEeecCCchh
Q psy9487          81 KVTIFAEGCHGHL   93 (101)
Q Consensus        81 ~~VI~A~G~~s~l   93 (101)
                      |+||+|+|+....
T Consensus       283 DlVivTnGs~t~n  295 (576)
T PRK13977        283 DLVFVTNGSITES  295 (576)
T ss_pred             CEEEEeCCcCccc
Confidence            9999999976543

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00087  Score=51.09  Aligned_cols=63  Identities=22%  Similarity=0.262  Sum_probs=51.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..++=..+.+.|++.++++| +.+...+++..+..+ . ++++|++.+                .++.|+.||+|+|+|+
T Consensus       151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~----------------g~i~a~~vv~a~G~~~  212 (387)
T COG0665         151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG----------------GTIEADKVVLAAGAWA  212 (387)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC----------------ccEEeCEEEEcCchHH
Confidence            34455678889999999999 566668899998764 4 888899976                4499999999999997


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      ..
T Consensus       213 ~~  214 (387)
T COG0665         213 GE  214 (387)
T ss_pred             HH
Confidence            64

>KOG1298|consensus

Probab=97.33  E-value=0.00052  Score=55.48  Aligned_cols=75  Identities=28%  Similarity=0.503  Sum_probs=61.0

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      |-..+-.+|.+-|.++|.. -+|++.+| +|.+++-| ++.|+||+..+    +.|+.       .+..|.++|++||+.
T Consensus       141 GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee-~gvvkGV~yk~----k~gee-------~~~~ApLTvVCDGcf  207 (509)
T KOG1298|consen  141 GRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEE-EGVVKGVTYKN----KEGEE-------VEAFAPLTVVCDGCF  207 (509)
T ss_pred             cceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhc-cCeEEeEEEec----CCCce-------EEEecceEEEecchh
Confidence            6666777899999998866 56888887 67888775 78999999986    44443       689999999999999


Q ss_pred             chhhHHHhh
Q psy9487          91 GHLTKSLSS   99 (101)
Q Consensus        91 s~l~~~l~~   99 (101)
                      |.+.|.|..
T Consensus       208 SnlRrsL~~  216 (509)
T KOG1298|consen  208 SNLRRSLCD  216 (509)
T ss_pred             HHHHHHhcC
Confidence            999988754

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.25  E-value=0.0019  Score=52.06  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+-+.|.+.++..|.+++++++|++|.+++++++++|++.+               |.+++|+.||.....+.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p  290 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP  290 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence            4578899999999999999999999999987557899999865               56899999998665553

>TIGR01810 betA choline dehydrogenase

Probab=97.15  E-value=0.0012  Score=53.61  Aligned_cols=61  Identities=11%  Similarity=0.090  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          17 LGHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        17 r~~~d~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      |......++..|+ +.+++|++++.|++|+++ +++++||+..+.+    +.       ...+.++.||+|+|+
T Consensus       192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~----~~-------~~~~~ak~VIlaAGa  253 (532)
T TIGR01810       192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGG----RK-------EHTEANKEVILSAGA  253 (532)
T ss_pred             EEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCC----cE-------EEEEEeeeEEEccCC
Confidence            4343444455665 567999999999999996 7899999986511    11       134689999999998

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR00275 flavoprotein, HI0933 family

Probab=97.10  E-value=0.0033  Score=49.52  Aligned_cols=57  Identities=26%  Similarity=0.312  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+.+.|.+.+++.|+++++++.|+++..+ ++ ...|++.                +.++.++.||+|+|.++
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~----------------~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETS----------------GGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEEC----------------CcEEEcCEEEECCCCcc
Confidence            4677888899999999999999999999764 33 4556653                24799999999999876

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.09  E-value=0.0034  Score=49.88  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      -+.+...|..+++++||+|+++++|++|  + ++. ..+.+...              +..++|+.||+|+|..+
T Consensus        85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~--------------~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDG--------------QSTIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCC--------------ceEEecCEEEEcCCCcc
Confidence            3456667789999999999999999998  3 333 45666320              24699999999999865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.08  E-value=0.0038  Score=51.15  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ++..++-..+.+.|.+.+++ .|++++++++|+++..++++.+. |.+.+.   .+++       ..+++|+.||+|+|+
T Consensus       177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t---~~g~-------~~~i~Ad~VV~AAGa  245 (497)
T PRK13339        177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDR---NTGE-------KREQVADYVFIGAGG  245 (497)
T ss_pred             CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEec---CCCc-------eEEEEcCEEEECCCc
Confidence            46778888999999999965 59999999999999874244443 332110   0110       136999999999999


Q ss_pred             Cchh
Q psy9487          90 HGHL   93 (101)
Q Consensus        90 ~s~l   93 (101)
                      |+.-
T Consensus       246 wS~~  249 (497)
T PRK13339        246 GAIP  249 (497)
T ss_pred             chHH
Confidence            9953

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.97  E-value=0.0036  Score=54.22  Aligned_cols=63  Identities=27%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHC----CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAM----GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~----Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +-+.|.+.+++.    ++.+++.+.+.+++.+ +|+|+||...+.   .+|+.       ..|+|+.||+|+|..+.+
T Consensus       141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~  207 (897)
T PRK13800        141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL  207 (897)
T ss_pred             HHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence            334556665543    7899999899999985 789999987541   23432       579999999999998765

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.83  E-value=0.0088  Score=48.06  Aligned_cols=58  Identities=22%  Similarity=0.326  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+.|.+..++.|+++++++.|.++..+ ++++..+.+.+      ++       ...+.||.||+|+|..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRN------HG-------DIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeC------Cc-------eEEEECCEEEEeCCCc
Confidence            57778888999999999999999999885 66777665422      11       1579999999999975

>PRK07233 hypothetical protein; Provisional

Probab=96.80  E-value=0.0065  Score=46.90  Aligned_cols=56  Identities=29%  Similarity=0.364  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++.+...                +..+.|+.||+|....
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~----------------~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVD----------------GEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEeC----------------CceEECCEEEECCCHH
Confidence            467788899999999999999999999985 6677666543                3579999999998753

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.75  E-value=0.002  Score=53.87  Aligned_cols=63  Identities=24%  Similarity=0.414  Sum_probs=49.4

Q ss_pred             cEEEEhHHHHHHHHHHHHH------CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487          12 NYVVRLGHVVKWLGEQAEA------MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF   85 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~------~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~   85 (101)
                      +.---|.+.|++++.++.+      .+..|+.+ .|.+++.+++.+|+||.+.+               |..++|+.||+
T Consensus        89 AVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~---------------G~~~~a~aVVl  152 (621)
T COG0445          89 AVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD---------------GPEFHAKAVVL  152 (621)
T ss_pred             hhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC---------------CCeeecCEEEE
Confidence            4445688888888888765      46778776 77888885333699999987               78999999999


Q ss_pred             eecCC
Q psy9487          86 AEGCH   90 (101)
Q Consensus        86 A~G~~   90 (101)
                      ++|..
T Consensus       153 TTGTF  157 (621)
T COG0445         153 TTGTF  157 (621)
T ss_pred             eeccc
Confidence            99953

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.74  E-value=0.008  Score=48.44  Aligned_cols=60  Identities=23%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEec--CC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~--~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+-|.+..++.|++|+.+++|++|..++  ++  ++++|++.+    .++        +.++.||.||+|..++
T Consensus       220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~----g~~--------~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK----PEG--------KKVIKADAYVAACDVP  283 (474)
T ss_pred             hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec----CCc--------ceEEECCEEEECCChH
Confidence            356767888889999999999999999853  23  378888743    011        1468999999998865

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK02106 choline dehydrogenase; Validated

Probab=96.63  E-value=0.0045  Score=50.66  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      |......++..|+ ..+++|++++.|++|+++ +++++||+..+.+    +.       -..+.|+.||+|+|+..
T Consensus       199 R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~----~~-------~~~~~ak~VILaaGai~  262 (560)
T PRK02106        199 RWSAARAYLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGG----GR-------ETARARREVILSAGAIN  262 (560)
T ss_pred             EEChHHHhhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCC----cE-------EEEEeeeeEEEccCCCC
Confidence            3333433445554 556999999999999996 7899999987521    11       14578999999999754

>KOG0042|consensus

Probab=96.47  E-value=0.0026  Score=53.23  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHH
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL   97 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l   97 (101)
                      +++.-.++-.|...|+.+.-.++|.+++.++++++.|+++.|+   -+|+.       .+|+|+.||.|+|..+---|+|
T Consensus       224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~e-------~~I~Ak~VVNATGpfsDsIr~M  293 (680)
T KOG0042|consen  224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGKE-------YEIRAKVVVNATGPFSDSIRKM  293 (680)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCcE-------EEEEEEEEEeCCCCccHHHHhh
Confidence            4455567888999999999999999999987889999999873   35553       7899999999999987665665


Q ss_pred             hh
Q psy9487          98 SS   99 (101)
Q Consensus        98 ~~   99 (101)
                      .+
T Consensus       294 dd  295 (680)
T KOG0042|consen  294 DD  295 (680)
T ss_pred             cc
Confidence            43

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.45  E-value=0.016  Score=48.36  Aligned_cols=70  Identities=19%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~   92 (101)
                      ...+.+++.|++|++++.+.+++.++++++.+|++....   .+.+|...+..-+|  .++.+|.||+|.|....
T Consensus       511 ~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~  585 (654)
T PRK12769        511 KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH  585 (654)
T ss_pred             HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence            356789999999999999999987556899999874311   11233322222223  36999999999997653

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.41  E-value=0.012  Score=43.92  Aligned_cols=62  Identities=31%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +++......+...+...+...|.+|+++++|++|..+ +++|. |.+.+               |..+.||.||+|...
T Consensus       202 ~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~-v~~~~---------------g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  202 GGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERE-DGGVT-VTTED---------------GETIEADAVISAVPP  263 (450)
T ss_dssp             STEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEE-SSEEE-EEETT---------------SSEEEESEEEE-S-H
T ss_pred             cceeecccchhHHHHHHHhhcCceeecCCcceecccc-ccccc-ccccc---------------ceEEecceeeecCch
Confidence            4566667777777788888889999999999999996 56665 66655               468999999999654

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK07208 hypothetical protein; Provisional

Probab=96.40  E-value=0.022  Score=45.25  Aligned_cols=62  Identities=21%  Similarity=0.283  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ..+...|.+.+++.|++|+++++|++|..++++.++.+...+    .+|+       ...+.|+.||.|.-.+
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----~~g~-------~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVND----TDGT-------EETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----CCCC-------EEEEEcCEEEECCCHH
Confidence            466778899999999999999999999986444455554322    1221       1368999999986543

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.39  E-value=0.02  Score=47.10  Aligned_cols=72  Identities=22%  Similarity=0.280  Sum_probs=56.4

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .|.-|+=..+.+-|.+.+++. |++++++++|++|...+|++. -|.+.+   .++|+       ..+++|+.|.+.+|.
T Consensus       174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~---~~~~~-------~~~v~a~FVfvGAGG  242 (488)
T PF06039_consen  174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKD---LKTGE-------KREVRAKFVFVGAGG  242 (488)
T ss_pred             CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEe---cCCCC-------eEEEECCEEEECCch
Confidence            366777888999999999998 999999999999998656643 366654   13343       278999999999998


Q ss_pred             Cchh
Q psy9487          90 HGHL   93 (101)
Q Consensus        90 ~s~l   93 (101)
                      .+..
T Consensus       243 ~aL~  246 (488)
T PF06039_consen  243 GALP  246 (488)
T ss_pred             HhHH
Confidence            7754

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG1336|consensus

Probab=96.39  E-value=0.012  Score=48.17  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+-+.+.+..++.||+++.+|.+.++..+.+|+++-|.+.+               +.++.||+||+..|+...
T Consensus       256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d---------------g~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD---------------GKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------------CCEeccCeEEEeeccccc
Confidence            45566777888999999999999999987789999999987               679999999999998754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.37  E-value=0.024  Score=46.08  Aligned_cols=59  Identities=24%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .-..+-+.|.+++++.|+++++++.|.++..+ ++ ...|.+.+               +.++.++.||+|+|+..
T Consensus       264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~-~~-~~~V~~~~---------------g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPA-AG-LIEVELAN---------------GAVLKAKTVILATGARW  322 (517)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CC-eEEEEECC---------------CCEEEcCEEEECCCCCc
Confidence            44567788899999999999999999999874 33 34455543               35799999999999865

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.34  E-value=0.024  Score=44.53  Aligned_cols=57  Identities=23%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.+.+.+++.|+++++++++.++.-  ++++..+.+.+                .++.++.||+|.|....
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~----------------~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDK----------------GEYEADVVIVATGVKPN  247 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCC----------------CEEEcCEEEECcCCCcC
Confidence            34566778888999999999999999853  45666666542                46999999999997654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.34  E-value=0.011  Score=48.96  Aligned_cols=61  Identities=13%  Similarity=0.193  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      |...+.+.++.-.++|++++.|++|+++++  ++|.+|...+.   .+|+.       .+++|++||+|+|+-
T Consensus       216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~---~~g~~-------~~v~A~~vVLAagaI  278 (544)
T TIGR02462       216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDL---LSGDR-------FEIKADVYVLACGAV  278 (544)
T ss_pred             hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC---CCCcE-------EEEECCEEEEccCch
Confidence            444333333333499999999999999754  47999988762   12332       679999999999853

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.30  E-value=0.026  Score=41.25  Aligned_cols=58  Identities=31%  Similarity=0.328  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      -..+-..+.+.+++.|+++++ +.|.++..+ ++. ..|.+.+               +.+++++.+|+|+|++..
T Consensus        56 ~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~-~~v~~~~---------------~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        56 GPELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRP-FKVKTGD---------------GKEYTAKAVIIATGASAR  113 (300)
T ss_pred             hHHHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCe-eEEEeCC---------------CCEEEeCEEEECCCCCcc
Confidence            346667888899999999999 889998764 332 3355543               357999999999998764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02487 zeta-carotene desaturase

Probab=96.28  E-value=0.02  Score=47.68  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEec--CC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~--~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      |-.-+.+..++.|++|+++++|++|..+.  ++  +++||++.+     +++       +..+.||.||.|.+.+
T Consensus       297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHH
Confidence            44556888899999999999999999963  22  488998842     111       3578999999999977

>KOG2852|consensus

Probab=96.27  E-value=0.013  Score=46.11  Aligned_cols=68  Identities=13%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .-.++-..|.++|+++|++.| |+++.| .|.++.- +.+|+.+|--..    .-+       +.....+..+|+|.|+|
T Consensus       141 taqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~d-Ek~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPW  207 (380)
T KOG2852|consen  141 TAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSD-EKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPW  207 (380)
T ss_pred             cceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeec-ccccccccchhh----hcC-------ceEEeeeeEEEEecCCC
Confidence            557788899999999999977 999998 6777763 467777765431    001       13567888999999999


Q ss_pred             ch
Q psy9487          91 GH   92 (101)
Q Consensus        91 s~   92 (101)
                      ++
T Consensus       208 Ts  209 (380)
T KOG2852|consen  208 TS  209 (380)
T ss_pred             ch
Confidence            86

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=96.24  E-value=0.02  Score=43.85  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +.+.|.+.+++.|++|+++++|++|..+ ++++..+...+               |.++.||.||+|.-.
T Consensus       199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~---------------g~~~~~d~vi~a~p~  252 (419)
T TIGR03467       199 FPEPARRWLDSRGGEVRLGTRVRSIEAN-AGGIRALVLSG---------------GETLPADAVVLAVPP  252 (419)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeeeEEEEc-CCcceEEEecC---------------CccccCCEEEEcCCH
Confidence            4455777888899999999999999986 45543222222               356899999998543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK06116 glutathione reductase; Validated

Probab=96.24  E-value=0.038  Score=43.74  Aligned_cols=59  Identities=24%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.|.++..++++.+ .|.+.+               |.++.+|.||+|.|.....
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~---------------g~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED---------------GETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC---------------CcEEEeCEEEEeeCCCcCC
Confidence            3456677888999999999999999986433333 355543               4579999999999987654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.16  E-value=0.034  Score=44.68  Aligned_cols=66  Identities=21%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+++++.||++++++.++++.-+ ++++++|+...... .+|.+.+.-....++.+|.||+|.|...
T Consensus       335 ~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~-~~g~~~~~~g~~~~i~~D~VI~A~G~~p  400 (471)
T PRK12810        335 EVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTEL-GEGDFEPVEGSEFVLPADLVLLAMGFTG  400 (471)
T ss_pred             HHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEe-cCCCccccCCceEEEECCEEEECcCcCC
Confidence            467788999999999999999753 78999988653221 1221111000125799999999999654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.14  E-value=0.038  Score=42.72  Aligned_cols=56  Identities=18%  Similarity=0.188  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +...+.+..++.|+++++++++.++..+ ++. ..|.+.+               |.++.+|.||+|+|....
T Consensus       185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS---------------GRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC---------------CcEEECCEEEECcCCCcc
Confidence            4456678888999999999999999764 333 3456544               468999999999998664

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.07  E-value=0.016  Score=47.88  Aligned_cols=79  Identities=20%  Similarity=0.364  Sum_probs=60.3

Q ss_pred             CCCCCCCCC--cEEEEh-----------------HHHHHHHHHHHHH-CCCEEecCCceeEEEEecCC-cEEEEEecccc
Q psy9487           3 FGMPMNNHG--NYVVRL-----------------GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDG-SVKGIATGDVG   61 (101)
Q Consensus         3 ~~~~~~~~~--~~~v~r-----------------~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g-~v~GV~~~~~g   61 (101)
                      +|.+|+.+.  +|.+.|                 +.+-+.|.+++++ -++++++++.+.+++.+ ++ .+.||.+.+. 
T Consensus        99 ~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~-  176 (518)
T COG0029          99 LGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNR-  176 (518)
T ss_pred             cCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecC-
Confidence            677787654  255544                 4567788888877 89999999999999996 66 5559998752 


Q ss_pred             ccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          62 IAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        62 ~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                         +++       -..++|+.||+|+|.-+.|
T Consensus       177 ---~~~-------~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         177 ---NGE-------LGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             ---CCe-------EEEEecCeEEEecCCCccc
Confidence               112       2689999999999988876

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.05  E-value=0.025  Score=44.21  Aligned_cols=58  Identities=16%  Similarity=0.164  Sum_probs=43.4

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .-..++|..|.+.|.+++.. +  ++.++.|.++  +.+ .   |.+.+               |.++.|+.||+|+|..
T Consensus        82 ~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~-~---v~l~d---------------g~~~~A~~VI~A~G~~  137 (370)
T TIGR01789        82 AYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DAD-G---VDLAP---------------GTRINARSVIDCRGFK  137 (370)
T ss_pred             CceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCC-E---EEECC---------------CCEEEeeEEEECCCCC
Confidence            45789999999998866543 3  7778899988  323 2   44443               4689999999999988


Q ss_pred             ch
Q psy9487          91 GH   92 (101)
Q Consensus        91 s~   92 (101)
                      +.
T Consensus       138 s~  139 (370)
T TIGR01789       138 PS  139 (370)
T ss_pred             CC
Confidence            64

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.97  E-value=0.054  Score=42.85  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.+.+..++.|+++++++.|.++..+ ++.+. +++.+      |+       ..++.+|.||+|.|.....
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~------g~-------~~~i~~D~vi~a~G~~p~~  271 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKG------GE-------TETLTGEKVLVAVGRKPNT  271 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeC------Cc-------EEEEEeCEEEEecCCcccC
Confidence            345667788889999999999999999874 45443 44432      11       1479999999999987765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.89  E-value=0.053  Score=44.08  Aligned_cols=59  Identities=20%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ....+...|.+++++.|++++.+++|.++..+ ++ ...|.+.+               +..+.++.+|+|+|+..
T Consensus       265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~-~~-~~~v~~~~---------------g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETE-DG-LIVVTLES---------------GEVLKAKSVIVATGARW  323 (515)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEec-CC-eEEEEECC---------------CCEEEeCEEEECCCCCc
Confidence            45677788899999999999999999999764 33 23455543               35799999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.83  E-value=0.055  Score=42.23  Aligned_cols=56  Identities=21%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+..++.+.+++.||++++++.++++.-  ++. +.|.+.+               |..+.+|.||+|.|....
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~---------------g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQS---------------GETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECC---------------CCEEECCEEEECCCCChh
Confidence            3456678888899999999999999854  233 3455544               467999999999998764

>KOG2404|consensus

Probab=95.80  E-value=0.035  Score=44.47  Aligned_cols=57  Identities=23%  Similarity=0.388  Sum_probs=46.9

Q ss_pred             CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHHhhhC
Q psy9487          33 VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF  101 (101)
Q Consensus        33 v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l~~~~  101 (101)
                      ++|...+.|.+|+. ++|.|.||+..|    .+|+.       ..+.++.||+|+|..+.--+.|.++|
T Consensus       160 ~ki~~nskvv~il~-n~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey  216 (477)
T KOG2404|consen  160 VKILLNSKVVDILR-NNGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEY  216 (477)
T ss_pred             Hhhhhcceeeeeec-CCCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHh
Confidence            89999999999996 589999999886    55554       46888999999999986546666665

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.79  E-value=0.049  Score=46.68  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+++.+..++.|+++++++.++++.-  ++++.+|.+.+               |.++.+|.||.|.|....
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~d---------------G~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKD---------------GSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECC---------------CCEEEcCEEEECCCCCcC
Confidence            445677788899999999999999864  46777888765               568999999999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.79  E-value=0.058  Score=46.86  Aligned_cols=58  Identities=24%  Similarity=0.334  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ...|.+..++.||++++++.+++|.-+.++.+..|.+.+               |.++.+|.||+|.|.....
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d---------------G~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD---------------GSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC---------------CCEEEcCEEEECCCcccCc
Confidence            355678888999999999999999753234566676654               5689999999999987654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.78  E-value=0.054  Score=45.30  Aligned_cols=68  Identities=24%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s   91 (101)
                      ...++++.|++|++.+.++++..+++++|.+|++....   -+.+|...+..-+|  .++.+|.||+|.|...
T Consensus       495 e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p  567 (639)
T PRK12809        495 EVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA  567 (639)
T ss_pred             HHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence            34568899999999999999987556889988763211   01223222222222  4799999999999654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.66  E-value=0.084  Score=41.82  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...|.+.+++.|+++++++.++++..+ ++.+ .+.+.+               |.++.+|.||+|.|.....
T Consensus       217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        217 EISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGV-IVHLKS---------------GKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeE-EEEECC---------------CCEEEeCEEEEeecCCccc
Confidence            34456778888999999999999999764 3333 244432               3579999999999987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.62  E-value=0.085  Score=42.49  Aligned_cols=70  Identities=24%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCC--CeEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~--g~~i~A~~VI~A~G~~s~   92 (101)
                      ...+++++.||++++++.+.++..++++++++|++....   .+.+|...+..-+  ..++.+|.||+|.|....
T Consensus       325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  399 (467)
T TIGR01318       325 REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH  399 (467)
T ss_pred             HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence            356778899999999999999976546788888764210   0112221111111  257999999999997653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=95.62  E-value=0.021  Score=47.50  Aligned_cols=65  Identities=29%  Similarity=0.445  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+..+|.+++.+ .+++++.+..+.+++.++++.|.||...+.   .+|+.       ..++|+.||+|+|..+.+
T Consensus       139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~~  204 (562)
T COG1053         139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGRL  204 (562)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceEE
Confidence            467889999988 778999999999999875555999987762   34443       578899999999998843

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.58  E-value=0.066  Score=42.81  Aligned_cols=70  Identities=19%  Similarity=0.143  Sum_probs=46.1

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCC--CeEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~--g~~i~A~~VI~A~G~~s~   92 (101)
                      ...+++++.||+|++++.+.++.-++++++.+|++....   .+.+|...+..-+  ..++.+|.||+|.|....
T Consensus       314 ~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~  388 (449)
T TIGR01316       314 EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN  388 (449)
T ss_pred             HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence            345778899999999999999976546788888765210   0112211111101  247999999999997543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.54  E-value=0.037  Score=43.09  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=48.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+...|..|.+++.--|+...-.+..+++|++|..+.++  ....|.+.+    .+|+       +..+.|+.||+|+|.
T Consensus        89 ~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g~-------~~~~~ar~vVla~G~  157 (341)
T PF13434_consen   89 YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDGD-------GETYRARNVVLATGG  157 (341)
T ss_dssp             -SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS--------EEEEEESEEEE----
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCCC-------eeEEEeCeEEECcCC
Confidence            355789999999888888888779999999999986433  356677753    2332       478999999999996


Q ss_pred             Cchhh
Q psy9487          90 HGHLT   94 (101)
Q Consensus        90 ~s~l~   94 (101)
                      ...+-
T Consensus       158 ~P~iP  162 (341)
T PF13434_consen  158 QPRIP  162 (341)
T ss_dssp             EE---
T ss_pred             CCCCC
Confidence            65553

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.53  E-value=0.12  Score=41.24  Aligned_cols=62  Identities=19%  Similarity=0.264  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.++++..++++++..+.+.+      |+       ..++.+|.||+|.|.....
T Consensus       222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~-------~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE-------EKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc-------eEEEEeCEEEEeeCCccCC
Confidence            34566677788899999999999999752134444444322      21       1479999999999987654

>PRK12831 putative oxidoreductase; Provisional

Probab=95.49  E-value=0.069  Score=43.00  Aligned_cols=68  Identities=21%  Similarity=0.203  Sum_probs=45.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~   92 (101)
                      .++|++.|++|++.+.+.++..++++++.+|++....   .+.+|...+..-+|  .++.+|.||+|.|....
T Consensus       325 ~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~  397 (464)
T PRK12831        325 VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN  397 (464)
T ss_pred             HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence            3567889999999999999987556889888765211   01123211111112  36999999999997644

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.29  E-value=0.075  Score=32.41  Aligned_cols=39  Identities=31%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecc
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD   59 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~   59 (101)
                      .+-.++.++.++.|+++++++.++++..++++ +. |++.|
T Consensus        41 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~   79 (80)
T PF00070_consen   41 DAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED   79 (80)
T ss_dssp             HHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence            34556788889999999999999999987555 66 88765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=95.24  E-value=0.15  Score=41.44  Aligned_cols=59  Identities=22%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.++++..+ ++....|.+.+               +.++.++.||+|.|.....
T Consensus       232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       232 TLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFES---------------GKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcC---------------CCEEEcCEEEEeeCCCcCc
Confidence            34456677788899999999999999764 33334455533               3579999999999977654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG1346|consensus

Probab=95.20  E-value=0.03  Score=46.18  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+.+|-.++.++.||+++++..|.++..+ .+.++ ++++|               |.+++.|+||+|.|...
T Consensus       393 eyls~wt~ekir~~GV~V~pna~v~sv~~~-~~nl~-lkL~d---------------G~~l~tD~vVvavG~eP  449 (659)
T KOG1346|consen  393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKC-CKNLV-LKLSD---------------GSELRTDLVVVAVGEEP  449 (659)
T ss_pred             HHHHHHHHHHHHhcCceeccchhhhhhhhh-ccceE-EEecC---------------CCeeeeeeEEEEecCCC
Confidence            467899999999999999999999999875 44544 67766               78999999999999643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.16  E-value=0.15  Score=40.36  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+.+++.|+++++++.+.++..+ ++.+ .+.+.+                .++.+|.||+|.|.+...
T Consensus       200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~----------------g~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEH----------------AQLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC----------------CeEEeCEEEEeecCCcCC
Confidence            45567788889999999999999999764 4433 244322                358899999999988754

>PRK14727 putative mercuric reductase; Provisional

Probab=95.15  E-value=0.14  Score=41.19  Aligned_cols=57  Identities=26%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+..++.+..++.|+++++++.++.+..+ ++.+ -+.+.+                .++.++.||+|.|.+...
T Consensus       229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~----------------g~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        229 LLGETLTACFEKEGIEVLNNTQASLVEHD-DNGF-VLTTGH----------------GELRAEKLLISTGRHANT  285 (479)
T ss_pred             HHHHHHHHHHHhCCCEEEcCcEEEEEEEe-CCEE-EEEEcC----------------CeEEeCEEEEccCCCCCc
Confidence            34566777888999999999999999764 3332 244322                368999999999998754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.13  E-value=0.14  Score=37.36  Aligned_cols=61  Identities=20%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          21 VKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        21 d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ...+.+.+++. |+++++++.+.++.-  ++++.++.+.+.   .+++       +.++.+|.||.|+|.....
T Consensus       179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~~~~  240 (300)
T TIGR01292       179 EKILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNT---VTGE-------EEELKVDGVFIAIGHEPNT  240 (300)
T ss_pred             CHHHHHHHHhCCCeEEEeccEEEEEEc--cCcEEEEEEEec---CCCc-------eEEEEccEEEEeeCCCCCh
Confidence            44567777887 999999999999975  347777766431   1222       3689999999999976543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.11  E-value=0.19  Score=39.92  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...+.+..++.|+++++++.|.++.-+ ++.+ .+.+.+     +++       ..++.+|.||+|.|.....
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~-----gg~-------~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        214 EISKLAERALKKRGIKIKTGAKAKKVEQT-DDGV-TVTLED-----GGK-------EETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEEe-----CCe-------eEEEEeCEEEEeeCCccCC
Confidence            45667788888999999999999999764 3333 344433     011       1579999999999987654

>KOG0404|consensus

Probab=95.11  E-value=0.019  Score=43.89  Aligned_cols=55  Identities=22%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+...|.+++++-|.+|++. .|.++.++  ....-+-+..                ..+.|+.||+|+|+..
T Consensus        70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s--skpF~l~td~----------------~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   70 PELMDKMRKQSERFGTEIITE-TVSKVDLS--SKPFKLWTDA----------------RPVTADAVILATGASA  124 (322)
T ss_pred             HHHHHHHHHHHHhhcceeeee-ehhhcccc--CCCeEEEecC----------------CceeeeeEEEecccce
Confidence            455556899999999999997 57777664  4444455543                6799999999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.10  E-value=0.11  Score=42.63  Aligned_cols=58  Identities=19%  Similarity=0.294  Sum_probs=43.6

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ....+.+++.+++++.|++++ .+.|+.+..+  +....|.+.+                .++.++.+|+|+|++..
T Consensus        58 ~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~--~~~~~V~~~~----------------g~~~a~~lVlATGa~p~  115 (555)
T TIGR03143        58 TGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD--GDIKTIKTAR----------------GDYKTLAVLIATGASPR  115 (555)
T ss_pred             CHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec--CCEEEEEecC----------------CEEEEeEEEECCCCccC
Confidence            345677888899999999986 5678888763  3444566543                35899999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK14694 putative mercuric reductase; Provisional

Probab=95.09  E-value=0.16  Score=40.66  Aligned_cols=58  Identities=22%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+...+.+..++.|+++++++.+.++..+ ++. ..+.+.+                .++.++.||+|.|.....
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~----------------~~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA----------------GTLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC----------------CEEEeCEEEEccCCCCCc
Confidence            356677888889999999999999999764 333 3344432                469999999999988765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.02  E-value=0.15  Score=41.29  Aligned_cols=63  Identities=14%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCE--EecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          15 VRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~--i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .....+.++|.+.|+..|++  |.++++|+++..+ +++ +-|.+.+.    ++.       ..+..+|.||+|+|..
T Consensus       108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~----~~~-------~~~~~~d~VIvAtG~~  172 (461)
T PLN02172        108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNS----GGF-------SKDEIFDAVVVCNGHY  172 (461)
T ss_pred             CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEcC----CCc-------eEEEEcCEEEEeccCC
Confidence            45678889999999999998  9999999999874 443 44665431    111       1356789999999964

>PLN02785 Protein HOTHEAD

Probab=95.00  E-value=0.085  Score=44.00  Aligned_cols=63  Identities=11%  Similarity=0.231  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEE-----EccEEEEeec
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMEL-----HAKVTIFAEG   88 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i-----~A~~VI~A~G   88 (101)
                      |..... |...+...+++|++++.|++|+++++   ++++||+..+    .+|..       ..+     .++-||+|+|
T Consensus       220 R~saa~-l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~-------~~~~~~~~~~~eVILsAG  287 (587)
T PLN02785        220 RHTAAE-LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQ-------HQAFLSNNKGSEIILSAG  287 (587)
T ss_pred             EcCHHH-HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCce-------EEEEeecccCceEEeccc
Confidence            444444 34566678899999999999999642   3899999865    22321       222     2478999999


Q ss_pred             CCc
Q psy9487          89 CHG   91 (101)
Q Consensus        89 ~~s   91 (101)
                      +-.
T Consensus       288 ai~  290 (587)
T PLN02785        288 AIG  290 (587)
T ss_pred             ccC
Confidence            754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.92  E-value=0.2  Score=40.09  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +...+.+..++.|+++++++.+.++..+ ++.+. |...+               |.++.+|.||+|.|.....
T Consensus       220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~---------------g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        220 AAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTD---------------GRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECC---------------CcEEEecEEEEeecCCcCC
Confidence            4456677778899999999999999764 34432 44433               3579999999999987654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.85  E-value=0.096  Score=42.21  Aligned_cols=56  Identities=32%  Similarity=0.525  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCe-EEEccEEEEeecCCchh-hHHH
Q psy9487          21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHL-TKSL   97 (101)
Q Consensus        21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~-~i~A~~VI~A~G~~s~l-~~~l   97 (101)
                      -+...+..+++||+|.++++|+++.-+      +|.+.+               |. +|.++.+|-|+|..++- .+.|
T Consensus       212 ~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~---------------g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         212 SKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD---------------GEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc---------------CCeeEecCEEEEcCCCcCChhhhhc
Confidence            334455668899999999999999642      466654               23 59999999999987653 4543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=94.83  E-value=0.16  Score=38.87  Aligned_cols=53  Identities=25%  Similarity=0.403  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+..++.+..++.|+++++++.++++.   ++   +|.+.+               |.++.+|.||+|.|....
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~---------------g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILAD---------------GRTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCC---------------CCEEecCEEEEccCCChh
Confidence            356677888899999999999999873   23   355543               468999999999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02507 glutathione reductase

Probab=94.80  E-value=0.23  Score=40.42  Aligned_cols=57  Identities=21%  Similarity=0.370  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +-+++.+..++.|+++++++.|+++.-+ ++.+ .|.+.+               |.++.+|.||+|.|.....
T Consensus       246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        246 MRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDH---------------GEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECC---------------CcEEEcCEEEEeecCCCCC
Confidence            4455666788899999999999999764 3333 344432               3579999999999987654

>PRK06370 mercuric reductase; Validated

Probab=94.78  E-value=0.22  Score=39.64  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.|.++..+ ++.+ .|.+...    ++        +.++.+|.||+|.|.....
T Consensus       213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~~----~~--------~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        213 DVAAAVREILEREGIDVRLNAECIRVERD-GDGI-AVGLDCN----GG--------APEITGSHILVAVGRVPNT  273 (463)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEEeC----CC--------ceEEEeCEEEECcCCCcCC
Confidence            35567778888999999999999999764 3322 2333210    01        2579999999999977653

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.78  E-value=0.21  Score=39.69  Aligned_cols=57  Identities=23%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +...+.+..++.|+++++++.++++..+ ++. ..|.+.+               +.++.+|.||+|.|.....
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       209 MRALLARNMEGRGIRIHPQTSLTSITKT-DDG-LKVTLSH---------------GEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCe-EEEEEcC---------------CcEeecCEEEEeeCCCcCC
Confidence            3445677788899999999999999764 332 2244433               3579999999999987543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.78  E-value=0.16  Score=39.77  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+...+.+..++.|+++++++.+.++.-  ++.+  +.+.+               |.++.+|.||+|.|....
T Consensus       180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~---------------g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       180 EMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTS---------------GGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcC---------------CCEEEeCEEEECCCccCC
Confidence            4556677888899999999999999864  3443  34433               357999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=94.71  E-value=0.3  Score=38.98  Aligned_cols=58  Identities=17%  Similarity=0.060  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCC-eEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g-~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.++.++.|+++++++.++++.-+ ++....|...+               + ..+.+|.||+|.|.....
T Consensus       209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       209 ISETITEEYEKEGINVHKLSKPVKVEKT-VEGKLVIHFED---------------GKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEe-CCceEEEEECC---------------CcEEEEcCEEEEeeCCCcCc
Confidence            3456677788899999999999999764 22223355533               2 469999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.68  E-value=0.26  Score=38.89  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.++++..+ ++.+. +.. +               +.++.+|.||+|.|.....
T Consensus       199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v~-v~~-~---------------g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQVL-VVT-E---------------DETYRFDALLYATGRKPNT  255 (438)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEEE-EEE-C---------------CeEEEcCEEEEeeCCCCCc
Confidence            45556667788899999999999999763 33332 332 1               3579999999999987654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.65  E-value=0.14  Score=45.60  Aligned_cols=68  Identities=15%  Similarity=0.072  Sum_probs=50.0

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccc---cCCC------------CCCcCCCCCeEEEccEEEEee
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI---AKDG------------SPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~---~~~g------------~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      +=.++|.+.||+|.+.+.-.+++.|++|++.+++...+-.   +..|            .+.+...+..+|.|+.||+|.
T Consensus       645 eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~  724 (1028)
T PRK06567        645 EELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAI  724 (1028)
T ss_pred             HHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEec
Confidence            4467899999999999999999887679999998875430   0011            223333445789999999999


Q ss_pred             cCC
Q psy9487          88 GCH   90 (101)
Q Consensus        88 G~~   90 (101)
                      |-.
T Consensus       725 G~~  727 (1028)
T PRK06567        725 GIE  727 (1028)
T ss_pred             ccC
Confidence            954

>PRK13748 putative mercuric reductase; Provisional

Probab=94.51  E-value=0.24  Score=40.28  Aligned_cols=57  Identities=26%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...+.+..++.|++|++++.++++..+ ++.+ .+.+.+                .++.+|.||+|.|.....
T Consensus       311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~----------------~~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGH----------------GELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecC----------------CeEEeCEEEEccCCCcCC
Confidence            34456677788899999999999999764 4433 244432                369999999999987654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.38  E-value=0.2  Score=39.65  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.+.+..++.||++++++.+.++.-   +   .|.+.+               |.++.+|.+|.+.|...
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~---------------g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKD---------------GEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECC---------------CCEEEccEEEEccCCCC
Confidence            3566677888999999999999998852   2   355544               46899999999999654

>TIGR02053 MerA mercuric reductase

Probab=94.35  E-value=0.38  Score=38.23  Aligned_cols=60  Identities=20%  Similarity=0.209  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +...+.+..++.|+++++++.|+++..+ ++ ...+.+..     ++.       +.++.+|.||+|.|.....
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~-~~~v~~~~-----~~~-------~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       209 ISAAVEEALAEEGIEVVTSAQVKAVSVR-GG-GKIITVEK-----PGG-------QGEVEADELLVATGRRPNT  268 (463)
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC-EEEEEEEe-----CCC-------ceEEEeCEEEEeECCCcCC
Confidence            4456677788899999999999999764 33 33344432     011       2579999999999976653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.33  E-value=0.34  Score=38.65  Aligned_cols=62  Identities=24%  Similarity=0.326  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+...+.++.++.|++|++++.|+++.-+ ++. ..+.+..    .+|+       ..++.+|.||+|.|.....
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~----~~g~-------~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSK-VTVTVSK----KDGK-------AQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCe-EEEEEEe----cCCC-------eEEEEeCEEEECcCcccCC
Confidence            35567788888999999999999999753 333 3344431    1222       1479999999999987654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.31  E-value=0.24  Score=42.14  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccc---cCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI---AKDGSPKDTFARG--MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~---~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~   92 (101)
                      .+++++.|+++++++.+.++..++++++.+|++.....   +.+|...+..-++  .++.+|.||+|.|....
T Consensus       615 ~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~  687 (752)
T PRK12778        615 VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN  687 (752)
T ss_pred             HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence            35788999999999999999875567899888742110   1122211111112  46999999999997644

>PRK10262 thioredoxin reductase; Provisional

Probab=94.24  E-value=0.28  Score=36.95  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +...+.++.++.|+++++++.++++.-+ ++.+.+|++.+..  .+++       ..++.+|.||.+.|.....
T Consensus       187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~--~~~~-------~~~i~~D~vv~a~G~~p~~  250 (321)
T PRK10262        187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQ--NSDN-------IESLDVAGLFVAIGHSPNT  250 (321)
T ss_pred             HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcC--CCCe-------EEEEECCEEEEEeCCccCh
Confidence            4455666777899999999999999653 4567788775410  0111       2579999999999976543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=94.23  E-value=0.25  Score=39.36  Aligned_cols=69  Identities=23%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCC-cCCCCCeEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPK-DTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~-~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +..+.+++.||+|++++.+.++.-+ ++++.+|.+....   .+.+|... +.-..+.++.+|.||+|.|....
T Consensus       316 ~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        316 EEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             HHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence            3567889999999999999998764 4555667653210   00111100 00001357999999999997654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.17  E-value=0.38  Score=38.56  Aligned_cols=62  Identities=16%  Similarity=0.158  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+...+.+..++.|+++++++.++++.-+ ++.+ .+.+.+.   .+|+       +.++.+|.||+|.|....
T Consensus       216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        216 ETAKTLQKALTKQGMKFKLGSKVTGATAG-ADGV-SLTLEPA---AGGA-------AETLQADYVLVAIGRRPY  277 (466)
T ss_pred             HHHHHHHHHHHhcCCEEEECcEEEEEEEc-CCeE-EEEEEEc---CCCc-------eeEEEeCEEEEccCCccc
Confidence            35566778888999999999999999753 3332 2333210   1121       257999999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.16  E-value=0.32  Score=39.58  Aligned_cols=61  Identities=20%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++.+.+..++ .|++|++++.++++.-+ ++++.+|.+.+.   .+++       ...+.+|.||+|.|....
T Consensus       390 ~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~~-------~~~i~~D~vi~a~G~~Pn  451 (515)
T TIGR03140       390 DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR---NSGE-------EKQLDLDGVFVQIGLVPN  451 (515)
T ss_pred             hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC---CCCc-------EEEEEcCEEEEEeCCcCC
Confidence            4455666766 59999999999999753 578888887541   1222       257999999999997653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2853|consensus

Probab=93.96  E-value=0.2  Score=40.49  Aligned_cols=66  Identities=15%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEe---------cCC-------cEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH---------GDG-------SVKGIATGDVGIAKDGSPKDTFARGMELH   79 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~---------~~g-------~v~GV~~~~~g~~~~g~~~~~~~~g~~i~   79 (101)
                      +-..+.+.+.++|..+||.+..| +|++..++         +++       ++.+|.+.-    -++.       ...++
T Consensus       241 dpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m----~d~~-------~r~vk  308 (509)
T KOG2853|consen  241 DPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRM----NDAL-------ARPVK  308 (509)
T ss_pred             CHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEec----Cchh-------cCcee
Confidence            55677888899999999999987 78888775         223       333333221    0111       25799


