Psyllid ID: psy951

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNLSAL
Secondary Structure (PSIPRED)
cEEEEccccccEEEEEccccccEEEEEcccccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEEccEEEEEEcccccEEEEEccccccEEEEcccccccccEEEEEEEEccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccccEEEccccEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccEEEEEcccccccccccccccccccEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccccEEEEEcccccccEEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEEccEEEEEccccccEEEEEccccccEEEEEccccccccEEEEccccccccccccccccccccEEEccccccEEEcccccEEccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEcccccEccccccccccccccccccccccccEEEccccccccccccccccccccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEcccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mfwaetgaspriesawmdgshrrslvmtgvrhptglsvdaaMDHTLYWVDSKLNTIESVrhdgrnrqtilsgsdklqhpisldvfeNNIYWLARdtgslykqdkfgrgvpvliskdlvnpsgvkayhaqryntsapnpcsqspcshlclvipggyqcacpenatpklpgvaEIRCSaaverprplprvcqcqnggmcaesetgdltcncrqdfagtfcenytgigqgltlGRSLLYIPTLLLLLALVSATVYYVwrkrpfgktmgsalstqsvsfrqgtnvefgapafnngasLGLTIVysngpeirayeTHKRRFRDVisderriealdidpvdeiiyWVDSYDRNIRRSFMLEAQKGQVQAVISderriealdidpvdeiiyWVDSYDRNIRRSFMLEAQKGQVQagasrhqngvpassqrnlsal
Flexible Loop (DISEMBL)
mfwaetgaspriesawmdgsHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTilsgsdklqhpisLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGpeirayethkrrfrdvisderriealdidpvdeiiyWVDSYDRNIRRSFMLEAQKGqvqavisderriealdidpvdeiiYWVDSYDRNIRRSFMLEAQKGQVqagasrhqngvpassqrnlsal
Low Complexity Region (SEG)
MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRsllyiptlllllalvsatvyYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNLSAL
Disordered region (IsUnstruct)
***********************SLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRH******TILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYN********QSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML*****************************
Disordered Region (DISOPRED)
MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS*******GQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNLS**
Disordered Region (DISEMBL)
********SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYN**********PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEA***************************
Disordered Region (DISPRO)
MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPA*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNLSAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
A2ARV4	4660	Low-density lipoprotein r	yes	N/A	0.689	0.063	0.353	4e-50
P98158	4660	Low-density lipoprotein r	yes	N/A	0.684	0.062	0.354	5e-50
P98164	4655	Low-density lipoprotein r	yes	N/A	0.684	0.062	0.379	2e-48
Q04833	4753	Low-density lipoprotein r	yes	N/A	0.647	0.058	0.322	3e-38
P98157	4543	Low-density lipoprotein r	no	N/A	0.507	0.047	0.320	6e-28
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.504	0.047	0.333	4e-27
Q91ZX7	4545	Prolow-density lipoprotei	no	N/A	0.504	0.047	0.329	6e-27
Q9NZR2	4599	Low-density lipoprotein r	no	N/A	0.535	0.049	0.341	3e-26
Q9JI18	4599	Low-density lipoprotein r	no	N/A	0.528	0.049	0.333	1e-25
O88572	1613	Low-density lipoprotein r	no	N/A	0.362	0.096	0.406	3e-25

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 170/308 (55%), Gaps = 13/308 (4%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            MFW + G  P+IESAWM+G HR  L    +  P GLS+D      +YW DSK + IES++
Sbjct: 4201 MFWTDQGKQPKIESAWMNGEHRSVLASANLGWPNGLSIDYLNGDRIYWSDSKEDVIESIK 4260

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +DG +R+ I++ + K   P SLD+FE+ +YW+A++ G +++Q+KFG+G    +   +VNP
Sbjct: 4261 YDGTDRRLIINDAMK---PFSLDIFEDQLYWVAKEKGEVWRQNKFGKGNKEKLL--VVNP 4315

Query: 121  --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
              + V+ +H  RYN S  NPC Q  CSHLCL+ PGGY CACP+ +       + + C AA
Sbjct: 4316 WLTQVRIFHQLRYNQSVSNPCKQV-CSHLCLLRPGGYSCACPQGS--DFVTGSTVECDAA 4372

Query: 179  VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIP 238
             E P  +P  C+C +GG C   E     C C   ++G +CE   G+ +G+  G ++  + 
Sbjct: 4373 SELPITMPSPCRCMHGGSCYFDENDLPKCKCSSGYSGEYCE--IGLSRGIPPGTTMALLL 4430