Q ss_pred             ccEEEEeecCCchh
Q psy9487          80 AKVTIFAEGCHGHL   93 (101)
Q Consensus        80 A~~VI~A~G~~s~l   93 (101)
                      +.++|.|+|+||.-
T Consensus       309 ~al~V~aAGa~s~Q  322 (509)
T KOG2853|consen  309 FALCVNAAGAWSGQ  322 (509)
T ss_pred             EEEEEeccCccHHH
Confidence            99999999999853

>PRK09897 hypothetical protein; Provisional

Probab=93.90  E-value=0.32  Score=40.30  Aligned_cols=51  Identities=20%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             HHHHHHHCC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          24 LGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        24 l~~~A~~~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +.+.+.+.|  ++++..++|+++..+ ++.+ .|.+.+      +        +..+.||.||+|+|-.
T Consensus       113 l~~~a~~~G~~V~v~~~~~V~~I~~~-~~g~-~V~t~~------g--------g~~i~aD~VVLAtGh~  165 (534)
T PRK09897        113 LVDQARQQKFAVAVYESCQVTDLQIT-NAGV-MLATNQ------D--------LPSETFDLAVIATGHV  165 (534)
T ss_pred             HHHHHHHcCCeEEEEECCEEEEEEEe-CCEE-EEEECC------C--------CeEEEcCEEEECCCCC
Confidence            355666777  788899999999875 4443 355533      0        2579999999999963

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.32  Score=37.55  Aligned_cols=60  Identities=28%  Similarity=0.294  Sum_probs=45.1

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      .-..+-+-+.++|+..|+++.. ..|..+..+ +. ..-|++.+               +. ++|+.||+|+|+.....
T Consensus        59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~-~~-~F~v~t~~---------------~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELE-GG-PFKVKTDK---------------GT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             chHHHHHHHHHHHhhcCeEEEE-EEEEEEeec-Cc-eEEEEECC---------------Ce-EEEeEEEECcCCcccCC
Confidence            4456666679999999999998 677777653 22 56678765               34 99999999999877653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.61  E-value=0.39  Score=39.47  Aligned_cols=67  Identities=24%  Similarity=0.207  Sum_probs=42.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .++++++.|++|++++.+.++.-+ ++.+++++....-   -+.+|...+.-....++.+|.||.|.|...
T Consensus       311 ~~~~a~~~GVki~~~~~~~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p  380 (564)
T PRK12771        311 EIEEALREGVEINWLRTPVEIEGD-ENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI  380 (564)
T ss_pred             HHHHHHHcCCEEEecCCcEEEEcC-CCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence            466788899999999999999764 3444476543210   012232111100025799999999999765

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=93.59  E-value=0.63  Score=37.34  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.++.++.|+++++++.|+++.-+ ++.+ .+...+    .+|+.       .++.+|.||+|.|.....
T Consensus       225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~----~~g~~-------~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTD----ADGEA-------QTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             HHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEe----CCCce-------eEEEcCEEEEccCCccCC
Confidence            45566777888899999999999999764 3333 355433    12221       579999999999987654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=93.52  E-value=0.57  Score=38.11  Aligned_cols=54  Identities=24%  Similarity=0.318  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      .+.+-|.+.+-+.=.|..+..++++.+|.+++++++.||+..                |..++|+.||..
T Consensus       231 ~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~d  284 (438)
T PF00996_consen  231 LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGD  284 (438)
T ss_dssp             TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEE
T ss_pred             CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEEC
Confidence            368899999888889999999999999999778999999863                489999999954

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=93.49  E-value=0.41  Score=42.42  Aligned_cols=67  Identities=21%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.|++|++++...++..+++|+|.+|++....   .+.+|...+.- ++  .++.+|.||+|-|....
T Consensus       616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~-~g~~~~i~~D~Vi~AiG~~p~  687 (1006)
T PRK12775        616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMP-TGEFKDLECDTVIYALGTKAN  687 (1006)
T ss_pred             HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccC-CCceEEEEcCEEEECCCcCCC
Confidence            4578899999999999999987557899998765311   01122211111 12  36999999999997644

>PRK13984 putative oxidoreductase; Provisional

Probab=93.35  E-value=0.35  Score=39.95  Aligned_cols=67  Identities=25%  Similarity=0.339  Sum_probs=44.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc--ccCCCCCCcCCCC--CeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG--IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g--~~~~g~~~~~~~~--g~~i~A~~VI~A~G~~s~   92 (101)
                      .+++.+.||+|++++.+.++..+ ++++.+|++.+.-  .+.+|...+.+.+  ..++.+|.||+|.|....
T Consensus       469 ~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~  539 (604)
T PRK13984        469 IEEGLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD  539 (604)
T ss_pred             HHHHHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence            45567889999999999998764 7899998765310  0112321111111  257999999999998753

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=93.34  E-value=0.2  Score=40.15  Aligned_cols=56  Identities=25%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +.+.|..+-+.+|.-+.+|-+|.+..+. +++|..|-+....             -..++|+..|+|+|+
T Consensus       260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~-------------diP~~a~~~VLAsGs  315 (421)
T COG3075         260 LHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHA-------------DIPLRADFYVLASGS  315 (421)
T ss_pred             HHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccc-------------cCCCChhHeeeeccc
Confidence            4556788889999999999999999995 8999999886422             267999999999994

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.31  E-value=0.64  Score=37.07  Aligned_cols=59  Identities=20%  Similarity=0.267  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+-+.+.+..++.|+++++++.++++..+ +.. +-+.. +      ++       ..++.+|.||+|+|....+
T Consensus       212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~-~------g~-------~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEY-E------GS-------IQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEE-C------Cc-------eEEEEeCEEEEecCCccCC
Confidence            35556777888899999999999998653 332 22222 1      11       1479999999999987654

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.29  E-value=0.64  Score=37.75  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+..++.|+++++++.++++.-. ++. ..|...+               |.++.+|.||+|.|.....
T Consensus       224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~-~~v~~~~---------------g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        224 CSEKVVEYMKEQGTLFLEGVVPINIEKM-DDK-IKVLFSD---------------GTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEEeeCCCCCc
Confidence            3456677888999999999999988753 333 3355433               3568999999999987654

>KOG2614|consensus

Probab=93.25  E-value=0.14  Score=41.49  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=24.0

Q ss_pred             CeEEEccEEEEeecCCchhhHHHhhh
Q psy9487          75 GMELHAKVTIFAEGCHGHLTKSLSSR  100 (101)
Q Consensus        75 g~~i~A~~VI~A~G~~s~l~~~l~~~  100 (101)
                      |.++++|++|.|||++|.++++|.-+
T Consensus       147 g~~~~~dlligCDGa~S~Vr~~l~~~  172 (420)
T KOG2614|consen  147 GTTVKGDLLIGCDGAYSKVRKWLGFK  172 (420)
T ss_pred             CcEEEeeEEEEcCchHHHHHHHhccc
Confidence            67999999999999999999999754

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=93.04  E-value=0.4  Score=37.96  Aligned_cols=52  Identities=15%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      ...+.+.|++.+.+  ++|.++++|++|..+ ++++ .|.+.+               |..+.||.||+|.
T Consensus       225 ~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~a~  276 (463)
T PRK12416        225 LSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFAN---------------HESIQADYVVLAA  276 (463)
T ss_pred             HHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEECC
Confidence            44566666665544  689999999999985 4443 466543               3578999999996

>PTZ00058 glutathione reductase; Provisional

Probab=93.03  E-value=0.73  Score=38.34  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+..++.|+++++++.+.++.-++++.+. +...+      +        +..+.+|.||+|.|.....
T Consensus       280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------~--------~~~i~aD~VlvA~Gr~Pn~  338 (561)
T PTZ00058        280 IINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------G--------RKYEHFDYVIYCVGRSPNT  338 (561)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC------C--------CEEEECCEEEECcCCCCCc
Confidence            4455667778899999999999999753222332 22222      1        2579999999999976543

>PLN02676 polyamine oxidase

Probab=92.96  E-value=0.41  Score=38.89  Aligned_cols=54  Identities=24%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHC------CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          18 GHVVKWLGEQAEAM------GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        18 ~~~d~~l~~~A~~~------Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      ..+.+.|++...+.      +..|.++++|++|.++ ++.| -|.+.+               |.+++|+.||+|..
T Consensus       224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~---------------G~~~~a~~VIvtvP  283 (487)
T PLN02676        224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTED---------------GSVYRAKYVIVSVS  283 (487)
T ss_pred             HHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECC---------------CCEEEeCEEEEccC
Confidence            34455555544322      3689999999999986 4444 366654               46899999999975

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.96  E-value=0.14  Score=35.26  Aligned_cols=55  Identities=22%  Similarity=0.238  Sum_probs=37.8

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcE----EEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSV----KGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v----~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .++....+++++.++.+.++... .+++    ..+....     .++       +.++.++.+|+|+|..+.
T Consensus        65 ~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~-----~~~-------~~~~~~d~lviAtG~~~~  123 (201)
T PF07992_consen   65 VDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVE-----TGD-------GREIKYDYLVIATGSRPR  123 (201)
T ss_dssp             HHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEE-----TTT-------EEEEEEEEEEEESTEEEE
T ss_pred             ccccccceEEEeecccccccccc-ccccccCcccceeec-----cCC-------ceEecCCeeeecCccccc
Confidence            55667789999888999999874 4543    1121111     111       478999999999997754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=92.94  E-value=0.66  Score=31.77  Aligned_cols=61  Identities=15%  Similarity=0.262  Sum_probs=39.3

Q ss_pred             cEEEEhHHHHHHHHHHHHH------CCCEEe-cCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487          12 NYVVRLGHVVKWLGEQAEA------MGVEIY-PGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI   84 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~------~Gv~i~-~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI   84 (101)
                      .-.+.|..|.++|.+..++      .|++|. ...+|++|... ++. ..|.+.+               |..+.++.||
T Consensus        88 ~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~~d~Vv  150 (156)
T PF13454_consen   88 DDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRD-DDG-YRVVTAD---------------GQSIRADAVV  150 (156)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEc-CCc-EEEEECC---------------CCEEEeCEEE
Confidence            4456777777776655544      354443 23488888775 333 3455544               5679999999


Q ss_pred             EeecC
Q psy9487          85 FAEGC   89 (101)
Q Consensus        85 ~A~G~   89 (101)
                      +|+|-
T Consensus       151 La~Gh  155 (156)
T PF13454_consen  151 LATGH  155 (156)
T ss_pred             ECCCC
Confidence            99984

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=92.90  E-value=0.7  Score=36.01  Aligned_cols=47  Identities=21%  Similarity=0.409  Sum_probs=29.7

Q ss_pred             CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          32 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        32 Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      -+.|+++++|+++..++++++. +.+.+.   .+++       ..++.+|.||+|||.
T Consensus       293 ~~~l~~~~~v~~~~~~~~~~~~-l~~~~~---~~~~-------~~~~~~D~VilATGy  339 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDGGVR-LTLRHR---QTGE-------EETLEVDAVILATGY  339 (341)
T ss_dssp             -SEEETTEEEEEEEEES-SSEE-EEEEET---TT---------EEEEEESEEEE---E
T ss_pred             CeEEeCCCEEEEEEECCCCEEE-EEEEEC---CCCC-------eEEEecCEEEEcCCc
Confidence            4999999999999987544443 555431   1222       378999999999995

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.84  E-value=0.6  Score=37.97  Aligned_cols=61  Identities=18%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +..|.++.++ .|+++++++.+.++.-+ ++++.+|.+.+.   .+++       ..++.+|.|++|.|....
T Consensus       389 ~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~-------~~~i~~D~v~~~~G~~p~  450 (517)
T PRK15317        389 DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGE-------EHHLELEGVFVQIGLVPN  450 (517)
T ss_pred             cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCc-------EEEEEcCEEEEeECCccC
Confidence            3455555555 59999999999999763 578888887641   1232       157999999999998763

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=92.75  E-value=0.69  Score=37.08  Aligned_cols=55  Identities=22%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEE--EecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVL--YHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~--~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +++.+++++.||+++.++. +.+.  .+  ...+.|++.+      |+.       .++.++.+|+|+|+...
T Consensus        96 ~~~~~~l~~~gV~~~~g~~-~~~~~~~~--~~~v~V~~~~------g~~-------~~~~~d~lViATGs~p~  152 (466)
T PRK07845         96 ADIRARLEREGVRVIAGRG-RLIDPGLG--PHRVKVTTAD------GGE-------ETLDADVVLIATGASPR  152 (466)
T ss_pred             HHHHHHHHHCCCEEEEEEE-EEeecccC--CCEEEEEeCC------Cce-------EEEecCEEEEcCCCCCC
Confidence            3456677888999999854 2222  22  2333354432      110       37999999999999764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=92.47  E-value=0.94  Score=36.71  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+++.+..++.|++|++++.+.++... ++. ..|...+      ++.      +.++.+|.||+|.|.....
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~------~~~------~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD------STN------GIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec------CCc------ceEEEeCEEEEEecCCcCC
Confidence            4456677888899999999999988753 333 2354433      110      1479999999999976544

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.45  E-value=0.49  Score=36.55  Aligned_cols=47  Identities=17%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+++.|++++.++.|+++..+ + +.  |.+.                +.++.+|.+|+|+|+...
T Consensus        66 ~~~~~~gv~~~~~~~V~~id~~-~-~~--v~~~----------------~~~~~yd~LVlATG~~~~  112 (377)
T PRK04965         66 EFAEQFNLRLFPHTWVTDIDAE-A-QV--VKSQ----------------GNQWQYDKLVLATGASAF  112 (377)
T ss_pred             HHHHhCCCEEECCCEEEEEECC-C-CE--EEEC----------------CeEEeCCEEEECCCCCCC
Confidence            4467789999999999998764 3 32  2332                357999999999998764

>KOG2311|consensus

Probab=92.24  E-value=0.37  Score=40.42  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             EhHHHHHHHHHHHHH------CCCEEecCCceeEEEEecCC----cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487          16 RLGHVVKWLGEQAEA------MGVEIYPGIPASEVLYHGDG----SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF   85 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~------~Gv~i~~gt~v~~i~~~~~g----~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~   85 (101)
                      -|.++|+-|+++...      ...+|+++ .|.+++..+++    +|.||.+.+               |+.|+|+-||+
T Consensus       117 ~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d---------------gt~v~a~~Vil  180 (679)
T KOG2311|consen  117 LRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD---------------GTVVYAESVIL  180 (679)
T ss_pred             hHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec---------------CcEeccceEEE
Confidence            467777777777655      34677776 56666654322    499999987               78999999999


Q ss_pred             eecC
Q psy9487          86 AEGC   89 (101)
Q Consensus        86 A~G~   89 (101)
                      .+|-
T Consensus       181 TTGT  184 (679)
T KOG2311|consen  181 TTGT  184 (679)
T ss_pred             eecc
Confidence            9994

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.05  E-value=0.95  Score=36.91  Aligned_cols=60  Identities=25%  Similarity=0.262  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.++.+..+ ++. +.+...+      |+       +.++.|+.|++|.|.....
T Consensus       215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~------g~-------~~~~~ad~vLvAiGR~Pn~  274 (454)
T COG1249         215 EISKELTKQLEKGGVKILLNTKVTAVEKK-DDG-VLVTLED------GE-------GGTIEADAVLVAIGRKPNT  274 (454)
T ss_pred             HHHHHHHHHHHhCCeEEEccceEEEEEec-CCe-EEEEEec------CC-------CCEEEeeEEEEccCCccCC
Confidence            34556677777778999999999999874 333 4466543      11       1279999999999987544

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=91.96  E-value=0.86  Score=40.19  Aligned_cols=64  Identities=20%  Similarity=0.263  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +..+...+.++.++.||++++++.+.++.-  ++++.+|++...    +++       +.++.+|.|+++.|.....
T Consensus       350 ~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~----~g~-------~~~i~~D~V~va~G~~Pnt  413 (985)
T TIGR01372       350 RADVSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARN----GGA-------GQRLEADALAVSGGWTPVV  413 (985)
T ss_pred             CcchhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEec----CCc-------eEEEECCEEEEcCCcCchh
Confidence            334556678888999999999999999863  467778876531    111       3689999999999976543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=91.85  E-value=1.3  Score=36.63  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=51.8

Q ss_pred             CCCCCCCCcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCC---cEEEEEeccccccCCCCCCcCCCCCeEE
Q psy9487           4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMEL   78 (101)
Q Consensus         4 ~~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g---~v~GV~~~~~g~~~~g~~~~~~~~g~~i   78 (101)
                      .+|++..---..++.++-++|.+-|+.-+.  .|.++|+|.++...+|.   .-+.|.+.+     +|+.       .+-
T Consensus        70 dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~-------~~~  137 (531)
T PF00743_consen   70 DFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGKE-------ETE  137 (531)
T ss_dssp             TS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTEE-------EEE
T ss_pred             CcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCeE-------EEE
Confidence            355555433356889999999999999886  68999999999875442   234466543     2221       344


Q ss_pred             EccEEEEeecCCc
Q psy9487          79 HAKVTIFAEGCHG   91 (101)
Q Consensus        79 ~A~~VI~A~G~~s   91 (101)
                      ..|.||+|+|-.+
T Consensus       138 ~fD~VvvatG~~~  150 (531)
T PF00743_consen  138 EFDAVVVATGHFS  150 (531)
T ss_dssp             EECEEEEEE-SSS
T ss_pred             EeCeEEEcCCCcC
Confidence            5799999999875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02546 glutathione reductase

Probab=91.75  E-value=1.4  Score=36.59  Aligned_cols=56  Identities=21%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .++.++.++.|+++++++.+.++.-++++.+ .+.+.+               +....+|.||+|.|.....
T Consensus       297 ~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~---------------g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        297 DFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK---------------GTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC---------------eEEEecCEEEEeeccccCC
Confidence            4566778889999999999999975323433 344432               2344589999999987654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=91.58  E-value=0.92  Score=36.01  Aligned_cols=53  Identities=9%  Similarity=0.061  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++.|+++++++.++++.   +.   .|.+.+               |.++.+|.||+|.|....
T Consensus       190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~---~~---~v~~~~---------------g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        190 DMNQPILDELDKREIPYRLNEEIDAIN---GN---EVTFKS---------------GKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HHHHHHHHHHHhcCCEEEECCeEEEEe---CC---EEEECC---------------CCEEEeCEEEECcCCCcC
Confidence            345667788889999999999999984   22   344433               357899999999997754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.56  E-value=0.47  Score=40.78  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+..++.|++++++++|+.|..+ + +  -|.+.+               |.++.+|.+|+|+|+...
T Consensus        61 ~~~~~~~gv~~~~g~~V~~Id~~-~-k--~V~~~~---------------g~~~~yD~LVlATGs~p~  109 (785)
T TIGR02374        61 KDWYEKHGITLYTGETVIQIDTD-Q-K--QVITDA---------------GRTLSYDKLILATGSYPF  109 (785)
T ss_pred             HHHHHHCCCEEEcCCeEEEEECC-C-C--EEEECC---------------CcEeeCCEEEECCCCCcC
Confidence            34567789999999999999763 3 2  244543               467999999999998754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=91.55  E-value=1.3  Score=33.39  Aligned_cols=59  Identities=25%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEE--EEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~G--V~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+...+.+..++.|+++++++.+.++..+ ++....  +...+               +..+++|+++++.|....
T Consensus       178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~---------------~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         178 PEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGID---------------GEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeC---------------CcEEEeeEEEEeeccccc
Confidence            568888999999999999999999999874 344333  23332               478999999999998773

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=91.43  E-value=0.56  Score=36.84  Aligned_cols=53  Identities=11%  Similarity=0.083  Sum_probs=36.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE--ccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~--A~~VI~A~G~~s~   92 (101)
                      ..+..++.|++++.++.|++|..+ + +.+-+....     +         +.++.  +|.+|+|+|+...
T Consensus        62 ~~~~~~~~gv~~~~~~~V~~id~~-~-~~v~~~~~~-----~---------~~~~~~~yd~lviAtG~~~~  116 (444)
T PRK09564         62 TPEEFIKSGIDVKTEHEVVKVDAK-N-KTITVKNLK-----T---------GSIFNDTYDKLMIATGARPI  116 (444)
T ss_pred             CHHHHHHCCCeEEecCEEEEEECC-C-CEEEEEECC-----C---------CCEEEecCCEEEECCCCCCC
Confidence            346677889999999999999764 3 323233211     1         23444  9999999999753

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=91.19  E-value=0.52  Score=36.00  Aligned_cols=49  Identities=14%  Similarity=0.083  Sum_probs=36.2

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+.+++.|++++.+ +|++|..+ + +  .|.+.+               |.++..|.+|+|+|+...
T Consensus        60 ~~~~~~~~gv~~~~~-~v~~id~~-~-~--~V~~~~---------------g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        60 LRRLARQAGARFVIA-EATGIDPD-R-R--KVLLAN---------------RPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             HHHHHHhcCCEEEEE-EEEEEecc-c-C--EEEECC---------------CCcccccEEEEccCCCCC
Confidence            456677889999886 78888764 3 3  355544               457999999999998754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=91.10  E-value=2  Score=33.40  Aligned_cols=56  Identities=20%  Similarity=0.238  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHCCC-EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          17 LGHVVKWLGEQAEAMGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv-~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +.=+.+++..-++.++. +|+++++|++|..+ ++. +.|.+.+               |.++.+|.||+|.-.
T Consensus       217 ~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~~d~vI~a~p~  273 (451)
T PRK11883        217 KGGLQSLIEALEEKLPAGTIHKGTPVTKIDKS-GDG-YEIVLSN---------------GGEIEADAVIVAVPH  273 (451)
T ss_pred             ccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECCCH
Confidence            33344443444444444 89999999999885 443 3455543               457999999999553

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=91.10  E-value=0.69  Score=38.22  Aligned_cols=58  Identities=14%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             HHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++..|.+. +..|++++.|+.|+++ ++++++|+....+   .++.      -..+.++.||+++|+..
T Consensus       208 ~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~---~~~~------~~~~a~~~viL~AGai~  266 (542)
T COG2303         208 YLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGD---GGTI------ETAVAAREVVLAAGAIN  266 (542)
T ss_pred             cchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCC---CCce------EEEecCceEEEeccccC
Confidence            34445554 4999999999999996 7899999987521   1111      14567889999999765

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=91.03  E-value=0.69  Score=36.06  Aligned_cols=45  Identities=13%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .++.|++++.++.|..+..+ + +  .|.+.+               |.++.+|.+|+|+|+..
T Consensus        68 ~~~~~i~~~~g~~V~~id~~-~-~--~v~~~~---------------g~~~~yd~LViATGs~~  112 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRD-T-R--ELVLTN---------------GESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECC-C-C--EEEECC---------------CCEEEcCEEEEccCCCC
Confidence            45679999999999998764 3 2  234433               45799999999999875

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=91.01  E-value=0.28  Score=42.54  Aligned_cols=55  Identities=22%  Similarity=0.410  Sum_probs=46.1

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..|....+++|+.++++....++.-  ++++.+|+..|               |..+.|+.||.|+|....+
T Consensus       191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G~~i~ad~VV~a~GIrPn~  245 (793)
T COG1251         191 RLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------GTEIPADLVVMAVGIRPND  245 (793)
T ss_pred             HHHHHHHHhhcceeecccchhhhhc--CcceeeEeecC---------------CCcccceeEEEeccccccc
Confidence            3566777889999999998888875  57899999877               6789999999999987554

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=90.65  E-value=1.3  Score=39.09  Aligned_cols=67  Identities=15%  Similarity=0.057  Sum_probs=43.4

Q ss_pred             HHHHHHCCCEEecCCceeEEEEec-CCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s~   92 (101)
                      .++|.+.|+++++.+.++++.-++ +++|.++++...-   -+.+|...+.. +|  .++.||.||+|.|....
T Consensus       491 ~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~-~G~e~~i~aD~VI~AiG~~p~  563 (944)
T PRK12779        491 LHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP-TGEIERVPVDLVIMALGNTAN  563 (944)
T ss_pred             HHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec-CCceEEEECCEEEEcCCcCCC
Confidence            456778899999999999997652 3478887653210   01122211111 12  57999999999997653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=90.65  E-value=2.9  Score=35.64  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=40.9

Q ss_pred             HHHHHHHHH-HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A-~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+++.+.. ++.||+|++++.|+++.-++++..+.+...+...+.++.+...+....++.+|.||+|.|.....
T Consensus       355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT  429 (659)
T ss_pred             HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence            344545443 56899999999999997542222233433220000000000001112479999999999987654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=90.64  E-value=1.4  Score=34.66  Aligned_cols=44  Identities=7%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             HHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          29 EAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        29 ~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ++++ ++|+.+++|+.|..+ ++.+ .|++.+               |.++.||.||+|.-+
T Consensus       233 ~~l~~~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       233 KRLKLTKVYKGTKVTKLSHR-GSNY-TLELDN---------------GVTVETDSVVVTAPH  277 (462)
T ss_pred             HHhccCeEEcCCeEEEEEec-CCcE-EEEECC---------------CcEEEcCEEEECCCH
Confidence            4444 799999999999885 4433 355543               357999999999654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07846 mycothione reductase; Reviewed

Probab=90.56  E-value=1.5  Score=35.07  Aligned_cols=49  Identities=18%  Similarity=0.153  Sum_probs=36.2

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.|+++++++.++++..+ ++.+ .|.+.+               +.++.+|.||+|.|.....
T Consensus       216 l~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        216 LASKRWDVRLGRNVVGVSQD-GSGV-TLRLDD---------------GSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             HHhcCeEEEeCCEEEEEEEc-CCEE-EEEECC---------------CcEeecCEEEEEECCccCc
Confidence            34578999999999999764 3333 355433               3579999999999987654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=90.38  E-value=2  Score=34.54  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=37.7

Q ss_pred             HHHHHHHHCC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          23 WLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        23 ~l~~~A~~~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+...+++.+  -+|...+.|+.+.+++++...-|.+.+.+     +        .++.|+.||+|+|..+
T Consensus        87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-----~--------~~~~a~~vV~ATG~~~  144 (443)
T COG2072          87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-----T--------GELTADFVVVATGHLS  144 (443)
T ss_pred             HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-----e--------eeEecCEEEEeecCCC
Confidence            3466777766  34455556666888766777778886511     1        2278999999999854

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=90.29  E-value=1.8  Score=33.18  Aligned_cols=69  Identities=23%  Similarity=0.355  Sum_probs=43.3

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccC---CCCCCcC--CCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK---DGSPKDT--FARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~---~g~~~~~--~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.++.++.|+++++++.+.++.-  ++++..|++.+...+.   ++.+...  -..+.++.+|.||+|.|....
T Consensus       214 ~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~  287 (352)
T PRK12770        214 KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT  287 (352)
T ss_pred             HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence            4556778899999999999999864  3567677654311000   0000000  001368999999999998764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=90.17  E-value=0.91  Score=35.58  Aligned_cols=49  Identities=12%  Similarity=0.124  Sum_probs=33.6

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE--ccEEEEeecCCch
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHGH   92 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~--A~~VI~A~G~~s~   92 (101)
                      +++.|++++.++.|+.+..+ ++.+ -+....     +         +.++.  +|.+|+|+|+...
T Consensus        54 ~~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~-----~---------~~~~~~~yd~lIiATG~~p~  104 (427)
T TIGR03385        54 IKKRGIDVKTNHEVIEVNDE-RQTV-VVRNNK-----T---------NETYEESYDYLILSPGASPI  104 (427)
T ss_pred             HHhcCCeEEecCEEEEEECC-CCEE-EEEECC-----C---------CCEEecCCCEEEECCCCCCC
Confidence            37789999999999998763 3332 233211     0         24567  9999999998653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.17  E-value=0.78  Score=40.02  Aligned_cols=49  Identities=20%  Similarity=0.206  Sum_probs=36.3

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+..++.|++++.+++|..+..+  .++  |.+.+               |.++.+|.+|+|+|++..
T Consensus        66 ~~~~~~~gI~~~~g~~V~~Id~~--~~~--V~~~~---------------G~~i~yD~LVIATGs~p~  114 (847)
T PRK14989         66 EGFYEKHGIKVLVGERAITINRQ--EKV--IHSSA---------------GRTVFYDKLIMATGSYPW  114 (847)
T ss_pred             HHHHHhCCCEEEcCCEEEEEeCC--CcE--EEECC---------------CcEEECCEEEECCCCCcC
Confidence            34556789999999999988653  232  34433               457999999999998764

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=90.09  E-value=1.3  Score=36.09  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEec---cccccCCCCCCcCC-CCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATG---DVGIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~---~~g~~~~g~~~~~~-~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      -|.+-+ ++++..| +++.....|..+... +++|+||+..   ...+. -|++.+.- -...+++|..||+++|.-+-.
T Consensus       154 pFvr~~-re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~-RG~~SSR~~~GdFef~A~aviv~SGGIGGn  230 (552)
T COG3573         154 PFVRRL-REAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVE-RGQPSSREVVGDFEFSASAVIVASGGIGGN  230 (552)
T ss_pred             HHHHHH-HHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccc-cCCCccceeecceEEeeeeEEEecCCcCCC
Confidence            455553 4444455 999999999999985 8999999743   11111 12222111 112479999999999976655

>PLN02268 probable polyamine oxidase

Probab=90.01  E-value=1.1  Score=35.16  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      .+++|+++++|++|..+ ++.+. |.+.+               |..+.|+.||+|.
T Consensus       209 ~~~~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~VIva~  248 (435)
T PLN02268        209 KGLDIRLNHRVTKIVRR-YNGVK-VTVED---------------GTTFVADAAIIAV  248 (435)
T ss_pred             ccCceeCCCeeEEEEEc-CCcEE-EEECC---------------CcEEEcCEEEEec
Confidence            47789999999999986 44433 55543               3579999999995

>TIGR03452 mycothione_red mycothione reductase

Probab=90.01  E-value=1.7  Score=34.74  Aligned_cols=49  Identities=20%  Similarity=0.170  Sum_probs=35.8

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.|+++++++.++++..+ ++.+ .|.+.+               |.++.+|.||+|.|.....
T Consensus       219 ~~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       219 IAKKKWDIRLGRNVTAVEQD-GDGV-TLTLDD---------------GSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             HHhcCCEEEeCCEEEEEEEc-CCeE-EEEEcC---------------CCEEEcCEEEEeeccCcCC
Confidence            34579999999999999764 3433 344433               3579999999999977643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=89.92  E-value=1.8  Score=34.36  Aligned_cols=52  Identities=23%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+.+.+..++.|++++.+ ++..+  + ... +.|.. +               |.+++++.||+|+|+...
T Consensus        92 ~~~~~~~~l~~~gV~~~~g-~~~~v--~-~~~-v~v~~-~---------------g~~~~~d~lIiATGs~p~  143 (446)
T TIGR01424        92 LSGLYKRLLANAGVELLEG-RARLV--G-PNT-VEVLQ-D---------------GTTYTAKKILIAVGGRPQ  143 (446)
T ss_pred             HHHHHHHHHHhCCcEEEEE-EEEEe--c-CCE-EEEec-C---------------CeEEEcCEEEEecCCcCC
Confidence            3445566778899999987 44444  2 222 22221 1               357999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=89.74  E-value=1.8  Score=34.70  Aligned_cols=53  Identities=19%  Similarity=0.098  Sum_probs=31.8

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+..+..||+++.++. ..+..++++..+.|...+               +.+++++.+|+|+|+..
T Consensus       105 ~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~v~v~~~~---------------~~~~~~d~lViATGs~p  157 (475)
T PRK06327        105 GIEGLFKKNKITVLKGRG-SFVGKTDAGYEIKVTGED---------------ETVITAKHVIIATGSEP  157 (475)
T ss_pred             HHHHHHHhCCCEEEEEEE-EEecCCCCCCEEEEecCC---------------CeEEEeCEEEEeCCCCC
Confidence            344455668999998753 333222223333332111               25799999999999876

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=89.66  E-value=1.5  Score=35.07  Aligned_cols=48  Identities=19%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +++....++.||+++.++.+.   . +++.   |.+.                +..+.++.||+|+|+...
T Consensus        95 ~~~~~~l~~~gv~~~~g~~~~---~-~~~~---v~v~----------------~~~~~~d~vIiAtGs~p~  142 (450)
T TIGR01421        95 GIYQKNLEKNKVDVIFGHARF---T-KDGT---VEVN----------------GRDYTAPHILIATGGKPS  142 (450)
T ss_pred             HHHHHHHHhCCCEEEEEEEEE---c-cCCE---EEEC----------------CEEEEeCEEEEecCCCCC
Confidence            345666778899999997542   2 2333   2332                357999999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=89.52  E-value=2.2  Score=35.96  Aligned_cols=67  Identities=21%  Similarity=0.175  Sum_probs=40.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcE--EEEEeccccccCCCCCCcCCCCC--eEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARG--MELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v--~GV~~~~~g~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s   91 (101)
                      ..+++.+.|++|++++.+.++.-+ ++++  ..++......+.+|...+..-.|  ..+.+|.||+|.|...
T Consensus       367 ei~~a~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p  437 (652)
T PRK12814        367 EIEEALAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQV  437 (652)
T ss_pred             HHHHHHHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcC
Confidence            356777889999999999998764 4543  33333221111222221111112  3699999999999753

>PRK10262 thioredoxin reductase; Provisional

Probab=88.87  E-value=3  Score=31.37  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      -..+-+.+.+.+...+++++.+ .|.++..+ ++. ..+....                ..+.++.||+|+|++..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~-~~~-~~v~~~~----------------~~~~~d~vilAtG~~~~  118 (321)
T PRK10262         62 GPLLMERMHEHATKFETEIIFD-HINKVDLQ-NRP-FRLTGDS----------------GEYTCDALIIATGASAR  118 (321)
T ss_pred             HHHHHHHHHHHHHHCCCEEEee-EEEEEEec-CCe-EEEEecC----------------CEEEECEEEECCCCCCC
Confidence            3455667788888899988876 56677653 333 2233321                36899999999999754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.45  E-value=2.1  Score=34.40  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+++.||+++.++..   ..  +.+.+.|...+      |+       ..++.+|.+|+|+|+...
T Consensus       101 ~~~~~~gV~~~~g~a~---~~--~~~~v~v~~~~------g~-------~~~~~~d~lViATGs~p~  149 (471)
T PRK06467        101 GMAKGRKVTVVNGLGK---FT--GGNTLEVTGED------GK-------TTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHhCCCEEEEEEEE---Ec--cCCEEEEecCC------Cc-------eEEEEcCEEEEeCCCCCC
Confidence            3456789999988532   12  23333344322      21       147999999999998653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=87.98  E-value=3.3  Score=33.09  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=32.1

Q ss_pred             HHHHHCCCEEecCCceeEEEE---ecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          26 EQAEAMGVEIYPGIPASEVLY---HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~---~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +..++.|++++.+. ++.+-.   ++..+.+.|.+.+      |+       ..++++|.+|+|+|+...
T Consensus       100 ~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~------g~-------~~~~~~d~lViATGs~p~  155 (472)
T PRK05976        100 ALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETET------GE-------NEMIIPENLLIATGSRPV  155 (472)
T ss_pred             HHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCC------Cc-------eEEEEcCEEEEeCCCCCC
Confidence            44567899999985 333311   0012234455433      11       157999999999998763

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=87.81  E-value=1.3  Score=36.17  Aligned_cols=51  Identities=18%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.++..+++..+.-..+|+ ..+.+..   ..++++       .++..|+||+|+|..-.
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~-~~l~~~~---~~~~~~-------~t~~~D~vIlATGY~~~  341 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGR-YRLTLRH---HETGEL-------ETVETDAVILATGYRRA  341 (436)
T ss_pred             CCeeeccccceeeeecCCCce-EEEEEee---ccCCCc-------eEEEeeEEEEecccccC
Confidence            348999999999998764555 4455443   234554       78999999999998843

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=87.62  E-value=2.1  Score=33.92  Aligned_cols=50  Identities=6%  Similarity=0.032  Sum_probs=34.2

Q ss_pred             HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          29 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        29 ~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++.|++++.+++|.+|..+ + +.+-+...+     +++       ..++.+|.+|+|+|+...
T Consensus        69 ~~~~i~v~~~~~V~~Id~~-~-~~v~~~~~~-----~~~-------~~~~~yd~lviAtGs~~~  118 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDE-R-QTVTVLNRK-----TNE-------QFEESYDKLILSPGASAN  118 (438)
T ss_pred             HhCCCEEEeCCEEEEEECC-C-CEEEEEECC-----CCc-------EEeeecCEEEECCCCCCC
Confidence            5579999999999999764 3 333333221     111       135789999999999764

>KOG1335|consensus

Probab=87.49  E-value=4.1  Score=33.54  Aligned_cols=60  Identities=22%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+.+-.++.|.+|.++|.|.....+.||. +-|++.+   .++++.       +++.+|++.+|.|....
T Consensus       256 k~~qr~L~kQgikF~l~tkv~~a~~~~dg~-v~i~ve~---ak~~k~-------~tle~DvlLVsiGRrP~  315 (506)
T KOG1335|consen  256 KAFQRVLQKQGIKFKLGTKVTSATRNGDGP-VEIEVEN---AKTGKK-------ETLECDVLLVSIGRRPF  315 (506)
T ss_pred             HHHHHHHHhcCceeEeccEEEEeeccCCCc-eEEEEEe---cCCCce-------eEEEeeEEEEEccCccc
Confidence            344445566899999999999999875664 4466665   244543       79999999999997654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=86.92  E-value=4.6  Score=32.44  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+..++. +++++++.++++..+ ++.+ .+...+    .+++       ..++.+|.||+|.|.....
T Consensus       217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~-~~~~-~v~~~~----~~~~-------~~~i~~D~vi~a~G~~pn~  276 (471)
T PRK06467        217 IVKVFTKRIKKQ-FNIMLETKVTAVEAK-EDGI-YVTMEG----KKAP-------AEPQRYDAVLVAVGRVPNG  276 (471)
T ss_pred             HHHHHHHHHhhc-eEEEcCCEEEEEEEc-CCEE-EEEEEe----CCCc-------ceEEEeCEEEEeecccccC
Confidence            344566667777 999999999999764 3333 344432    1111       2579999999999987765

>PRK06116 glutathione reductase; Validated

Probab=86.85  E-value=3.1  Score=32.93  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+..++.|++++.++ ++.+  + ..   .|++ +               +.++.++.+|+|+|+...
T Consensus        99 ~~~~l~~~gv~~~~g~-~~~v--~-~~---~v~~-~---------------g~~~~~d~lViATGs~p~  144 (450)
T PRK06116         99 YRNGLENNGVDLIEGF-ARFV--D-AH---TVEV-N---------------GERYTADHILIATGGRPS  144 (450)
T ss_pred             HHHHHHhCCCEEEEEE-EEEc--c-CC---EEEE-C---------------CEEEEeCEEEEecCCCCC
Confidence            3444667899999885 3333  2 22   2333 3               367999999999998764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=86.55  E-value=3.6  Score=33.37  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             CCCEE-ecCCceeEEEEecCCcEEEEEeccc--cccCCCCCCcCCCCC--eEEEccEEEEeecCC
Q psy9487          31 MGVEI-YPGIPASEVLYHGDGSVKGIATGDV--GIAKDGSPKDTFARG--MELHAKVTIFAEGCH   90 (101)
Q Consensus        31 ~Gv~i-~~gt~v~~i~~~~~g~v~GV~~~~~--g~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~   90 (101)
                      .|+++ +.++.+.++.-+++++|.+|++...  .-+.+|...+..-+|  .++.+|.||+|.|..
T Consensus       349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~  413 (485)
T TIGR01317       349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV  413 (485)
T ss_pred             cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence            46654 4677888887643478999875321  111234322222222  479999999999964

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02576 protoporphyrinogen oxidase

Probab=86.27  E-value=4.2  Score=32.39  Aligned_cols=53  Identities=11%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          19 HVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        19 ~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      .+-+.|+   +.++ .+|.++++|+.|..+ ++..+.|.+..    .+|        ...+.||.||+|.
T Consensus       240 ~L~~~la---~~l~~~~i~l~~~V~~I~~~-~~~~~~v~~~~----~~g--------~~~~~ad~VI~a~  293 (496)
T PLN02576        240 TLPDALA---KRLGKDKVKLNWKVLSLSKN-DDGGYSLTYDT----PEG--------KVNVTAKAVVMTA  293 (496)
T ss_pred             HHHHHHH---HhhCcCcEEcCCEEEEEEEC-CCCcEEEEEec----CCC--------ceeEEeCEEEECC
Confidence            3444444   4455 689999999999986 44312344332    111        1369999999995

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=86.20  E-value=4  Score=32.29  Aligned_cols=52  Identities=21%  Similarity=0.157  Sum_probs=32.7

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+++.|++++.++. ..+  + .+. +.|...+      |+       ..+++++.+|+|+|+...
T Consensus        99 ~~~~~~~~~~v~~~~g~~-~~~--~-~~~-~~v~~~~------g~-------~~~~~~d~lviATGs~p~  150 (461)
T PRK05249         99 VRRGQYERNRVDLIQGRA-RFV--D-PHT-VEVECPD------GE-------VETLTADKIVIATGSRPY  150 (461)
T ss_pred             HHHHHHHHCCCEEEEEEE-EEe--c-CCE-EEEEeCC------Cc-------eEEEEcCEEEEcCCCCCC
Confidence            455667788999998853 222  2 233 2344432      11       137999999999998754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=86.16  E-value=4.8  Score=31.87  Aligned_cols=59  Identities=17%  Similarity=0.142  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+..++. +++++++.+.++..+ ++  .+|++..    .+++       +.++.+|.||+|.|.....
T Consensus       212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~-~~--~~v~~~~----~~~~-------~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        212 VSKQAQKILSKE-FKIKLGAKVTSVEKS-GD--EKVEELE----KGGK-------TETIEADYVLVATGRRPNT  270 (460)
T ss_pred             HHHHHHHHHhhc-cEEEcCCEEEEEEEc-CC--ceEEEEE----cCCc-------eEEEEeCEEEEccCCccCC
Confidence            455666677788 999999999999764 33  2233211    1111       2579999999999986554

>PLN02507 glutathione reductase

Probab=85.94  E-value=4.6  Score=32.86  Aligned_cols=50  Identities=22%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ....++.|++++.+ .+..+  + .. -+.|...+      |+       ...+.+|.+|+|+|+...
T Consensus       131 ~~~l~~~gV~~i~g-~a~~v--d-~~-~v~V~~~~------g~-------~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        131 KRLLANAGVKLYEG-EGKIV--G-PN-EVEVTQLD------GT-------KLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             HHHHHhCCcEEEEE-EEEEe--c-CC-EEEEEeCC------Cc-------EEEEEcCEEEEecCCCCC
Confidence            34456689999987 34333  1 22 23344432      21       136899999999998653

>PLN02568 polyamine oxidase

Probab=85.57  E-value=3.4  Score=34.18  Aligned_cols=49  Identities=20%  Similarity=0.238  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      |.+.|++...  +-.|+++++|+.|.++ ++.+ .|.+.+               |.++.|+.||++.
T Consensus       244 Li~~La~~L~--~~~I~ln~~V~~I~~~-~~~v-~V~~~d---------------G~~~~aD~VIvTv  292 (539)
T PLN02568        244 VIEALASVLP--PGTIQLGRKVTRIEWQ-DEPV-KLHFAD---------------GSTMTADHVIVTV  292 (539)
T ss_pred             HHHHHHhhCC--CCEEEeCCeEEEEEEe-CCeE-EEEEcC---------------CCEEEcCEEEEcC
Confidence            4455544432  3469999999999986 4433 355544               4579999999984

>PRK06370 mercuric reductase; Validated

Probab=85.50  E-value=2.8  Score=33.33  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             HHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          23 WLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        23 ~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++.+..++. |++++.++.+.   .+ +.+   |.+.                +.++.++.+|+|+|+....
T Consensus        99 ~~~~~~~~~~gv~v~~g~~~~---~~-~~~---v~v~----------------~~~~~~d~lViATGs~p~~  147 (463)
T PRK06370         99 GSEQWLRGLEGVDVFRGHARF---ES-PNT---VRVG----------------GETLRAKRIFINTGARAAI  147 (463)
T ss_pred             hHHHHHhcCCCcEEEEEEEEE---cc-CCE---EEEC----------------cEEEEeCEEEEcCCCCCCC
Confidence            444555666 99999987642   22 222   2222                2579999999999987643

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=85.44  E-value=5.7  Score=33.09  Aligned_cols=57  Identities=14%  Similarity=0.246  Sum_probs=37.8

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCC
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCH   90 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~   90 (101)
                      |.+..++.||++..+|.|++|.++.+   ..+.++.+..     +|.+.     ...+.. |+|++..|+-
T Consensus       213 l~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-----~g~~~-----~i~l~~~DlV~vT~GS~  273 (500)
T PF06100_consen  213 LIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-----DGKEE-----TIDLGPDDLVFVTNGSM  273 (500)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-----CCCee-----EEEeCCCCEEEEECCcc
Confidence            67788999999999999999998632   2455565543     33220     123333 7888877753

>KOG1399|consensus

Probab=85.36  E-value=5.1  Score=32.70  Aligned_cols=77  Identities=17%  Similarity=0.118  Sum_probs=57.2

Q ss_pred             CCCCCCCC-CcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487           3 FGMPMNNH-GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH   79 (101)
Q Consensus         3 ~~~~~~~~-~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~   79 (101)
                      +.+||.++ ..+..++..+..+|..-|++-+.  .|..+++|..+... +...+.|.+.+...   .        ..+.-
T Consensus        74 ~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~-~~gkW~V~~~~~~~---~--------~~~~i  141 (448)
T KOG1399|consen   74 SDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSI-DKGKWRVTTKDNGT---Q--------IEEEI  141 (448)
T ss_pred             CCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeec-cCCceeEEEecCCc---c--------eeEEE
Confidence            45777777 57889999999999999999885  78888888888764 31345577655211   0        14677


Q ss_pred             ccEEEEeecCCc
Q psy9487          80 AKVTIFAEGCHG   91 (101)
Q Consensus        80 A~~VI~A~G~~s   91 (101)
                      +|.|++|+|-+.
T Consensus       142 fd~VvVctGh~~  153 (448)
T KOG1399|consen  142 FDAVVVCTGHYV  153 (448)
T ss_pred             eeEEEEcccCcC
Confidence            799999999873

>PLN02546 glutathione reductase

Probab=85.06  E-value=3.2  Score=34.53  Aligned_cols=50  Identities=18%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +..++.+..++.||+++.+. ++.+  + ...   |.+ +               |.++.+|.+|+|+|+...
T Consensus       180 l~~~~~~~l~~~gV~~i~G~-a~~v--d-~~~---V~v-~---------------G~~~~~D~LVIATGs~p~  229 (558)
T PLN02546        180 LTGIYKNILKNAGVTLIEGR-GKIV--D-PHT---VDV-D---------------GKLYTARNILIAVGGRPF  229 (558)
T ss_pred             HHHHHHHHHHhCCcEEEEeE-EEEc--c-CCE---EEE-C---------------CEEEECCEEEEeCCCCCC
Confidence            44566777888999999873 3333  1 222   333 2               367999999999998764

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=84.62  E-value=3.4  Score=33.76  Aligned_cols=50  Identities=18%  Similarity=0.208  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      +.+.+-.-+++..++|+++++|++|..+ ... .++..++               |.++.||.||++
T Consensus       214 ~~~l~~al~~~l~~~i~~~~~V~~i~~~-~~~-~~~~~~~---------------g~~~~~D~VI~t  263 (444)
T COG1232         214 LQSLIEALAEKLEAKIRTGTEVTKIDKK-GAG-KTIVDVG---------------GEKITADGVIST  263 (444)
T ss_pred             HHHHHHHHHHHhhhceeecceeeEEEEc-CCc-cEEEEcC---------------CceEEcceEEEc
Confidence            3444333444555669999999999985 222 3344433               578999999998

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=83.12  E-value=5.2  Score=35.99  Aligned_cols=67  Identities=19%  Similarity=0.073  Sum_probs=39.2

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCC-CCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~-~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++|.+.||++++.+.+.++.-  ++++......-...+.+|...+.. ..+.++.+|.||.|.|....
T Consensus       713 Ele~AleeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn  780 (1019)
T PRK09853        713 EYEEALEDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD  780 (1019)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC
Confidence            35667788999999999888853  455442221100001112111000 12468999999999998654

>KOG3855|consensus

Probab=82.12  E-value=5.9  Score=32.68  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             cEEEEhHHHHHHHH---HHHHHCCCEEecCCceeEEEE------ecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccE
Q psy9487          12 NYVVRLGHVVKWLG---EQAEAMGVEIYPGIPASEVLY------HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV   82 (101)
Q Consensus        12 ~~~v~r~~~d~~l~---~~A~~~Gv~i~~gt~v~~i~~------~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~   82 (101)
                      ++++....+-..|+   -.++...++++..+.+.++.+      ++++.+.-+.+.+               |..+..++
T Consensus       144 a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~d---------------g~~~~~~L  208 (481)
T KOG3855|consen  144 AFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTD---------------GINFATDL  208 (481)
T ss_pred             eeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEecc---------------Cceeeece
Confidence            45555544444444   344557799999998887755      2356677777766               67899999


Q ss_pred             EEEeecCCchhhH
Q psy9487          83 TIFAEGCHGHLTK   95 (101)
Q Consensus        83 VI~A~G~~s~l~~   95 (101)
                      .|.|+|.+|.+.+
T Consensus       209 LigAdg~Ns~vR~  221 (481)
T KOG3855|consen  209 LIGADGFNSVVRK  221 (481)
T ss_pred             eeccccccchhhh
Confidence            9999999999854

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.16  E-value=5.8  Score=32.49  Aligned_cols=71  Identities=11%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             CCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEE--EEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487           9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus         9 ~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~G--V~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      +.+.+.+.|..+++.+.=.|..+ -.++.+++|++|-.-+.+...-  |++.+               +..++|+.+|++
T Consensus        89 ~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---------------~~~y~ar~lVlg  152 (436)
T COG3486          89 NYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---------------GTVYRARNLVLG  152 (436)
T ss_pred             hhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---------------CcEEEeeeEEEc
Confidence            45678899999999855444555 8899999999772211222332  44433               358999999999


Q ss_pred             ecCCchhhH
Q psy9487          87 EGCHGHLTK   95 (101)
Q Consensus        87 ~G~~s~l~~   95 (101)
                      .|....+-.
T Consensus       153 ~G~~P~IP~  161 (436)
T COG3486         153 VGTQPYIPP  161 (436)
T ss_pred             cCCCcCCCh
Confidence            998877643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=80.51  E-value=7.8  Score=30.71  Aligned_cols=50  Identities=22%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +....++.|++++.++. +.  .+  ...+.|...+      +        +.++++|.+|+|+|+...
T Consensus        98 ~~~~~~~~gv~~~~g~~-~~--~~--~~~~~v~~~~------~--------~~~~~~d~lViAtGs~p~  147 (462)
T PRK06416         98 VEGLLKKNKVDIIRGEA-KL--VD--PNTVRVMTED------G--------EQTYTAKNIILATGSRPR  147 (462)
T ss_pred             HHHHHHhCCCEEEEEEE-EE--cc--CCEEEEecCC------C--------cEEEEeCEEEEeCCCCCC
Confidence            44566778999998853 22  22  2223343211      1        257999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
2gmh_A	584	Structure Of Porcine Electron Transfer Flavoprotein		3e-42

>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein- Ubiquinone Oxidoreductase In Complexed With Ubiquinone Length = 584

Iteration: 1
 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)
Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI 
Sbjct: 130 GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ 189
Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 190 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	3e-50
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-15
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-06
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	7e-04

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score =  165 bits (420), Expect = 3e-50
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 4   GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 63
           G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI 
Sbjct: 130 GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ 189

Query: 64  KDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
           KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L  +F
Sbjct: 190 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 227

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 4/95 (4%)

Query: 7   MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 66
           +      +     V   +  +  A            E        + G+ T    ++   
Sbjct: 171 LQRPNVKLFNATTVEDLITRKHHAESSSSSDD---GEAEDEAKVRIAGVVTNWTLVSMHH 227

Query: 67  SPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF 101
             +        ++A V I   G  G        R 
Sbjct: 228 DDQSAM-DPNTINAPVIISTTGHDGPFGAFSVKRL 261

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 13  YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 72
           + +      + + ++A+  GVEI+    A + ++  DG VKG    +    ++       
Sbjct: 95  FELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEEL------ 147

Query: 73  ARGMELHAKVTIFAEGCHGHLTKSLSSR 100
                +++KV + A G        L   
Sbjct: 148 ----TVYSKVVVEATGYSRSFRSKLPPE 171

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 22/120 (18%)

Query: 3   FGMPMNNHGNYVVRL---GHVVKWLGEQAEAMGVEIYPGIPASEVLYH-----GDGSVKG 54
             +P  + G+YVV       +   L +  +   V+++      +++       G+ +V G
Sbjct: 129 LEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAG 188

Query: 55  IATG--------------DVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 100
           + T               D  + +    K+   R +     V +   G  G      + R
Sbjct: 189 VVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKR 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.58
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.26
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.1
3atr_A	453	Conserved archaeal protein; saturating double bond	99.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.98
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.96
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.87
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.84
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.8
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.77
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.74
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.72
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.71
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.7
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.68
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.67
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.66
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.65
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.65
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.64
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.63
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.63
3dme_A	369	Conserved exported protein; structural genomics, P	98.62
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.61
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.61
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.61
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.58
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.56
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.54
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.51
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.51
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.48
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.46
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.46
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.45
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.44
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.41
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.4
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.37
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.37
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.35
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.33
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.32
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.31
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.29
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.25
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.25
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.24
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.22
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.21
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.2
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.19
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.18
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.18
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.17
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.16
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.16
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.14
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.13
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.11
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.1
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.05
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.03
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.98
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.92
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.91
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.91
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.88
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.87
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.86
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.84
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.81
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.81
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.8
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.78
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.77
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.61
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.59
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.5
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.48
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.41
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.4
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.35
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.35
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.33
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.27
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.25
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.24
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.22
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.21
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.21
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.2
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.2
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.2
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.18
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.18
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.18
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.09
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.08
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.06
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.06
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.04
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.03
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.03
4dna_A	463	Probable glutathione reductase; structural genomic	97.02
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.01
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.01
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.99
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.99
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.98
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.96
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.95
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.94
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.91
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.89
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.88
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.82
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.77
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.76
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.76
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.74
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.73
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.69
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.68
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.67
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.65
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.63
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.6
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.58
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.54
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.54
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.53
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.52
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.5
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.47
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.46
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.43
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.39
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.29
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.27
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.26
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.24
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.23
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.18
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.18
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.14
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.12
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.1
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.09
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.09
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.05
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.02
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	95.86
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.82
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	95.75
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.69
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.68
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.68
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	95.63
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.56
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.54
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.52
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.52
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.49
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.44
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	95.44
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.42
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	95.36
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.34
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	95.33
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.32
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.32
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.31
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.23
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.13
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.08
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.9
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	94.87
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	94.78
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.76
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.73
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	94.57
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.53
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.28
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.21
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	94.17
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.16
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.05
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	93.84
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	93.79
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	93.78
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	93.76
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.72
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.72
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.69
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.67
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	93.53
3r9u_A	315	Thioredoxin reductase; structural genomics, center	93.52
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	93.22
1ojt_A	482	Surface protein; redox-active center, glycolysis,	93.09
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	93.05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.94
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.93
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.88
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	92.82
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.65
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	92.39
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	92.28
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.18
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.09
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	91.95
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	91.77
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	91.31
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	91.27
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	90.77
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	90.57
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	90.33
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	89.99
4fk1_A	304	Putative thioredoxin reductase; structural genomic	89.98
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	89.93
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	89.84
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	89.48
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	88.96
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	88.95
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	88.83
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	88.81
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	88.72
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	88.32
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	88.23
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	88.07
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.88
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	87.81
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	87.74
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	87.63
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	87.42
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	87.2
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	87.15
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	86.93
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	86.72
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	86.58
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	86.47
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	86.43
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	86.2
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	85.96
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	84.9
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	84.74
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	84.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	84.22
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	83.89
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	83.73
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	82.43
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	82.24
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	81.2
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	80.77
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	80.62
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	80.52

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.58  E-value=9.2e-15  Score=117.73  Aligned_cols=95  Identities=77%  Similarity=1.319  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487           7 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus         7 ~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      +.+.++|+++|..|++||.++|+++||+|+++++|++++.+++++|+||.+.+.|.+++|+++++|++|.+++|+.||+|
T Consensus       133 ~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~A  212 (584)
T 2gmh_A          133 MNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFA  212 (584)
T ss_dssp             TCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEEC
T ss_pred             cccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEe
Confidence            45667899999999999999999999999999999999997557899999987777778888888999999999999999


Q ss_pred             ecCCchhhHHHhhhC
Q psy9487          87 EGCHGHLTKSLSSRF  101 (101)
Q Consensus        87 ~G~~s~l~~~l~~~~  101 (101)
                      +|++|.++++|..+|
T Consensus       213 dG~~S~vr~~l~~~~  227 (584)
T 2gmh_A          213 EGCHGHLAKQLYKKF  227 (584)
T ss_dssp             CCTTCHHHHHHHHHT
T ss_pred             eCCCchHHHHHHHHh
Confidence            999999999886543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.26  E-value=3.9e-11  Score=88.56  Aligned_cols=77  Identities=23%  Similarity=0.357  Sum_probs=66.1

Q ss_pred             CCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487           9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus         9 ~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      +..+|+++|..|+++|+++|++.|++++.+++|+++..+ +++++++....     +++       ..+++|++||.|||
T Consensus        93 ~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~-----~~~-------~~~~~a~~vIgAdG  159 (397)
T 3oz2_A           93 NEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRH-----NNE-------IVDVRAKMVIAADG  159 (397)
T ss_dssp             CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEE-----TTE-------EEEEEEEEEEECCC
T ss_pred             CceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecc-----ccc-------ceEEEEeEEEeCCc
Confidence            334899999999999999999999999999999999986 78888887654     111       35799999999999


Q ss_pred             CCchhhHHHh
Q psy9487          89 CHGHLTKSLS   98 (101)
Q Consensus        89 ~~s~l~~~l~   98 (101)
                      ++|.+++++.
T Consensus       160 ~~S~vr~~~g  169 (397)
T 3oz2_A          160 FESEFGRWAG  169 (397)
T ss_dssp             TTCHHHHHHT
T ss_pred             cccHHHHHcC
Confidence            9999988763

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.00  E-value=1.4e-09  Score=84.11  Aligned_cols=76  Identities=21%  Similarity=0.289  Sum_probs=63.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +++++|..|+++|.++|++.|++|+++++|+++..+ +++++||.+.+.   .+|+       ..+++|++||+|+|.+|
T Consensus        94 ~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~---~~G~-------~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           94 GFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNR---RTNE-------ELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEET---TTTE-------EEEEECSEEEECCGGGC
T ss_pred             cEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------eEEEEcCEEEECcCCch
Confidence            689999999999999999999999999999999985 778888887531   0222       13799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.+++.
T Consensus       163 ~vr~~l~  169 (453)
T 3atr_A          163 SFRSKLP  169 (453)
T ss_dssp             TTGGGSC
T ss_pred             hhHHhcC
Confidence            9987653

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.98  E-value=1.2e-09  Score=82.52  Aligned_cols=75  Identities=23%  Similarity=0.334  Sum_probs=61.1

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+|.++|..|+++|.++|++.|++|+++++|+++..++++.++.|++.+      |+.       .+++|+.||+|+|.+
T Consensus        99 ~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~------g~~-------~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           99 WTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN------GNK-------REIEARFIIDASGYG  165 (421)
T ss_dssp             CEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETT------SCE-------EEEEEEEEEECCGGG
T ss_pred             ceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC------CCE-------EEEEcCEEEECCCCc
Confidence            4799999999999999999999999999999999986444445555543      211       379999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+.+.+.
T Consensus       166 s~l~~~~g  173 (421)
T 3nix_A          166 RVIPRMFG  173 (421)
T ss_dssp             CHHHHHTT
T ss_pred             hhhHHhcC
Confidence            98877653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.96  E-value=1.9e-09  Score=84.86  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=65.4

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+|.++|..|+++|.+.|++.|++|+++++|+++..+ ++++.+|.+..    .+|+.       .+++|++||+|+|.+
T Consensus       104 ~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~----~dG~~-------~~i~ad~VI~AdG~~  171 (512)
T 3e1t_A          104 FAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRN----TEGVE-------LMAHARFIVDASGNR  171 (512)
T ss_dssp             CEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEEC----SSSCE-------EEEEEEEEEECCCTT
T ss_pred             eeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEe----CCCCE-------EEEEcCEEEECCCcc
Confidence            4789999999999999999999999999999999985 78898888764    23321       489999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+.+++
T Consensus       172 S~vr~~l  178 (512)
T 3e1t_A          172 TRVSQAV  178 (512)
T ss_dssp             CSSGGGT
T ss_pred             hHHHHHc
Confidence            9998776

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.87  E-value=5.2e-09  Score=81.70  Aligned_cols=70  Identities=23%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+|.++|..|+++|.++|++.|++++.+ +|+++..++++.+++|++.+               |.++.|+.||+|+|.+
T Consensus       166 ~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~---------------g~~~~ad~vV~A~G~~  229 (511)
T 2weu_A          166 YAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQ---------------HGEISGDLFVDCTGFR  229 (511)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESS---------------SCEEECSEEEECCGGG
T ss_pred             eeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECC---------------CCEEEcCEEEECCCcc
Confidence            4799999999999999999999999999 99999885567888888865               4579999999999999


Q ss_pred             chhhHH
Q psy9487          91 GHLTKS   96 (101)
Q Consensus        91 s~l~~~   96 (101)
                      |.+.++
T Consensus       230 S~~~~~  235 (511)
T 2weu_A          230 GLLINQ  235 (511)
T ss_dssp             CCCCCC
T ss_pred             hHHHHH
Confidence            988543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.84  E-value=8e-09  Score=77.82  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEE-EEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVK-GIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~-GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ++.++|..|.++|.+++++. |++|+.+++|+++..+ ++.++ .|.+.+               |.+++|++||+|+|.
T Consensus       101 ~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~~---------------g~~~~ad~vV~AdG~  164 (399)
T 2x3n_A          101 FILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLND---------------GRVLRPRVVVGADGI  164 (399)
T ss_dssp             EEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEETT---------------SCEEEEEEEEECCCT
T ss_pred             cccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEECC---------------CCEEECCEEEECCCC
Confidence            68999999999999999998 9999999999999885 55554 566654               458999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+.+++
T Consensus       165 ~s~vr~~l  172 (399)
T 2x3n_A          165 ASYVRRRL  172 (399)
T ss_dssp             TCHHHHHT
T ss_pred             ChHHHHHh
Confidence            99997765

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.80  E-value=1.8e-08  Score=81.55  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=64.4

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+|.++|..|+++|.+.|++.||+++++++|+++..+ ++.+++|.+.+     +|+       ..+++|+.||+|+|.+
T Consensus       121 ~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~-----~G~-------~~~i~AdlVV~AdG~~  187 (591)
T 3i3l_A          121 HAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRR-----GGE-------SVTVESDFVIDAGGSG  187 (591)
T ss_dssp             CEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEE-----TTE-------EEEEEESEEEECCGGG
T ss_pred             eeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEec-----CCc-------eEEEEcCEEEECCCCc
Confidence            4789999999999999999999999999999999885 67788888863     111       1579999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+.+++.
T Consensus       188 S~lr~~lg  195 (591)
T 3i3l_A          188 GPISRKLG  195 (591)
T ss_dssp             CHHHHHHT
T ss_pred             chhHHHcC
Confidence            99988763

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.77  E-value=4.4e-08  Score=74.57  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=56.9

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCC---ceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGI---PASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt---~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..++-..+.+.|.+.|+++||+|++++   +|++|..+ +++++||++.+               |.+++|+.||+|+|+
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~---------------G~~i~Ad~VV~AtG~  219 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTAD---------------GKIWRAERTFLCAGA  219 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETT---------------TEEEECSEEEECCGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECC---------------CCEEECCEEEECCCC
Confidence            455667899999999999999999999   99999986 78999999976               568999999999999


Q ss_pred             Cch
Q psy9487          90 HGH   92 (101)
Q Consensus        90 ~s~   92 (101)
                      |+.
T Consensus       220 ~s~  222 (438)
T 3dje_A          220 SAG  222 (438)
T ss_dssp             GGG
T ss_pred             Chh
Confidence            985

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.74  E-value=2.5e-08  Score=79.25  Aligned_cols=68  Identities=19%  Similarity=0.254  Sum_probs=60.5

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+|.++|..|.++|.+.|++. ||+++++ +|+++..++++.+++|++.+               |.++.|+.||+|+|.
T Consensus       187 ~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~---------------G~~i~ad~vI~A~G~  250 (550)
T 2e4g_A          187 YAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTAT---------------GRVFDADLFVDCSGF  250 (550)
T ss_dssp             CEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETT---------------SCEEECSEEEECCGG
T ss_pred             cceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC---------------CCEEECCEEEECCCC
Confidence            378999999999999999999 9999999 99999886567888898865               467999999999999


Q ss_pred             Cchhh
Q psy9487          90 HGHLT   94 (101)
Q Consensus        90 ~s~l~   94 (101)
                      +|.+.
T Consensus       251 ~S~~~  255 (550)
T 2e4g_A          251 RGLLI  255 (550)
T ss_dssp             GCCCC
T ss_pred             chhhH
Confidence            99884

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.72  E-value=3.1e-08  Score=78.13  Aligned_cols=66  Identities=18%  Similarity=0.317  Sum_probs=58.4

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +|.++|..|++.|.++|++ .||+++.+ +|+++..++++.+++|.+.+               |.++.|+.||+|+|.+
T Consensus       169 ~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~---------------g~~i~ad~vV~AdG~~  232 (526)
T 2pyx_A          169 GYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQ---------------NGEISGQLFIDCTGAK  232 (526)
T ss_dssp             EEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESS---------------SCEEECSEEEECSGGG
T ss_pred             eEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECC---------------CCEEEcCEEEECCCcc
Confidence            6899999999999999999 99999999 59999886456777888754               3569999999999999


Q ss_pred             chh
Q psy9487          91 GHL   93 (101)
Q Consensus        91 s~l   93 (101)
                      |.+
T Consensus       233 S~~  235 (526)
T 2pyx_A          233 SLL  235 (526)
T ss_dssp             CCC
T ss_pred             hHH
Confidence            988

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.71  E-value=6.3e-08  Score=73.19  Aligned_cols=69  Identities=14%  Similarity=0.084  Sum_probs=59.5

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..++.++|..|+++|.+.+++  ++|+.+++|+++..+ ++.+. |.+.+               |.++.|++||+|||.
T Consensus       119 ~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~a~~vV~AdG~  179 (407)
T 3rp8_A          119 SRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEED-ADGVT-VWFTD---------------GSSASGDLLIAADGS  179 (407)
T ss_dssp             SCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEEE-EEETT---------------SCEEEESEEEECCCT
T ss_pred             CceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcEE-EEEcC---------------CCEEeeCEEEECCCc
Confidence            357999999999999999988  999999999999986 45443 66654               468999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+++++
T Consensus       180 ~S~vr~~l  187 (407)
T 3rp8_A          180 HSALRPWV  187 (407)
T ss_dssp             TCSSHHHH
T ss_pred             ChHHHHHh
Confidence            99998887

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.70  E-value=3e-08  Score=78.31  Aligned_cols=69  Identities=22%  Similarity=0.259  Sum_probs=60.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .++.++|..|.+.|.+.|++.|++++.+ +|+++..++++.+++|.+.+               |.++.|+.||+|+|.+
T Consensus       158 ~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~---------------g~~i~ad~vV~A~G~~  221 (538)
T 2aqj_A          158 HAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKE---------------GRTLEADLFIDCSGMR  221 (538)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETT---------------SCEECCSEEEECCGGG
T ss_pred             ccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECC---------------CcEEEeCEEEECCCCc
Confidence            4799999999999999999999999999 89999886566788888765               4579999999999999


Q ss_pred             chhhH
Q psy9487          91 GHLTK   95 (101)
Q Consensus        91 s~l~~   95 (101)
                      |.+.+
T Consensus       222 s~~~~  226 (538)
T 2aqj_A          222 GLLIN  226 (538)
T ss_dssp             CCCCC
T ss_pred             hhhHH
Confidence            98843

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.68  E-value=1e-07  Score=75.27  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++.+.+..+.+.|.+++++.|++|+.+++|+++..+ ++.|. |.+.+    .+|        ..+++|++||.|||++|
T Consensus       100 ~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g--------~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          100 AKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDD-GAGVT-VEVRG----PEG--------KHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEE-TTEEE-EEEEE----TTE--------EEEEEESEEEECCCTTC
T ss_pred             eeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEc-CCeEE-EEEEc----CCC--------CEEEEeCEEEECCCcch
Confidence            689999999999999999999999999999999886 45444 66544    111        14799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.+++-
T Consensus       166 ~VR~~lg  172 (500)
T 2qa1_A          166 SVRKAAG  172 (500)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9988763

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.67  E-value=1e-07  Score=75.17  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++.+.+..+.+.|.++|++.|++|+.+++|+++..+ ++.|. |.+.+    .+|+        .+++|++||.|||++|
T Consensus       101 ~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g~--------~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          101 VKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDE-GDHVV-VEVEG----PDGP--------RSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEEC-SSCEE-EEEEC----SSCE--------EEEEEEEEEECCCTTC
T ss_pred             eEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEc----CCCc--------EEEEeCEEEEccCccc
Confidence            689999999999999999999999999999999886 44544 66544    1111        4799999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.++|-
T Consensus       167 ~VR~~lg  173 (499)
T 2qa2_A          167 TVRKAAG  173 (499)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9988763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.66  E-value=1.3e-07  Score=69.87  Aligned_cols=67  Identities=12%  Similarity=0.002  Sum_probs=56.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++...+.++|++.|+++|++|+++++|++|..+ +++ ++|++.+                .+++|+.||+|+|+|+
T Consensus       148 ~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~----------------g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          148 GADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDA----------------GSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSS----------------EEEEESEEEECCGGGH
T ss_pred             CceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCC----------------CEEEcCEEEECCChhH
Confidence            456788899999999999999999999999999986 455 6688764                4799999999999998


Q ss_pred             h-hhHH
Q psy9487          92 H-LTKS   96 (101)
Q Consensus        92 ~-l~~~   96 (101)
                      . +.+.
T Consensus       210 ~~l~~~  215 (381)
T 3nyc_A          210 DAIAGL  215 (381)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            4 4444

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.65  E-value=8.4e-08  Score=75.47  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCchhh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLT   94 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s~l~   94 (101)
                      .+.+.|.+.+++.|++|+++++|++|+.+++++|+||++.+.     ++       ...|+|+ .||+|+|.++...
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~-----g~-------~~~i~A~k~VVlAtGG~~~n~  267 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQY-----GK-------EVAVRARRGVVLATGSFAYND  267 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEET-----TE-------EEEEEEEEEEEECCCCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEEC-----Cc-------EEEEEeCCeEEEeCCChhhCH
Confidence            788999999999999999999999999964689999998641     11       1479995 9999999999763

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.65  E-value=1.3e-07  Score=70.89  Aligned_cols=68  Identities=22%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ..+.++|..|.+.|.+.+++.|++|+.+++|+++..  ++   .|.+.+               |.++.|+.||+|+|.+
T Consensus       100 ~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~---------------g~~~~ad~vV~AdG~~  159 (379)
T 3alj_A          100 PWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQT---------------GEVLEADLIVGADGVG  159 (379)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETT---------------SCEEECSEEEECCCTT
T ss_pred             ceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECC---------------CCEEEcCEEEECCCcc
Confidence            478999999999999999999999999999999965  34   466644               4579999999999999


Q ss_pred             chhhHHHh
Q psy9487          91 GHLTKSLS   98 (101)
Q Consensus        91 s~l~~~l~   98 (101)
                      |.+.+++.
T Consensus       160 s~vr~~l~  167 (379)
T 3alj_A          160 SKVRDSIG  167 (379)
T ss_dssp             CHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99987763

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.64  E-value=9.5e-08  Score=75.16  Aligned_cols=77  Identities=22%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             CCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcE--EEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487           9 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus         9 ~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v--~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      +...+.+++..|.+.|.++|++.|++|+.+++|+++..++++++  +.|.+.+    .++        ..+++|++||+|
T Consensus       111 ~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~----~~~--------~~~i~a~~vV~A  178 (535)
T 3ihg_A          111 PAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAG----PDG--------EYDLRAGYLVGA  178 (535)
T ss_dssp             SCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEE----TTE--------EEEEEEEEEEEC
T ss_pred             CCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEc----CCC--------eEEEEeCEEEEC
Confidence            34478899999999999999999999999999999998643222  2244443    111        168999999999


Q ss_pred             ecCCchhhHHH
Q psy9487          87 EGCHGHLTKSL   97 (101)
Q Consensus        87 ~G~~s~l~~~l   97 (101)
                      ||++|.++++|
T Consensus       179 dG~~S~vR~~l  189 (535)
T 3ihg_A          179 DGNRSLVRESL  189 (535)
T ss_dssp             CCTTCHHHHHT
T ss_pred             CCCcchHHHHc
Confidence            99999998877

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.63  E-value=7.8e-08  Score=76.63  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ....+.+.|.+++++.||+|+++++|++++.+ + ++|+||++.+    .+|+.       ..|+|+.||+|+|.++.+.
T Consensus       248 ~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~----~~g~~-------~~i~A~~VVlAtGg~s~~~  315 (566)
T 1qo8_A          248 SGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHG----KHTGY-------YMIGAKSVVLATGGYGMNK  315 (566)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEE----TTTEE-------EEEEEEEEEECCCCCTTCH
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC-CCCcEEEEEEEe----CCCcE-------EEEEcCEEEEecCCcccCH
Confidence            36678899999999999999999999999986 6 8999999864    22221       3799999999999999883

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.63  E-value=2.1e-07  Score=69.21  Aligned_cols=67  Identities=10%  Similarity=0.138  Sum_probs=57.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch-
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH-   92 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~-   92 (101)
                      .++...+.+.|.+.+++.|++|+++++|+++..+ ++++.+|++.+                .+++|+.||+|+|+|+. 
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~----------------g~i~a~~VV~A~G~~s~~  207 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNK----------------GIIKTGIVVNATNAWANL  207 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETT----------------EEEECSEEEECCGGGHHH
T ss_pred             eECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECC----------------cEEECCEEEECcchhHHH
Confidence            4678899999999999999999999999999985 67888898864                37999999999999984 


Q ss_pred             hhHHH
Q psy9487          93 LTKSL   97 (101)
Q Consensus        93 l~~~l   97 (101)
                      +.+.+
T Consensus       208 l~~~~  212 (382)
T 1y56_B          208 INAMA  212 (382)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            44443

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.62  E-value=1.4e-07  Score=69.12  Aligned_cols=71  Identities=20%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++...+.+.|.+.+++.|++|+++++|+++..+ ++.++.|.+.+      |+       ..+++|+.||+|+|+|+
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~------g~-------~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          144 TGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVR-PEGGFELDFGG------AE-------PMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSSEEEEECT------TS-------CEEEEEEEEEECCGGGH
T ss_pred             CEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCceEEEEECC------Cc-------eeEEEeCEEEECCCcch
Confidence            345778899999999999999999999999999986 44434477654      21       15899999999999998


Q ss_pred             -hhhHH
Q psy9487          92 -HLTKS   96 (101)
Q Consensus        92 -~l~~~   96 (101)
                       .|.++
T Consensus       210 ~~l~~~  215 (369)
T 3dme_A          210 PGLARR  215 (369)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence             34443

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.61  E-value=1.7e-07  Score=68.59  Aligned_cols=85  Identities=18%  Similarity=0.298  Sum_probs=63.5

Q ss_pred             CCCCCCCCcEEE--EhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccc----c--ccCCCCCCcCCCC
Q psy9487           4 GMPMNNHGNYVV--RLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDV----G--IAKDGSPKDTFAR   74 (101)
Q Consensus         4 ~~~~~~~~~~~v--~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~----g--~~~~g~~~~~~~~   74 (101)
                      |.++...+.|.+  ++..+.++|.+++.+ .|++++++++|+++..+ ++++.+|.+...    .  ...++++      
T Consensus       103 G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~------  175 (284)
T 1rp0_A          103 GVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDP------  175 (284)
T ss_dssp             TCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCC------
T ss_pred             CCCcccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCce------
Confidence            555655566766  778899999999976 69999999999999986 688889887520    0  0011222      


Q ss_pred             CeEEEccEEEEeecCCchhhHH
Q psy9487          75 GMELHAKVTIFAEGCHGHLTKS   96 (101)
Q Consensus        75 g~~i~A~~VI~A~G~~s~l~~~   96 (101)
                       .+++|+.||+|+|..|.+...
T Consensus       176 -~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          176 -NVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             -EEEEEEEEEECCCSSSTTTTH
T ss_pred             -EEEECCEEEECCCCchHHHHH
Confidence             679999999999998877543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.61  E-value=8.2e-08  Score=72.00  Aligned_cols=72  Identities=21%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEe-ccccccCCCCCCcCCCCCe--EEEccEEEEee
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT-GDVGIAKDGSPKDTFARGM--ELHAKVTIFAE   87 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~-~~~g~~~~g~~~~~~~~g~--~i~A~~VI~A~   87 (101)
                      .++.+.+..+.+.|.+++++.|++|+.+++|+++..+ ++..+.|.+ .+               |.  +++|++||+||
T Consensus        96 ~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~~---------------g~~~~~~a~~vV~Ad  159 (394)
T 1k0i_A           96 TVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDL-QGERPYVTFERD---------------GERLRLDCDYIAGCD  159 (394)
T ss_dssp             CEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECT-TSSSCEEEEEET---------------TEEEEEECSEEEECC
T ss_pred             ceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEe-cCCceEEEEecC---------------CcEEEEEeCEEEECC
Confidence            4688899999999999999999999999999999864 322234665 33               33  79999999999


Q ss_pred             cCCchhhHHHh
Q psy9487          88 GCHGHLTKSLS   98 (101)
Q Consensus        88 G~~s~l~~~l~   98 (101)
                      |.+|.+.+++.
T Consensus       160 G~~S~vr~~l~  170 (394)
T 1k0i_A          160 GFHGISRQSIP  170 (394)
T ss_dssp             CTTCSTGGGSC
T ss_pred             CCCcHHHHhcC
Confidence            99999977653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.61  E-value=1.3e-07  Score=75.28  Aligned_cols=67  Identities=25%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ...+.+.|.+++++.||+|+++++|++|+.+++++|+||.+.+    .+|+.       ..|+|+.||+|+|.++...
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~i~a~~VVlAtGg~~~n~  320 (571)
T 1y0p_A          254 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKG----MYKGY-------YWVKADAVILATGGFAKNN  320 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEE----TTTEE-------EEEECSEEEECCCCCTTCH
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEe----CCCcE-------EEEECCeEEEeCCCcccCH
Confidence            4678899999999999999999999999986338999998864    12221       3799999999999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.58  E-value=3.6e-07  Score=70.66  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=55.2

Q ss_pred             cEEEE----hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          12 NYVVR----LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        12 ~~~v~----r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      +++..    ...+.+.|.+++++.||+|+++++|+++..+ ++++++|++.+               |.+++|+.||+|+
T Consensus       124 g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~---------------G~~i~Ad~VVlAt  187 (447)
T 2i0z_A          124 GRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQT---------------GEVLETNHVVIAV  187 (447)
T ss_dssp             GEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------CCEEECSCEEECC
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECC---------------CCEEECCEEEECC
Confidence            45554    5678889999999999999999999999985 78888998865               4569999999999


Q ss_pred             cCCc
Q psy9487          88 GCHG   91 (101)
Q Consensus        88 G~~s   91 (101)
                      |.+|
T Consensus       188 Gg~s  191 (447)
T 2i0z_A          188 GGKS  191 (447)
T ss_dssp             CCSS
T ss_pred             CCCc
Confidence            9999

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.56  E-value=2e-07  Score=74.59  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ...+.+.|.+++++.||+|+++++|++|+.+ + ++|+||++.+    .+|+.       ..|+|+.||+|+|.++.+.
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~~g~v~GV~~~~----~~G~~-------~~i~A~~VVlAtGg~~~~~  320 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKG----EYTGY-------YVIKADAVVIAAGGFAKNN  320 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEE----TTTEE-------EEEECSEEEECCCCCTTCH
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEEC-CCCeEEEEEEEe----CCCcE-------EEEEcCEEEEeCCCCccCH
Confidence            4578899999999999999999999999986 6 8999999864    12221       4799999999999999873

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.54  E-value=2.4e-07  Score=71.26  Aligned_cols=96  Identities=16%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             CCCCCCCCcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEecC----------------C--cEEEEEeccccc
Q psy9487           4 GMPMNNHGNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGD----------------G--SVKGIATGDVGI   62 (101)
Q Consensus         4 ~~~~~~~~~~~v~r--~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~----------------g--~v~GV~~~~~g~   62 (101)
                      |.++...++|...+  ..+.+.|.+++++ .|++++.++.|.+++.+++                +  +|.||.+...-.
T Consensus       144 Gv~~~~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v  223 (344)
T 3jsk_A          144 GVPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLV  223 (344)
T ss_dssp             TCCCEECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHH
T ss_pred             CCcccccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeee
Confidence            45565556666554  6777999999998 5999999999999998642                3  899998853211


Q ss_pred             cCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHHhhh
Q psy9487          63 AKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR  100 (101)
Q Consensus        63 ~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l~~~  100 (101)
                      ..++...... ...+|+|++||+|+|..+++.+.+.++
T Consensus       224 ~~~g~~~~~~-d~~~i~Ak~VV~ATG~~s~v~~~~~~~  260 (344)
T 3jsk_A          224 SMHHDDQSAM-DPNTINAPVIISTTGHDGPFGAFSVKR  260 (344)
T ss_dssp             HTTSSSSSCC-BCEEEECSEEEECCCSSSSSSCHHHHH
T ss_pred             eccCCccccc-CceEEEcCEEEECCCCCchhhHHHHHH
Confidence            1222111111 136899999999999999976555443

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.51  E-value=1.5e-07  Score=75.62  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCC-eEEEccEEEEeecC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGC   89 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g-~~i~A~~VI~A~G~   89 (101)
                      .++.+.+..+.+.|.+++++.|++|+.+++|+++..+ ++.+. |.+.+    .+         | .+++|++||+|||+
T Consensus       141 ~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~~~v~-v~~~~----~~---------G~~~~~a~~vV~ADG~  205 (570)
T 3fmw_A          141 YTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQD-AEAVE-VTVAG----PS---------GPYPVRARYGVGCDGG  205 (570)
T ss_dssp             SBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBC-SSCEE-EEEEE----TT---------EEEEEEESEEEECSCS
T ss_pred             eeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCeEE-EEEEe----CC---------CcEEEEeCEEEEcCCC
Confidence            3788999999999999999999999999999999875 44443 55532    01         3 58999999999999


Q ss_pred             CchhhHHH
Q psy9487          90 HGHLTKSL   97 (101)
Q Consensus        90 ~s~l~~~l   97 (101)
                      +|.+.+++
T Consensus       206 ~S~vR~~l  213 (570)
T 3fmw_A          206 RSTVRRLA  213 (570)
T ss_dssp             SCHHHHHT
T ss_pred             CchHHHHc
Confidence            99998776

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.51  E-value=3.7e-07  Score=70.41  Aligned_cols=61  Identities=11%  Similarity=0.122  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ...+-+.|++.++++|++|+++++|++|+.+ +++++||++.+               |.++.||.||.+..++..+
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~---------------g~~~~ad~VV~~a~~~~~~  280 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLED---------------GRRFLTQAVASNADVVHTY  280 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------SCEEECSCEEECCC-----
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecC---------------CcEEEcCEEEECCCHHHHH
Confidence            3578888999999999999999999999996 89999999987               6799999999998877654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.48  E-value=4.3e-07  Score=67.78  Aligned_cols=67  Identities=24%  Similarity=0.361  Sum_probs=55.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc-h
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG-H   92 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s-~   92 (101)
                      .++-..+.+.|.+.+++.|++|+++++|+++..+ ++++++|++.+               | +++|+.||+|+|+++ .
T Consensus       170 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~a~~vV~a~G~~s~~  232 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTR---------------G-TIHAGKVALAGAGHSSV  232 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETT---------------C-CEEEEEEEECCGGGHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCC---------------c-eEECCEEEECCchhHHH
Confidence            3455688899999999999999999999999985 67888898864               3 699999999999998 4


Q ss_pred             hhHHH
Q psy9487          93 LTKSL   97 (101)
Q Consensus        93 l~~~l   97 (101)
                      +.+.+
T Consensus       233 l~~~~  237 (405)
T 2gag_B          233 LAEMA  237 (405)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            55443

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.46  E-value=8e-07  Score=67.80  Aligned_cols=96  Identities=14%  Similarity=0.251  Sum_probs=65.2