Query: 239  TLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI 298
            T  +++ + +  +   +  R  G  + S     S+S     +       F +GA + + I
Sbjct: 4431 TFAMVIIVGALVLVGFFHYRKTGSLLPSLPKLPSLSSLAKPSENGNGVTFRSGADVNMDI 4490

Query: 299  -VYSNGPE 305
             V   GPE
Sbjct: 4491 GVSPFGPE 4498

Acts together with cubilin to mediate HDL endocytosis.
Mus musculus (taxid: 10090)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  199 bits (505), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 175/310 (56%), Gaps = 17/310 (5%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            MFW + G  P+IESAWM+G HR  LV   +  P GLS+D   D  +YW DSK + IE+++
Sbjct: 4201 MFWTDQGKQPKIESAWMNGEHRSVLVSENLGWPNGLSIDYLNDDRVYWSDSKEDVIEAIK 4260

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGR--GVPVLISKDLV 118
            +DG +R+ I++ + K   P SLD+FE+ +YW+A++ G +++Q+KFG+     VL+    V
Sbjct: 4261 YDGTDRRLIINEAMK---PFSLDIFEDKLYWVAKEKGEVWRQNKFGKENKEKVLV----V 4313

Query: 119  NP--SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS 176
            NP  + V+ +H  RYN S  NPC Q  CSHLCL+ PGGY CACP+ +       + ++C 
Sbjct: 4314 NPWLTQVRIFHQLRYNQSVSNPCKQV-CSHLCLLRPGGYSCACPQGS--DFVTGSTVQCD 4370

Query: 177  AAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLY 236
            AA E P  +P  C+C +GG C   E     C C   ++G +CE   G+ +G+  G ++  
Sbjct: 4371 AASELPVTMPPPCRCMHGGNCYFDENELPKCKCSSGYSGEYCE--VGLSRGIPPGTTMAV 4428

Query: 237  IPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGL 296
            + T ++++ + +  +  ++  R  G  + +     S+S     +       F +GA + +
Sbjct: 4429 LLTFVIVIIVGALVLVGLFHYRKTGSLLPTLPKLPSLSSLAKPSENGNGVTFRSGADVNM 4488

Query: 297  TI-VYSNGPE 305
             I V   GPE
Sbjct: 4489 DIGVSPFGPE 4498

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 18/311 (5%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            MFW + G  P+IESAWM+G  R  LV   +  PTGLS+D   +  +YW D K + IE+++
Sbjct: 4199 MFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDYLNNDRIYWSDFKEDVIETIK 4258

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDL-VN 119
            +DG +R+ I   + +  +P SLD+FE+ +YW++++ G ++KQ+KFG+G      K L VN
Sbjct: 4259 YDGTDRRVI---AKEAMNPYSLDIFEDQLYWISKEKGEVWKQNKFGQGKK---EKTLVVN 4312

Query: 120  P--SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSA 177
            P  + V+ +H  RYN S PN C Q  CSHLCL+ PGGY CACP+ ++       E  C A
Sbjct: 4313 PWLTQVRIFHQLRYNKSVPNLCKQI-CSHLCLLRPGGYSCACPQGSSFIEGSTTE--CDA 4369

Query: 178  AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY--TGIGQGLTLGRSLL 235
            A+E P  LP  C+C +GG C   ET    C C   + G +CE     GI  G T    LL
Sbjct: 4370 AIELPINLPPPCRCMHGGNCYFDETDLPKCKCPSGYTGKYCEMAFSKGISPGTTAVAVLL 4429

Query: 236  YIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLG 295
             I  ++++ AL  A  ++  R    G  + +     S+S     +       F +GA L 
Sbjct: 4430 TILLIVVIGALAIAGFFHYRRT---GSLLPALPKLPSLSSLVKPSENGNGVTFRSGADLN 4486

Query: 296  LTI-VYSNGPE 305
            + I V   GPE
Sbjct: 4487 MDIGVSGFGPE 4497

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 152/298 (51%), Gaps = 21/298 (7%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            + +++ G   +IE A MDG+HR+ +V   V  PT +++D    + +YWVD K   +++V 
Sbjct: 4345 ICYSDAGLHAKIECADMDGTHRQIIVKDLVFSPTSMAIDEGKGNRIYWVDPKYRRVDAVN 4404

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R T++        P ++DVFEN+IYWL+R++ +LY QDKFGRG   +++ DL + 
Sbjct: 4405 IDGSERTTVVH---DRHIPYAVDVFENHIYWLSRESKTLYVQDKFGRGRVSVLASDLEDG 4461