Q ss_pred             CCCCCCCCCcEEEE--hHHHHHHHHHHHHHC-CCEEecCCceeEEEEec--C-C--cEEEEEeccccccCCCCCCcCCCC
Q psy9487           3 FGMPMNNHGNYVVR--LGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHG--D-G--SVKGIATGDVGIAKDGSPKDTFAR   74 (101)
Q Consensus         3 ~~~~~~~~~~~~v~--r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~--~-g--~v~GV~~~~~g~~~~g~~~~~~~~   74 (101)
                      +|.++...+.|.+.  ...+.+.|.+++++. |++++.++.|.+++.++  + +  +|.||.+.......++...... .
T Consensus       129 ~Gv~~~~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~-d  207 (326)
T 2gjc_A          129 LEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCM-D  207 (326)
T ss_dssp             TTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCC-C
T ss_pred             hCcccccCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceecc-C
Confidence            45666666666665  466788889999885 99999999999999863  3 5  9999988532222222110011 1


Q ss_pred             CeEEEc---------------cEEEEeecCCchhhHHHhh
Q psy9487          75 GMELHA---------------KVTIFAEGCHGHLTKSLSS   99 (101)
Q Consensus        75 g~~i~A---------------~~VI~A~G~~s~l~~~l~~   99 (101)
                      ...|.|               ++||+|+|..+++.+.+..
T Consensus       208 ~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~  247 (326)
T 2gjc_A          208 PNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAK  247 (326)
T ss_dssp             CEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHH
T ss_pred             ceEEEEeeccccccccccccCCEEEECcCCCchHHHHHHh
Confidence            367999               9999999999998776654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.46  E-value=4.2e-07  Score=69.45  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEe--------------cCCcEEEEEeccccccCCCCCCcCCCCCeE
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH--------------GDGSVKGIATGDVGIAKDGSPKDTFARGME   77 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~--------------~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~   77 (101)
                      ...++-..+.+.|.+.+++.|++|+++++|+++..+              +++++++|++.+               | +
T Consensus       175 ~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~---------------g-~  238 (448)
T 3axb_A          175 AGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSD---------------G-T  238 (448)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETT---------------S-C
T ss_pred             CeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCC---------------C-E
Confidence            344677799999999999999999999999999872              256788888754               3 5


Q ss_pred             E--EccEEEEeecCCch-hhHH
Q psy9487          78 L--HAKVTIFAEGCHGH-LTKS   96 (101)
Q Consensus        78 i--~A~~VI~A~G~~s~-l~~~   96 (101)
                      +  +|+.||+|+|+|+. +.+.
T Consensus       239 i~~~Ad~VV~AtG~~s~~l~~~  260 (448)
T 3axb_A          239 RVEVGEKLVVAAGVWSNRLLNP  260 (448)
T ss_dssp             EEEEEEEEEECCGGGHHHHHGG
T ss_pred             EeecCCEEEECCCcCHHHHHHH
Confidence            8  99999999999986 5444

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.45  E-value=1.1e-06  Score=65.98  Aligned_cols=67  Identities=18%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++...+.+.|.+.|++.|++|+++++|+++..+ ++.+. |++.+                .+++|+.||+|+|+|+
T Consensus       147 ~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~-v~t~~----------------g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          147 GGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD-ADGVS-VTTDR----------------GTYRAGKVVLACGPYT  208 (397)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEEE-EEESS----------------CEEEEEEEEECCGGGH
T ss_pred             CCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeEE-EEECC----------------CEEEcCEEEEcCCcCh
Confidence            346677889999999999999999999999999885 45543 65542                4799999999999995


Q ss_pred             h-hhHH
Q psy9487          92 H-LTKS   96 (101)
Q Consensus        92 ~-l~~~   96 (101)
                      . +.+.
T Consensus       209 ~~l~~~  214 (397)
T 2oln_A          209 NDLLEP  214 (397)
T ss_dssp             HHHHGG
T ss_pred             HHHhhh
Confidence            4 4444

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.44  E-value=4e-07  Score=67.60  Aligned_cols=67  Identities=24%  Similarity=0.221  Sum_probs=55.9

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++...+.+.|.+.+++.|++|+++++|+++..+ ++++ +|.+.+                .+++|+.||+|+|.++.
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~----------------g~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPS----------------GDVWANHVVVASGVWSG  220 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETT----------------EEEEEEEEEECCGGGTH
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCC----------------ceEEcCEEEECCChhHH
Confidence            44567889999999999999999999999999875 5666 777754                37999999999999986


Q ss_pred             -hhHHH
Q psy9487          93 -LTKSL   97 (101)
Q Consensus        93 -l~~~l   97 (101)
                       +.+.+
T Consensus       221 ~l~~~~  226 (382)
T 1ryi_A          221 MFFKQL  226 (382)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence             55543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.41  E-value=1.2e-06  Score=64.86  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=55.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.++|..|.++|.+.   .+..|..+++++++..++++.|. |.+.+               |.+++|++||.|||++|
T Consensus       106 ~~~i~R~~L~~~L~~~---~~~~v~~~~~v~~~~~~~~~~v~-v~~~d---------------G~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          106 RLSISRTELKEILNKG---LANTIQWNKTFVRYEHIENGGIK-IFFAD---------------GSHENVDVLVGADGSNS  166 (412)
T ss_dssp             EEEEEHHHHHHHHHTT---CTTTEECSCCEEEEEECTTSCEE-EEETT---------------SCEEEESEEEECCCTTC
T ss_pred             ceEeeHHHHHHHHHhh---ccceEEEEEEEEeeeEcCCCeEE-EEECC---------------CCEEEeeEEEECCCCCc
Confidence            5789999999998764   45679999999999875455543 66655               57899999999999999


Q ss_pred             hhhHHHh
Q psy9487          92 HLTKSLS   98 (101)
Q Consensus        92 ~l~~~l~   98 (101)
                      .+.++|.
T Consensus       167 ~vR~~l~  173 (412)
T 4hb9_A          167 KVRKQYL  173 (412)
T ss_dssp             HHHHHHS
T ss_pred             chHHHhC
Confidence            9988773

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.40  E-value=9.2e-07  Score=71.62  Aligned_cols=81  Identities=10%  Similarity=0.070  Sum_probs=61.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      ..+.+++..+.++|.+++++.|+  +|+.+++|+++..+++  +..+.|.+.+.+...+|+       ..+++|++||.|
T Consensus       134 ~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~-------~~~i~a~~vVgA  206 (639)
T 2dkh_A          134 PHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQ-------IETVQARYVVGC  206 (639)
T ss_dssp             CEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTC-------EEEEEEEEEEEC
T ss_pred             ceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCC-------eEEEEeCEEEEC
Confidence            46789999999999999999998  9999999999998632  223446554200001222       157999999999


Q ss_pred             ecCCchhhHHHh
Q psy9487          87 EGCHGHLTKSLS   98 (101)
Q Consensus        87 ~G~~s~l~~~l~   98 (101)
                      ||++|.++++|-
T Consensus       207 DG~~S~vR~~lg  218 (639)
T 2dkh_A          207 DGARSNVRRAIG  218 (639)
T ss_dssp             CCTTCHHHHHTT
T ss_pred             CCcchHHHHHhC
Confidence            999999987763

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.37  E-value=9.5e-07  Score=70.73  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .++-..+...|++.|++.|++|+++++|+++..+ ++++++|++.+.   .+|+       +.+|+|+.||+|+|+|+.
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~---~tg~-------~~~i~A~~VV~AaG~~s~  233 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDR---LTDT-------THTIYAKKVVNAAGPWVD  233 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEET---TTCC-------EEEEEEEEEEECCGGGHH
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEc---CCCc-------eEEEECCEEEECCCcchH
Confidence            5667889999999999999999999999999996 789999998751   1232       268999999999999984

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.37  E-value=4.9e-07  Score=68.81  Aligned_cols=66  Identities=20%  Similarity=0.230  Sum_probs=50.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCcee---------EEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccE
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPAS---------EVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV   82 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~---------~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~   82 (101)
                      ...++...+.++|.+.+++.|++|+++++|+         ++..+ ++++ +|++.+                .+++|+.
T Consensus       166 ~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~----------------g~i~a~~  227 (405)
T 3c4n_A          166 ALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHET----------------RQIRAGV  227 (405)
T ss_dssp             CEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCC----------------EEEEEEE
T ss_pred             CEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECC----------------cEEECCE
Confidence            3456788899999999999999999999999         88764 5565 676643                4799999


Q ss_pred             EEEeecCCc-hhhH
Q psy9487          83 TIFAEGCHG-HLTK   95 (101)
Q Consensus        83 VI~A~G~~s-~l~~   95 (101)
                      ||+|+|+|+ .+.+
T Consensus       228 VV~A~G~~s~~l~~  241 (405)
T 3c4n_A          228 IIVAAGAAGPALVE  241 (405)
T ss_dssp             EEECCGGGHHHHHH
T ss_pred             EEECCCccHHHHHH
Confidence            999999998 5655

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.35  E-value=1.2e-06  Score=62.13  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             EhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          16 RLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++..+.++|.+.+++. |++++. ++|+++..+ ++++++|.+.+               |.+++|+.||+|+|.++.
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~~-~~v~~i~~~-~~~v~~v~~~~---------------g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLFQ-ATATGLLLE-GNRVVGVRTWE---------------GPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEE-TTEEEEEEETT---------------SCCEECSEEEECCTTCSS
T ss_pred             CHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEe-CCEEEEEEECC---------------CCEEECCEEEECCCCChh
Confidence            6778999999999997 999994 799999985 67888888764               457999999999999765

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.33  E-value=2.4e-06  Score=70.80  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++...+.++|++.|++.|++|+++++|++|..+ ++++++|.+.+                .+++|+.||+|+|+|+
T Consensus       145 ~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~----------------G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          145 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTAD----------------GVIPADIVVSCAGFWG  207 (830)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT----------------EEEECSEEEECCGGGH
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECC----------------cEEECCEEEECCccch
Confidence            345588899999999999999999999999999985 67888898864                4799999999999998


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      ..
T Consensus       208 ~~  209 (830)
T 1pj5_A          208 AK  209 (830)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.32  E-value=2.5e-06  Score=69.18  Aligned_cols=64  Identities=14%  Similarity=0.101  Sum_probs=54.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++...+.+.|.+.|++.|++|+++++|++|..+ +++ ++|++.+               |.++.|+.||+|+|.++
T Consensus       411 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~---------------G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          411 GGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDC-WLLNFAG---------------DQQATHSVVVLANGHQI  473 (676)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTE-EEEEETT---------------SCEEEESEEEECCGGGG
T ss_pred             CeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCe-EEEEECC---------------CCEEECCEEEECCCcch
Confidence            455677899999999999999999999999999986 555 4677754               45799999999999998


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       474 ~  474 (676)
T 3ps9_A          474 S  474 (676)
T ss_dssp             G
T ss_pred             h
Confidence            6

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.31  E-value=4.1e-06  Score=61.88  Aligned_cols=63  Identities=22%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++...+.++|.+.+++.|++|+++++|+++..+ ++. +.|++.+                .+++|+.||+|+|+|+
T Consensus       143 ~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~----------------g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          143 SGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDG-VTIETAD----------------GEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSS-EEEEESS----------------CEEEEEEEEECCGGGG
T ss_pred             CcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCE-EEEEECC----------------CeEEcCEEEEcCCccH
Confidence            345677889999999999999999999999999985 445 3466653                3599999999999987


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       205 ~  205 (372)
T 2uzz_A          205 K  205 (372)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.29  E-value=2.8e-06  Score=68.50  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.|++|++++.|++++.+++++|.||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~---~~g~~-------~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCI---ETGEV-------VYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEET---TTCCE-------EEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCeE-------EEEEcCEEEECCCCCccc
Confidence            4678889999999999999999999999853689999987531   12321       479999999999999865

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.25  E-value=5.2e-06  Score=66.95  Aligned_cols=60  Identities=18%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ...+.+.|.+.+++.|++|+++++|+++..+ ++++.+|.+.+               |.++.|+.||+|+|.++.
T Consensus       219 ~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~---------------G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          219 LVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSN---------------GEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETT---------------SCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECC---------------CCEEECCEEEECCCCChh
Confidence            4677888899999999999999999999985 78899999875               568999999999999996

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.25  E-value=6.7e-06  Score=60.94  Aligned_cols=62  Identities=21%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++...+.+.|.+.+++.|++|+++++|+++..+ ++.+ .|++.+                .+++|+.||+|+|+|+.
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~-~v~~~~----------------g~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETAN----------------GSYTADKLIVSMGAWNS  206 (389)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETT----------------EEEEEEEEEECCGGGHH
T ss_pred             cEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCeE-EEEeCC----------------CEEEeCEEEEecCccHH
Confidence            45677899999999999999999999999999985 4443 466643                47999999999999875

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.24  E-value=7e-06  Score=61.90  Aligned_cols=66  Identities=17%  Similarity=0.043  Sum_probs=54.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+..+.+.|.+.+  .|++|+.+++|+++..+ ++.+. |.+.+               |.++.|++||+|||.+|.+
T Consensus        95 ~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           95 FTSYDSIYGGLYELF--GPERYHTSKCLVGLSQD-SETVQ-MRFSD---------------GTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EEEHHHHHHHHHHHH--CSTTEETTCCEEEEEEC-SSCEE-EEETT---------------SCEEEESEEEECCCTTCHH
T ss_pred             ccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEec-CCEEE-EEECC---------------CCEEECCEEEECCCcchhH
Confidence            577889999988776  59999999999999885 45544 66654               4679999999999999999


Q ss_pred             hHHHh
Q psy9487          94 TKSLS   98 (101)
Q Consensus        94 ~~~l~   98 (101)
                      .+++.
T Consensus       156 r~~~~  160 (397)
T 2vou_A          156 RKRLL  160 (397)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.22  E-value=5.4e-06  Score=62.76  Aligned_cols=74  Identities=22%  Similarity=0.327  Sum_probs=57.4

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          12 NYVVRLGHVVKWLGEQAEA-MG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~-~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+.++|..|+++|.+++++ .| ++|+.+++|+++.. +++ +. |.+.+.   .+|+.       .+++|++||+|||.
T Consensus       101 ~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v~-v~~~~~---~~g~~-------~~~~ad~vV~AdG~  167 (410)
T 3c96_A          101 QYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-RV-LIGARD---GHGKP-------QALGADVLVGADGI  167 (410)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-EE-EEEEEE---TTSCE-------EEEEESEEEECCCT
T ss_pred             eeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-cE-EEEecC---CCCCc-------eEEecCEEEECCCc
Confidence            5899999999999999987 47 58999999999987 344 33 444320   11221       57999999999999


Q ss_pred             CchhhHHHh
Q psy9487          90 HGHLTKSLS   98 (101)
Q Consensus        90 ~s~l~~~l~   98 (101)
                      +|.++++|.
T Consensus       168 ~S~vR~~l~  176 (410)
T 3c96_A          168 HSAVRAHLH  176 (410)
T ss_dssp             TCHHHHHHC
T ss_pred             cchhHHHhc
Confidence            999988773

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.21  E-value=6e-06  Score=65.58  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..++.+.+..+.++|.+.+++.   |+.+++|+++..+ ++.|+ |.+.+.   .+|+       ..+++|++||.|||+
T Consensus       130 ~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~-~~~v~-v~~~~~---~~G~-------~~~i~a~~vVgADG~  194 (549)
T 2r0c_A          130 EPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQR-DDHVR-ATITDL---RTGA-------TRAVHARYLVACDGA  194 (549)
T ss_dssp             SCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEEC-SSCEE-EEEEET---TTCC-------EEEEEEEEEEECCCT
T ss_pred             CcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEe-CCEEE-EEEEEC---CCCC-------EEEEEeCEEEECCCC
Confidence            3468999999999999999988   9999999999986 45554 555431   1232       157999999999999


Q ss_pred             CchhhHHHh
Q psy9487          90 HGHLTKSLS   98 (101)
Q Consensus        90 ~s~l~~~l~   98 (101)
                      +|.+.++|-
T Consensus       195 ~S~vR~~lg  203 (549)
T 2r0c_A          195 SSPTRKALG  203 (549)
T ss_dssp             TCHHHHHHT
T ss_pred             CcHHHHHcC
Confidence            999988773

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.20  E-value=5.8e-06  Score=59.95  Aligned_cols=72  Identities=18%  Similarity=0.243  Sum_probs=56.3

Q ss_pred             CCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEE
Q psy9487           4 GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVT   83 (101)
Q Consensus         4 ~~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~V   83 (101)
                      ++++........++..+.++|.+.+++.|++++.+++|+++..+ ++.+.+|.+.+               + ++.++.|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~~d~v  124 (357)
T 4a9w_A           62 GWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHF-GERLRVVARDG---------------R-QWLARAV  124 (357)
T ss_dssp             SSCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTS---------------C-EEEEEEE
T ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCC---------------C-EEEeCEE
Confidence            33444444455678999999999999999999999999999885 55544477654               3 7999999


Q ss_pred             EEeecCCch
Q psy9487          84 IFAEGCHGH   92 (101)
Q Consensus        84 I~A~G~~s~   92 (101)
                      |+|+|.++.
T Consensus       125 V~AtG~~~~  133 (357)
T 4a9w_A          125 ISATGTWGE  133 (357)
T ss_dssp             EECCCSGGG
T ss_pred             EECCCCCCC
Confidence            999998653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.19  E-value=5e-06  Score=67.80  Aligned_cols=65  Identities=20%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.|++|++++.|++++.+ +++|.||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCI---EDGTI-------HRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEET---TTCCE-------EEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCccccc
Confidence            378889999999999999999999999986 789999988531   22322       479999999999999865

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.18  E-value=5.5e-06  Score=62.33  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++++|.+.                |.++.|+.||+|.+++..
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~----------------g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD----------------DRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET----------------TEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC----------------CEEEECCEEEECCCHHHH
Confidence            567888999999999999999999999996 7889999874                368999999999998754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.18  E-value=6e-06  Score=67.22  Aligned_cols=63  Identities=14%  Similarity=0.015  Sum_probs=52.7

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCe-EEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~-~i~A~~VI~A~G~~s   91 (101)
                      ..++-..+.+.|.+.|++.|++|+++++|++|..+ +++ +.|++.+               |. ++.|+.||+|+|.++
T Consensus       407 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~---------------G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQ-WQLTFGQ---------------SQAAKHHATVILATGHRL  469 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSS-EEEEEC----------------CCCCEEESEEEECCGGGT
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCe-EEEEeCC---------------CcEEEECCEEEECCCcch
Confidence            34577889999999999999999999999999986 555 4677754               34 699999999999997


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       470 ~  470 (689)
T 3pvc_A          470 P  470 (689)
T ss_dssp             T
T ss_pred             h
Confidence            6

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.17  E-value=3.9e-06  Score=67.26  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=55.1

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++-..+...|++.|++.|++|+++++|+++..+ ++++++|++.+.   .+++       +.+|+|+.||+|+|+|+.-
T Consensus       185 v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~---~tg~-------~~~i~A~~VV~AaG~ws~~  252 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDL---LTDE-------VIEIKAKLVINTSGPWVDK  252 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEET---TTCC-------EEEEEBSCEEECCGGGHHH
T ss_pred             EchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEc---CCCC-------EEEEEcCEEEECCChhHHH
Confidence            456678888999999999999999999999986 678999987541   1121       2479999999999999843

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.16  E-value=2.1e-06  Score=64.82  Aligned_cols=68  Identities=12%  Similarity=-0.005  Sum_probs=55.1

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +...++|..|.++|.+.+.+  ++|+.+++|+++..+ ++.+. |.+.+               |.+++|++||+|||.+
T Consensus       121 ~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~  181 (398)
T 2xdo_A          121 DNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPG-KKKWT-LTFEN---------------KPSETADLVILANGGM  181 (398)
T ss_dssp             SCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEEC-SSSEE-EEETT---------------SCCEEESEEEECSCTT
T ss_pred             CCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEEC-CCEEE-EEECC---------------CcEEecCEEEECCCcc
Confidence            45679999999999988764  789999999999885 44443 66654               4579999999999999


Q ss_pred             chhhHHH
Q psy9487          91 GHLTKSL   97 (101)
Q Consensus        91 s~l~~~l   97 (101)
                      |.+++++
T Consensus       182 S~vR~~l  188 (398)
T 2xdo_A          182 SKVRKFV  188 (398)
T ss_dssp             CSCCTTT
T ss_pred             hhHHhhc
Confidence            9997765

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.16  E-value=6.6e-06  Score=64.51  Aligned_cols=67  Identities=15%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ++...+..+|++.|++.|++|+++++|+++..+ + ++++|.+.+.   .+|+       ..+++|+.||+|+|+|+.-
T Consensus       146 v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~---~~G~-------~~~i~A~~VV~AtG~~s~~  212 (501)
T 2qcu_A          146 VDDARLVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDI---DTGK-------KYSWQARGLVNATGPWVKQ  212 (501)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEET---TTCC-------EEEEEESCEEECCGGGHHH
T ss_pred             EcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEEC---CCCC-------EEEEECCEEEECCChhHHH
Confidence            688999999999999999999999999999985 3 7888888531   1121       1379999999999999863

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.14  E-value=6e-06  Score=65.68  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ..+-+.|.+.+++.|++|+++++|++|+.+++++++||++.+               |.+++|+.||.|.+.+
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~---------------G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSD---------------GEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETT---------------SCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECC---------------CcEEECCEEEECCCcc
Confidence            678899999999999999999999999994478999999975               5689999999999987

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.13  E-value=8.8e-06  Score=66.75  Aligned_cols=64  Identities=23%  Similarity=0.319  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+++++.|++|++++.|++++.+ +++|.||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~G~~-------~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDL---VTGDI-------IAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEET---TTCCE-------EEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEEC---CCCcE-------EEEEcCEEEEccCcchhh
Confidence            67888999999999999999999999985 789999987531   12321       469999999999999865

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.11  E-value=1e-05  Score=66.02  Aligned_cols=90  Identities=11%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             CCCcEEEEhHHHHHHHHHHHHHCC---CEEecCCceeEEEEec------CCcEEEEEeccccc-----------cCCCCC
Q psy9487           9 NHGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYHG------DGSVKGIATGDVGI-----------AKDGSP   68 (101)
Q Consensus         9 ~~~~~~v~r~~~d~~l~~~A~~~G---v~i~~gt~v~~i~~~~------~g~v~GV~~~~~g~-----------~~~g~~   68 (101)
                      ....+++++..+.++|.+.+++.|   ++|..++.++++..++      ++.-+.|.+.+...           ..++-.
T Consensus       110 ~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  189 (665)
T 1pn0_A          110 RYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLF  189 (665)
T ss_dssp             SSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSC
T ss_pred             CCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccc
Confidence            345688999999999999999988   9999999999998863      12223344432000           000000


Q ss_pred             CcC----------------CCCC--eEEEccEEEEeecCCchhhHHHh
Q psy9487          69 KDT----------------FARG--MELHAKVTIFAEGCHGHLTKSLS   98 (101)
Q Consensus        69 ~~~----------------~~~g--~~i~A~~VI~A~G~~s~l~~~l~   98 (101)
                      ..+                ...|  .+++|++||.|||++|.++++|-
T Consensus       190 ~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg  237 (665)
T 1pn0_A          190 RSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLG  237 (665)
T ss_dssp             CCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred             cccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcC
Confidence            000                0113  57999999999999999988874

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.10  E-value=1e-05  Score=62.68  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+..+.+.|.+++++.|++|+++++|+++..+ ++. +.|.+.+               | +++|+.||+|+|.+|
T Consensus       130 ~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~---------------g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          130 SAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASG-FRVTTSA---------------G-TVDAASLVVASGGKS  187 (417)
T ss_dssp             CHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETT---------------E-EEEESEEEECCCCSS
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECC---------------c-EEEeeEEEECCCCcc
Confidence            45688899999999999999999999999886 443 5577654               3 799999999999998

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.05  E-value=9.2e-06  Score=65.71  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.| ++|++++.|++++.+ +++|.||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~---~~G~~-------~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEET---TTTEE-------EEEECSCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCCccc
Confidence            478889999999999 999999999999986 789999976531   12221       379999999999999977

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.03  E-value=2.3e-05  Score=52.72  Aligned_cols=64  Identities=20%  Similarity=0.222  Sum_probs=51.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      +....+.+++.+.+++.|++++++ +|+++..+ ++. ..|++.+               | ++.++.||+|+|.++.+.
T Consensus        53 ~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~-~~~-~~v~~~~---------------g-~i~ad~vI~A~G~~~~~~  113 (180)
T 2ywl_A           53 PSGEELLRRLEAHARRYGAEVRPG-VVKGVRDM-GGV-FEVETEE---------------G-VEKAERLLLCTHKDPTLP  113 (180)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEEC-SSS-EEEECSS---------------C-EEEEEEEEECCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEc-CCE-EEEEECC---------------C-EEEECEEEECCCCCCCcc
Confidence            446788899999999999999999 99999875 343 3466544               4 799999999999999776


Q ss_pred             HHH
Q psy9487          95 KSL   97 (101)
Q Consensus        95 ~~l   97 (101)
                      +.+
T Consensus       114 ~~~  116 (180)
T 2ywl_A          114 SLL  116 (180)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.98  E-value=6.6e-06  Score=65.61  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEecCC------cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDG------SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g------~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.|.+++++ .|++|++++.|++++.++++      +|.||.+.+.   .+|+.       ..|+|+.||+|+|.++
T Consensus       139 ~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~---~~G~~-------~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          139 EVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNR---NKETV-------ETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ---CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEET---TTTEE-------EEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCcc
Confidence            566778899998 79999999999999984346      8999988641   12221       4799999999999999


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      .+
T Consensus       209 ~~  210 (540)
T 1chu_A          209 KV  210 (540)
T ss_dssp             GG
T ss_pred             cc
Confidence            75

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.92  E-value=3.4e-05  Score=63.59  Aligned_cols=63  Identities=14%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.++|..+.+.|.+.+++ .|++|+ .+.|+++..+ +++|.||.+.+               |..+.|+.||+|+|.++
T Consensus       118 ~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~d---------------G~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          118 AQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNL---------------GVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETT---------------SCEEECSEEEECCTTCB
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECC---------------CcEEEeCEEEEccCCCc
Confidence            467899999999999998 599996 5699999985 78999999865               56899999999999875


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       181 ~  181 (637)
T 2zxi_A          181 N  181 (637)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.91  E-value=3.2e-05  Score=63.80  Aligned_cols=63  Identities=14%  Similarity=0.162  Sum_probs=54.2

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+++..+.+.|.+.+++ .|++|+ .+.|+++..+ +++|++|.+.+               |.+++|+.||+|+|.++
T Consensus       119 ~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~d---------------G~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          119 AQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQM---------------GLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETT---------------SEEEEEEEEEECCSTTT
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECC---------------CCEEECCEEEEcCCCCc
Confidence            467888999999999998 699996 4699999985 78999999865               56899999999999986


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       182 ~  182 (651)
T 3ces_A          182 D  182 (651)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.91  E-value=4.7e-05  Score=58.49  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEec---CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~---~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ....+.+.|.+.+++.||+|+++++|+++..++   ++. +.|++.+                .+++|+.||+|+|.++
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~----------------g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNS----------------TQWQCKNLIVATGGLS  168 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETT----------------EEEEESEEEECCCCSS
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECC----------------CEEECCEEEECCCCcc
Confidence            578888899999999999999999999998741   244 4566643                3799999999999998

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.88  E-value=2e-05  Score=64.76  Aligned_cols=69  Identities=13%  Similarity=0.100  Sum_probs=54.8

Q ss_pred             EEhHHHHHHHHHHHHHC--CCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          15 VRLGHVVKWLGEQAEAM--GVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~--Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +....+.+.|.+++++.  |++|++++.|.+++.+++  ++|.||.+.+.   .+|+.       ..|+|+.||+|+|..
T Consensus       163 ~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVLATGG~  232 (662)
T 3gyx_A          163 INGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNL---RANEV-------HIFKANAMVVACGGA  232 (662)
T ss_dssp             EEETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEES---SSSCE-------EEEECSEEEECCCCB
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEc---CCCcE-------EEEEeCEEEECCCcc
Confidence            34457888899999998  999999999999999633  39999987541   23332       579999999999998


Q ss_pred             chh
Q psy9487          91 GHL   93 (101)
Q Consensus        91 s~l   93 (101)
                      +.+
T Consensus       233 g~~  235 (662)
T 3gyx_A          233 VNV  235 (662)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            854

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.87  E-value=4.3e-05  Score=59.73  Aligned_cols=62  Identities=23%  Similarity=0.269  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ...+.+.|.+++++.|++|++++.| +++.+ +++|.||.+.+.              +.++.|+.||+|+|.++.+.
T Consensus       118 g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~--------------~g~~~a~~VVlAtGg~~~~~  179 (472)
T 2e5v_A          118 GREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKR--------------GLVEDVDKLVLATGGYSYLY  179 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETTT--------------EEECCCSEEEECCCCCGGGS
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeC--------------CCeEEeeeEEECCCCCcccC
Confidence            3567888999998899999999999 99886 789999987531              13578999999999998763

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.86  E-value=5.5e-05  Score=62.34  Aligned_cols=63  Identities=14%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          13 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.++|..+.+.|.+.+++. |++|+.+ .|+++..+ +++|.||.+.+               |..+.|+.||+|+|.++
T Consensus       112 ~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~---------------G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          112 AQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRS---------------GRAIQAKAAILACGTFL  174 (641)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETT---------------SCEEEEEEEEECCTTCB
T ss_pred             hhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECC---------------CcEEEeCEEEECcCCCC
Confidence            4788999999999999884 9999765 89999885 78999999865               46899999999999885


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       175 ~  175 (641)
T 3cp8_A          175 N  175 (641)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.84  E-value=3.7e-05  Score=62.47  Aligned_cols=66  Identities=24%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHC-CC-EEecCCceeEEEEecCC---cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAM-GV-EIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~-Gv-~i~~gt~v~~i~~~~~g---~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      -..+.+.|.+.+++. |+ +|++++.|++++.+ ++   +|.||.+.+.   .+|+       ...|+|+.||+|+|.++
T Consensus       150 g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~---~~g~-------~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          150 GESYKPIIAEAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSV---REPK-------FYVFKAKAVILATGGAT  218 (643)
T ss_dssp             ETTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEES---SSSC-------EEEEECSEEEECCCCBC
T ss_pred             cHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEe---cCCc-------EEEEEcCEEEECCCccc
Confidence            345778889999988 99 99999999999986 55   9999987431   1222       14799999999999998


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      .+
T Consensus       219 ~~  220 (643)
T 1jnr_A          219 LL  220 (643)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.81  E-value=5.4e-05  Score=58.58  Aligned_cols=59  Identities=20%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.|++.+++.|++|+++++|++|..+. ++++++|++.                |.++.|+.||+|.|.|+.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~----------------g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK----------------LGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET----------------TEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC----------------CeEEECCEEEECCCccch
Confidence            5788899999999999999999999999852 6788888873                368999999999999854

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.81  E-value=8.3e-05  Score=56.46  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+++.+.+++.|++|++++.|+++..+ ++++.+|++.+               |.++.||.||+|.|.....
T Consensus       194 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~d---------------G~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          194 EALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQD---------------GSVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEESS---------------SCEEECSEEEECSCCEESC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCCCccCh
Confidence            456777888899999999999999999874 68999999876               5789999999999987653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.80  E-value=8.3e-05  Score=56.37  Aligned_cols=59  Identities=17%  Similarity=0.373  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.++|.+.+++.||+|++++.|+++..+ ++++.+|++.+               |.++.+|.||+|.|....
T Consensus       184 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d---------------G~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          184 PEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSD---------------GNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------SCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECcCCccC
Confidence            356778888999999999999999999875 68899999876               568999999999998754

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.78  E-value=1.2e-05  Score=63.20  Aligned_cols=74  Identities=18%  Similarity=-0.011  Sum_probs=56.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      -+.+.+..+.+.|.+.+++.|++|+++++|+++..++ ++..++|.+.+.   .+|+       ..+++|+.||+|+|++
T Consensus       160 ~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~---~~g~-------~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          160 LDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPN---PPAQ-------LASYEFDVLISAAGGK  229 (497)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESC---CCHH-------HHTCCBSEEEECCCTT
T ss_pred             cccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEEC---CCCC-------EEEEEcCEEEECCCCC
Confidence            3468889999999999999999999999999998742 244566766320   0111       0368999999999999


Q ss_pred             chhhH
Q psy9487          91 GHLTK   95 (101)
Q Consensus        91 s~l~~   95 (101)
                      |.+.+
T Consensus       230 S~~r~  234 (497)
T 2bry_A          230 FVPEG  234 (497)
T ss_dssp             CCCTT
T ss_pred             ccccc
Confidence            98753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.77  E-value=4.5e-05  Score=58.79  Aligned_cols=58  Identities=16%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++++|.+.                |.+++|+.||+|.|.++.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~~~----------------g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSE----------------GEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEEET----------------TEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEEEC----------------CeEEECCEEEECCCCCcc
Confidence            578889999999999999999999999986 7888888753                478999999999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.61  E-value=1.3e-05  Score=60.27  Aligned_cols=57  Identities=18%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+.|..|.++|.+++++.|++|+++++|+++..  .         .                 ++.|++||+|||.+|
T Consensus        92 ~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~---------~-----------------~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A           92 LCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L---------P-----------------LADYDLVVLANGVNH  143 (381)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C---------C-----------------GGGCSEEEECCGGGG
T ss_pred             eeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c---------c-----------------cccCCEEEECCCCCc
Confidence            57899999999999999999999999999988732  1         0                 146899999999999


Q ss_pred             hhhHHH
Q psy9487          92 HLTKSL   97 (101)
Q Consensus        92 ~l~~~l   97 (101)
                      . .+++
T Consensus       144 ~-R~~l  148 (381)
T 3c4a_A          144 K-TAHF  148 (381)
T ss_dssp             G-TCCS
T ss_pred             h-HHhh
Confidence            8 6554

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.59  E-value=8.4e-05  Score=56.15  Aligned_cols=56  Identities=18%  Similarity=0.097  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.|++.+++.|++|+++++|++|..+ ++++  |.+ +               |.++.||.||+|.|++..
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V~~-~---------------g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIE-EKKV--YTR-D---------------NEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETT-TTEE--EET-T---------------CCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEE-CCEE--EEe-C---------------CcEEEeCEEEECCCHHHH
Confidence            567888999999999999999999999874 6666  543 2               468999999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.50  E-value=0.00053  Score=54.68  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             EEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ....+..+.++|.+.+++.|+  +++.++.|+++.+++++..+.|.+.+               |.++.++.||+|+|.+
T Consensus        82 ~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~---------------G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH---------------GEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             SEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETT---------------SCEEEEEEEEECCCSC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcC---------------CCEEEeCEEEECCccc
Confidence            457889999999999999999  89999999999997554566688765               4679999999999975


Q ss_pred             c
Q psy9487          91 G   91 (101)
Q Consensus        91 s   91 (101)
                      +
T Consensus       147 s  147 (540)
T 3gwf_A          147 S  147 (540)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.48  E-value=0.00011  Score=57.76  Aligned_cols=63  Identities=21%  Similarity=0.201  Sum_probs=45.9

Q ss_pred             HHHHHHHHHCC-CEEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMG-VEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++..|++.| ++|++++.|++|++++++ +++||++.+    .+|..    ....+++|+.||+|+|+...
T Consensus       225 ~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~----~~g~~----~~~~~v~A~~VIlaaG~~~s  289 (504)
T 1n4w_A          225 KTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKD----TDGKL----LATKEISCRYLFLGAGSLGS  289 (504)
T ss_dssp             TTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEEC----TTCCE----EEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC----CCCcc----ceeEEEeeCEEEEccCCCCC
Confidence            34456777776 999999999999996434 899999863    12210    00157999999999998744

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.41  E-value=0.0008  Score=49.52  Aligned_cols=62  Identities=18%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+..+.++|.+.+++.|++++.++.|+.+..+ ++..+.|.+.+               +.++.++.||+|+|+.+.
T Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~~~~~~li~AtG~~~~  132 (360)
T 3ab1_A           71 VPAIDLVESLWAQAERYNPDVVLNETVTKYTKL-DDGTFETRTNT---------------GNVYRSRAVLIAAGLGAF  132 (360)
T ss_dssp             EEHHHHHHHHHHHHHTTCCEEECSCCEEEEEEC-TTSCEEEEETT---------------SCEEEEEEEEECCTTCSC
T ss_pred             CCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEEC-CCceEEEEECC---------------CcEEEeeEEEEccCCCcC
Confidence            567889999999999999999999999999885 33233466654               457999999999999653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.40  E-value=0.00059  Score=53.68  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcE--EEEEeccccccCCCCCCcCCCCCe-EEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v--~GV~~~~~g~~~~g~~~~~~~~g~-~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|+++++|+++..++++++  +.|++.+               |. ++.+|.||+|+|.++..
T Consensus       256 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~---------------G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPN---------------GEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETT---------------EEEEEECSCEEECCCCEECC
T ss_pred             HHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECC---------------CcEEEEcCEEEECcCCccCC
Confidence            4567788899999999999999999987535565  3455543               34 79999999999988764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.35  E-value=0.0012  Score=54.50  Aligned_cols=62  Identities=10%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             cEEEE---hHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          12 NYVVR---LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        12 ~~~v~---r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      +|..-   ...+.+.|.+.++..|++|+++++|.+|+++++ ++++||+..+               |.+|+|+.||.+.
T Consensus       369 g~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~---------------Ge~i~A~~VVs~~  433 (650)
T 1vg0_A          369 PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF---------------GQRIISKHFIIED  433 (650)
T ss_dssp             SEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT---------------SCEEECSEEEEEG
T ss_pred             ceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCC---------------CCEEEcCEEEECh
Confidence            45555   789999999999999999999999999999633 8999998644               5789999999854


Q ss_pred             c
Q psy9487          88 G   88 (101)
Q Consensus        88 G   88 (101)
                      .
T Consensus       434 ~  434 (650)
T 1vg0_A          434 S  434 (650)
T ss_dssp             G
T ss_pred             h
Confidence            3

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.35  E-value=0.00063  Score=52.24  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.+.+++.|+++++++.++++..+ +++++.+|.+.+               |.++.+|.||+|.|....
T Consensus       192 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~---------------G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          192 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED---------------GTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT---------------SCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCC---------------CCEEEcCEEEECCCCCcC
Confidence            45677888899999999999999999761 257888888865               568999999999997654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.33  E-value=0.00027  Score=55.71  Aligned_cols=66  Identities=21%  Similarity=0.144  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHCC-CEEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .....++..|++.| ++|++++.|++|++++++ +++||+..+    .+|..    ....+++|+.||+|+|+...
T Consensus       227 s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~----~~g~~----~~~~~~~A~~VIlaaGa~~s  294 (507)
T 1coy_A          227 SLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQID----EQGNV----VATKVVTADRVFFAAGSVGT  294 (507)
T ss_dssp             CTTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEEC----TTSCE----EEEEEEEEEEEEECSHHHHH
T ss_pred             ChHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC----CCCcc----cccEEEEeCEEEEccCccCC
Confidence            33344566777776 999999999999996435 799999864    12210    00157999999999998744

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.27  E-value=0.00099  Score=48.78  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+..+.++|.+.+++.|++++.+++|+++..+ ++.+ .|.+.+                .++.++.||+|+|.++
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~----------------g~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISAD-DAYY-TIATTT----------------ETYHADYIFVATGDYN  143 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSSE-EEEESS----------------CCEEEEEEEECCCSTT
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEC-CCeE-EEEeCC----------------CEEEeCEEEECCCCCC
Confidence            466778888889999999999999999999875 3333 355543                2589999999999975

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.25  E-value=0.00082  Score=48.65  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+..+.++|.+.+++.|++++.++ |.++..+ ++.+ .|.+ +               +.+++++.||+|+|+++..
T Consensus        66 ~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~-~~~~-~v~~-~---------------~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           66 GILGVELTDKFRKQSERFGTTIFTET-VTKVDFS-SKPF-KLFT-D---------------SKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECS-SSSE-EEEC-S---------------SEEEEEEEEEECCCEEECC
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEc-CCEE-EEEE-C---------------CcEEEcCEEEECCCCCcCC
Confidence            36788999999999999999999997 8888764 3433 3555 3               4689999999999998653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.24  E-value=0.001  Score=51.24  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.|.+.+++.|++|+++++|+++..+ ++++. |.+.+               |.++.+|.||+|.|.+..
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVA-RVITD---------------KRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEE-EEEES---------------SCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeEE-EEEeC---------------CCEEEcCEEEECCCCCcC
Confidence            356677888899999999999999999874 56665 66654               468999999999998754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.22  E-value=0.00045  Score=52.62  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+.+.|++.+++.|++|+++++|++|..+ ++.++.|.+.                +.++.|+.||+|.+++.
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~v~~~----------------~~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQ-AEGRWKVSLR----------------DSSLEADHVISAIPASV  290 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEC-GGGCEEEECS----------------SCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCceEEEEEC----------------CeEEEcCEEEECCCHHH
Confidence            367888999999999999999999999985 4454557653                25799999999987654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.21  E-value=0.0012  Score=52.70  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          14 VVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ...+..+.++|.+.+++.|+  .++.++.|+++.++++...+.|.+.+               |.++.++.||+|+|..
T Consensus        95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~---------------G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A           95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR---------------GDEVSARFLVVAAGPL  158 (549)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETT---------------CCEEEEEEEEECCCSE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECC---------------CCEEEeCEEEECcCCC
Confidence            45778899999999999998  89999999999997555566788765               4679999999999954

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.21  E-value=0.00044  Score=54.58  Aligned_cols=61  Identities=20%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEE---EccEEEEeecCCch
Q psy9487          21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL---HAKVTIFAEGCHGH   92 (101)
Q Consensus        21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i---~A~~VI~A~G~~s~   92 (101)
                      ...+++.|++ .|++|++++.|++|+++ +++++||++.+.   .+|+.       .++   .++.||+|+|++..
T Consensus       198 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~---~~g~~-------~~~~v~~~~~VIlaaG~~~s  262 (546)
T 1kdg_A          198 VATYLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDP---TLGPN-------GFIPVTPKGRVILSAGAFGT  262 (546)
T ss_dssp             HHTHHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCT---TSSGG-------GEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEec---CCCce-------eEEEEEeCCEEEEcCChhcC
Confidence            3445677765 69999999999999996 689999998651   12321       123   78999999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.20  E-value=0.00055  Score=52.10  Aligned_cols=57  Identities=18%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.+..++.||+|++++.|+++.-  ++++.+|++.+               |.++.+|.||+|.|....
T Consensus       186 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~d---------------g~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          186 RIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASD---------------GRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETT---------------SCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECC---------------CCEEEcCEEEEeeCCeec
Confidence            4567788888999999999999999875  35777888865               578999999999998765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.20  E-value=0.0013  Score=51.95  Aligned_cols=63  Identities=13%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             EEEhHHHHHHHHHHHHHCC--CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          14 VVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~G--v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+..+.++|...+++.+  ++++.+++|+++.+++++..+.|.+.+               |.++.|+.||+|+|.++
T Consensus        90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~---------------G~~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A           90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH---------------GDRIRARYLIMASGQLS  154 (542)
T ss_dssp             SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETT---------------CCEEEEEEEEECCCSCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECC---------------CCEEEeCEEEECcCCCC
Confidence            3567888888888888876  789999999999997544455677754               45799999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.20  E-value=0.001  Score=47.70  Aligned_cols=63  Identities=21%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+..+.++|.+.+++.|++++.+++|+.+..+.+ +....|.+.+               |.++.++.+|+|+|+++.
T Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~---------------g~~~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           53 TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETAS---------------GAVLKARSIIVATGAKWR  116 (310)
T ss_dssp             EEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETT---------------SCEEEEEEEEECCCEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECC---------------CCEEEeCEEEECcCCCcC
Confidence            46778899999999999999999999999976321 2234466644               457999999999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.18  E-value=0.0024  Score=45.83  Aligned_cols=63  Identities=17%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCC-CCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD-GSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~-g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.|.+.+++.|++++++++++++..+ ++++.+|.+.+.   .+ |+       ..++.+|.||+|.|....
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~g~-------~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDT---QNSDN-------IESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECC---TTCCC-------CEEEECSEEEECSCEEES
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEec---cCCCc-------eEEEEcCEEEEEeCCCCC
Confidence            45556777888899999999999999874 568888887641   11 22       268999999999997654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.18  E-value=0.0024  Score=46.21  Aligned_cols=60  Identities=25%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+..+.++|.+.+++.|++++.++.|..+..+ ++ .+.|.+.+               +.++.++.||+|+|..+
T Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~-~~~v~~~~---------------g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           62 VYAKDLVKGLVEQVAPFNPVYSLGERAETLERE-GD-LFKVTTSQ---------------GNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             EEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEE-TT-EEEEEETT---------------SCEEEEEEEEECCTTSE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEEC-CC-EEEEEECC---------------CCEEEeCEEEECCCCCC
Confidence            467888889999999999999999999999875 33 33355543               35799999999999964

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.18  E-value=0.0013  Score=47.06  Aligned_cols=62  Identities=24%  Similarity=0.149  Sum_probs=49.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+++..+.++|.+.+++.|++++. +.|.++..+ ++. +.|.+.+               +.++.++.||+|+|+++..
T Consensus        55 ~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~-~~~-~~v~~~~---------------g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           55 VVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKK-DSH-FVILAED---------------GKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             CBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEE-TTE-EEEEETT---------------SCEEEEEEEEECCCEEECC
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEc-CCE-EEEEEcC---------------CCEEECCEEEECCCCCCCC
Confidence            467888999999999999999998 789999875 443 2355543               4579999999999987654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.09  E-value=0.002  Score=48.33  Aligned_cols=58  Identities=16%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|++++.|+++..+ ++ .+.|.+.+               |.++.+|.||+|+|.++..
T Consensus       188 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~---------------g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          188 AAAKAVQAGLEGLGVRFHLGPVLASLKKA-GE-GLEAHLSD---------------GEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             HHHHHHHHHHHTTTCEEEESCCEEEEEEE-TT-EEEEEETT---------------SCEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEec-CC-EEEEEECC---------------CCEEECCEEEECcCCCcCH
Confidence            45677888899999999999999999874 33 34566654               4689999999999988754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.08  E-value=0.0015  Score=50.65  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|+++++|+++..+ ++++ .|.+.+               |.++.+|.||+|+|.....
T Consensus       233 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          233 DLRQLLNDAMVAKGISIIYEATVSQVQST-ENCY-NVVLTN---------------GQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-EEEETT---------------SCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEE-EEEECC---------------CcEEEcCEEEEeeCCCcCC
Confidence            45667788889999999999999999875 4554 577754               4689999999999986543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.06  E-value=0.0023  Score=49.10  Aligned_cols=58  Identities=21%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+..++.|++|+++++|+++..+ ++++..|.+ +               |.++.+|.||+|.|.....
T Consensus       192 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~-~---------------g~~i~~D~vv~a~G~~p~~  249 (452)
T 2cdu_A          192 EFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTL-D---------------GKEIKSDIAILCIGFRPNT  249 (452)
T ss_dssp             HHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEET-T---------------SCEEEESEEEECCCEEECC
T ss_pred             hHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEe-C---------------CCEEECCEEEECcCCCCCH
Confidence            45667788889999999999999999864 577776665 3               4679999999999987653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.0015  Score=50.62  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCC-eEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g-~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+..++.|++|++++.|+++.-+++++++.|.+.+               | .++.+|.||+|.|.....
T Consensus       227 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMND---------------SKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETT---------------SCEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECC---------------CcEEEEcCEEEECCCCCCcc
Confidence            45667788888999999999999999864344356677754               4 579999999999976553

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.04  E-value=0.0021  Score=50.28  Aligned_cols=58  Identities=21%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+++.+..++.||++++++.|+++..+ ++.+ .|.+.+               |.++.+|.||+|.|....
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~d---------------G~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKD---------------GRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETT---------------SCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECC---------------CCEEECCEEEECCCCCcc
Confidence            357788889999999999999999999764 4444 677754               568999999999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.03  E-value=0.0023  Score=49.11  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+.+++.|++|+++++|+++..+ ++++ .|.+.+               + ++.+|.||+|.|....
T Consensus       190 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          190 EMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSE---------------Q-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESS---------------C-EEEESEEEECSCCBCC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECC---------------C-EEEeCEEEECcCCCCC
Confidence            45567788889999999999999999864 5676 677743               3 7999999999998654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.03  E-value=0.0032  Score=45.08  Aligned_cols=59  Identities=19%  Similarity=0.172  Sum_probs=48.4

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +....+.++|.+.+++.|++++.++.|.++..+ ++....|.+.+                .++.++.||+|+|..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~----------------g~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           64 IRAQELINNLKEQMAKFDQTICLEQAVESVEKQ-ADGVFKLVTNE----------------ETHYSKTVIITAGNG  122 (332)
T ss_dssp             EEHHHHHHHHHHHHTTSCCEEECSCCEEEEEEC-TTSCEEEEESS----------------EEEEEEEEEECCTTS
T ss_pred             CCHHHHHHHHHHHHHHhCCcEEccCEEEEEEEC-CCCcEEEEECC----------------CEEEeCEEEECCCCC
Confidence            467889999999999999999999999999885 33234467654                349999999999984

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.02  E-value=0.0018  Score=49.86  Aligned_cols=58  Identities=16%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEE-eccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-TGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~-~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|++++.|+++..+ ++.++.|. +.+               |. +.+|.||+|.|.+...
T Consensus       212 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~---------------g~-i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          212 DMRRGLHAAMEEKGIRILCEDIIQSVSAD-ADGRRVATTMKH---------------GE-IVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSCEEEEESSS---------------CE-EEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCCEEEEEEcCC---------------Ce-EEeCEEEEeeCcccCC
Confidence            45677888899999999999999999875 34445677 654               45 9999999999986543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.01  E-value=0.0017  Score=50.65  Aligned_cols=59  Identities=20%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|++++.|+++..+ ++..+.|.+.+               |.++.+|.||+|.|.+...
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~---------------G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKN-ADGTRHVVFES---------------GAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEEC-TTSCEEEEETT---------------SCEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEECC---------------CcEEEcCEEEEccCCCcCc
Confidence            45667888899999999999999999875 33335577654               4579999999999987653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.01  E-value=0.002  Score=49.29  Aligned_cols=69  Identities=14%  Similarity=0.016  Sum_probs=50.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+.+..+.++|.+.+++.+..++.+++|+++..+ ++. +.|.+.+.   .+|+.      ..++.++.||+|+|.++
T Consensus       109 ~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~-~~~-~~V~~~~~---~~G~~------~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          109 LQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGS-WVVTYKGT---KAGSP------ISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             CSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTE-EEEEEEES---STTCC------EEEEEESEEEECCCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC-CCe-EEEEEeec---CCCCe------eEEEEeCEEEECCCCCC
Confidence            345678899999999999999999999999999875 443 33555431   11210      02799999999999965

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.00  E-value=0.0025  Score=49.63  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|+++++|+++..+ ++.+ .|.+.+               |.++.+|.||+|.|.+...
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTD---------------GRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETT---------------SCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECC---------------CcEEEcCEEEECCCCCcCC
Confidence            45677888899999999999999999874 4444 455543               4689999999999988653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.99  E-value=0.003  Score=44.94  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=47.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +....+.++|.+.+++.|++++. +.|.++..+ ++. ..|.+.+               +.++.++.+|+|+|++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~-~~~-~~v~~~~---------------g~~~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           67 IQASDMIKVFNKHIEKYEVPVLL-DIVEKIENR-GDE-FVVKTKR---------------KGEFKADSVILGIGVKRR  126 (323)
T ss_dssp             EEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC---C-EEEEESS---------------SCEEEEEEEEECCCCEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEec-CCE-EEEEECC---------------CCEEEcCEEEECcCCCCc
Confidence            67788999999999999999999 899999875 444 3366643               468999999999998743

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.99  E-value=0.0023  Score=49.15  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      -..+.+.|.+.+++.| ++|+++++|++|..+ ++.+ .|.+.+               |..+.|+.||+|.|...
T Consensus       254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAA-RVTARD---------------GREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSE-EEEETT---------------CCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEE-EEEECC---------------CCEEEcCEEEECCCHHH
Confidence            3467778888999999 999999999999885 4554 366654               45799999999999653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.98  E-value=0.00043  Score=55.10  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=45.0

Q ss_pred             HHHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCC
Q psy9487          21 VKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCH   90 (101)
Q Consensus        21 d~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~   90 (101)
                      ...++..|. +.|++|++++.|++|+++++++++||++.+.   .+|+.       ..++|+ .||+|+|+.
T Consensus       211 ~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~---~~g~~-------~~i~A~k~VIlaaG~~  272 (546)
T 2jbv_A          211 SVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDS---AFGHT-------HRLTARNEVVLSTGAI  272 (546)
T ss_dssp             HHHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESS---TTSCE-------EEEEEEEEEEECSHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEEC---CCCcE-------EEEEeCccEEEecCcc
Confidence            344455554 5799999999999999963289999998651   11322       579998 999999985

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.97  E-value=0.0022  Score=51.15  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ....+..+.++|.+.+++.|+  .+..++.|+++.++++...+.|.+.+               |.++.++.||+|+|.+
T Consensus        82 ~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~---------------G~~~~ad~lV~AtG~~  146 (545)
T 3uox_A           82 NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDN---------------EEVVTCRFLISATGPL  146 (545)
T ss_dssp             SSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETT---------------TEEEEEEEEEECCCSC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECC---------------CCEEEeCEEEECcCCC
Confidence            345788899999999999998  89999999999987555566688765               5789999999999965


Q ss_pred             c
Q psy9487          91 G   91 (101)
Q Consensus        91 s   91 (101)
                      +
T Consensus       147 s  147 (545)
T 3uox_A          147 S  147 (545)
T ss_dssp             B
T ss_pred             C
Confidence            4

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.96  E-value=0.0025  Score=49.46  Aligned_cols=68  Identities=12%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             EEEhHHHHHHHHHHHHHCCCE--EecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~--i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+++..+.++|.+.+++.|++  ++.++.|+++..++++..+.|.+.+.   .+|+       ..++.++.||+|+|.++
T Consensus        97 ~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~---~~g~-------~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A           97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH---TTDT-------IYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             SCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEET---TTTE-------EEEEEESEEEECCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEc---CCCc-------eEEEEcCEEEECCCCCC
Confidence            457889999999999999998  99999999998863322345665431   1121       15799999999999643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.95  E-value=0.0021  Score=49.50  Aligned_cols=59  Identities=17%  Similarity=0.118  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.++|.+.+++.|+++++++.|+++..+ ++....|.+.+               |.++.+|.||+|+|..+..
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN-TDGSLTLELED---------------GRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC-TTSCEEEEETT---------------SCEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCcEEEEEECC---------------CcEEEcCEEEECCCCCcCC
Confidence            46677888889999999999999999874 33334566654               4579999999999987654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.94  E-value=0.0024  Score=49.95  Aligned_cols=59  Identities=20%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|++++.|.++..+ ++..+.|.+.+               |.++.+|.||+|.|.....
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~---------------G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLN-TDGSKHVTFES---------------GKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEC-TTSCEEEEETT---------------SCEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCceEEEEECC---------------CcEEEcCEEEECCCCcccc
Confidence            45667788889999999999999999874 33445677654               4589999999999987654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.91  E-value=0.00057  Score=54.30  Aligned_cols=57  Identities=14%  Similarity=0.295  Sum_probs=43.1

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEE---EccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMEL---HAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i---~A~~VI~A~G~~s   91 (101)
                      |...+++.|++|++++.|++|+++++  ++++||+..+    .+|+.       ..+   .++.||+|+|+..
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~----~~g~~-------~~~~v~a~k~VILaaGa~~  261 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD----SNGTP-------HQAFVRSKGEVIVSAGTIG  261 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEEC----TTSCE-------EEEEEEEEEEEEECCHHHH
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEe----CCCce-------EEEEeccCCEEEEcCcccC
Confidence            45567788999999999999999632  3899999864    22321       345   4689999999874

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.89  E-value=0.0031  Score=48.32  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+.+++.|++++++++|+++..+ ++. +.+.+.+               +.++.+|.||+|+|.++..
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~-v~v~~~~---------------g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKG-ARVELEG---------------GEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETT---------------SCEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECC---------------CeEEEcCEEEECcCCCcCC
Confidence            456777888899999999999999999875 333 3455543               4679999999999988754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.88  E-value=0.001  Score=53.87  Aligned_cols=62  Identities=19%  Similarity=0.312  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEec---CCcEEEEEeccccccCCCCCCcCCCCCeEEEcc-EEEEeecCCc
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHG   91 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~---~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~-~VI~A~G~~s   91 (101)
                      ....+|.....+.+++|++++.|++|++++   +++++||+..+    .+|..       .+++|+ -||+|+|+-.
T Consensus       228 aa~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~----~~G~~-------~~v~A~kEVILsAGa~~  293 (583)
T 3qvp_A          228 AAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT----HKGNT-------HNVYAKHEVLLAAGSAV  293 (583)
T ss_dssp             HHHHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEES----STTCE-------EEEEEEEEEEECSCTTT
T ss_pred             HHHHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEe----cCCcE-------EEEEECCEEEEeCCccC
Confidence            444555445566899999999999999963   57999999864    23332       578996 6999999764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.82  E-value=0.0052  Score=47.24  Aligned_cols=57  Identities=21%  Similarity=0.141  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.+++.|++|+++++|+++..+  +....|.+.+                .++.+|.||+|.|.+...
T Consensus       217 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~v~~~~----------------~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          217 AIGEAVTAAFRAEGIEVLEHTQASQVAHM--DGEFVLTTTH----------------GELRADKLLVATGRTPNT  273 (467)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEE--TTEEEEEETT----------------EEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEECC----------------cEEEcCEEEECCCCCcCC
Confidence            46677888899999999999999999864  3344566542                579999999999998763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.77  E-value=0.0029  Score=45.73  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=46.4

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+..+.++|.+.+++.|++++. ..|.++..+. ++..+.|.+.+               |.++.++.||+|+|+++.
T Consensus        62 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~---------------g~~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           62 IAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGY---------------NGEYRAKAVILATGADPR  124 (325)
T ss_dssp             BCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEES---------------SCEEEEEEEEECCCEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECC---------------CCEEEeCEEEECcCCCcC
Confidence            56788999999999999999998 5888887741 22212344433               457999999999998654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.76  E-value=0.00025  Score=52.18  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=42.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++.++-..+.++|.++|++.|++|++ ++|+++..+                            ..++|+.||+|+|+|+
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~----------------------------~~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          136 SLILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEV----------------------------AREGADVIVNCTGVWA  186 (351)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH----------------------------HHTTCSEEEECCGGGG
T ss_pred             ceEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh----------------------------hcCCCCEEEECCCcCh
Confidence            46788899999999999999999998 888776321                            1257899999999998


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       187 ~  187 (351)
T 3g3e_A          187 G  187 (351)
T ss_dssp             G
T ss_pred             H
Confidence            5

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.76  E-value=0.0046  Score=44.58  Aligned_cols=60  Identities=10%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+++++.|++++++++++++..+ ++++.+|.+.+.   .+|+       ..++.+|.||+|+|....
T Consensus       194 ~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  253 (319)
T 3cty_A          194 NAYVQEIKKRNIPYIMNAQVTEIVGD-GKKVTGVKYKDR---TTGE-------EKLIETDGVFIYVGLIPQ  253 (319)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEES-SSSEEEEEEEET---TTCC-------EEEECCSEEEECCCEEEC
T ss_pred             HHHHHHHhcCCcEEEcCCeEEEEecC-CceEEEEEEEEc---CCCc-------eEEEecCEEEEeeCCccC
Confidence            45677888999999999999999874 567888887531   1222       147999999999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.74  E-value=0.0047  Score=44.31  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             HHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+++.+. |++|++++.+.++.-+ ++++.+|.+.+.   .+|+       +.++.+|.||+|.|....
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  272 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGD-GKLLNALRIKNT---KKNE-------ETDLPVSGLFYAIGHTPA  272 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEES-SSSEEEEEEEET---TTTE-------EEEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEcc-cCcEEEEEEEEC---CCCc-------eEEEEeCEEEEEeCCCCC
Confidence            4456677665 9999999999999874 677888888651   1222       368999999999997653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.73  E-value=0.0049  Score=47.65  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCe-EEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~-~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+..++.|+++++++.|+++..+ ++. ..|.+.+               |. ++.+|.||+|+|.....
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERD-AQG-TTLVAQD---------------GTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEE-TTE-EEEEETT---------------CCEEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCe-EEEEEeC---------------CcEEEEcCEEEECCCCCcCC
Confidence            45567788889999999999999999875 333 4566654               45 79999999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.69  E-value=0.0071  Score=46.89  Aligned_cols=56  Identities=13%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.|.+.+++.|++|++++.|+++..  ++++..|.+.+                .++.+|.||+|+|....
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~----------------~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          228 DMAEYIYKEADKHHIEILTNENVKAFKG--NERVEAVETDK----------------GTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEE--SSBEEEEEETT----------------EEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHHcCcEEEcCCEEEEEEc--CCcEEEEEECC----------------CEEEcCEEEECcCCCcC
Confidence            4567788899999999999999999975  35676676642                57999999999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.68  E-value=0.00066  Score=50.12  Aligned_cols=51  Identities=12%  Similarity=0.124  Sum_probs=42.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++.++...+.++|+++|++.|++|+. ++|+++..  +         .                .  +|+.||+|+|+|+
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~--~---------~----------------~--~a~~VV~A~G~~s  185 (363)
T 1c0p_A          136 TLSVHAPKYCQYLARELQKLGATFER-RTVTSLEQ--A---------F----------------D--GADLVVNATGLGA  185 (363)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGG--T---------C----------------S--SCSEEEECCGGGG
T ss_pred             cceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhh--c---------C----------------c--CCCEEEECCCcch
Confidence            46788999999999999999999999 88888742  1         1                2  6899999999998


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       186 ~  186 (363)
T 1c0p_A          186 K  186 (363)
T ss_dssp             G
T ss_pred             h
Confidence            5

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.67  E-value=0.0032  Score=49.63  Aligned_cols=63  Identities=21%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+..+.++|.+.+++.|++++.+++|+.+..+.+ +....|.+.+               |.+++++.||+|+|++..
T Consensus       264 ~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~---------------g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          264 TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETAS---------------GAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             BCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETT---------------SCEEEEEEEEECCCEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECC---------------CCEEEcCEEEECCCCCcC
Confidence            45678889999999999999999999999975321 2234566654               468999999999998654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.65  E-value=0.00081  Score=54.11  Aligned_cols=58  Identities=21%  Similarity=0.369  Sum_probs=43.9

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCc
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG   91 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s   91 (101)
                      +|...+++.|++|++++.|++|+++++   ++++||+..+    .+|+.       ..++| +.||+|+|+..
T Consensus       236 ~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~----~~g~~-------~~v~A~k~VILaaG~~~  297 (587)
T 1gpe_A          236 WLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT----NKAVN-------FDVFAKHEVLLAAGSAI  297 (587)
T ss_dssp             HTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE----ETTEE-------EEEEEEEEEEECSCTTT
T ss_pred             HHHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEe----CCCcE-------EEEEecccEEEccCCCC
Confidence            333445568999999999999999642   4899999874    22321       57899 89999999865

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.63  E-value=0.0089  Score=46.61  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeE-EEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME-LHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~-i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.++++.-++++. ..|.+.+               |.+ +.+|.||+|.|.....
T Consensus       218 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~---------------g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          218 SVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSD---------------GRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETT---------------SCEEEEESEEEECCCBCCTT
T ss_pred             hhHHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECC---------------CcEEEECCEEEECCCCCcCC
Confidence            456677888899999999999999998642333 4566654               455 9999999999987653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.60  E-value=0.0073  Score=46.47  Aligned_cols=65  Identities=20%  Similarity=0.175  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+..++.|++|++++.|+++..++++..+.|.+.+.   .+|+       +.++.+|.||+|.|.....
T Consensus       225 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~---~~g~-------~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          225 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDT---KTNK-------QENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEET---TTTE-------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEc---CCCC-------ceEEECCEEEECCCCCcCC
Confidence            466778888999999999999999997621345556665420   0111       3679999999999987653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.58  E-value=0.0048  Score=44.10  Aligned_cols=60  Identities=17%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          21 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        21 d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..+.++.++ .|+++++++.++++.-+ ++++.+|++.+.   .+|+       ..++.+|.||+|.|...
T Consensus       182 ~~~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p  242 (310)
T 1fl2_A          182 DQVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGD-------IHNIELAGIFVQIGLLP  242 (310)
T ss_dssp             CHHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEEEET---TTCC-------EEEEECSEEEECSCEEE
T ss_pred             cHHHHHHHhhCCCeEEecCCceEEEEcC-CCcEEEEEEEEC---CCCc-------EEEEEcCEEEEeeCCcc
Confidence            3556677777 69999999999999864 678888888641   1222       15799999999999654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.54  E-value=0.0063  Score=44.66  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+-+.|.+..++.|+++++++.+.++..+ ++++.+|.+..    .+|+       ..++.+|.||+|.|....
T Consensus       203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~----~~g~-------~~~i~~D~vi~a~G~~p~  264 (360)
T 3ab1_A          203 KTAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRS----SDGS-------KWTVEADRLLILIGFKSN  264 (360)
T ss_dssp             HHHHSSHHHHHHTSEEEESSEEEEEEEEE-TTEEEEEEEEE----TTCC-------EEEEECSEEEECCCBCCS
T ss_pred             HHHHHHHHHhhcCceEEEcCcCHHHhccC-CCceEEEEEEe----cCCC-------eEEEeCCEEEECCCCCCC
Confidence            34556777888899999999999999875 67887888751    1222       157999999999997654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.54  E-value=0.0033  Score=47.86  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEE--EEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVK--GIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~--GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +...+..+.++|...+++.|++++.+++|+++..++ +++.+  .|.+.+    .+|+       ..++.++.||+|+|.
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~----g~g~-------~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          122 FYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRN----ADGE-------ELVRTTRALVVSPGG  190 (463)
T ss_dssp             SCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEE----TTSC-------EEEEEESEEEECCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEec----CCCc-------eEEEEeCEEEECCCC
Confidence            345788999999999999999999999999998742 24544  344433    1121       138999999999998


Q ss_pred             Cchh
Q psy9487          90 HGHL   93 (101)
Q Consensus        90 ~s~l   93 (101)
                      ...+
T Consensus       191 ~p~~  194 (463)
T 3s5w_A          191 TPRI  194 (463)
T ss_dssp             EECC
T ss_pred             CCCC
Confidence            5543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.53  E-value=0.0063  Score=43.84  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=45.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+..+.+.+.+.+++.|++++. ..|.++..+ ++.+. |.+.                +.++.++.+|+|+|+++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~-~~~~~-v~~~----------------~~~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           69 IVGSELAKLFADHAANYAKIREG-VEVRSIKKT-QGGFD-IETN----------------DDTYHAKYVIITTGTTHK  127 (319)
T ss_dssp             BCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEE-TTEEE-EEES----------------SSEEEEEEEEECCCEEEC
T ss_pred             cCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEe-CCEEE-EEEC----------------CCEEEeCEEEECCCCCcc
Confidence            45677888889999999999998 689999875 44332 5542                357999999999998654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.52  E-value=0.0078  Score=43.11  Aligned_cols=63  Identities=21%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+..+..+|.+.+++.|++++.++ |.++..+ ++.+. +.+...   .+         +..+.++.+|+|+|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~-~~~~~-v~~~~~---~~---------~~~~~~d~vvlAtG~~~~  143 (338)
T 3itj_A           81 LTGSELMDRMREQSTKFGTEIITET-VSKVDLS-SKPFK-LWTEFN---ED---------AEPVTTDAIILATGASAK  143 (338)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECSC-EEEEECS-SSSEE-EEETTC---SS---------SCCEEEEEEEECCCEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEc-CCEEE-EEEEec---CC---------CcEEEeCEEEECcCCCcC
Confidence            6788899999999999999999998 9998774 44443 555320   01         357999999999998654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.47  E-value=0.0036  Score=46.96  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +.+.+...+++.| +|+++++|++|..+ ++.+. |.+.+               |.++.||.||+|.|.
T Consensus       206 ~~~l~~~~~~~~g-~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          206 SADLVDAMSQEIP-EIRLQTVVTGIDQS-GDVVN-VTVKD---------------GHAFQAHSVIVATPM  257 (431)
T ss_dssp             THHHHHHHHTTCS-CEESSCCEEEEECS-SSSEE-EEETT---------------SCCEEEEEEEECSCG
T ss_pred             HHHHHHHHHhhCC-ceEeCCEEEEEEEc-CCeEE-EEECC---------------CCEEEeCEEEEecCc
Confidence            3455555566778 99999999999875 45554 77654               456999999999993

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.46  E-value=0.0081  Score=45.60  Aligned_cols=53  Identities=15%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.+..++.|++|++++.++++. +  +   +|.+.+               |.++.+|.||+|.|....
T Consensus       188 ~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~~~---------------g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          188 TLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLLDD---------------GTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEETT---------------SCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEECC---------------CCEEEcCEEEECcCCCcc
Confidence            456778888999999999999999987 4  3   566654               468999999999998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.43  E-value=0.0074  Score=42.83  Aligned_cols=53  Identities=21%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .++.|++|++++.+.++.-+ ++++.+|.+..    .+|+.       .++.+|.||+|.|....
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~----~~g~~-------~~~~~D~vv~a~G~~p~  245 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGD-KMGVAGVKVKL----KDGSI-------RDLNVPGIFTFVGLNVR  245 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEE-TTEEEEEEEEC----TTSCE-------EEECCSCEEECSCEEEC
T ss_pred             HhcCCeEEEeCcEEEEEEcC-CCcEEEEEEEc----CCCCe-------EEeecCeEEEEEcCCCC
Confidence            36789999999999999875 67888888762    22321       47999999999997543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.39  E-value=0.0085  Score=42.86  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=45.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+..+.+++.+.+++.|++++.++ |..+..+ ++.+. | +.+               +.++.++.+|+|+|+++..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~-~~~~~-v-~~~---------------~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           59 LTGPLLMERMHEHATKFETEIIFDH-INKVDLQ-NRPFR-L-NGD---------------NGEYTCDALIIATGASARY  118 (320)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECCC-EEEEECS-SSSEE-E-EES---------------SCEEEEEEEEECCCEEECC
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEee-eeEEEec-CCEEE-E-EeC---------------CCEEEcCEEEECCCCCcCC
Confidence            5677888999999999999999986 8888764 34432 3 332               3579999999999987543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.29  E-value=0.0032  Score=50.75  Aligned_cols=61  Identities=8%  Similarity=0.213  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEe---cC-CcEEEEEeccccccCCC-CCCcCCCCCeEEEc-cEEEEeecCC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYH---GD-GSVKGIATGDVGIAKDG-SPKDTFARGMELHA-KVTIFAEGCH   90 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~---~~-g~v~GV~~~~~g~~~~g-~~~~~~~~g~~i~A-~~VI~A~G~~   90 (101)
                      ....+|.....+.+++|++++.|++|+++   ++ ++++||+..+    .+| .       ..+++| +-||+|+|+-
T Consensus       209 a~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~----~~g~~-------~~~v~A~kEVILsAGai  275 (566)
T 3fim_B          209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAE----QEGAP-------TTTVCAKKEVVLSAGSV  275 (566)
T ss_dssp             HHHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEES----STTSC-------CEEEEEEEEEEECCHHH
T ss_pred             HHHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEE----CCCce-------EEEEEeeeEEEEecCCc
Confidence            34445444445679999999999999995   13 6899999875    222 2       267999 6799999954

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.27  E-value=0.006  Score=46.64  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.+.+.+++.|+++++++.|+++..  ++++..|.+.                +.++.+|.||+|+|....
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~v~~v~~~----------------~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVTD----------------KNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEES----------------SCEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCcEEEEEEC----------------CCEEECCEEEECcCCCCC
Confidence            35667788889999999999999999975  3555556653                357999999999998764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.26  E-value=0.016  Score=45.26  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEe------------------cCCcEEEEEeccccccCCCCCCcCCCCCeEEE
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYH------------------GDGSVKGIATGDVGIAKDGSPKDTFARGMELH   79 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~------------------~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~   79 (101)
                      ..+.+++.+.+++.|+++++++.++++..+                  +++++. +...+               |.++.
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~---------------g~~i~  255 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTLSN---------------GELLE  255 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEETT---------------SCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEEcC---------------CCEEE
Confidence            345667788889999999999999999763                  134433 44433               46899


Q ss_pred             ccEEEEeecCCch
Q psy9487          80 AKVTIFAEGCHGH   92 (101)
Q Consensus        80 A~~VI~A~G~~s~   92 (101)
                      +|.||+|.|....
T Consensus       256 ~D~vi~a~G~~p~  268 (565)
T 3ntd_A          256 TDLLIMAIGVRPE  268 (565)
T ss_dssp             ESEEEECSCEEEC
T ss_pred             cCEEEECcCCccc
Confidence            9999999998765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.24  E-value=0.012  Score=45.25  Aligned_cols=64  Identities=8%  Similarity=0.076  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|++|++++.|+++..+ ++..+.|...+.   .+++       +.++.+|.||+|.|.....
T Consensus       221 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~---~~~~-------~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          221 EISKNFQRILQKQGFKFKLNTKVTGATKK-SDGKIDVSIEAA---SGGK-------AEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEC-TTSCEEEEEEET---TSCC-------CEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCceEEEEEEc-CCceEEEEEEec---CCCC-------ceEEEcCEEEECcCCCcCC
Confidence            45667788889999999999999999875 333233553210   0111       4689999999999987653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.23  E-value=0.0068  Score=46.49  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHC--------CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          18 GHVVKWLGEQAEAM--------GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        18 ~~~d~~l~~~A~~~--------Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ..+.+.|++...+.        |++|+++++|++|..+ ++.+. |.+.+               |.++.|+.||+|.+.
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVT-VKTED---------------NSVYSADYVMVSASL  268 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCEE-EEETT---------------SCEEEESEEEECSCH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcEE-EEECC---------------CCEEEcCEEEEecCH
Confidence            35566666665544        7899999999999986 56655 77765               468999999999886


Q ss_pred             C
Q psy9487          90 H   90 (101)
Q Consensus        90 ~   90 (101)
                      +
T Consensus       269 ~  269 (472)
T 1b37_A          269 G  269 (472)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.18  E-value=0.0078  Score=43.81  Aligned_cols=60  Identities=20%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEE-EeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV-~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+..+.++|.+.+++.|++++.++ |.++.. ++.  ..| .+.+               +.++.++.||+|+|+++..
T Consensus        68 ~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~--~~v~~~~~---------------g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           68 ITGPELMDEMREQALRFGADLRMED-VESVSL-HGP--LKSVVTAD---------------GQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             BCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSS--SEEEEETT---------------SCEEEEEEEEECCCEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCc--EEEEEeCC---------------CCEEEeCEEEECCCCCccC
Confidence            5677888899999999999999997 888765 222  223 4433               3579999999999987643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.18  E-value=0.027  Score=40.59  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.|.+..++.|+++++++.+.++.-  ++++.+|.+...   .+|+       ..++.+|.||+|.|....
T Consensus       191 ~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  253 (335)
T 2zbw_A          191 EASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHN---QTQE-------ELALEVDAVLILAGYITK  253 (335)
T ss_dssp             HHHHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEEEET---TTCC-------EEEEECSEEEECCCEEEE
T ss_pred             HHHHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEEEEC---CCCc-------eEEEecCEEEEeecCCCC
Confidence            34556677778888999999999999976  467777877531   1222       157999999999997764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.14  E-value=0.0054  Score=49.49  Aligned_cols=52  Identities=17%  Similarity=0.412  Sum_probs=40.1

Q ss_pred             HHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEc-cEEEEeecCCc
Q psy9487          29 EAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG   91 (101)
Q Consensus        29 ~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A-~~VI~A~G~~s   91 (101)
                      .+.+++|++++.|++|++++ +++++||+..+    .+|..       .+++| +-||+|+|+-.
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~----~~g~~-------~~v~A~keVILsaGa~~  270 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVT----AAGNE-------LNFFADREVILSQGVFE  270 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEE----TTSCE-------EEEEEEEEEEECSHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEe----CCCcE-------EEEEeeeEEEEcccccC
Confidence            34689999999999999964 57999999875    22332       57889 56999999653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.12  E-value=0.014  Score=42.65  Aligned_cols=54  Identities=9%  Similarity=0.167  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      -+.+.+..-++..|++|+++++|++|..+ ++.+. |.+.+               |..+.++.||+|..+
T Consensus       110 g~~~l~~~l~~~~g~~i~~~~~V~~i~~~-~~~~~-v~~~~---------------g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          110 GISSIIKHYLKESGAEVYFRHRVTQINLR-DDKWE-VSKQT---------------GSPEQFDLIVLTMPV  163 (342)
T ss_dssp             CTTHHHHHHHHHHTCEEESSCCEEEEEEC-SSSEE-EEESS---------------SCCEEESEEEECSCH
T ss_pred             CHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCEEE-EEECC---------------CCEEEcCEEEECCCH
Confidence            33444344444559999999999999985 55544 66654               345899999999764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.10  E-value=0.023  Score=43.58  Aligned_cols=62  Identities=10%  Similarity=0.067  Sum_probs=44.3

Q ss_pred             HHHHHHHHHH-HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A-~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.|.+.. ++.|++|++++.|+++..+ ++. +.|.+.+    .+|+       ..++.+|.||+|.|.....
T Consensus       216 ~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~----~~g~-------~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          216 DVTNALVGALAKNEKMKFMTSTKVVGGTNN-GDS-VSLEVEG----KNGK-------RETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HHHHHHHHHHHHHTCCEEECSCEEEEEEEC-SSS-EEEEEEC----C----------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHhhcCCcEEEeCCEEEEEEEc-CCe-EEEEEEc----CCCc-------eEEEECCEEEECCCcccCC
Confidence            4566778888 8999999999999999874 333 3355431    1121       1579999999999987653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.09  E-value=0.0079  Score=46.67  Aligned_cols=53  Identities=15%  Similarity=-0.038  Sum_probs=39.9

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++...-+++.|++|+++++|++|..+ ++++. |.+.+               |.++.||.||+|.+.+.
T Consensus       216 ~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          216 QVSERIMDLLGDRVKLERPVIYIDQT-RENVL-VETLN---------------HEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHHGGGEESSCCEEEEECS-SSSEE-EEETT---------------SCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHHcCCcEEcCCeeEEEEEC-CCeEE-EEECC---------------CeEEEeCEEEECCCHHH
Confidence            33333445568999999999999885 56665 77654               46899999999988764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.09  E-value=0.013  Score=45.49  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|++|++++.++++..  ++++..|.+ +               +.++.+|.||+|.|.....
T Consensus       237 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~-~---------------g~~i~~D~Vi~a~G~~p~~  293 (490)
T 2bc0_A          237 DLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIIT-D---------------KNEYDVDMVILAVGFRPNT  293 (490)
T ss_dssp             HHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEE-S---------------SCEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEE-C---------------CcEEECCEEEECCCCCcCh
Confidence            4556778888999999999999999874  456656665 3               3679999999999976543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.05  E-value=0.0088  Score=46.92  Aligned_cols=72  Identities=10%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCC------cEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG------SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI   84 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g------~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI   84 (101)
                      ..+...|..|.++|..-|+..+..|..+++|+++.+++++      ...-|++.+   ..+|+       ..++.|+.||
T Consensus       138 ~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~---~~~g~-------~~~~~ar~vV  207 (501)
T 4b63_A          138 STFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRN---VETGE-------ISARRTRKVV  207 (501)
T ss_dssp             CCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEE---TTTCC-------EEEEEEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEec---CCCce-------EEEEEeCEEE
Confidence            3466889999999999999999889999999999886432      245677654   12333       3679999999


Q ss_pred             EeecCCch
Q psy9487          85 FAEGCHGH   92 (101)
Q Consensus        85 ~A~G~~s~   92 (101)
                      +|+|....
T Consensus       208 latG~~P~  215 (501)
T 4b63_A          208 IAIGGTAK  215 (501)
T ss_dssp             ECCCCEEC
T ss_pred             ECcCCCCC
Confidence            99996433

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.02  E-value=0.006  Score=47.65  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=41.1

Q ss_pred             HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +++++.||+|++++.|.++.-  ++++.+|.+.+               |.++.+|.||+|.|.+..
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~---------------g~~i~aD~Vv~a~G~~p~  314 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEG--NEKVERVIDMN---------------NHEYKVDALIFADGRRPD  314 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEEC--SSSCCEEEETT---------------CCEEECSEEEECCCEEEC
T ss_pred             HHHHhCCcEEEeCCeeEEEec--CCceEEEEeCC---------------CeEEEeCEEEECCCcCcC
Confidence            677889999999999999974  35666777654               468999999999998765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.00  E-value=0.02  Score=40.16  Aligned_cols=61  Identities=18%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             EEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          15 VRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~-Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .....+.+++.+.+++. +++++.+ +|+++..+ ++. ..|.+.+               +.++.++.||+|+|+.+..
T Consensus        53 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~-~~~-~~v~~~~---------------g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           53 KAPGEIIAEARRQIERYPTIHWVEG-RVTDAKGS-FGE-FIVEIDG---------------GRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             CCHHHHHHHHHHHHTTCTTEEEEES-CEEEEEEE-TTE-EEEEETT---------------SCEEEEEEEEECCCCEEEC
T ss_pred             CCHHHHHHHHHHHHHhcCCeEEEEe-EEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECCCCCCCC
Confidence            56678888999999987 7888765 89999875 333 4466654               4679999999999997643

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=95.86  E-value=0.0096  Score=48.26  Aligned_cols=53  Identities=15%  Similarity=0.368  Sum_probs=41.3

Q ss_pred             CCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          31 MGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        31 ~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .|++|++++.|++|+.+++ ++++||++.+.   ++|+.       .++.|+.||+|+|+....
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~---~~g~~-------~~i~A~~VIlaaG~~~s~  326 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDL---ISGDR-------FEIKADVYVLTAGAVHNT  326 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEET---TTCCE-------EEECEEEEEECSCTTHHH
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEECCEEEEcCCCcCCH
Confidence            4899999999999999632 38999998751   23332       589999999999976544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.82  E-value=0.021  Score=45.21  Aligned_cols=57  Identities=12%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+..++.|++|++++.|+++..+ ++   +|.+.+               |.++.+|.||+|.|.....
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~---------------g~~i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA---VVRLKS---------------GSVIQTDMLILAIGVQPES  284 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT---EEEETT---------------SCEEECSEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC---EEEECC---------------CCEEEcCEEEEccCCCCCh
Confidence            345677788899999999999999999653 23   466654               4689999999999987643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=95.75  E-value=0.026  Score=43.52  Aligned_cols=63  Identities=17%  Similarity=0.228  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++.|++|++++.+.++..++++.+ .|.+.+.   .+++       ..++.+|.||+|.|....
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~---~~~~-------~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          228 QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNV---ETGE-------ESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEET---TTCC-------EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecC---CCCc-------eeEEEcCEEEECcccccC
Confidence            4566778888999999999999999987534444 4666541   1122       247999999999997654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.69  E-value=0.035  Score=42.46  Aligned_cols=60  Identities=12%  Similarity=0.179  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++.|+++++++.|+++..+ ++. +.|.+.+     +|+       +.++.+|.||+|+|....
T Consensus       212 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~-----~g~-------~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          212 QMAAIIKKRLKKKGVEVVTNALAKGAEER-EDG-VTVTYEA-----NGE-------TKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTE-EEEEEEE-----TTE-------EEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCe-EEEEEEe-----CCc-------eeEEEcCEEEECcCCCcc
Confidence            45667788889999999999999999864 333 3354431     111       367999999999998764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.68  E-value=0.045  Score=41.99  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++.|++|++++.++++..+ ++.+. |.+.+    .+|        ..++.+|.||+|.|....
T Consensus       222 ~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~-~~~~~-v~~~~----~~g--------~~~~~~D~vi~a~G~~p~  281 (476)
T 3lad_A          222 QVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVT-VKFVD----AEG--------EKSQAFDKLIVAVGRRPV  281 (476)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEE-EEEES----SSE--------EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCEEE-EEEEe----CCC--------cEEEECCEEEEeeCCccc
Confidence            45667778889999999999999999875 44443 55543    111        157999999999997654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.68  E-value=0.018  Score=43.19  Aligned_cols=54  Identities=17%  Similarity=0.243  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.+.+..++.||++++++.++++.-  +    +|.+.+               |.++.+|.||+|.|....
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~---------------g~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEK---------------GNTIPADITILLPPYTGN  271 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETT---------------SCEEECSEEEEECCEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECC---------------CCEEeeeEEEECCCCCcc
Confidence            45777888889999999999999999842  2    266654               568999999999997653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=95.63  E-value=0.014  Score=43.86  Aligned_cols=42  Identities=14%  Similarity=0.303  Sum_probs=33.4