Query: 121  SGVKAYHAQRYNTS-APNPCSQSPCSHLCLVIPG-GYQCACPENATPKLPGVAEIRCSAA 178
              V+       +T    + C ++ CSHLC+ +P  G+ C CP+   P+L G     C+  
Sbjct: 4462 HTVRVSQKYAKDTQRTVSGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDG----SCATQ 4517

Query: 179  VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGL--TLGRS--- 233
                  +P+ C+C NGG C      D +C C  DF G  CE  + + + +  TL  +   
Sbjct: 4518 HVEALTMPKQCKCTNGGKCRL----DGSCECTSDFEGDQCEKESSVSRKIIGTLSENFIT 4573

Query: 234  -LLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNN 290
             LLYI   L    L+      ++++R        A +  SVSF  G  + F  P   N
Sbjct: 4574 VLLYILAFLFAFGLIGFCALNLYKRRQLLFKKNEA-ADGSVSF-HGNVISFSNPVLEN 4629

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 117/256 (45%), Gaps = 39/256 (15%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            M+W++ G  P+IE+A MDG+ R +LV   ++ PTGL+VD   +  LYW D+KL+ I S+R
Sbjct: 4014 MYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDY-HNERLYWADAKLSVIGSIR 4072

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +G +    +     L HP S+D+FE+ IY +      ++K  KFG      ++  L + 
Sbjct: 4073 LNGTDPVVAIDNKKGLSHPFSIDIFEDYIYGVTYINNRIFKIHKFGHKSVTNLTSGLNHA 4132

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACP-----ENAT------PKLPG 169
            + V  YH Q       NPC +  C  LCL+ P G  C CP     +N T      P    
Sbjct: 4133 TDVVLYH-QYKQPEVTNPCDRKKCEWLCLLSPSGPVCTCPNGKRLDNGTCVLIPSPTASA 4191

Query: 170  V------------------------AEIRCSAAVERPRPLPRVCQ--CQNGGMCAESETG 203
            V                        A+ RC       R     C   CQNGG+C  S +G
Sbjct: 4192 VVPTTDTCDLVCLNGGSCFLNARKQAKCRCQPRYNGERCQINQCSDYCQNGGLCTASPSG 4251

Query: 204  DLTCNCRQDFAGTFCE 219
              TC C   F G+ C+
Sbjct: 4252 MPTCRCPTGFTGSRCD 4267

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 118/255 (46%), Gaps = 39/255 (15%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            M+W++ G  P+IE+A MDG+ R +LV   ++ PTGL+VD   +  LYW D+KL+ I S+R
Sbjct: 4015 MYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDY-HNERLYWADAKLSVIGSIR 4073

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +G +          L HP S+DVFE+ IY +      ++K  KFG    V ++  L + 
Sbjct: 4074 LNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLVNLTGGLSHA 4133

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACP-----ENAT----------- 164
            S V  YH Q       NPC +  C  LCL+ P G  C CP     +N T           
Sbjct: 4134 SDVVLYH-QHKQPEVTNPCDRKKCEWLCLLSPSGPVCTCPNGKRLDNGTCVPVPSPTPPP 4192

Query: 165  -PKLPGVAEIRC---SAAVERPRPLPRV-CQ----------------CQNGGMCAESETG 203
                PG   ++C    +     R  P+  CQ                C+NGG CA S +G
Sbjct: 4193 DAPRPGTCNLQCFNGGSCFLNARRQPKCRCQPRYTGDKCELDQCWEHCRNGGTCAASPSG 4252

Query: 204  DLTCNCRQDFAGTFC 218
              TC C   F G  C
Sbjct: 4253 MPTCRCPTGFTGPKC 4267

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 117/255 (45%), Gaps = 39/255 (15%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            M+W++ G  P+IE+A MDG+ R +LV   ++ PTGL+VD   +  LYW D+KL+ I S+R
Sbjct: 4016 MYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDY-HNERLYWADAKLSVIGSIR 4074

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +G +          L HP S+DVFE+ IY +      ++K  KFG    + ++  L + 
Sbjct: 4075 LNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGLSHA 4134

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACP-----ENAT----------- 164
            S V  YH Q       NPC +  C  LCL+ P G  C CP     +N T           
Sbjct: 4135 SDVVLYH-QHKQPEVTNPCDRKKCEWLCLLSPSGPVCTCPNGKRLDNGTCVPVPSPTPPP 4193