Q ss_pred             CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          33 VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        33 v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++|+++++|++|..+ ++.+ .|.+.+               |.++.|+.||+|...+.
T Consensus       248 ~~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHS-GSCY-SLELDN---------------GVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             EEEECSCCEEEEEEC-SSSE-EEEESS---------------SCEEEESEEEECSCHHH
T ss_pred             CEEEeCCceEEEEEc-CCeE-EEEECC---------------CCEEECCEEEECCCHHH
Confidence            799999999999986 4554 477754               45799999999987554

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.56  E-value=0.072  Score=41.13  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|++|++++.+.++..+ ++. +.|.+.+.   .+|+       ..++.+|.||+|.|.....
T Consensus       240 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~v~~~~~---~~g~-------~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          240 EVAKQLQRMLTKQGIDFKLGAKVTGAVKS-GDG-AKVTFEPV---KGGE-------ATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTE-EEEEEEET---TSCC-------CEEEEESEEEECCCCEECC
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEEe-CCE-EEEEEEec---CCCc-------eEEEEcCEEEEeeCCccCC
Confidence            45667788889999999999999999875 343 33555431   1122       2689999999999986543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.54  E-value=0.021  Score=43.07  Aligned_cols=47  Identities=21%  Similarity=0.359  Sum_probs=35.8

Q ss_pred             HHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          27 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        27 ~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      -++++|++|+++++|++|..+ ++..+.|.+ +               +.++.|+.||+|.+.+
T Consensus       221 l~~~lg~~i~~~~~V~~i~~~-~~~~v~v~~-~---------------~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          221 MAEALGDDVFLNAPVRTVKWN-ESGATVLAD-G---------------DIRVEASRVILAVPPN  267 (453)
T ss_dssp             HHHHHGGGEECSCCEEEEEEE-TTEEEEEET-T---------------TEEEEEEEEEECSCGG
T ss_pred             HHHhcCCcEEcCCceEEEEEe-CCceEEEEE-C---------------CeEEEcCEEEEcCCHH
Confidence            344568999999999999986 554233654 2               4689999999998876

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.52  E-value=0.06  Score=41.41  Aligned_cols=64  Identities=13%  Similarity=0.084  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+..++.|+++++++.|+++..+ ++. +.|.+.+.   .+|+.       .++.+|.||+|+|..+..
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~~---~~g~~-------~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKK-KDG-LHVRLEPA---EGGEG-------EEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTE-EEEEEEET---TCCSC-------EEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEe-CCE-EEEEEeec---CCCce-------eEEEcCEEEECCCcccCC
Confidence            356677788889999999999999999874 443 33555320   11221       379999999999987654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.52  E-value=0.067  Score=41.09  Aligned_cols=66  Identities=20%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++.|++|++++.++++..++++..+.|.+.+.+   +|+.     .|.++.+|.||+|.|....
T Consensus       229 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~---~g~~-----~g~~~~~D~vi~a~G~~p~  294 (478)
T 3dk9_A          229 MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPG---RLPV-----MTMIPDVDCLLWAIGRVPN  294 (478)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTT---SCCE-----EEEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCC---CCcc-----cceEEEcCEEEEeeccccC
Confidence            4556778888999999999999999987534423446665311   1110     0257999999999997654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.49  E-value=0.057  Score=41.33  Aligned_cols=60  Identities=23%  Similarity=0.284  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.+..++.|+++++++.++++.-+ ++.+ .|.+.+     +|+       ..++.+|.||+|.|....
T Consensus       213 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~-----~g~-------~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          213 DVSKEIEKQFKKLGVTILTATKVESIADG-GSQV-TVTVTK-----DGV-------AQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCEEEEEEEC-SSCE-EEEEES-----SSC-------EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEc-CCeE-EEEEEc-----CCc-------eEEEEcCEEEECCCCCcc
Confidence            45567788888999999999999999864 3443 355431     121       257999999999998754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.44  E-value=0.048  Score=38.54  Aligned_cols=57  Identities=21%  Similarity=0.184  Sum_probs=42.0

Q ss_pred             HHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+++.+ .||++++++.++++.-  ++++.+|.+.+.   .+|+.       .++.+|.||+|.|....
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~---~~g~~-------~~~~~D~vv~a~G~~p~  252 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENL---KTGEI-------KELNVNGVFIEIGFDPP  252 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEET---TTCCE-------EEEECSEEEECCCEECC
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEec--cCceeEEEEEEC---CCCce-------EEEEcCEEEEEECCCCC
Confidence            4555555 4999999999999976  367778887641   12321       47999999999997765

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=95.44  E-value=0.018  Score=44.50  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          18 GHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        18 ~~~d~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +....++...++ ..+..|++++.|.+++++ +++++||+....+    +        ...+.|+.||+|+|+-
T Consensus       210 s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~~~----~--------~~~~~a~~VILsAGai  270 (526)
T 3t37_A          210 TAADAWLTKAVRGRKNLTILTGSRVRRLKLE-GNQVRSLEVVGRQ----G--------SAEVFADQIVLCAGAL  270 (526)
T ss_dssp             CHHHHHSCHHHHTCTTEEEECSCEEEEEEEE-TTEEEEEEEEETT----E--------EEEEEEEEEEECSHHH
T ss_pred             ccccccccccccCCCCeEEEeCCEEEEEEec-CCeEEEEEEEecC----c--------eEEEeecceEEccccc
Confidence            334444433333 467999999999999996 7899999987522    1        2578999999999953

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.42  E-value=0.076  Score=40.28  Aligned_cols=50  Identities=12%  Similarity=-0.007  Sum_probs=36.3

Q ss_pred             CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .|++|++++.|+++..+ ++. +.|.+.+.   .+|+.       .++.+|.||+|+|....
T Consensus       329 ~~v~i~~~~~v~~v~~~-~~~-~~v~~~~~---~~g~~-------~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATAT-AQG-IELALRDA---GSGEL-------SVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEE-TTE-EEEEEEET---TTCCE-------EEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEec-CCE-EEEEEEEc---CCCCe-------EEEECCEEEEeeCCCCC
Confidence            69999999999999875 333 44666531   13332       46999999999998754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=95.36  E-value=0.013  Score=44.53  Aligned_cols=62  Identities=18%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEe---ccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          13 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT---GDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        13 ~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~---~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +..-+.-+.+....-++.+|++|+++++|++|..+ +++ +.|.+   .+               |.++.|+.||+|.+.
T Consensus       230 ~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~---------------g~~~~ad~vV~a~~~  292 (478)
T 2ivd_A          230 LSTFDGGLQVLIDALAASLGDAAHVGARVEGLARE-DGG-WRLIIEEHGR---------------RAELSVAQVVLAAPA  292 (478)
T ss_dssp             EEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC---C-CEEEEEETTE---------------EEEEECSEEEECSCH
T ss_pred             EEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEec-CCe-EEEEEeecCC---------------CceEEcCEEEECCCH
Confidence            33333334444333444558899999999999885 444 45766   33               467999999999987


Q ss_pred             Cc
Q psy9487          90 HG   91 (101)
Q Consensus        90 ~s   91 (101)
                      +.
T Consensus       293 ~~  294 (478)
T 2ivd_A          293 HA  294 (478)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.34  E-value=0.051  Score=39.05  Aligned_cols=60  Identities=17%  Similarity=0.189  Sum_probs=43.0

Q ss_pred             HHHHHHH-HHCCCEEecCCceeEEEEecCC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQA-EAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A-~~~Gv~i~~gt~v~~i~~~~~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+++ ++.|+++++++.+.++.-+ ++  ++.+|.+.+.   .+|+       ..++.+|.||+|.|....
T Consensus       198 ~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          198 KIMQQRALSNPKIDVIWNSSVVEAYGD-GERDVLGGLKVKNV---VTGD-------VSDLKVSGLFFAIGHEPA  260 (333)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEES-SSSSSEEEEEEEET---TTCC-------EEEEECSEEEECSCEEES
T ss_pred             HHHHHHHHhCCCeeEecCCceEEEeCC-CCccceeeEEEEec---CCCc-------eEEEecCEEEEEeCCccc
Confidence            3444444 5789999999999999874 43  7777877531   1222       267999999999997654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=95.33  E-value=0.043  Score=41.68  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=41.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+..-+.-+.+....-++.++ ++|+++++|++|..+ ++.+ .|.+.+               | ++.|+.||+|.+++
T Consensus       227 ~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g-~~~ad~vV~a~p~~  288 (475)
T 3lov_A          227 QFLSLETGLESLIERLEEVLERSEIRLETPLLAISRE-DGRY-RLKTDH---------------G-PEYADYVLLTIPHP  288 (475)
T ss_dssp             SEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEE-TTEE-EEECTT---------------C-CEEESEEEECSCHH
T ss_pred             cEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEe-CCEE-EEEECC---------------C-eEECCEEEECCCHH
Confidence            344444434444333344444 799999999999986 4554 377654               4 69999999998765


Q ss_pred             c
Q psy9487          91 G   91 (101)
Q Consensus        91 s   91 (101)
                      .
T Consensus       289 ~  289 (475)
T 3lov_A          289 Q  289 (475)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.32  E-value=0.029  Score=41.95  Aligned_cols=53  Identities=13%  Similarity=0.141  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.....++..+.+|+++++|++|..+ ++++. |.+.+               | ++.||.||+|.+++.
T Consensus       206 ~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v~-v~~~~---------------g-~~~ad~Vv~a~~~~~  258 (424)
T 2b9w_A          206 QAMFEHLNATLEHPAERNVDITRITRE-DGKVH-IHTTD---------------W-DRESDVLVLTVPLEK  258 (424)
T ss_dssp             HHHHHHHHHHSSSCCBCSCCEEEEECC-TTCEE-EEESS---------------C-EEEESEEEECSCHHH
T ss_pred             HHHHHHHHHhhcceEEcCCEEEEEEEE-CCEEE-EEECC---------------C-eEEcCEEEECCCHHH
Confidence            333344456677899999999999885 56665 77654               3 489999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.32  E-value=0.049  Score=38.73  Aligned_cols=60  Identities=13%  Similarity=0.052  Sum_probs=43.0

Q ss_pred             HHHHHHHH-HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~-~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+++. +.|+++++++.++++..+ ++++.+|.+.+.   .+|+       ..++.+|.||+|.|....
T Consensus       182 ~~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  242 (311)
T 2q0l_A          182 PITLEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNT---ATNE-------KRELVVPGFFIFVGYDVN  242 (311)
T ss_dssp             HHHHHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEET---TTCC-------EEEEECSEEEECSCEEEC
T ss_pred             HHHHHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEec---CCCc-------eEEEecCEEEEEecCccC
Confidence            34556665 479999999999999874 467777877531   1222       147999999999997654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.31  E-value=0.037  Score=42.31  Aligned_cols=62  Identities=13%  Similarity=0.125  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.|.+..++.|++|++++.|.++..+ ++. +.|.+.+   ..+|+       +.++.+|.||+|.|....
T Consensus       219 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---~~~g~-------~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          219 EIRKQFQRSLEKQGMKFKLKTKVVGVDTS-GDG-VKLTVEP---SAGGE-------QTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHHHHHHHHSSCCEECSEEEEEEECS-SSS-EEEEEEE---SSSCC-------CEEEEESEEECCCCEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCe-EEEEEEe---cCCCc-------ceEEECCEEEECCCCCcC
Confidence            45667788889999999999999999764 333 3355432   01222       268999999999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.23  E-value=0.058  Score=38.78  Aligned_cols=59  Identities=20%  Similarity=0.132  Sum_probs=43.0

Q ss_pred             HHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+++.+ .|++|++++.++++..  ++++.+|.+.+.   .+|+       ..++.+|.||+|.|....
T Consensus       191 ~~~~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          191 KVAQARAFANPKMKFIWDTAVEEIQG--ADSVSGVKLRNL---KTGE-------VSELATDGVFIFIGHVPN  250 (325)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEET---TTCC-------EEEEECSEEEECSCEEES
T ss_pred             hHHHHHHHhcCCceEecCCceEEEcc--CCcEEEEEEEEC---CCCc-------EEEEEcCEEEEccCCCCC
Confidence            445666655 6999999999999976  467778887631   1232       147999999999997654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.13  E-value=0.047  Score=42.93  Aligned_cols=61  Identities=11%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+-+++.+..++.||+|++++.|+++.  +++.+..+...+      |+.     .+.+|.++.||.|+|...
T Consensus       272 ~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~d------g~~-----~~~~i~ad~viwa~Gv~~  332 (502)
T 4g6h_A          272 KKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHED------GKI-----TEETIPYGTLIWATGNKA  332 (502)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTT------SCE-----EEEEEECSEEEECCCEEC
T ss_pred             HHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecC------ccc-----ceeeeccCEEEEccCCcC
Confidence            3455667788889999999999999984  233333333322      221     025799999999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.08  E-value=0.046  Score=38.93  Aligned_cols=56  Identities=16%  Similarity=0.145  Sum_probs=41.7

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+++++.|+++++++.+.++.-+  +.+.+|.+.+.   .+++       +.++.+|.||+|.|....
T Consensus       196 ~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~-------~~~~~~D~vv~a~G~~p~  251 (332)
T 3lzw_A          196 VENLHASKVNVLTPFVPAELIGE--DKIEQLVLEEV---KGDR-------KEILEIDDLIVNYGFVSS  251 (332)
T ss_dssp             HHHHHHSSCEEETTEEEEEEECS--SSCCEEEEEET---TSCC-------EEEEECSEEEECCCEECC
T ss_pred             HHHHhcCCeEEEeCceeeEEecC--CceEEEEEEec---CCCc-------eEEEECCEEEEeeccCCC
Confidence            45678899999999999999753  33666777641   1222       368999999999997653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.90  E-value=0.036  Score=41.54  Aligned_cols=53  Identities=23%  Similarity=0.359  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+++.+..++.|+++++++.++++.   ..   +|.+.+               |. +.+|.||+|.|.....
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~---~~---~v~~~~---------------g~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEAN---EE---GVLTNS---------------GF-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEEC---SS---EEEETT---------------EE-EECSCEEEECCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEE---ee---EEEECC---------------CE-EEcCEEEECcCCCcCH
Confidence            566778888999999999999999985   12   466654               45 9999999999987653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=94.87  E-value=0.014  Score=47.44  Aligned_cols=56  Identities=13%  Similarity=0.052  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ...|.+.+++.||+|+++++|+++.-  ++  ..++...     +++       +.++.+|.||+|.|....
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~--~~v~~~~-----~~~-------~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVGA--GG--VTVRDTY-----ASI-------ERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEET--TE--EEEEETT-----TCC-------EEEEECSEEEEESCEEEC
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEEC--Ce--EEEEEcc-----CCe-------EEEEECCEEEECCCCCCC
Confidence            45677888999999999999999863  22  2233221     111       468999999999998654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=94.78  E-value=0.097  Score=40.44  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.+.++...+++.+ .|...+.   .+|+       ..++.+|.||+|.|.....
T Consensus       226 ~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~---~~g~-------~~~~~~D~vi~a~G~~p~~  289 (488)
T 3dgz_A          226 QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDH---ASGK-------EDTGTFDTVLWAIGRVPET  289 (488)
T ss_dssp             HHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEET---TTTE-------EEEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeC---CCCe-------eEEEECCEEEEcccCCccc
Confidence            4567778888999999999999999976433433 3555431   1121       1358999999999976543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.76  E-value=0.065  Score=41.60  Aligned_cols=66  Identities=17%  Similarity=0.150  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHH--------------CCCEEecCCceeEEEEecCC-cEEEEEecccccc---------CCCCCCcCCCCC
Q psy9487          20 VVKWLGEQAEA--------------MGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIA---------KDGSPKDTFARG   75 (101)
Q Consensus        20 ~d~~l~~~A~~--------------~Gv~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~---------~~g~~~~~~~~g   75 (101)
                      +.+.|.+.+++              .|++|++++.+.+|.-++++ ++.+|++.+....         .+|+       .
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~-------~  317 (460)
T 1cjc_A          245 LMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGD-------V  317 (460)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEE-------E
T ss_pred             HHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCc-------e
Confidence            44556666666              89999999999999764236 8888876531100         0111       2


Q ss_pred             eEEEccEEEEeecCCch
Q psy9487          76 MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        76 ~~i~A~~VI~A~G~~s~   92 (101)
                      .++.++.||.|.|..+.
T Consensus       318 ~~i~~d~Vi~a~G~~p~  334 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSR  334 (460)
T ss_dssp             EEEECSEEEECCCEECC
T ss_pred             EEEEcCEEEECCCCCCC
Confidence            58999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.73  E-value=0.069  Score=41.94  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             HHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          22 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        22 ~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+.++.++ .|+++++++.++++.-+ ++++.+|.+.+.   .+|+.       .++.++.||+|.|...
T Consensus       394 ~~l~~~l~~~~gV~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~-------~~i~~D~vi~a~G~~p  453 (521)
T 1hyu_A          394 QVLQDKVRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGDI-------HSVALAGIFVQIGLLP  453 (521)
T ss_dssp             HHHHHHHTTCTTEEEECSEEEEEEEEC-SSSEEEEEEEET---TTCCE-------EEEECSEEEECCCEEE
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEcC-CCcEEEEEEEeC---CCCce-------EEEEcCEEEECcCCCC
Confidence            456677777 59999999999999864 678888888641   12321       4799999999999654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=94.57  E-value=0.041  Score=38.57  Aligned_cols=51  Identities=12%  Similarity=-0.029  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +...+.+..++.|++++. ++++++.-  ++   +|.+.+               |.++.+|.||+|.|...
T Consensus       176 ~~~~~~~~l~~~gv~i~~-~~v~~i~~--~~---~v~~~~---------------g~~~~~D~vi~a~G~~p  226 (297)
T 3fbs_A          176 PDADQHALLAARGVRVET-TRIREIAG--HA---DVVLAD---------------GRSIALAGLFTQPKLRI  226 (297)
T ss_dssp             CCHHHHHHHHHTTCEEEC-SCEEEEET--TE---EEEETT---------------SCEEEESEEEECCEEEC
T ss_pred             CCHHHHHHHHHCCcEEEc-ceeeeeec--CC---eEEeCC---------------CCEEEEEEEEEccCccc
Confidence            566778888999999996 88888853  22   566654               56899999999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.53  E-value=0.069  Score=41.20  Aligned_cols=62  Identities=13%  Similarity=-0.023  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|++|++++.|.++..+ ++ ...|.+.+.    +++       |.++.+|.||+|.|.....
T Consensus       227 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~----~~~-------g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          227 DLVKVWQKQNEYRFDNIMVNTKTVAVEPK-ED-GVYVTFEGA----NAP-------KEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             HHHHHHHHHHGGGEEEEECSCEEEEEEEE-TT-EEEEEEESS----SCC-------SSCEEESCEEECCCEEECG
T ss_pred             HHHHHHHHHHHhcCCEEEECCEEEEEEEc-CC-eEEEEEecc----CCC-------ceEEEcCEEEECcCCCcCC
Confidence            45567788888999999999999999864 33 344665421    010       2468899999999987653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.28  E-value=0.079  Score=40.09  Aligned_cols=49  Identities=12%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+..++.|++++++++|+++..+ +.   .|.+.+               |.++.+|.+|+|+|+..
T Consensus        68 ~~~~~~~~~i~~~~~~~V~~id~~-~~---~v~~~~---------------g~~~~yd~lvlAtG~~p  116 (385)
T 3klj_A           68 KNDWYEKNNIKVITSEFATSIDPN-NK---LVTLKS---------------GEKIKYEKLIIASGSIA  116 (385)
T ss_dssp             CHHHHHHTTCEEECSCCEEEEETT-TT---EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             CHHHHHHCCCEEEeCCEEEEEECC-CC---EEEECC---------------CCEEECCEEEEecCCCc
Confidence            345567889999999999999764 33   245544               46899999999999754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.21  E-value=0.17  Score=40.43  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+..++.|+++++++.+..+..+ ++.+. |.+.+               +.++.+|.|++|.|.....
T Consensus       265 i~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~~~-v~~~~---------------~~~~~~D~vLvAvGR~Pnt  321 (542)
T 4b1b_A          265 CAVKVKLYMEEQGVMFKNGILPKKLTKM-DDKIL-VEFSD---------------KTSELYDTVLYAIGRKGDI  321 (542)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEEE-TTEEE-EEETT---------------SCEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHhhcceeecceEEEEEEec-CCeEE-EEEcC---------------CCeEEEEEEEEcccccCCc
Confidence            4556788889999999999999999875 44433 66654               3578899999999976543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=94.17  E-value=0.21  Score=38.80  Aligned_cols=60  Identities=10%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++. ++|++++.++++..+ ++.+. |...+    .+|+.       .++.+|.||+|.|....
T Consensus       216 ~~~~~l~~~l~~~-V~i~~~~~v~~i~~~-~~~v~-v~~~~----~~G~~-------~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          216 EMKRYAEKTFNEE-FYFDAKARVISTIEK-EDAVE-VIYFD----KSGQK-------TTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHHHHHHHHHHTT-SEEETTCEEEEEEEC-SSSEE-EEEEC----TTCCE-------EEEEESEEEECSCCEES
T ss_pred             HHHHHHHHHHhhC-cEEEECCEEEEEEEc-CCEEE-EEEEe----CCCce-------EEEECCEEEEeeCCccC
Confidence            4555666666776 999999999999875 45554 55532    12221       57999999999998654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.16  E-value=0.12  Score=36.96  Aligned_cols=61  Identities=13%  Similarity=0.034  Sum_probs=39.4

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .-..+.+.+.+++++.+...+....+..+...+++. ..|.+.+               +.++.++.+|+|+|+...
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------g~~~~a~~liiATGs~p~  118 (304)
T 4fk1_A           58 KPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGL-FEIVTKD---------------HTKYLAERVLLATGMQEE  118 (304)
T ss_dssp             CHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSC-EEEEETT---------------CCEEEEEEEEECCCCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCc-EEEEECC---------------CCEEEeCEEEEccCCccc
Confidence            345555666777777765555555666665533333 3466654               568999999999998643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.05  E-value=0.096  Score=40.21  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+..++.|+++++++.|+++..   +. +.+...      +|+       ..++.+|.||+|+|.....
T Consensus       213 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~-v~v~~~------~G~-------~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          213 ELTAPVAESLKKLGIALHLGHSVEGYEN---GC-LLANDG------KGG-------QLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             HHHHHHHHHHHHHTCEEETTCEEEEEET---TE-EEEECS------SSC-------CCEECCSCEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEe---CC-EEEEEC------CCc-------eEEEECCEEEECcCCCcCC
Confidence            4567778888999999999999999853   33 334321      221       1579999999999987643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=93.84  E-value=0.11  Score=44.28  Aligned_cols=65  Identities=20%  Similarity=0.159  Sum_probs=44.2

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCC-CCeEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFA-RGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~-~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+++.|++|++++.+.++..+ ++++.+|++.+...+.+|.... .. ...++.||.||+|.|...
T Consensus       377 ~~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~-~~g~~~~i~aD~Vi~A~G~~~  442 (1025)
T 1gte_A          377 VELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNE-DEDQIVHLKADVVISAFGSVL  442 (1025)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEE-EEEEEEEEECSEEEECSCEEC
T ss_pred             HHHHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCccc-CCCceEEEECCEEEECCCCCC
Confidence            46788899999999999999874 7889888775321111221000 00 014799999999999854

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=93.79  E-value=0.038  Score=42.11  Aligned_cols=52  Identities=10%  Similarity=0.019  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      -..+-+.|++.+++.|++|.++++|++|..+ +++   |.+.+               |.++.|+.||.+.
T Consensus       221 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~~---v~~~~---------------G~~~~ad~vI~t~  272 (513)
T 4gde_A          221 TGGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NKT---VTLQD---------------GTTIGYKKLVSTM  272 (513)
T ss_dssp             HHHHHHHHHHTSCGGGEEESGGGCEEEEETT-TTE---EEETT---------------SCEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHhcCeeeecceEEEEEEcc-CCE---EEEcC---------------CCEEECCEEEECC
Confidence            3567777888888999999999999999874 544   34544               5789999999874

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=93.78  E-value=0.14  Score=39.18  Aligned_cols=56  Identities=14%  Similarity=0.054  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+.+++.|++++.++.+.   .+ ++. +.|.+.+      |+       ..++.++.+|+|+|+.+..
T Consensus        93 l~~~l~~~~~~~gv~~~~g~~~~---id-~~~-v~V~~~~------G~-------~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           93 RVAGVHFLMKKNKITEIHGYGTF---AD-ANT-LLVDLND------GG-------TESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECEEEEE---SS-SSE-EEEEETT------SC-------CEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHhCCCEEEEeEEEE---ec-CCe-EEEEeCC------Cc-------eEEEEcCEEEECCCCCCCC
Confidence            33445677788999999987643   33 333 3355433      11       0579999999999997654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.76  E-value=0.13  Score=39.18  Aligned_cols=54  Identities=15%  Similarity=0.087  Sum_probs=35.4

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.+++.|++++.++.+.   .+ .+. +.|.+.+      |+       ..+++++.+|+|+|+++..
T Consensus       100 ~~~~~~~~~~gv~~~~g~~~~---~~-~~~-~~v~~~~------G~-------~~~i~~d~lIiAtGs~p~~  153 (470)
T 1dxl_A          100 RGIEGLFKKNKVTYVKGYGKF---VS-PSE-ISVDTIE------GE-------NTVVKGKHIIIATGSDVKS  153 (470)
T ss_dssp             HHHHHHHHHHTCEEEESCEEE---EE-TTE-EEECCSS------SC-------CEEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHhCCCEEEEeEEEE---ec-CCE-EEEEeCC------Cc-------eEEEEcCEEEECCCCCCCC
Confidence            334566777899999998653   33 332 2344322      11       1579999999999987654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.72  E-value=0.23  Score=36.02  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=39.2

Q ss_pred             HHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEE-ccEEEEeecCCchh
Q psy9487          22 KWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH-AKVTIFAEGCHGHL   93 (101)
Q Consensus        22 ~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~-A~~VI~A~G~~s~l   93 (101)
                      +++.+..++.| +++++++.+.++..+ ++. ..|.+.+               |.++. +|.||.|+|.....
T Consensus       218 ~~l~~~l~~~g~v~~~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          218 QRLGNVIKQGARIEMNVHYTVKDIDFN-NGQ-YHISFDS---------------GQSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             HHHHHHHHTTCCEEEECSCCEEEEEEE-TTE-EEEEESS---------------SCCEEESSCCEECCCBCGGG
T ss_pred             HHHHHHHhhCCcEEEecCcEEEEEEec-CCc-eEEEecC---------------CeEeccCCceEEeeccCCcc
Confidence            56666667787 999999999999764 333 3466543               33454 59999999987654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.72  E-value=0.15  Score=39.46  Aligned_cols=54  Identities=9%  Similarity=-0.014  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          20 VVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        20 ~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +.+.+..-++.+. .+|+++++|++|..+ ++..+.|++.+               |.++.||.||+|...
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~-~~~~v~v~~~~---------------g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITRE-PSKNVTVNCED---------------GTVYNADYVIITVPQ  255 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEEC-TTSCEEEEETT---------------SCEEEEEEEEECCCH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEc-CCCeEEEEECC---------------CcEEECCEEEECCCH
Confidence            4444333444443 679999999999984 34445677765               467999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.69  E-value=0.2  Score=38.14  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=34.7

Q ss_pred             HHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          28 AEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        28 A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ++.++ .+|+++++|++|..+ ++++. |.+.+.     ++       ...+.||.||+|...+
T Consensus       246 ~~~l~~~~i~~~~~V~~i~~~-~~~v~-v~~~~g-----~~-------~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          246 QDRIGTDNIVFGAEVTSMKNV-SEGVT-VEYTAG-----GS-------KKSITADYAICTIPPH  295 (489)
T ss_dssp             HHHHCGGGEETTCEEEEEEEE-TTEEE-EEEEET-----TE-------EEEEEESEEEECSCHH
T ss_pred             HHhcCCCeEEECCEEEEEEEc-CCeEE-EEEecC-----Ce-------EEEEECCEEEECCCHH
Confidence            34445 889999999999986 55554 665440     00       1579999999998654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.67  E-value=0.07  Score=40.73  Aligned_cols=48  Identities=15%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+++.|++++.+++|+.+..+ + +  .|.+.+               |.++.++.+|+|+|+...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~-~-~--~v~~~~---------------g~~~~~d~lviAtG~~p~  115 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRD-R-Q--QVILSD---------------GRALDYDRLVLATGGRPR  115 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETT-T-T--EEEETT---------------SCEEECSEEEECCCEEEC
T ss_pred             HHHHhCCCEEEeCCEEEEEECC-C-C--EEEECC---------------CCEEECCEEEEcCCCCcc
Confidence            4556789999999999998753 3 3  345543               457999999999998764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=93.53  E-value=0.14  Score=42.73  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=33.6

Q ss_pred             HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          30 AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        30 ~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      ..|++|+++++|++|..+ ++.|. |.+.+               |.++.|+.||+|..
T Consensus       541 a~gl~I~l~t~V~~I~~~-~~~v~-V~~~~---------------G~~i~Ad~VIvA~P  582 (776)
T 4gut_A          541 AEGLDIQLKSPVQCIDYS-GDEVQ-VTTTD---------------GTGYSAQKVLVTVP  582 (776)
T ss_dssp             HTTSCEESSCCEEEEECS-SSSEE-EEETT---------------CCEEEESEEEECCC
T ss_pred             HhCCcEEcCCeeEEEEEc-CCEEE-EEECC---------------CcEEEcCEEEECCC
Confidence            358999999999999985 55544 67654               46799999999974

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=93.52  E-value=0.16  Score=35.69  Aligned_cols=59  Identities=17%  Similarity=0.094  Sum_probs=43.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +....+..++.+.+++.|++++.+ +|.++ .+++ +.+. |.+..              .+ ++.++.+|+|+|+..
T Consensus        59 ~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~-v~~~~--------------~~-~~~~d~lvlAtG~~~  118 (315)
T 3r9u_A           59 MDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFT-IKLEG--------------GK-TELAKAVIVCTGSAP  118 (315)
T ss_dssp             BCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEE-EEETT--------------SC-EEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEE-EEEec--------------CC-EEEeCEEEEeeCCCC
Confidence            466788899999999999999998 88888 7521 3332 32322              03 799999999999754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.22  E-value=0.22  Score=37.92  Aligned_cols=53  Identities=19%  Similarity=0.120  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCC-eEEEccEEEEeecCCchh
Q psy9487          21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g-~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+.+++.|++++.++.+.   .+ .+. +.|.+.+               | .++.++.+|+|+|+....
T Consensus        94 ~~~~~~~~~~~gv~~~~g~~~~---id-~~~-v~V~~~~---------------G~~~i~~d~lViATGs~p~~  147 (455)
T 1ebd_A           94 TGGVEGLLKGNKVEIVKGEAYF---VD-ANT-VRVVNGD---------------SAQTYTFKNAIIATGSRPIE  147 (455)
T ss_dssp             HHHHHHHHHTTTCEEEESEEEE---EE-TTE-EEEEETT---------------EEEEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHhCCCEEEEEEEEE---cc-CCe-EEEEeCC---------------CcEEEEeCEEEEecCCCCCC
Confidence            3445667788999999998653   33 333 3355543               3 579999999999986543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=93.09  E-value=0.18  Score=38.83  Aligned_cols=57  Identities=19%  Similarity=0.132  Sum_probs=34.9

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccc-----cCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI-----AKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~-----~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+++.|++++.++.+.   .+ ++. +.|.+.+ +.     ..+|+       ..+++++.+|+|+|+++..
T Consensus       101 ~~~~~~~~gv~~~~g~~~~---~~-~~~-v~v~~~~-g~~~~~~~~~g~-------~~~i~ad~lViAtGs~p~~  162 (482)
T 1ojt_A          101 LAGMAKSRKVDVIQGDGQF---LD-PHH-LEVSLTA-GDAYEQAAPTGE-------KKIVAFKNCIIAAGSRVTK  162 (482)
T ss_dssp             HHHHHHHTTCEEEEEEEEE---EE-TTE-EEEEEEE-EEETTEEEEEEE-------EEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHhCCcEEEeeEEEE---cc-CCE-EEEEecC-CcccccccccCc-------ceEEEcCEEEECCCCCCCC
Confidence            4566778999999988654   33 333 3344332 00     00011       1479999999999998654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=93.05  E-value=0.14  Score=39.16  Aligned_cols=51  Identities=22%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeE------EEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME------LHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~------i~A~~VI~A~G~~s~   92 (101)
                      +.+.+++.|++++.++.+..   + .+ .+.|.+.+      |+.       .+      +.++.+|+|+|++++
T Consensus       102 ~~~~~~~~gv~~~~g~~~~~---~-~~-~v~V~~~~------G~~-------~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A          102 IELLFKKNKVTYYKGNGSFE---D-ET-KIRVTPVD------GLE-------GTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             HHHHHHHTTCEEEESEEEES---S-SS-EEEEECCT------TCT-------TCCSSCEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHhCCCEEEEEEEEEc---c-CC-eEEEEecC------CCc-------ccccccceEEeCEEEECcCCCCC
Confidence            55667789999999987642   2 33 33455432      110       24      999999999998763

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.93  E-value=0.18  Score=38.43  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++. +++++++.+.++.-+  +++..+.+.                +.++.+|.||+|.|....
T Consensus       191 ~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~v~~~----------------g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          191 EVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEKVVTD----------------AGEYKAELVILATGIKPN  245 (449)
T ss_dssp             HHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCEEEET----------------TEEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEEEEeC----------------CCEEECCEEEEeeCCccC
Confidence            3456667777788 999999999998653  355545442                368999999999998754

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=92.88  E-value=0.18  Score=38.30  Aligned_cols=55  Identities=16%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+++.+..++.||++++++.|+++.   .+++   ...+    .+|+       +.++.+|.||.|.|...
T Consensus       202 ~~~~l~~~l~~~GV~~~~~~~v~~v~---~~~~---~~~~----~~g~-------~~~i~~d~vi~~~G~~~  256 (430)
T 3hyw_A          202 SKRLVEDLFAERNIDWIANVAVKAIE---PDKV---IYED----LNGN-------THEVPAKFTMFMPSFQG  256 (430)
T ss_dssp             HHHHHHHHHHHTTCEEECSCEEEEEC---SSEE---EEEC----TTSC-------EEEEECSEEEEECEEEC
T ss_pred             HHHHHHHHHHhCCeEEEeCceEEEEe---CCce---EEEe----eCCC-------ceEeecceEEEeccCCC
Confidence            44566777788999999999999983   3332   2222    2222       36899999999999664

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=92.82  E-value=0.24  Score=42.02  Aligned_cols=61  Identities=23%  Similarity=0.283  Sum_probs=43.0

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccccc-CCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA-KDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~-~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+++++.|++|++++.+.++.-++++++.+|++.+.... .+|+       ..++.+|.||+|.|....
T Consensus       323 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~-------~~~i~~D~Vv~a~G~~P~  384 (965)
T 2gag_A          323 AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGG-------TQRFEADVLAVAGGFNPV  384 (965)
T ss_dssp             HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEE-------EEEEECSEEEEECCEEEC
T ss_pred             HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCc-------eEEEEcCEEEECCCcCcC
Confidence            567788999999999999997621467888887641000 0011       167999999999997544

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.65  E-value=0.13  Score=39.92  Aligned_cols=63  Identities=21%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             HHHHHHHHHH------CCCEEecCCceeEEEEecCCcEEEEEecccccc----------CCCCCCcCCCCCeEEEccEEE
Q psy9487          21 VKWLGEQAEA------MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA----------KDGSPKDTFARGMELHAKVTI   84 (101)
Q Consensus        21 d~~l~~~A~~------~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~----------~~g~~~~~~~~g~~i~A~~VI   84 (101)
                      .+.|.+.+++      .|++|++++.+.++.-  ++++.+|++.+...+          .+|+       ..++.++.||
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~-------~~~i~~d~vi  319 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNELVSDGSGRVAAKDTGE-------REELPAQLVV  319 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEEEECSSSSEEEEEEEE-------EEEEECSEEE
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEecCCCcccccccCCCc-------eEEEEcCEEE
Confidence            4566666766      7999999999999874  367777776531000          0111       1479999999


Q ss_pred             EeecCCch
Q psy9487          85 FAEGCHGH   92 (101)
Q Consensus        85 ~A~G~~s~   92 (101)
                      .|.|..+.
T Consensus       320 ~a~G~~p~  327 (456)
T 1lqt_A          320 RSVGYRGV  327 (456)
T ss_dssp             ECSCEECC
T ss_pred             EccccccC
Confidence            99998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=92.39  E-value=0.14  Score=37.03  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=39.7

Q ss_pred             HHHHH-HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A-~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.++. ++.|+++++++.+.++.-+  +++.+|.+.+.   .+|+       ..++.+|.||+|.|....
T Consensus       196 ~~~~~~~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~  253 (335)
T 2a87_A          196 MLDRARNNDKIRFLTNHTVVAVDGD--TTVTGLRVRDT---NTGA-------ETTLPVTGVFVAIGHEPR  253 (335)
T ss_dssp             HHHHHHHCTTEEEECSEEEEEEECS--SSCCEEEEEEE---TTSC-------CEEECCSCEEECSCEEEC
T ss_pred             HHHHHhccCCcEEEeCceeEEEecC--CcEeEEEEEEc---CCCc-------eEEeecCEEEEccCCccC
Confidence            34343 5689999999999998753  45666766531   1222       267999999999997643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=92.28  E-value=0.25  Score=37.82  Aligned_cols=51  Identities=12%  Similarity=0.061  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +.+.+.+..++.|+++++++.|+++.   ..   .|.+.+               |.++.+|.||+|.|...
T Consensus       190 ~~~~~~~~l~~~gV~i~~~~~v~~~~---~~---~v~~~~---------------g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          190 MNQPILDELDKREIPYRLNEEINAIN---GN---EITFKS---------------GKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             GGHHHHHHHHHTTCCEEESCCEEEEE---TT---EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             hHHHHHHHhhccceEEEeccEEEEec---CC---eeeecC---------------CeEEeeeeEEEEeceec
Confidence            44567888899999999999998873   22   245544               56899999999999764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.18  E-value=0.76  Score=35.86  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+.+..++.|++|++++.++++...+++  ..+.|....    .++..      ..++.+|.||+|.|....
T Consensus       251 ~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~----~~g~~------~~~~~~D~vi~a~G~~p~  316 (519)
T 3qfa_A          251 DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQS----TNSEE------IIEGEYNTVMLAIGRDAC  316 (519)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEE----SSSSC------EEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEE----CCCcE------EEEEECCEEEEecCCccc
Confidence            45667788889999999999988888643221  222344332    12211      146789999999997643

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.09  E-value=0.12  Score=40.06  Aligned_cols=65  Identities=22%  Similarity=0.218  Sum_probs=41.8

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc---ccCCCCCCcCCCCC--eEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g---~~~~g~~~~~~~~g--~~i~A~~VI~A~G~~s   91 (101)
                      .+.+++.|+++++++.++++.-  ++++.+|++.+..   .+.+|...+...+|  .++.+|.||+|.|...
T Consensus       309 ~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p  378 (456)
T 2vdc_G          309 VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEP  378 (456)
T ss_dssp             HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCC
Confidence            4678889999999999999874  4666666553210   01122211111112  5799999999999754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=91.95  E-value=0.064  Score=39.91  Aligned_cols=57  Identities=19%  Similarity=0.086  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHH----HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          18 GHVVKWLGEQA----EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        18 ~~~d~~l~~~A----~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..|+..+.+.+    ++.|+++++++.+..+..+.  ....|++.+               |.++.+|.+|++.|...
T Consensus       198 ~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~--~~~~v~~~~---------------g~~i~~D~vi~~~g~~~  258 (401)
T 3vrd_B          198 AQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDT--EAMTVETSF---------------GETFKAAVINLIPPQRA  258 (401)
T ss_dssp             HHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEET--TTTEEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             ccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecc--cceEEEcCC---------------CcEEEeeEEEEecCcCC
Confidence            34555544443    57899999999999987752  223466655               57899999999988654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=91.77  E-value=0.71  Score=32.55  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=41.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++...+...+.+.+++.++++...+ +.....+ +.. .-+.+.+               +.++.++.+|+|+|+..
T Consensus        63 i~~~~l~~~~~~~~~~~~~~~~~~~-v~~~~~~-~~~-~~~~~~~---------------~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           63 IDGNELMMNMRTQSEKYGTTIITET-IDHVDFS-TQP-FKLFTEE---------------GKEVLTKSVIIATGATA  121 (314)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECCC-EEEEECS-SSS-EEEEETT---------------CCEEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHhhcCcEEEEeE-EEEeecC-CCc-eEEEECC---------------CeEEEEeEEEEcccccc
Confidence            5667777888999999999998764 4444442 222 2234433               46899999999999764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=91.31  E-value=0.19  Score=39.94  Aligned_cols=46  Identities=28%  Similarity=0.372  Sum_probs=35.5

Q ss_pred             HHHHHHHCCCEEec--CCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          24 LGEQAEAMGVEIYP--GIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        24 l~~~A~~~Gv~i~~--gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +++...+.+|++++  .+++.+|.  ++    ||++.+               | ++.+|+||.|+|...
T Consensus       344 y~~al~~~nV~lv~~~~~~I~~it--~~----gv~~~d---------------G-~~~~D~IV~ATGf~~  391 (545)
T 3uox_A          344 YYETYNRDNVHLVDIREAPIQEVT--PE----GIKTAD---------------A-AYDLDVIIYATGFDA  391 (545)
T ss_dssp             HHHHTTSTTEEEEETTTSCEEEEE--TT----EEEESS---------------C-EEECSEEEECCCCBS
T ss_pred             HHHHhcCCCEEEEecCCCCceEEc--cC----eEEeCC---------------C-eeecCEEEECCcccc
Confidence            45555666899986  67888874  22    688876               7 899999999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=91.27  E-value=0.3  Score=37.70  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=36.2

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.|++++.+++|..+..+ ++. +.+.. +      ++       +.++.++.+|+|+|++..
T Consensus        99 ~~~~~~~gv~v~~~~~v~~i~~~-~~~-v~v~~-~------g~-------~~~~~~d~lviAtG~~p~  150 (490)
T 2bc0_A           99 KEELESLGAKVYMESPVQSIDYD-AKT-VTALV-D------GK-------NHVETYDKLIFATGSQPI  150 (490)
T ss_dssp             HHHHHHTTCEEETTCCEEEEETT-TTE-EEEEE-T------TE-------EEEEECSEEEECCCEEEC
T ss_pred             HHHHHhCCCEEEeCCEEEEEECC-CCE-EEEEe-C------Cc-------EEEEECCEEEECCCCCcC
Confidence            34566789999999999998653 333 32331 2      00       257999999999997654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=90.77  E-value=0.091  Score=40.02  Aligned_cols=54  Identities=13%  Similarity=0.049  Sum_probs=39.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCC-ceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGI-PASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt-~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      ++.+++..++.+|.+++++.|++++... .+.++           .  .                ....+++||+|+|.+
T Consensus       116 ~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l-----------~--~----------------~~~~ad~VV~AdG~~  166 (430)
T 3ihm_A          116 SRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDL-----------E--G----------------LSEQYDLLVVCTGKY  166 (430)
T ss_dssp             EBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGH-----------H--H----------------HHTTSSEEEECCCCT
T ss_pred             ceeecHHHHHHHHHHHHHHcCCEEEEEecchhhh-----------h--h----------------hcccCCEEEECCCCc
Confidence            5788999999999999999999998632 11111           0  0                112578999999998


Q ss_pred             chhh
Q psy9487          91 GHLT   94 (101)
Q Consensus        91 s~l~   94 (101)
                      |.+.
T Consensus       167 S~~~  170 (430)
T 3ihm_A          167 ALGK  170 (430)
T ss_dssp             TGGG
T ss_pred             chHH
Confidence            8763

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=90.57  E-value=0.36  Score=36.61  Aligned_cols=51  Identities=18%  Similarity=0.178  Sum_probs=37.1

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+.+++.|++++. ..|+.+..+  ++  .|.+.+               +.++.+|.+|+|+|+...
T Consensus        63 ~~l~~~~~~~gv~~~~-~~v~~id~~--~~--~V~~~~---------------g~~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           63 FPIRHYVERKGIHFIA-QSAEQIDAE--AQ--NITLAD---------------GNTVHYDYLMIATGPKLA  113 (437)
T ss_dssp             EECHHHHHTTTCEEEC-SCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCCEEC
T ss_pred             HHHHHHHHHCCCEEEE-eEEEEEEcC--CC--EEEECC---------------CCEEECCEEEECCCCCcC
Confidence            3356677789999986 588888653  33  345544               457999999999998654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.33  E-value=0.23  Score=37.10  Aligned_cols=46  Identities=17%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++.|++++.+++|+.+..+  .+.  |. .+               +.++.++.+|+|+|+..
T Consensus        68 ~~~~~~~v~~~~g~~v~~id~~--~~~--V~-~~---------------g~~~~~d~lViATGs~p  113 (367)
T 1xhc_A           68 DWYRKRGIEIRLAEEAKLIDRG--RKV--VI-TE---------------KGEVPYDTLVLATGARA  113 (367)
T ss_dssp             HHHHHHTEEEECSCCEEEEETT--TTE--EE-ES---------------SCEEECSEEEECCCEEE
T ss_pred             HHHHhCCcEEEECCEEEEEECC--CCE--EE-EC---------------CcEEECCEEEECCCCCC
Confidence            4456779999999999988542  332  33 22               35799999999999754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=89.99  E-value=1.5  Score=34.59  Aligned_cols=62  Identities=21%  Similarity=0.253  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEe-----cC---CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-----GD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-----~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+.+.+..++.|+++++++.++++...     ++   +++. +....    .+|+.       .++.+|.||+|.|..
T Consensus       327 ~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~----~~g~~-------~~~~~D~vi~a~G~~  394 (598)
T 2x8g_A          327 QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY----TDGKK-------FEEEFETVIFAVGRE  394 (598)
T ss_dssp             HHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE----TTSCE-------EEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe----CCCcE-------EeccCCEEEEEeCCc
Confidence            34556677788899999999988887531     12   3332 33211    11211       234599999999976


Q ss_pred             ch
Q psy9487          91 GH   92 (101)
Q Consensus        91 s~   92 (101)
                      ..
T Consensus       395 p~  396 (598)
T 2x8g_A          395 PQ  396 (598)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=89.98  E-value=0.12  Score=37.06  Aligned_cols=57  Identities=5%  Similarity=0.055  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      +.+.+.++.++.|+.+++++ +..+.-+ ++++.+|++.+               |.++.++.+|++.|...+.
T Consensus       182 ~~~~~~~~l~~~g~~~~~~~-v~~~~~~-~~~~~~v~~~~---------------g~~i~~~~~vi~~g~~~~~  238 (304)
T 4fk1_A          182 LSQTIMDELSNKNIPVITES-IRTLQGE-GGYLKKVEFHS---------------GLRIERAGGFIVPTFFRPN  238 (304)
T ss_dssp             CCHHHHHHHHTTTCCEECSC-EEEEESG-GGCCCEEEETT---------------SCEECCCEEEECCEEECSS
T ss_pred             chhhhhhhhhccceeEeeee-EEEeecC-CCeeeeeeccc---------------cceeeecceeeeeccccCC
Confidence            44556778888999999874 6666653 67888888876               5688888888888765543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=89.93  E-value=0.42  Score=36.46  Aligned_cols=61  Identities=8%  Similarity=-0.030  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHCC-CEEecCCceeEEEEecCCc----EEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          20 VVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGS----VKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        20 ~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~----v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +.+..-.-++.+| .+|+++++|++|..++++.    .+.|.+.+    .+|+.      ..++.||.||+|....
T Consensus       242 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~----~~g~~------~~~~~ad~VI~a~p~~  307 (504)
T 1sez_A          242 MQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISAS----PHKRQ------SEEESFDAVIMTAPLC  307 (504)
T ss_dssp             THHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBC----SSSSC------BCCCEESEEEECSCHH
T ss_pred             HHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcC----CCCcc------ceeEECCEEEECCCHH
Confidence            3443333345567 8999999999999863331    35566643    11210      0368999999997643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=89.84  E-value=0.76  Score=35.00  Aligned_cols=56  Identities=9%  Similarity=-0.003  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+.|++..   +.+|+++++|++|..+ ++.+ .|.+.+      |+.     ....+.||.||+|.+..
T Consensus       242 ~l~~~l~~~l---~~~i~~~~~V~~I~~~-~~~v-~v~~~~------~~~-----~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          242 KLPTAMYRDI---QDKVHFNAQVIKIQQN-DQKV-TVVYET------LSK-----ETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             HHHHHHHHHT---GGGEESSCEEEEEEEC-SSCE-EEEEEC------SSS-----CCCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhc---ccccccCCEEEEEEEC-CCeE-EEEEec------CCc-----ccceEEeCEEEECCChH
Confidence            4444555444   3389999999999985 4554 465543      110     01368999999998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=89.48  E-value=0.64  Score=37.48  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEe-ccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT-GDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~-~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .++.+..++.||++++++.++++.  +++    +.+ .+      |+       ..++.+|.||+|.|....
T Consensus       577 ~~~~~~l~~~GV~v~~~~~v~~i~--~~~----v~~~~~------G~-------~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          577 WIHRTTLLSRGVKMIPGVSYQKID--DDG----LHVVIN------GE-------TQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEE--TTE----EEEEET------TE-------EEEECCSEEEECCCEEEC
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEe--CCe----EEEecC------Ce-------EEEEeCCEEEECCCcccc
Confidence            345677788999999999999885  232    333 22      11       157999999999998764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=88.96  E-value=0.3  Score=36.81  Aligned_cols=47  Identities=23%  Similarity=0.220  Sum_probs=35.0

Q ss_pred             HHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          27 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        27 ~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+++.|++++.+++|+.+..+  ++  .|.+.+               +.++.++.+|+|+|+...
T Consensus        68 ~~~~~~v~~~~~~~v~~i~~~--~~--~v~~~~---------------g~~~~~d~lviAtG~~~~  114 (408)
T 2gqw_A           68 CKRAPEVEWLLGVTAQSFDPQ--AH--TVALSD---------------GRTLPYGTLVLATGAAPR  114 (408)
T ss_dssp             CTTSCSCEEEETCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEEC
T ss_pred             HHHHCCCEEEcCCEEEEEECC--CC--EEEECC---------------CCEEECCEEEECCCCCCC
Confidence            346789999999999998653  33  244543               457999999999998653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=88.95  E-value=0.51  Score=35.53  Aligned_cols=47  Identities=17%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             HHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          26 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        26 ~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++.|++++.+++|+.+..+  .+  .|.+.+               |.++.++.+|+|+|+..
T Consensus        65 ~~~~~~~i~~~~~~~v~~id~~--~~--~v~~~~---------------g~~~~~d~lvlAtG~~p  111 (410)
T 3ef6_A           65 DWYGEARIDMLTGPEVTALDVQ--TR--TISLDD---------------GTTLSADAIVIATGSRA  111 (410)
T ss_dssp             THHHHTTCEEEESCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             HHHHHCCCEEEeCCEEEEEECC--CC--EEEECC---------------CCEEECCEEEEccCCcc
Confidence            3456789999999999998653  33  244543               46899999999999763

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=88.83  E-value=0.84  Score=34.91  Aligned_cols=50  Identities=22%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             CCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          32 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        32 Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .++|++++.++++..++++.+. |.+.+    .+|+.       .++.+|.||+|.|.....
T Consensus       225 ~v~i~~~~~v~~i~~~~~~~v~-v~~~~----~~G~~-------~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          225 KLNIKFNSPVTEVKKIKDDEYE-VIYST----KDGSK-------KSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             CCCEECSCCEEEEEEEETTEEE-EEECC----TTSCC-------EEEEESCEEECCCEEECC
T ss_pred             EEEEEECCEEEEEEEcCCCcEE-EEEEe----cCCce-------EEEEcCEEEECcCCCccc
Confidence            3999999999999875214443 66542    12321       479999999999987544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=88.81  E-value=0.85  Score=34.76  Aligned_cols=52  Identities=23%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+.+++.|++++.++.+.   .+ ... +.|.+.+      |+       ..++.++.+|+|+|+...
T Consensus        98 ~~~~~~~~~~v~~~~g~~~~---i~-~~~-~~v~~~~------G~-------~~~~~~d~lviAtG~~p~  149 (468)
T 2qae_A           98 GVEYLFKKNKVTYYKGEGSF---ET-AHS-IRVNGLD------GK-------QEMLETKKTIIATGSEPT  149 (468)
T ss_dssp             HHHHHHHHHTCEEEEEEEEE---EE-TTE-EEEEETT------SC-------EEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHhCCCEEEEEEEEE---ee-CCE-EEEEecC------Cc-------eEEEEcCEEEECCCCCcC
Confidence            34566777899999987542   33 333 3355433      11       157999999999997543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=88.72  E-value=0.6  Score=35.52  Aligned_cols=53  Identities=8%  Similarity=0.013  Sum_probs=38.5

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+..++.|++++.+++|+++..+  .+.+.+.... +             +.++.++.+|+|+|+...
T Consensus        64 ~~~~~~~~gi~~~~~~~V~~id~~--~~~v~v~~~~-~-------------~~~~~~d~lviAtG~~p~  116 (452)
T 3oc4_A           64 TEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKE-E-------------QQWYSYDKLILATGASQF  116 (452)
T ss_dssp             CHHHHHHTTEEEECSCEEEEEETT--TTEEEEEETT-E-------------EEEEECSEEEECCCCCBC
T ss_pred             CHHHHHHCCCEEEECCEEEEEECC--CCEEEEEecC-c-------------eEEEEcCEEEECCCcccC
Confidence            456677899999999999999764  3333344211 0             368999999999998653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=88.32  E-value=0.23  Score=39.32  Aligned_cols=42  Identities=31%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             HCCCEEec--CCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          30 AMGVEIYP--GIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        30 ~~Gv~i~~--gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+|+++.  ..++.++.  ++    ||++.+               |.++.+|+||.|+|....
T Consensus       342 ~~nV~lv~~~~~~I~~it--~~----gv~~~d---------------G~~~~~DvIV~ATGf~~~  385 (540)
T 3gwf_A          342 RPNVEAVAIKENPIREVT--AK----GVVTED---------------GVLHELDVLVFATGFDAV  385 (540)
T ss_dssp             STTEEEEETTTSCEEEEC--SS----EEEETT---------------CCEEECSEEEECCCBSCS
T ss_pred             CCCEEEEeCCCCCccEEe--cC----eEEcCC---------------CCEEECCEEEECCccCcc
Confidence            45899885  66888774  22    688876               678999999999998765

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=88.23  E-value=0.65  Score=35.21  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+..++.|++++.++.|..+..+ + +.+.+....     +|+       ..++.++.+|+|+|++..
T Consensus        63 ~~~~~~~gv~~~~~~~v~~i~~~-~-~~v~~~~~~-----~g~-------~~~~~~d~lviAtG~~p~  116 (447)
T 1nhp_A           63 GEKMESRGVNVFSNTEITAIQPK-E-HQVTVKDLV-----SGE-------ERVENYDKLIISPGAVPF  116 (447)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETT-T-TEEEEEETT-----TCC-------EEEEECSEEEECCCEEEC
T ss_pred             HHHHHHCCCEEEECCEEEEEeCC-C-CEEEEEecC-----CCc-------eEEEeCCEEEEcCCCCcC
Confidence            44556789999999999988653 3 333333211     111       135999999999997653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=88.07  E-value=0.57  Score=35.58  Aligned_cols=54  Identities=9%  Similarity=0.008  Sum_probs=36.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.|++++.+++|..+..+ ++. +.+....     +++       +.++.++.+|+|+|++..
T Consensus        65 ~~~~~~~gv~~~~~~~v~~i~~~-~~~-v~v~~~~-----~g~-------~~~~~~d~lviAtGs~p~  118 (452)
T 2cdu_A           65 PEELSNLGANVQMRHQVTNVDPE-TKT-IKVKDLI-----TNE-------EKTEAYDKLIMTTGSKPT  118 (452)
T ss_dssp             HHHHHHTTCEEEESEEEEEEEGG-GTE-EEEEETT-----TCC-------EEEEECSEEEECCCEEEC
T ss_pred             HHHHHHcCCEEEeCCEEEEEEcC-CCE-EEEEecC-----CCc-------eEEEECCEEEEccCCCcC
Confidence            45567789999999999998654 333 2233211     111       357999999999997654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.88  E-value=0.59  Score=35.68  Aligned_cols=51  Identities=6%  Similarity=0.022  Sum_probs=35.5

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .++.|++++.+++|+.|..+  .+...+....     +++       +.++.+|.+|+|+|+...
T Consensus        67 ~~~~~i~~~~~~~V~~id~~--~~~~~~~~~~-----~~~-------~~~~~yd~lVIATGs~p~  117 (437)
T 4eqs_A           67 YDRKQITVKTYHEVIAINDE--RQTVSVLNRK-----TNE-------QFEESYDKLILSPGASAN  117 (437)
T ss_dssp             HHHHCCEEEETEEEEEEETT--TTEEEEEETT-----TTE-------EEEEECSEEEECCCEEEC
T ss_pred             HHhcCCEEEeCCeEEEEEcc--CcEEEEEecc-----CCc-------eEEEEcCEEEECCCCccc
Confidence            45679999999999998653  4444444322     111       367999999999998643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=87.81  E-value=0.83  Score=33.84  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.+++.|++++.+++|+.+..+ +..   |.+.+                .++.++.+|+|+|+...
T Consensus        67 ~~~~~~~~v~~~~~~~v~~i~~~-~~~---v~~~~----------------~~~~~d~lviAtG~~p~  114 (384)
T 2v3a_A           67 GAMAEQLNARILTHTRVTGIDPG-HQR---IWIGE----------------EEVRYRDLVLAWGAEPI  114 (384)
T ss_dssp             HHHHHHTTCEEECSCCCCEEEGG-GTE---EEETT----------------EEEECSEEEECCCEEEC
T ss_pred             HHHHHhCCcEEEeCCEEEEEECC-CCE---EEECC----------------cEEECCEEEEeCCCCcC
Confidence            44457889999999999988653 222   34432                47999999999998654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=87.74  E-value=1.3  Score=34.22  Aligned_cols=59  Identities=22%  Similarity=0.195  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEec--CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~--~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +..++.+.+++.|++++.++ +..+..++  ++..+.|.+.+      |+       ..++.++.+|+|+|+...
T Consensus        97 ~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~------g~-------~~~~~~d~lviATGs~p~  157 (499)
T 1xdi_A           97 QSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAAD------GS-------TSEHEADVVLVATGASPR  157 (499)
T ss_dssp             HHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTT------SC-------EEEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCC------Cc-------EEEEEeCEEEEcCCCCCC
Confidence            34456777888999999986 54432100  01333344432      11       027999999999997654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=87.63  E-value=1  Score=34.66  Aligned_cols=54  Identities=9%  Similarity=0.005  Sum_probs=34.8

Q ss_pred             HHHH-HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A-~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+.. +..|++++.+++|..+..+ ++. +-+...+     +|+       ..++.++.+|+|+|+...
T Consensus        99 ~~~~~~~~gv~~~~~~~v~~i~~~-~~~-v~v~~~~-----~g~-------~~~~~~d~lviAtG~~p~  153 (480)
T 3cgb_A           99 VKTFRDKYGIDAKVRHEVTKVDTE-KKI-VYAEHTK-----TKD-------VFEFSYDRLLIATGVRPV  153 (480)
T ss_dssp             HHHHHHTTCCEEESSEEEEEEETT-TTE-EEEEETT-----TCC-------EEEEECSEEEECCCEEEC
T ss_pred             HHHHHhhcCCEEEeCCEEEEEECC-CCE-EEEEEcC-----CCc-------eEEEEcCEEEECCCCccc
Confidence            3344 3459999999999998753 333 3243311     111       037999999999997653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=87.42  E-value=1.3  Score=33.76  Aligned_cols=53  Identities=13%  Similarity=0.044  Sum_probs=34.0

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+.+++.|++++.++.+ .  .+ .+. +.|.+.+      |.       ..++.++.+|+|+|+....
T Consensus       102 ~~~~~~~~~gv~~~~g~~~-~--~~-~~~-~~v~~~~------gg-------~~~~~~d~lViAtGs~p~~  154 (474)
T 1zmd_A          102 GIAHLFKQNKVVHVNGYGK-I--TG-KNQ-VTATKAD------GG-------TQVIDTKNILIATGSEVTP  154 (474)
T ss_dssp             HHHHHHHHTTCEEEESEEE-E--EE-TTE-EEEECTT------SC-------EEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHhCCCEEEEEEEE-E--ec-CCE-EEEEecC------CC-------cEEEEeCEEEECCCCCCCC
Confidence            3456677899999998643 2  23 333 3354432      00       1479999999999986543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=87.20  E-value=0.84  Score=35.89  Aligned_cols=57  Identities=11%  Similarity=0.077  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          21 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        21 d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.+...+++.|++++.+++|+++..+ ++. +-+....     +|+       ...+.++.+|+|+|+..
T Consensus        96 ~~~~~~~~~~~gi~v~~~~~V~~id~~-~~~-v~v~~~~-----~g~-------~~~~~~d~lviAtG~~p  152 (588)
T 3ics_A           96 VQTVERMSKRFNLDIRVLSEVVKINKE-EKT-ITIKNVT-----TNE-------TYNEAYDVLILSPGAKP  152 (588)
T ss_dssp             SSCHHHHHHHTTCEEECSEEEEEEETT-TTE-EEEEETT-----TCC-------EEEEECSEEEECCCEEE
T ss_pred             ccCHHHHHHhcCcEEEECCEEEEEECC-CCE-EEEeecC-----CCC-------EEEEeCCEEEECCCCCC
Confidence            334555667889999999999999764 333 3344311     111       13789999999999754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=87.15  E-value=0.74  Score=35.70  Aligned_cols=61  Identities=20%  Similarity=0.107  Sum_probs=39.4

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ....+..++.++. +.|++++.++.|.++..+ +..+.-....+      ++       -..+.++.+|+|+|+..
T Consensus       159 ~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~------~~-------~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          159 DSRKVVEELVGKL-NENTKIYLETSALGVFDK-GEYFLVPVVRG------DK-------LIEILAKRVVLATGAID  219 (493)
T ss_dssp             EHHHHHHHHHHTC-CTTEEEETTEEECCCEEC-SSSEEEEEEET------TE-------EEEEEESCEEECCCEEE
T ss_pred             CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcC-CcEEEEEEecC------Ce-------EEEEECCEEEECCCCCc
Confidence            3444445555555 679999999999998774 44443222221      10       13699999999999764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=86.93  E-value=0.55  Score=34.98  Aligned_cols=53  Identities=23%  Similarity=0.254  Sum_probs=36.1

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+.+++.|++++.+ .|+.+..+  ++.  |.+.+    .+++       ..++.+|.+|+|+|+...
T Consensus        62 ~~~~~~~~gv~~~~~-~v~~i~~~--~~~--V~~~~----g~~~-------~~~~~~d~lViAtG~~~~  114 (409)
T 3h8l_A           62 LSEALPEKGIQFQEG-TVEKIDAK--SSM--VYYTK----PDGS-------MAEEEYDYVIVGIGAHLA  114 (409)
T ss_dssp             HHHHTGGGTCEEEEC-EEEEEETT--TTE--EEEEC----TTSC-------EEEEECSEEEECCCCEEC
T ss_pred             HHHHHhhCCeEEEEe-eEEEEeCC--CCE--EEEcc----CCcc-------cceeeCCEEEECCCCCcC
Confidence            466667889999988 88888653  332  44433    1111       146999999999998654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=86.72  E-value=0.84  Score=34.66  Aligned_cols=48  Identities=17%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+.+++.|++++.++.+.   .+ . ..+.|.+ +               |.++.++.+|+|+|+...
T Consensus        95 ~~~~~~~~~v~~~~g~~~~---i~-~-~~~~v~~-~---------------g~~~~~d~lviAtG~~p~  142 (455)
T 2yqu_A           95 VEFLFKKNGIARHQGTARF---LS-E-RKVLVEE-T---------------GEELEARYILIATGSAPL  142 (455)
T ss_dssp             HHHHHHHHTCEEEESCEEE---SS-S-SEEEETT-T---------------CCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHhCCCEEEEeEEEE---ec-C-CeEEEee-C---------------CEEEEecEEEECCCCCCC
Confidence            4556777899999987542   22 2 2222332 2               357999999999998543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=86.58  E-value=0.96  Score=34.76  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +..++.+..++.|++++.++ +..+  + ... +.|.+.+      |+       ..++.++.+|+|+|+...
T Consensus       107 ~~~~~~~~~~~~gv~~~~g~-~~~i--~-~~~-~~v~~~~------g~-------~~~~~~d~lviAtGs~p~  161 (479)
T 2hqm_A          107 LNGIYQKNLEKEKVDVVFGW-ARFN--K-DGN-VEVQKRD------NT-------TEVYSANHILVATGGKAI  161 (479)
T ss_dssp             HHHHHHHHHHHTTEEEEEEE-EEEC--T-TSC-EEEEESS------SC-------CEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHhCCCEEEEeE-EEEe--e-CCE-EEEEeCC------Cc-------EEEEEeCEEEEcCCCCCC
Confidence            33455666778999999885 4433  2 333 3344432      11       137999999999998643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=86.47  E-value=0.42  Score=37.10  Aligned_cols=45  Identities=20%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          29 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        29 ~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ++.|++++.+++|+.+..+ + +  .|.+.+               |.++.++.+|+|+|+...
T Consensus       101 ~~~gv~~~~g~~v~~id~~-~-~--~V~~~~---------------g~~i~yd~lviATGs~p~  145 (493)
T 1m6i_A          101 ENGGVAVLTGKKVVQLDVR-D-N--MVKLND---------------GSQITYEKCLIATGGTPR  145 (493)
T ss_dssp             TTCEEEEEETCCEEEEEGG-G-T--EEEETT---------------SCEEEEEEEEECCCEEEC
T ss_pred             hcCCeEEEcCCEEEEEECC-C-C--EEEECC---------------CCEEECCEEEECCCCCCC
Confidence            3579999999999998763 3 2  245544               467999999999998654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=86.43  E-value=1.5  Score=33.25  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             HHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCC-eEEEccEEEEeecCCc
Q psy9487          29 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHG   91 (101)
Q Consensus        29 ~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g-~~i~A~~VI~A~G~~s   91 (101)
                      ++.|++++.+++|+.+..+  .  ..|.+.+               + .++.++.+|+|+|+..
T Consensus        70 ~~~gi~v~~~~~v~~i~~~--~--~~v~~~~---------------g~~~~~~d~lviAtG~~p  114 (449)
T 3kd9_A           70 KKRGIDLHLNAEVIEVDTG--Y--VRVRENG---------------GEKSYEWDYLVFANGASP  114 (449)
T ss_dssp             HHTTCEEETTCEEEEECSS--E--EEEECSS---------------SEEEEECSEEEECCCEEE
T ss_pred             HhcCcEEEecCEEEEEecC--C--CEEEECC---------------ceEEEEcCEEEECCCCCC
Confidence            6789999999999988432  2  2344432               2 4799999999999754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=86.20  E-value=0.94  Score=33.91  Aligned_cols=48  Identities=21%  Similarity=0.205  Sum_probs=36.0

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+..++.|++++.+++|+.+..+  ++  .|.+.+               +..+.++.+|+|+|+..
T Consensus        72 ~~~~~~~~i~~~~~~~v~~id~~--~~--~v~~~~---------------g~~~~~d~lvlAtG~~~  119 (415)
T 3lxd_A           72 AQFWEDKAVEMKLGAEVVSLDPA--AH--TVKLGD---------------GSAIEYGKLIWATGGDP  119 (415)
T ss_dssp             HHHHHHTTEEEEETCCEEEEETT--TT--EEEETT---------------SCEEEEEEEEECCCEEC
T ss_pred             HHHHHHCCcEEEeCCEEEEEECC--CC--EEEECC---------------CCEEEeeEEEEccCCcc
Confidence            45566789999999999998653  33  244443               46899999999999653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=85.96  E-value=0.99  Score=34.50  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=33.6

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeE--EEccEEEEeecCCc
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME--LHAKVTIFAEGCHG   91 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~--i~A~~VI~A~G~~s   91 (101)
                      .++.+.+++.|++++.+ .+..+  + .. ...|.+.+               |.+  +.++.+|+|+|+..
T Consensus        93 ~~~~~~~~~~~v~~~~g-~v~~i--d-~~-~~~V~~~~---------------g~~~~~~~d~lviAtG~~p  144 (466)
T 3l8k_A           93 QHKRNMSQYETLTFYKG-YVKIK--D-PT-HVIVKTDE---------------GKEIEAETRYMIIASGAET  144 (466)
T ss_dssp             HHHHHHTTCTTEEEESE-EEEEE--E-TT-EEEEEETT---------------SCEEEEEEEEEEECCCEEE
T ss_pred             chHHHHHHhCCCEEEEe-EEEEe--c-CC-eEEEEcCC---------------CcEEEEecCEEEECCCCCc
Confidence            55566677789999988 45544  2 22 23355433               345  99999999999754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=84.90  E-value=1.2  Score=34.55  Aligned_cols=53  Identities=11%  Similarity=0.052  Sum_probs=35.9

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+++.|++++.+++|+++..+  ++.+-+....     +|+       ..++.++.+|+|+|+..
T Consensus        65 ~~~~~~~~i~~~~~~~V~~id~~--~~~v~~~~~~-----~g~-------~~~~~~d~lviAtG~~p  117 (565)
T 3ntd_A           65 ESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLL-----DGS-------EYQESYDTLLLSPGAAP  117 (565)
T ss_dssp             HHHHHHHCCEEETTEEEEEEETT--TTEEEEEETT-----TCC-------EEEEECSEEEECCCEEE
T ss_pred             HHHHHhcCcEEEECCEEEEEECC--CCEEEEEecC-----CCC-------eEEEECCEEEECCCCCC
Confidence            44455679999999999999763  3333344321     121       24799999999999853

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=84.74  E-value=2  Score=32.84  Aligned_cols=46  Identities=26%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .+.+++.|++++.++.+.   .+ ...   |.+.                |.++.++.+|+|+|++...
T Consensus       100 ~~~~~~~gv~~~~g~~~~---~~-~~~---v~v~----------------g~~~~~d~lViATGs~p~~  145 (464)
T 2eq6_A          100 GTLLKGNGVELLRGFARL---VG-PKE---VEVG----------------GERYGAKSLILATGSEPLE  145 (464)
T ss_dssp             HHHHHHTTCEEEESCEEE---EE-TTE---EEET----------------TEEEEEEEEEECCCEEECC
T ss_pred             HHHHHhCCCEEEeeeEEE---cc-CCE---EEEc----------------cEEEEeCEEEEcCCCCCCC
Confidence            455677899999997543   33 332   3332                1579999999999986543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=84.72  E-value=0.98  Score=34.20  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             HHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          28 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        28 A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +++.|++++.+ +|++|..+ +.+   |.+.+               |.++..|.+|+|+|+..
T Consensus        66 ~~~~gv~~i~~-~v~~Id~~-~~~---V~~~~---------------g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           66 LPKFNIEFINE-KAESIDPD-ANT---VTTQS---------------GKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             GGGGTEEEECS-CEEEEETT-TTE---EEETT---------------CCEEECSEEEECCCCEE
T ss_pred             HHHCCcEEEEe-EEEEEECC-CCE---EEECC---------------CCEEECCEEEEeCCCCc
Confidence            45679999887 68888653 332   45554               56899999999999853

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=84.22  E-value=0.98  Score=34.45  Aligned_cols=55  Identities=15%  Similarity=-0.027  Sum_probs=31.0

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ++...++..|++++.+++|+++..+  ++.+-+....     +|+       ...+.++.+|+|+|+..
T Consensus        71 ~~~~~~~~~gi~~~~~~~V~~id~~--~~~v~~~~~~-----~g~-------~~~~~~d~lviAtG~~p  125 (472)
T 3iwa_A           71 DPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLR-----TGE-------RRTLKYDKLVLALGSKA  125 (472)
T ss_dssp             ----------CEEECSEEEEEEETT--TTEEEEEETT-----TCC-------EEEEECSEEEECCCEEE
T ss_pred             CHHHHhhhcCcEEEECCEEEEEECC--CCEEEEeecC-----CCC-------EEEEECCEEEEeCCCCc
Confidence            3333444689999999999999763  3333344311     121       14799999999999754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=83.89  E-value=0.61  Score=36.98  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             HCCCEEe--cCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          30 AMGVEIY--PGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        30 ~~Gv~i~--~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +-+|+++  ...++.+|.  ++    ||++.+               | ++.+|+||.|+|....
T Consensus       355 ~~~V~lvd~~~~~I~~it--~~----gv~~~d---------------G-~~~~D~iI~ATGf~~~  397 (549)
T 4ap3_A          355 RDNVELVDLRSTPIVGMD--ET----GIVTTG---------------A-HYDLDMIVLATGFDAM  397 (549)
T ss_dssp             STTEEEEETTTSCEEEEE--TT----EEEESS---------------C-EEECSEEEECCCEEES
T ss_pred             CCCEEEEeCCCCCceEEe--CC----cEEeCC---------------C-ceecCEEEECCccccc
Confidence            4478887  236777764  22    678776               7 8999999999998654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=83.73  E-value=2.9  Score=33.69  Aligned_cols=47  Identities=11%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+++|+++++|++|.++ ++.+ .|.+.+.   .++.      .+..+.||.||+|..
T Consensus       409 ~~l~I~l~~~V~~I~~~-~~~v-~V~~~~~---~~~~------~~~~~~Ad~VI~tvP  455 (662)
T 2z3y_A          409 EGLDIKLNTAVRQVRYT-ASGC-EVIAVNT---RSTS------QTFIYKCDAVLCTLP  455 (662)
T ss_dssp             TTCEEETTEEEEEEEEE-TTEE-EEEEEES---SCTT------CEEEEEESEEEECCC
T ss_pred             hcCceecCCeEEEEEEC-CCcE-EEEEeec---ccCC------CCeEEEeCEEEECCC
Confidence            47899999999999996 4433 3555431   1111      136799999999965

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=82.43  E-value=5.4  Score=30.01  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +...+.+..++.||++++++.++++.   .+.+. +...+    .+|+.    ..+.++.+|.||+|.|..
T Consensus       210 ~~~~~~~~l~~~gI~~~~~~~v~~v~---~~~v~-~~~~~----~~g~~----~~~~~i~~D~vv~~~g~~  268 (437)
T 3sx6_A          210 SKGILTKGLKEEGIEAYTNCKVTKVE---DNKMY-VTQVD----EKGET----IKEMVLPVKFGMMIPAFK  268 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEE---TTEEE-EEEEC----TTSCE----EEEEEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEE---CCeEE-EEecc----cCCcc----ccceEEEEeEEEEcCCCc
Confidence            45667788889999999999999984   23222 22111    12210    013689999999998743

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=82.24  E-value=0.77  Score=37.56  Aligned_cols=67  Identities=12%  Similarity=-0.049  Sum_probs=38.8

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCC--C--CCCcCCCCC--eEEEccEEEEeecCCch
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD--G--SPKDTFARG--MELHAKVTIFAEGCHGH   92 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~--g--~~~~~~~~g--~~i~A~~VI~A~G~~s~   92 (101)
                      ..+.+..++.||++++++.++++.-  + .+. +.....+....  +  ...+.+.++  .++.+|.||+|.|....
T Consensus       575 ~~~~~~l~~~GV~i~~~~~v~~i~~--~-~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          575 PNMMRRLHELHVEELGDHFCSRIEP--G-RME-IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEET--T-EEE-EEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHHHHHHhCCCEEEcCcEEEEEEC--C-eEE-EEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            4566777899999999999999852  2 222 22211010000  0  001122222  34999999999997654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=80.77  E-value=6.1  Score=30.01  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +.+.+++.|++++.++.+.   .+ +.   .|.+.+                .++.++.+|+|+|+...
T Consensus       102 ~~~~~~~~gv~~~~g~~~~---~~-~~---~v~v~~----------------~~~~~d~lviATGs~p~  147 (458)
T 1lvl_A          102 VAALLKKHGVKVVHGWAKV---LD-GK---QVEVDG----------------QRIQCEHLLLATGSSSV  147 (458)
T ss_dssp             HHHHHHHTTCEEECSCEEE---EE-TT---EEEETT----------------EEEECSEEEECCCEEEC
T ss_pred             HHHHHHhCCcEEEEEEEEE---cc-CC---EEEEee----------------EEEEeCEEEEeCCCCCC
Confidence            3456678999999998654   23 32   244432                47999999999998653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=80.62  E-value=2.5  Score=31.43  Aligned_cols=47  Identities=11%  Similarity=0.157  Sum_probs=34.8

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+..++.|++++. ++|+.+..+  ++  .|.+.+               +.++.++.+|+|+|+..
T Consensus        64 ~~~~~~~~i~~~~-~~v~~id~~--~~--~v~~~~---------------g~~~~~d~lvlAtG~~p  110 (404)
T 3fg2_P           64 EKFFQDQAIELIS-DRMVSIDRE--GR--KLLLAS---------------GTAIEYGHLVLATGARN  110 (404)
T ss_dssp             HHHHHHTTEEEEC-CCEEEEETT--TT--EEEESS---------------SCEEECSEEEECCCEEE
T ss_pred             HHHHHhCCCEEEE-EEEEEEECC--CC--EEEECC---------------CCEEECCEEEEeeCCCc
Confidence            4455678999999 999998653  33  245543               46899999999999743

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=80.52  E-value=1.5  Score=33.99  Aligned_cols=54  Identities=11%  Similarity=0.053  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEecC--CceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPG--IPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~g--t~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+-+.|++...+.  +|+++  ++|++|..+ +++   |.+.+               |.++.|+.||.|..++.
T Consensus       215 ~~~l~~~la~~l~~~--~i~~~~~~~V~~I~~~-~~~---v~~~~---------------G~~~~ad~VI~a~p~~~  270 (484)
T 4dsg_A          215 TGIIYQAIKEKLPSE--KLTFNSGFQAIAIDAD-AKT---ITFSN---------------GEVVSYDYLISTVPFDN  270 (484)
T ss_dssp             THHHHHHHHHHSCGG--GEEECGGGCEEEEETT-TTE---EEETT---------------SCEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHhhhhhC--eEEECCCceeEEEEec-CCE---EEECC---------------CCEEECCEEEECCCHHH
Confidence            445555555544332  88999  469999874 453   44443               46799999999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-15
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-04

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 68.0 bits (165), Expect = 2e-15
 Identities = 74/97 (76%), Positives = 85/97 (87%)

Query: 1   MAFGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV 60
           +  G+PMNNHGNYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DV
Sbjct: 124 ILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDV 183

Query: 61  GIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL 97
           GI KDG+PK TF RG+ELHAKVTIFAEGCHGHL K L
Sbjct: 184 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL 220

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 8   NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS 67
           + +             + +      V+++  + A +++  G+  V G+ T    +     
Sbjct: 104 DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR-VGGVVTN-WALVAQNH 161

Query: 68  PKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 100
              +      + AK+ + + G  G    +   R
Sbjct: 162 HTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKR 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.05
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.98
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.9
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.85
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.79
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.75
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.73
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.32
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.3
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.23
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.15
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.1
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.05
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.04
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.01
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.91
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.79
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.77
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.71
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.39
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.39
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.27
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.24
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.21
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.19
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.18
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.16
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.14
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.05
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.01
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.0
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.84
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.82
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.82
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	96.81
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.58
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.5
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.48
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.47
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.42
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.22
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.79
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	95.76
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	95.64
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.07
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	94.94
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.2
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.78
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.85
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.57
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	90.44
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.35
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	89.4
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.46
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	86.77
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.0
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.37
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	81.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.94

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=8.5e-10  Score=82.91  Aligned_cols=97  Identities=76%  Similarity=1.328  Sum_probs=90.2

Q ss_pred             CCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEE
Q psy9487           5 MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI   84 (101)
Q Consensus         5 ~~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI   84 (101)
                      ..+.+++.+++.+..+++|+.++|+++|++++.++.+.++++++++.+.++.+.+...++++.+.+.+.++..+.++.+|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (380)
T d2gmha1         128 LPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTI  207 (380)
T ss_dssp             STTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEE
T ss_pred             hhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEE
Confidence            45667789999999999999999999999999999999999987889999999998988999999999999999999999


Q ss_pred             EeecCCchhhHHHhhhC
Q psy9487          85 FAEGCHGHLTKSLSSRF  101 (101)
Q Consensus        85 ~A~G~~s~l~~~l~~~~  101 (101)
                      +++|+.+.+.++|++.|
T Consensus       208 ~~~G~~G~l~k~li~~~  224 (380)
T d2gmha1         208 FAEGCHGHLAKQLYKKF  224 (380)
T ss_dssp             ECCCTTCHHHHHHHHHT
T ss_pred             EeeeCCCcchHHHHhhh
Confidence            99999999999998765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.98  E-value=1.3e-09  Score=77.37  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...++-..+.++|.+.|++.|++|+++++|+++..+ ++++++|+|..                .+|+|+.||+|+|+|+
T Consensus       142 ~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~----------------g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         142 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTAD----------------GVIPADIVVSCAGFWG  204 (305)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT----------------EEEECSEEEECCGGGH
T ss_pred             ccccchhhhhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccc----------------eeEECCEEEEecchhH
Confidence            345678889999999999999999999999999996 88999999865                5799999999999998


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      .-
T Consensus       205 ~~  206 (305)
T d1pj5a2         205 AK  206 (305)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.90  E-value=2.6e-09  Score=76.18  Aligned_cols=69  Identities=25%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHH
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS   96 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~   96 (101)
                      ...+.+.|.+++++.|++|+++++|++++.+++|+|+||.+.+    .++..       ..|+|+.||+|+|.++.+.+.
T Consensus       144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~----~~~~~-------~~i~Ak~VVlAtGG~~~n~~~  212 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKG----MYKGY-------YWVKADAVILATGGFAKNNER  212 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEE----TTTEE-------EEEECSEEEECCCCCTTCHHH
T ss_pred             HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccc----cccce-------eEeecCeEEEccCcccccHHH
Confidence            3457788899999999999999999999997678999999875    22221       579999999999999988543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.85  E-value=6.1e-09  Score=71.80  Aligned_cols=61  Identities=23%  Similarity=0.327  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ...+.++|.++++++||+|+++++|++|..+ ++++.+|.+.+               +..++|+.||+|+|..|..
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQT---------------GEVLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------CCEEECSCEEECCCCSSSG
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCC---------------CCeEecCeEEEccCCcccc
Confidence            3567888999999999999999999999996 78999998876               5689999999999998754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.79  E-value=4.6e-09  Score=75.71  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHH
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS   96 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~   96 (101)
                      ...+.+.|.++|++.|++|+++++|++++.+++|+|+||.+.+.    ++..       ..|+|+.||+|+|..+.+...
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~----~~~~-------~~i~Ak~VIlAtGG~~~n~~~  219 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGE----YTGY-------YVIKADAVVIAAGGFAKNNER  219 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEET----TTEE-------EEEECSEEEECCCCCTTCHHH
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEee----cccE-------EEEeCCeEEEcCCCcccCHHH
Confidence            45678899999999999999999999999976789999998752    2211       469999999999999887543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.75  E-value=6.4e-09  Score=72.48  Aligned_cols=62  Identities=26%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          14 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        14 ~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      .++-..+.+.|.+.|++.|++|+++++|++|..  ++++++|++.+                .+|+|+.||+|+|+||.-
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~----------------g~i~a~~vV~AaG~~s~~  208 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPS----------------GDVWANHVVVASGVWSGM  208 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETT----------------EEEEEEEEEECCGGGTHH
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCC----------------eEEEcCEEEECCCccHHH
Confidence            457778999999999999999999999999886  46678899875                579999999999999863

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.73  E-value=1.6e-08  Score=73.04  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhH
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK   95 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~   95 (101)
                      .+.+.|.+++++.|+++++++++++++.+++++|+||.+.+    .+++.       ..|.|+.||+|+|.++...+
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~----~~~~~-------~~i~Ak~VVlAtGG~~~n~~  214 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHG----KHTGY-------YMIGAKSVVLATGGYGMNKE  214 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEE----TTTEE-------EEEEEEEEEECCCCCTTCHH
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeec----ccceE-------EEEeccceEEeccccccCHH
Confidence            47778899999999999999999999887688999999875    23322       57999999999999988754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.69  E-value=5e-08  Score=68.22  Aligned_cols=63  Identities=21%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++-..+.+.|.+.|++.|++|+++++|++|..+ ++++ .|++.+                .+|.|+.||+|+|+|+
T Consensus       144 ~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~----------------g~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         144 SGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETAN----------------GSYTADKLIVSMGAWN  205 (281)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETT----------------EEEEEEEEEECCGGGH
T ss_pred             cccccccccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECC----------------cEEEcCEEEECCCCcc
Confidence            345667788999999999999999999999999986 5665 588865                5799999999999987


Q ss_pred             h
Q psy9487          92 H   92 (101)
Q Consensus        92 ~   92 (101)
                      .
T Consensus       206 ~  206 (281)
T d2gf3a1         206 S  206 (281)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.32  E-value=7.3e-07  Score=62.00  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ...+.++|.++++++||+|+++++|+++...+++ .+..+...+               +.+++|+.||+|+|..|
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~---------------~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN---------------STQWQCKNLIVATGGLS  168 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET---------------TEEEEESEEEECCCCSS
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecC---------------CEEEEeCEEEEcCCccc
Confidence            4568889999999999999999999999876554 333333322               47899999999999776

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.30  E-value=1.5e-06  Score=61.93  Aligned_cols=65  Identities=23%  Similarity=0.291  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+-..|.+++++.|++|++.+++.+++.+ +++|+|+.+.+   .++|+.       ..|.|+.||+|+|..+.+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~---~~~g~~-------~~i~Ak~VvlATGG~~~~  222 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRD---LVTGDI-------IAYVAKGTLIATGGYGRI  222 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEE---TTTCCE-------EEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc-cccccceeEEe---ccCCcE-------EEEecCeEEEeccccccc
Confidence            456778899999999999999999999996 89999998865   245664       679999999999988754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.1e-06  Score=63.36  Aligned_cols=65  Identities=15%  Similarity=0.318  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+...|.+.++..+++|++.+++++++.+ +++|+||...+   ..+|+.       ..+.|+.||+|+|..+.+
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~---~~~g~~-------~~~~AkaVILATGG~g~~  199 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMN---MMEGTL-------VQIRANAVVMATGGAGRV  199 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEE---TTTTEE-------EEEECSCEEECCCCCGGG
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEec-CCcceeEEEEE---cCCCcE-------EEEECCEEEEcCCCcccc
Confidence            344444455555568999999999999996 79999998765   234443       578999999999988765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=5.9e-06  Score=53.49  Aligned_cols=53  Identities=23%  Similarity=0.312  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      ..+.+.|.+.++++|++|+++++|++|.+++ ++++++|.++                |.+++||.||..
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~----------------g~~~~ad~VI~~  289 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK----------------LGTFKAPLVIAD  289 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET----------------TEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcC----------------CEEEECCEEEEC
Confidence            4577788999999999999999999998864 4678888764                478999998863

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.2e-05  Score=51.88  Aligned_cols=54  Identities=22%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+-+++.+..++.||++++++.|+++..+ ++++ .|.+.+               |.+|.||.||.|.|.
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~-~v~l~~---------------G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKD---------------GRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETT---------------SCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEE-EEEECC---------------CCEEECCEEEEeecC
Confidence            35567888999999999999999999875 5554 477765               678999999999984

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.2e-05  Score=50.57  Aligned_cols=55  Identities=24%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      ..+-+++.+..++.|+++++++.++.+..++++.+. |.+.+               |.++.+|.||+|+|
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~-v~~~~---------------g~~~~~D~vi~a~G  116 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELED---------------GRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEE-EEETT---------------SCEEEESEEEECSC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEE-EEECC---------------CCEEEcCEEEEecC
Confidence            356788899999999999999999999875445544 77765               57899999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.01  E-value=1.3e-05  Score=50.16  Aligned_cols=55  Identities=25%  Similarity=0.322  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+-+++.+..++.|++|++++.++++..++++ +..|...+               |.++.+|.||+|+|.
T Consensus        63 ~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g-~~~v~~~~---------------g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          63 ELRKQLTEQLRANGINVRTHENPAKVTKNADG-TRHVVFES---------------GAEADYDVVMLAIGR  117 (117)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEEETT---------------SCEEEESEEEECSCE
T ss_pred             hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCC-EEEEEECC---------------CCEEEcCEEEEecCC
Confidence            46677888899999999999999999875444 45577765               578999999999983

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.00  E-value=1.8e-05  Score=51.00  Aligned_cols=55  Identities=22%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+.+++.+..++.||++++++.|+++.... ++++..|.+.+               |.++.||.||+|.|
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~---------------G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED---------------GTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT---------------SCEEECSEEEECCC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCC---------------CCEEECCEEEEeeC
Confidence            445666777899999999999999997643 46888898876               67899999999987

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.97  E-value=9.8e-06  Score=56.32  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          10 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        10 ~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ...+.+.+..+.+.|.+.+++.|..++..........++++. +.|...+     +|+       ..+++|++||.|||.
T Consensus        95 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~g~-------~~~i~a~~vVgADG~  161 (292)
T d1k0ia1          95 KTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFER-----DGE-------RLRLDCDYIAGCDGF  161 (292)
T ss_dssp             CCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEE-----TTE-------EEEEECSEEEECCCT
T ss_pred             ccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCc-eEEEEec-----CCc-------EEEEEeCEEEECCCC
Confidence            347889999999999999999999888888777776643333 3455533     222       146899999999999


Q ss_pred             CchhhHHHh
Q psy9487          90 HGHLTKSLS   98 (101)
Q Consensus        90 ~s~l~~~l~   98 (101)
                      +|.+.+.+.
T Consensus       162 ~S~vR~~i~  170 (292)
T d1k0ia1         162 HGISRQSIP  170 (292)
T ss_dssp             TCSTGGGSC
T ss_pred             CCcccceee
Confidence            999977653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.91  E-value=3.4e-05  Score=48.06  Aligned_cols=58  Identities=14%  Similarity=0.300  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+-+++.+..++.|+++++++.++++..++++.+..+.....+     .       +.+|.||.||+|.|
T Consensus        64 ~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~-----~-------~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          64 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPN-----G-------EMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETT-----E-------EEEEECSCEEECCC
T ss_pred             chhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCC-----C-------CEEEEcCEEEEEEC
Confidence            3456778888999999999999999998766777766554311     1       36899999999987

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.79  E-value=3.5e-05  Score=55.10  Aligned_cols=76  Identities=13%  Similarity=0.028  Sum_probs=55.9

Q ss_pred             CCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEE
Q psy9487           6 PMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF   85 (101)
Q Consensus         6 ~~~~~~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~   85 (101)
                      ++.......+.|..+.++|...|++.+..|.++|.|+++..+ +++.. |.+.+   .+.++.      .....+|.||+
T Consensus       101 ~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~w~-Vt~~~---~~~~~~------~~~~~~d~VI~  169 (335)
T d2gv8a1         101 SFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSWV-VTYKG---TKAGSP------ISKDIFDAVSI  169 (335)
T ss_dssp             CCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEEE-EEEEE---SSTTCC------EEEEEESEEEE
T ss_pred             cCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEec-CCEEE-EEEEe---cCCCCe------EEEEEeeEEEE
Confidence            334444445779999999999999999999999999999986 56533 55543   122221      24677999999


Q ss_pred             eecCCch
Q psy9487          86 AEGCHGH   92 (101)
Q Consensus        86 A~G~~s~   92 (101)
                      |+|..+.
T Consensus       170 AtG~~s~  176 (335)
T d2gv8a1         170 CNGHYEV  176 (335)
T ss_dssp             CCCSSSS
T ss_pred             ccccccc
Confidence            9998763

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.77  E-value=8.2e-05  Score=46.53  Aligned_cols=52  Identities=21%  Similarity=0.303  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      .+-+++.+..++.|+++++++.++++..++++++. |.+.+               |.++.||.||.|
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~-v~~~~---------------G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVELNADGSKS-VTFES---------------GKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEE-EEETT---------------SCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEE-EEECC---------------CcEEEeCEEEEe
Confidence            45677888889999999999999999875455554 77765               578999999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=9.2e-05  Score=53.00  Aligned_cols=66  Identities=21%  Similarity=0.270  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ..+.+.|.+++++.++++++.+.+.+++.++++++.++...+   ..+|+.       ..+.|+.||+|+|..+.+
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~---~~~g~~-------~~~~a~~vIlAtGG~~~l  208 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALC---IETGEV-------VYFKARATVLATGGAGRI  208 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEE---TTTCCE-------EEEEESCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEE---ccCCcE-------EEEeccEEEEcCCCcccc
Confidence            356777899999999999999999999987678888877654   245554       679999999999988766

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.69  E-value=9.6e-05  Score=46.46  Aligned_cols=57  Identities=19%  Similarity=0.172  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      ..+-+++.+..++.|++|++++.++++..+ ++.+. |...+.    ++        +.++.+|.||+|.|
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~----~~--------~~~~~~D~vlvAvG  119 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVT-VKFVDA----EG--------EKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEE-EEEESS----SE--------EEEEEESEEEECSC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe-CCEEE-EEEEEC----CC--------CEEEECCEEEEeeC
Confidence            346677888889999999999999999885 44433 555431    11        26899999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.00021  Score=45.06  Aligned_cols=58  Identities=21%  Similarity=0.188  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      .+-+.+.+..++.||+|++++.|+++..++++..+.+...+   .++++       +.++.+|.|++|
T Consensus        65 ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~---~~~~~-------~~~ie~D~vlvA  122 (122)
T d1v59a2          65 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVED---TKTNK-------QENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEE---TTTTE-------EEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEe---CCCCC-------eEEEEeCEEEEC
Confidence            46667788888999999999999999886667666666543   12222       368999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.39  E-value=0.00037  Score=43.88  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      ..+-++|.+..++.|++|++++.+.++..++++..+.+...+     +|+       ...+.+|.|++|+
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~-----~g~-------~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSA-----GGE-------QTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESS-----SCC-------CEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECC-----CCe-------EEEEEcCEEEEcC
Confidence            456677889999999999999999999875455444454432     333       2679999999984

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00016  Score=50.86  Aligned_cols=63  Identities=13%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecC------CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhh
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGD------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT   94 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~------g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~   94 (101)
                      ..+.+.+++.|++++.++++.+++.+++      ++|+||...+   ..+++.       ..+.++.||+|+|..+.+.
T Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~---~~~g~~-------~~~~ak~VilAtGG~~~~~  210 (305)
T d1chua2         142 TLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWN---RNKETV-------ETCHAKAVVLATGGASKVY  210 (305)
T ss_dssp             CCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEE---TTTTEE-------EEEECSEEEECCCCCGGGS
T ss_pred             HHHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEe---CCCCcE-------EEEeecceEEeeeccccce
Confidence            3445666779999999999999999632      2799998864   123332       5789999999999988763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.34  E-value=0.00028  Score=44.50  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+.+++.+..+++||++++++.|+++.   ++.   |.+.+               |.++.+|.||+|.|
T Consensus        73 ~~~~~~~~~l~~~GV~i~~~~~v~~~~---~~~---v~l~d---------------g~~i~~D~vi~a~G  121 (121)
T d1d7ya2          73 TLADFVARYHAAQGVDLRFERSVTGSV---DGV---VLLDD---------------GTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHHTTTCEEEESCCEEEEE---TTE---EEETT---------------SCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHCCcEEEeCCEEEEEe---CCE---EEECC---------------CCEEECCEEEEeeC
Confidence            455677788899999999999998863   342   55555               57899999999987

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.28  E-value=0.001  Score=44.47  Aligned_cols=75  Identities=24%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHH--CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          11 GNYVVRLGHVVKWLGEQAEA--MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~--~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      ..+...+.....++...+.+  .++++..++.++.+..+ ++.+. |.+.+    .+++.       .++.++++|.|||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~v~-v~~~~----g~~~~-------~~~~ad~vi~ADG  163 (288)
T d3c96a1          97 PQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEER-DGRVL-IGARD----GHGKP-------QALGADVLVGADG  163 (288)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEE-TTEEE-EEEEE----TTSCE-------EEEEESEEEECCC
T ss_pred             cccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeec-CCcEE-EEEEc----CCCCe-------EEEeeceeeccCC
Confidence            45667777777776665543  68999999999998875 45543 55554    33332       5899999999999


Q ss_pred             CCchhhHHHh
Q psy9487          89 CHGHLTKSLS   98 (101)
Q Consensus        89 ~~s~l~~~l~   98 (101)
                      .+|.+.+.+.
T Consensus       164 ~~S~vr~~~~  173 (288)
T d3c96a1         164 IHSAVRAHLH  173 (288)
T ss_dssp             TTCHHHHHHC
T ss_pred             ccceeeeeec
Confidence            9999977664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.27  E-value=0.0002  Score=47.43  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=43.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          11 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        11 ~~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +.+...+.-+.+.+..-+++.|++|+++++|++|..+ ++++. |.+.+     +++       ..++.||.||+|.+++
T Consensus       212 ~~~~~~~~g~~~~~~~l~~~~g~~i~~~~~V~~I~~~-~~~~~-v~~~~-----~~~-------~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         212 GALSTFDGGLQVLIDALAASLGDAAHVGARVEGLARE-DGGWR-LIIEE-----HGR-------RAELSVAQVVLAAPAH  277 (347)
T ss_dssp             CCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC---CCE-EEEEE-----TTE-------EEEEECSEEEECSCHH
T ss_pred             CcccccCCchHHHHHHHHHHhhcccccCCEEEEEEEe-CCeEE-EEEEc-----CCe-------EEEEECCEEEECCCHH
Confidence            3444444445555555567789999999999999886 45544 33332     111       2679999999998864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0006  Score=42.89  Aligned_cols=62  Identities=21%  Similarity=0.122  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+-+++.+..++.|++|++++.++++..++++..+.......|  +..+.      ...+.+|.||.|.|
T Consensus        64 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g--~~~~~------~~~~~~D~vl~a~G  125 (125)
T d3grsa2          64 MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPG--RLPVM------TMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTT--SCCEE------EEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCC--cCcCc------cccccCCEEEEEeC
Confidence            4667788888999999999999999987644422222222211  11110      14578999999987

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.21  E-value=0.00016  Score=51.73  Aligned_cols=68  Identities=18%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHCC-CEEecCCceeEEEEecCC-cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          17 LGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        17 r~~~d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g-~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      +...++.++..|++.| ++|++++.|+.|+.++++ ..++|+..+... ..++       ..+++|+.||+|+|+-..
T Consensus       217 k~s~~~~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~-~~~~-------~~~i~Ak~VVLaAGai~T  286 (367)
T d1n4wa1         217 KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDG-KLLA-------TKEISCRYLFLGAGSLGS  286 (367)
T ss_dssp             BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTC-CEEE-------EEEEEEEEEEECSHHHHH
T ss_pred             ccChhHhhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCC-ccee-------EEEEecCEEEEecchhcC
Confidence            3344555677888888 999999999999997443 456666654211 0111       147999999999996543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.19  E-value=0.00082  Score=48.04  Aligned_cols=62  Identities=13%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             EEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          15 VRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv--~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..+..+.++|.+.|++.++  .|.++|+|+++.++++....-|++.+               +.+++++.||.|+|..+
T Consensus        82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~---------------~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH---------------GDRIRARYLIMASGQLS  145 (298)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETT---------------CCEEEEEEEEECCCSCC
T ss_pred             CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccc---------------ccccccceEEEeecccc
Confidence            4678899999999999998  59999999999997666667788865               46899999999999754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.18  E-value=0.0014  Score=40.82  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEE-EccEEEEe
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL-HAKVTIFA   86 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i-~A~~VI~A   86 (101)
                      .+-+++.+..++.|+++++++.++++...+++.+ .|.+.+               |..+ .+|.||.|
T Consensus        64 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~---------------G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSD---------------GRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETT---------------SCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECC---------------CCEEEeCCEEEEe
Confidence            4566777788889999999999999987555654 477765               4455 46999987

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.16  E-value=0.00032  Score=50.85  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccE-EEEeecCC
Q psy9487          19 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV-TIFAEGCH   90 (101)
Q Consensus        19 ~~d~~l~~~A~~-~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~-VI~A~G~~   90 (101)
                      .....++..|.+ .+++|++++.|++|++| +++++||+..+....+++        ..+++|+. ||+|+|+-
T Consensus       191 s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d-~~ra~GV~~~~~~~~~~~--------~~~v~a~~eVILsAGai  255 (360)
T d1kdga1         191 GPVATYLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNG--------FIPVTPKGRVILSAGAF  255 (360)
T ss_dssp             HHHHTHHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGG--------EEEEEEEEEEEECSHHH
T ss_pred             cccchhhhhhhcccccccccCcEEEEEEEe-CCEEEEEEEEecccCcce--------EEEEEECCEEEEechhH
Confidence            344444555655 45899999999999996 789999998752211111        13566655 99999953

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.14  E-value=0.00018  Score=51.55  Aligned_cols=64  Identities=23%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          21 VKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        21 d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      +..++..|++.| ++|++++.|++|+++ +++..+|.....+  .+++.    -...+++|+.||+|+|+-.
T Consensus       225 ~~~~L~~a~~~g~~~i~t~~~V~~I~~~-~~~~~~V~v~~~~--~~~~~----~~~~~~~A~~VILaAGai~  289 (370)
T d3coxa1         225 DKTYLAQAAATGKLTITTLHRVTKVAPA-TGSGYSVTMEQID--EQGNV----VATKVVTADRVFFAAGSVG  289 (370)
T ss_dssp             GGTHHHHHHHTTCEEEECSEEEEEEEEC-SSSSEEEEEEEEC--TTSCE----EEEEEEEEEEEEECSHHHH
T ss_pred             HHHHHHHHHhCCCcEEEecCcEEEEEEc-CCCeEEEEEEEeC--Cccce----eeEEEEECCEEEEeeCHHH
Confidence            344456677777 899999999999996 4554555443211  22221    0014699999999999643

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.05  E-value=0.00057  Score=43.36  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+-+.|.+..++.|+++++++.++++..++++ +. |.+.+    ++|+       ..++.+|.|++|.|.
T Consensus        68 ~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g-~~-v~~~~----~~g~-------~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          68 DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG-VY-VTFEG----ANAP-------KEPQRYDAVLVAAGR  125 (125)
T ss_dssp             HHHHHHHHHHGGGEEEEECSCEEEEEEEETTE-EE-EEEES----SSCC-------SSCEEESCEEECCCE
T ss_pred             hHHHHHHHHHHHcCcccccCcEEEEEEEcCCc-EE-EEEEe----CCCC-------eEEEEcCEEEEecCC
Confidence            44566778888999999999999999886443 32 44433    2232       257999999999983

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.01  E-value=0.00047  Score=42.69  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+-+.+.+..++.|+++++++.|+++.   ++...-...       +++       +.++.+|.||+|+|
T Consensus        63 ~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~~~~-------~~~-------~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 ELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDG-------KGG-------QLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEEECS-------SSC-------CCEECCSCEEECCC
T ss_pred             hhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEEEEc-------CCC-------eEEEEcCEEEEecC
Confidence            356677888899999999999999873   343321111       111       25799999999988

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.00  E-value=0.00021  Score=52.20  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCC---cEEEEEeccccccCCCCCCcCCCCCeEEEccE-EEEeecCCc
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKV-TIFAEGCHG   91 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g---~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~-VI~A~G~~s   91 (101)
                      ....++...++..+++|++++.|++|++++++   +++||+..+    .+|+.       .+++|+. ||+|+|+-.
T Consensus       226 s~~~~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~----~~g~~-------~~v~A~keVILsAGAi~  291 (385)
T d1cf3a1         226 AAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT----HKGNT-------HNVYAKHEVLLAAGSAV  291 (385)
T ss_dssp             HHHHHTGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE----ETTEE-------EEEEEEEEEEECSCTTT
T ss_pred             hhhhhcCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc----CCCCE-------EEEEeCCEEEEcCchhh
Confidence            34556666667789999999999999997443   899998754    23332       5789987 999999643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.94  E-value=0.0012  Score=41.40  Aligned_cols=50  Identities=26%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      .+.+++.+..++.|+++++++.++++.-  ++++..|.+ +               |.++.||.||+|
T Consensus        73 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~--~~~~~~v~~-d---------------g~~i~~D~vi~a  122 (123)
T d1nhpa2          73 EFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVT-D---------------KNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEE-S---------------SCEEECSEEEEC
T ss_pred             hhHHHHHHHhhcCCeEEEeCceEEEEEc--CCCEEEEEe-C---------------CCEEECCEEEEE
Confidence            4667778888999999999999999864  466666644 3               478999999987

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.84  E-value=0.0018  Score=44.79  Aligned_cols=83  Identities=12%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+...+..++.|+.+.++..++.++.++.+.+++.+ ++++.|+........... .......+..++|+.||+|+|..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~-~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         108 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNH-HTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCT-TTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             eecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeee-cccccccceeeccceEEECcCCCc
Confidence            445567789999999999999999999999999996 789998875421111111 111223357899999999999877


Q ss_pred             hhhHH
Q psy9487          92 HLTKS   96 (101)
Q Consensus        92 ~l~~~   96 (101)
                      .....
T Consensus       186 ~~~~~  190 (278)
T d1rp0a1         186 PFGAT  190 (278)
T ss_dssp             TTTTH
T ss_pred             ccccc
Confidence            65443

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.82  E-value=0.00025  Score=52.12  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=46.9

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEecC---CcEEEEEeccccccCCCCCCcCCCCCeEEEccE-EEEeecCCc
Q psy9487          16 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKV-TIFAEGCHG   91 (101)
Q Consensus        16 ~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~---g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~-VI~A~G~~s   91 (101)
                      +++....++...+...+++|++++.|++|+++++   .+++||+..+    .++.       ..+++|+. ||+|+|+-.
T Consensus       229 r~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~----~~g~-------~~~v~A~keVILaAGai~  297 (391)
T d1gpea1         229 RVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT----NKAV-------NFDVFAKHEVLLAAGSAI  297 (391)
T ss_dssp             BCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE----ETTE-------EEEEEEEEEEEECSCTTT
T ss_pred             ccchhhhccCccccchhhhhhccceeeEEeeeCCCCCceEEeeEEec----CCCe-------EEEEEeCCEEEEecchhc
Confidence            3444555566666778999999999999998632   2799998764    1222       15789987 999999643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.82  E-value=0.0014  Score=40.86  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+-+.+.++.++.|+++++++.+.++.-  +    ++.++                +..+.+|.||.|.|.
T Consensus        73 ~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~----~v~~~----------------~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          73 ELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTN----------------SGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEET----------------TEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHCCcEEEeCCEEEEEeC--C----EEEeC----------------CCEEECCEEEEEEEe
Confidence            4566778888999999999999988742  2    34443                378999999999984

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=96.81  E-value=0.0017  Score=45.57  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=37.0

Q ss_pred             CCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          31 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        31 ~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      .+.+|+.+ +|.+++.+ ++++.||++.+               |.+++|+.||+|+|..
T Consensus        81 ~nL~i~q~-~V~dli~e-~~~v~gV~t~~---------------G~~~~AkaVILtTGTF  123 (230)
T d2cula1          81 RPLHLFQA-TATGLLLE-GNRVVGVRTWE---------------GPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TTEEEEEC-CEEEEEEE-TTEEEEEEETT---------------SCCEECSEEEECCTTC
T ss_pred             cCHHHHhc-cceeeEec-ccceeeEEecc---------------ccEEEEeEEEEccCcc
Confidence            58999876 68899885 78999999976               6789999999999954

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.0025  Score=39.88  Aligned_cols=60  Identities=13%  Similarity=0.224  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCC--cEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g--~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      .+.+.+.+..++.|++|++++.|+++...+++  ....+.....   .+++       ...+.+|.|+.|.|
T Consensus        61 ~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~---~~~~-------~~~~~~D~vl~AiG  122 (122)
T d1h6va2          61 DMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKST---NSEE-------TIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECT---TSCE-------EEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEEC---CCCc-------EEEEECCEEEEEeC
Confidence            35677888899999999999999999754333  2233443321   1111       24577899999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0023  Score=43.40  Aligned_cols=53  Identities=15%  Similarity=-0.036  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      ...+....+++.|++|+++++|++|..+ ++.|. |++.+               |.++.||.||+|...
T Consensus       209 ~~~~~~~l~~~~g~~i~~~~~v~~I~~~-~~~v~-v~~~~---------------g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         209 SGQVSERIMDLLGDRVKLERPVIYIDQT-RENVL-VETLN---------------HEMYEAKYVISAIPP  261 (383)
T ss_dssp             THHHHHHHHHHHGGGEEESCCEEEEECS-SSSEE-EEETT---------------SCEEEESEEEECSCG
T ss_pred             hhHHHHHHHHHcCCeEEecCcceEEEec-CCeEE-EEECC---------------CCEEECCEEEECCCH
Confidence            3444444567789999999999999885 55655 77765               578999999999754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.48  E-value=0.0079  Score=36.77  Aligned_cols=54  Identities=13%  Similarity=0.199  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          19 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        19 ~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      .+.+.+.+..++.|++|++++.++++..++ +.+. |....     +|+       ..++.+|.||+.
T Consensus        64 ~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~-~~~~-v~~~~-----~g~-------~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLKKKGVEVVTNALAKGAEERE-DGVT-VTYEA-----NGE-------TKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEEE-EEEEE-----TTE-------EEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhcCCEEEcCCEEEEEEEcC-CEEE-EEEEe-----CCC-------EEEEEeEEEEEC
Confidence            456677888899999999999999998753 3332 33322     222       257999999974

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.47  E-value=0.0045  Score=41.45  Aligned_cols=57  Identities=9%  Similarity=0.004  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          20 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        20 ~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      +......-+++.|++|+++++|++|..+ ++++. |...+    .+++       +.++.||.||+|.+.
T Consensus       237 ~~~l~~~l~~~~g~~i~~~~~V~~I~~~-~~~v~-v~~~~----~~~~-------~~~~~aD~VI~A~p~  293 (370)
T d2iida1         237 MDKLPTAMYRDIQDKVHFNAQVIKIQQN-DQKVT-VVYET----LSKE-------TPSVTADYVIVCTTS  293 (370)
T ss_dssp             TTHHHHHHHHHTGGGEESSCEEEEEEEC-SSCEE-EEEEC----SSSC-------CCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHhcCCccccCceEEEEEEe-CCeEE-EEEEe----cCCC-------eEEEEeeEEEecCCH
Confidence            3333333457889999999999999986 55554 33222    1122       368999999999863

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.42  E-value=0.0018  Score=45.23  Aligned_cols=54  Identities=15%  Similarity=0.404  Sum_probs=41.2

Q ss_pred             HHCCCEEecCCceeEEEEec-CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          29 EAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        29 ~~~Gv~i~~gt~v~~i~~~~-~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ...|++|++++.|.+|++++ +++++||+..+.   .+|+.       ..++|+.||+|.|+...
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~---~~g~~-------~~i~a~~vilaaGa~~t  283 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDL---ISGDR-------FEIKADVYVLTAGAVHN  283 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEET---TTCCE-------EEEEEEEEEECSCHHHH
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEEC---CCCEE-------EEEeceEEEeccCccCC
Confidence            34579999999999999974 358999998751   23432       57999999999886543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.22  E-value=0.012  Score=39.13  Aligned_cols=55  Identities=16%  Similarity=0.017  Sum_probs=42.8

Q ss_pred             HHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchhhHHHh
Q psy9487          27 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS   98 (101)
Q Consensus        27 ~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l~~~l~   98 (101)
                      .....++.++.++.+.++..+ +..+ .|.+.+               |.++.++++|.|+|.+|.+...+.
T Consensus       105 ~~~~~~~~~~~~~~v~~~~~~-~~~v-~v~~~d---------------G~~~~~d~~v~adG~~s~~r~~~~  159 (265)
T d2voua1         105 YELFGPERYHTSKCLVGLSQD-SETV-QMRFSD---------------GTKAEANWVIGADGGASVVRKRLL  159 (265)
T ss_dssp             HHHHCSTTEETTCCEEEEEEC-SSCE-EEEETT---------------SCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHhcccceeecCcEEEEEEee-CCce-EEEECC---------------CCEEEEEEEecccccccccccccc
Confidence            345567999999999999874 3443 366655               578999999999999999976653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0017  Score=43.80  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=38.3

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      ..++++.|++++++++|+.|..+ +.   .|.+.+               |.+|.+|.+|+|+|+..+
T Consensus        90 ~~~~~~~gI~~~~g~~V~~id~~-~~---~V~l~d---------------G~~i~~d~lViAtG~~~~  138 (213)
T d1m6ia1          90 LPHIENGGVAVLTGKKVVQLDVR-DN---MVKLND---------------GSQITYEKCLIATGGTEP  138 (213)
T ss_dssp             TTTSTTCEEEEEETCCEEEEEGG-GT---EEEETT---------------SCEEEEEEEEECCCEEEE
T ss_pred             HHHHHHCCeEEEeCCEEEEeecc-Cc---eeeecc---------------ceeeccceEEEeeeeecc
Confidence            34567889999999999999654 32   467766               678999999999996543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=95.76  E-value=0.0025  Score=45.98  Aligned_cols=58  Identities=14%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecC--CcEEEEEeccccccCCCCCCcCCCCCeEEEccE-EEEeecCC
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKV-TIFAEGCH   90 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~--g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~-VI~A~G~~   90 (101)
                      ++..+...+++|++++.|++|+++++  .+++||+..+    .++.+.     ...++|+. ||+|+|+-
T Consensus       200 ~l~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~----~~g~~~-----~~~v~a~~eVILsAGaI  260 (351)
T d1ju2a1         200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD----SNGTPH-----QAFVRSKGEVIVSAGTI  260 (351)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEEC----TTSCEE-----EEEEEEEEEEEECCHHH
T ss_pred             hhccchhhhhhhhccchhhceeeeccccceeeEEEEEe----CCCceE-----EEEeecCcEEEEeCccc
Confidence            45567788999999999999999632  3899999875    233210     13467754 99999953

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0089  Score=37.97  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      +....+..|+++++++.+.++.  +++...  ...       |+       ..+|.||.||+|.|
T Consensus       114 ~~~~~~~~gv~~~~~~~v~~i~--~~gv~~--~~~-------g~-------e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         114 HRTTLLSRGVKMIPGVSYQKID--DDGLHV--VIN-------GE-------TQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEE--TTEEEE--EET-------TE-------EEEECCSEEEECCC
T ss_pred             HHHHHhhCCeEEEeeeEEEEEc--CCCCEE--ecC-------Ce-------EEEEECCEEEECCC
Confidence            3677889999999999999873  344332  211       11       25799999999998

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.07  E-value=0.031  Score=36.08  Aligned_cols=67  Identities=19%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecC
Q psy9487          22 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        22 ~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+...+|.+.+++++..+...++..+ ++++.+++....-.+.+|...+.=--..+|.||.||+|-|+
T Consensus        87 ~~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3          87 PEEVELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             hhheeecccccceeEeccccEEEEec-CCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            45667888999999999998998875 77888877643211222211000000257999999999884

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.94  E-value=0.05  Score=37.75  Aligned_cols=60  Identities=20%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEec--CCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCchh
Q psy9487          24 LGEQAEAMGVEIYPGIPASEVLYHG--DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL   93 (101)
Q Consensus        24 l~~~A~~~Gv~i~~gt~v~~i~~~~--~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~l   93 (101)
                      ....+...++.++..+.++.++...  ++.+.++...+   .++|+.       ..|+|+.||+|+|..+.+
T Consensus       158 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~---~~~G~~-------~~i~Ak~VILATGG~~~~  219 (356)
T d1jnra2         158 EAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFS---VREPKF-------YVFKAKAVILATGGATLL  219 (356)
T ss_dssp             HHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEE---SSSSCE-------EEEECSEEEECCCCBCSS
T ss_pred             HHHHhhhcceEEEEEEEEEEeeeecccccceeeeEEEE---eecCcE-------EEeeCCEEEEcCCCcccc
Confidence            3445566788999999888888642  35777776654   234543       679999999999987754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.11  Score=32.11  Aligned_cols=56  Identities=18%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             HHHHHHHHHCC-CEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          22 KWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        22 ~~l~~~A~~~G-v~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      ..+.+++++.+ +++++++++.++.-+ ++.+.+|++.+   .++|+.       .++.++-+.++=|
T Consensus        69 ~~~~~~~~~~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~---~~tge~-------~~l~vdgvFv~IG  125 (126)
T d1fl2a2          69 QVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRD---RVSGDI-------HNIELAGIFVQIG  125 (126)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEEEE---TTTCCE-------EEEECSEEEECSC
T ss_pred             cccccccccccceeEEcCcceEEEEcc-ccceeeEEEEE---CCCCCE-------EEEECCEEEEEeC
Confidence            55677887765 999999999999874 57899999876   234553       6899999888755

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.15  E-value=0.12  Score=39.41  Aligned_cols=56  Identities=11%  Similarity=0.096  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEe-cCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEee
Q psy9487          17 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE   87 (101)
Q Consensus        17 r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~-~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~   87 (101)
                      .+.+-|.+.+-+.=.|..+..++.+.+|+++ +++++.+|...+               |.+++++.||...
T Consensus       375 ~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~---------------g~~i~~k~vI~~p  431 (491)
T d1vg0a1         375 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF---------------GQRIISKHFIIED  431 (491)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT---------------SCEEECSEEEEEG
T ss_pred             cchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccC---------------CcEEecCeEEECH
Confidence            3688999999999999999999999999996 467899988765               6799999998864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.1  Score=32.28  Aligned_cols=58  Identities=17%  Similarity=0.074  Sum_probs=41.3

Q ss_pred             HHHHHHHHH----HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeec
Q psy9487          21 VKWLGEQAE----AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG   88 (101)
Q Consensus        21 d~~l~~~A~----~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G   88 (101)
                      +.++.++++    ..++++++++.+.+|.-+ +..+.+|++.+.   ++++.      -.++.++-|+++-|
T Consensus        65 ~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~---~~~e~------~~~l~~dgvFv~iG  126 (126)
T d1trba2          65 EKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDT---QNSDN------IESLDVAGLFVAIG  126 (126)
T ss_dssp             CHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECC---TTCCC------CEEEECSEEEECSC
T ss_pred             hhHHHHHHHHhhcccceeEecceEEEEEECC-CCceEEEEEEEC---CCCce------EEEEECCEEEEEeC
Confidence            455555554    478999999999999874 567999999762   23322      24688888888755

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.85  E-value=0.078  Score=34.21  Aligned_cols=53  Identities=17%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+..++.|+++++++.|+++..+ ++.+. ++..     .+|+       ..++.+|.+|+|.|++.
T Consensus        63 ~~~l~~~gi~v~~~~~V~~i~~~-~~~v~-~~~~-----~~g~-------~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          63 GEKMESRGVNVFSNTEITAIQPK-EHQVT-VKDL-----VSGE-------ERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETT-TTEEE-EEET-----TTCC-------EEEEECSEEEECCCEEE
T ss_pred             HHHHHHCCcEEEEeeceeeEeec-cccce-eeec-----cccc-------ccccccceeeEeeccee
Confidence            35677889999999999999764 33332 3322     1232       25789999999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.57  E-value=0.011  Score=38.70  Aligned_cols=27  Identities=19%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecC
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPG   38 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~g   38 (101)
                      .++++-..+..||.++++++|++|+.+
T Consensus       136 ~~~id~~~~~~~L~~~~~~~G~~~~~~  162 (246)
T d1kifa1         136 SLILEGRKYLQWLTERLTERGVKFFLR  162 (246)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             ceEEcHHHHHHHHHHHHHHCCCEEEEe
Confidence            678899999999999999999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.064  Score=35.52  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCcee
Q psy9487          18 GHVVKWLGEQAEAMGVEIYPGIPAS   42 (101)
Q Consensus        18 ~~~d~~l~~~A~~~Gv~i~~gt~v~   42 (101)
                      ..+.+|+.+++++.||+|++++.|+
T Consensus        95 ~~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          95 YETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             HHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             HHHHHHHHHhhhcCCeEEEeCCEEc
Confidence            3566788999999999999998774

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.35  E-value=0.28  Score=30.60  Aligned_cols=56  Identities=16%  Similarity=0.231  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHCC-CEEecCCceeEEEEecC-CcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEe
Q psy9487          21 VKWLGEQAEAMG-VEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA   86 (101)
Q Consensus        21 d~~l~~~A~~~G-v~i~~gt~v~~i~~~~~-g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A   86 (101)
                      +..+.+++++.+ +++++++.+.++.=++. +.+.+++..+   .++++.       .++.++-|.+|
T Consensus        72 ~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~---~~tge~-------~~l~~dGvFVa  129 (130)
T d1vdca2          72 SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKN---VVTGDV-------SDLKVSGLFFA  129 (130)
T ss_dssp             CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEE---TTTCCE-------EEEECSEEEEC
T ss_pred             chhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEE---CCCCCE-------EEEECCEEEEE
Confidence            455678887777 99999999999987422 4688888876   234553       67888877665

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=89.40  E-value=0.11  Score=33.57  Aligned_cols=52  Identities=12%  Similarity=0.152  Sum_probs=37.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          12 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        12 ~~~v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+.++-..|..+|.++++++|+.|... +++++              +               .....++.||+|+|.++
T Consensus       136 ~~~~d~~~~~~~l~~~~~~~Gv~i~~~-~v~~~--------------~---------------~~~~~~~~vv~a~G~~a  185 (268)
T d1c0pa1         136 TLSVHAPKYCQYLARELQKLGATFERR-TVTSL--------------E---------------QAFDGADLVVNATGLGA  185 (268)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEEC-CCSBG--------------G---------------GTCSSCSEEEECCGGGG
T ss_pred             ceecCHHHHHHHHHHHHHHCCCEEEEe-Eecch--------------H---------------HccccceEEEECCchhh
Confidence            456788899999999999999998643 11111              1               12356889999999887


Q ss_pred             hh
Q psy9487          92 HL   93 (101)
Q Consensus        92 ~l   93 (101)
                      ..
T Consensus       186 ~~  187 (268)
T d1c0pa1         186 KS  187 (268)
T ss_dssp             GT
T ss_pred             hh
Confidence            53

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.85  E-value=0.89  Score=27.98  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=37.0

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEecccc-cc----CCC-CCCcCCCCCeEEEccEEEEeecC
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG-IA----KDG-SPKDTFARGMELHAKVTIFAEGC   89 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g-~~----~~g-~~~~~~~~g~~i~A~~VI~A~G~   89 (101)
                      .+.++.++.|+++++++.+.++.-   +.+. +...... .+    ..+ .+.........+.+|.+|+|+|.
T Consensus        87 ~~~~~l~~~GV~i~~~~~v~~i~~---~~v~-l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtgR  155 (156)
T d1djqa2          87 NMMRRLHELHVEELGDHFCSRIEP---GRME-IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR  155 (156)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEET---TEEE-EEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred             HHHHHHhhccceEEeccEEEEecC---cceE-EEeeeccccceeeeeeEEEecccCCccCcEecceEEEEecC
Confidence            457788889999999999999852   3322 2211100 00    000 11111122467899999999985

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.46  E-value=0.91  Score=28.79  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCC
Q psy9487          15 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH   90 (101)
Q Consensus        15 v~r~~~d~~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~   90 (101)
                      +....|...+.+++++.|+++..+ .|.++...  ++...+.+..                .++.++.++++.|..
T Consensus        64 ~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~--~~~~~v~~~~----------------~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          64 ILGVELTDKFRKQSERFGTTIFTE-TVTKVDFS--SKPFKLFTDS----------------KAILADAVILAIGAV  120 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECC-CCCEEECS--SSSEEEECSS----------------EEEEEEEEEECCCEE
T ss_pred             ccchHHHHHHHHHHHhhcceeeee-eEEecccc--cCcEEecccc----------------eeeeeeeEEEEeeee
Confidence            556777777799999999999877 57777653  3334455543                678999999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=86.77  E-value=0.45  Score=29.84  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             HCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          30 AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        30 ~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      ..++++++++.++++..+  ..  .+.+.+               |.++.+|.+|.|.|...
T Consensus        67 ~~~i~~~~~~~v~~i~~~--~~--~~~~~~---------------g~~~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQ--AH--TVALSD---------------GRTLPYGTLVLATGAAP  109 (183)
T ss_dssp             STTCEEEETCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             cCCeEEEEeccccccccc--cc--eeEecC---------------CcEeeeeeEEEEEEEEc
Confidence            458999999999888643  32  244544               57899999999999654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.00  E-value=0.36  Score=29.69  Aligned_cols=47  Identities=17%  Similarity=0.085  Sum_probs=33.8

Q ss_pred             HHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCc
Q psy9487          25 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG   91 (101)
Q Consensus        25 ~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s   91 (101)
                      .+..++.|+++++++.++.+..  +.+++   ..+               +.++.+|.+|+|.|...
T Consensus        59 ~~~~~~~~v~~~~~~~v~~i~~--~~~~~---~~~---------------~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          59 LDWYRKRGIEIRLAEEAKLIDR--GRKVV---ITE---------------KGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             HHHHHHHTEEEECSCCEEEEET--TTTEE---EES---------------SCEEECSEEEECCCEEC
T ss_pred             HHHHHhccceeeeecccccccc--ccccc---ccc---------------ccccccceeEEEEEecC
Confidence            3455677999999999988843  33432   222               36799999999999753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.37  E-value=0.39  Score=30.75  Aligned_cols=14  Identities=21%  Similarity=0.299  Sum_probs=12.1

Q ss_pred             eEEEccEEEEeecC
Q psy9487          76 MELHAKVTIFAEGC   89 (101)
Q Consensus        76 ~~i~A~~VI~A~G~   89 (101)
                      .++.+|+||.|+|.
T Consensus       222 g~~~~D~VV~ATGf  235 (235)
T d1w4xa2         222 REYELDSLVLATGF  235 (235)
T ss_dssp             CEEECSEEEECCCC
T ss_pred             CEEcCCEEEeCCCC
Confidence            36899999999993

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.95  E-value=1.2  Score=29.07  Aligned_cols=58  Identities=24%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEecCCcEEEEEeccccccCCCCCCcCCCCCeEEEccEEEEeecCCch
Q psy9487          23 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH   92 (101)
Q Consensus        23 ~l~~~A~~~Gv~i~~gt~v~~i~~~~~g~v~GV~~~~~g~~~~g~~~~~~~~g~~i~A~~VI~A~G~~s~   92 (101)
                      .+....+..||+++.+........ .......|+...    .+|+.       .++.|+.||+|+|....
T Consensus        99 ~~~~~~~~~gV~vi~G~~~~~~~~-~~~~~~~v~v~~----~dg~~-------~~i~ad~viiAtG~~p~  156 (233)
T d1xdia1          99 DITAQLLSMGVQVIAGRGELIDST-PGLARHRIKATA----ADGST-------SEHEADVVLVATGASPR  156 (233)
T ss_dssp             HHHHHHHHTTCEEEESEEEECCSS-SCCSSEEEEEEC----TTSCE-------EEEEESEEEECCCEEEC
T ss_pred             ceehhhcccceeEEECcccccccc-cccccceEEEEe----cCCce-------eeeecceeeeecCcccc
Confidence            355667889999998743211100 011112233322    23332       58999999999997643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.94  E-value=0.89  Score=30.19  Aligned_cols=16  Identities=19%  Similarity=0.173  Sum_probs=12.2

Q ss_pred             eEEEccEEEEeecCCc
Q psy9487          76 MELHAKVTIFAEGCHG   91 (101)
Q Consensus        76 ~~i~A~~VI~A~G~~s   91 (101)
                      ..++|+.||+|+|+..
T Consensus       137 ~~i~a~~iiIATGs~P  152 (259)
T d1onfa1         137 EILEGRNILIAVGNKP  152 (259)
T ss_dssp             ---CBSSEEECCCCCB
T ss_pred             EEEeeeeEEEecCCCC
Confidence            5799999999999976