Query: 165  -PKLPGVAEIRC---SAAVERPRPLPRV-CQ----------------CQNGGMCAESETG 203
                PG   ++C    +     R  P+  CQ                C NGG CA S +G
Sbjct: 4194 DAPRPGTCTLQCFNGGSCFLNARRQPKCRCQPRYTGDKCELDQCWEYCHNGGTCAASPSG 4253

Query: 204  DLTCNCRQDFAGTFC 218
              TC C   F G  C
Sbjct: 4254 MPTCRCPTGFTGPKC 4268

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 117/258 (45%), Gaps = 29/258 (11%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            M+W   G    IE A MDG+ RR LV   ++ PTGL+VD      +YW D +L+ I SV 
Sbjct: 4041 MYWTVVGDHSHIEEAAMDGTLRRILVQKNLQRPTGLAVDY-FSERIYWADFELSIIGSVL 4099

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +DG N    +S    L HP  +D+FE+ IY      G +++  KFG G    ++ ++   
Sbjct: 4100 YDGSNSVVSVSSKQGLLHPHRIDIFEDYIYGAGPKNG-VFRVQKFGHGSVEYLALNIDKT 4158

Query: 121  SGVKAYHAQRYNT-SAPNPCSQSPCSHLCLVIPGGYQCACPE-----NATPKLPGVAEIR 174
             GV   H  RY     PNPC    C  LCL+ P G  C CPE     N T     + +  
Sbjct: 4159 KGVLISH--RYKQLDLPNPCLDLACEFLCLLNPSGATCVCPEGKYLINGTCNDDSLLDDS 4216

Query: 175  CSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE-----NYTGIGQGLT 229
            C               C+NGG C  +E GDL C+C   ++G  CE     NY     G T
Sbjct: 4217 CKLT------------CENGGRCILNEKGDLRCHCWPSYSGERCEVNHCSNY--CQNGGT 4262

Query: 230  LGRSLLYIPTLLLLLALV 247
               S+L  PT    L   
Sbjct: 4263 CVPSVLGRPTCSCALGFT 4280

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 118/261 (45%), Gaps = 35/261 (13%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            M+W   G    IE A MDG+ RR LV   ++ PTGL+VD      +YW D +L+ I SV 
Sbjct: 4041 MYWTVIGDHSHIEEAAMDGTLRRVLVQKNLQRPTGLTVDH-FGERIYWADFELSIIGSVL 4099

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +DG +    +S    L HP  +DVFE+ IY      G +++  KFG G   +++  +   
Sbjct: 4100 YDGSSPVVSVSSKQGLLHPHRIDVFEDYIYGAGPKNG-IFRVQKFGHGSVEVLALGVDKT 4158

Query: 121  SGVKAYHAQRYNT-SAPNPCSQSPCSHLCLVIPGGYQCACPE-----NATPKLPGVAEIR 174
              +   H  RY   + PNPC    C  LCL+ P G  C CPE     N T     + +  
Sbjct: 4159 KSILVSH--RYKQLNLPNPCLDLSCDFLCLLNPSGATCICPEGKYMMNGTCHDDSLLDDS 4216

Query: 175  CSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE-----NYTGIGQGL- 228
            C               C+NGG C  +E GDL C+C   ++G  CE     NY   G    
Sbjct: 4217 CKLT------------CENGGRCILNEKGDLRCHCWPSYSGGRCEVNHCSNYCQNGGTCI 4264

Query: 229  --TLGRSLLYIPTLLLLLALV 247
              TLGR     PT +  L   
Sbjct: 4265 PSTLGR-----PTCICALGFT 4280

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 10/165 (6%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ T +  P GL++D   +  LYW D+KLN I    
Sbjct: 152 MYWTDWGEVPKIERAGMDGSSRFVIINTEIYWPNGLTLDY-QERKLYWADAKLNFIHKSN 210

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
            DG NRQ ++ GS  L HP +L +FE+ +YW   +T S+   +K+ G G+   I  ++ +
Sbjct: 211 LDGTNRQAVVKGS--LPHPFALTLFEDTLYWTDWNTHSILACNKYTGEGLRE-IHSNIFS 267

Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
           P  + A+  QR   +A NPC      CSHLCL+ P    YQCACP
Sbjct: 268 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 311

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
242019639	4568	low-density lipoprotein receptor, putati	0.700	0.065	0.535	1e-91
198471567	4543	GA11430 [Drosophila pseudoobscura pseudo	0.731	0.068	0.484	4e-89
195393330	4631	GJ18862 [Drosophila virilis] gi|19414981	0.682	0.063	0.518	4e-89
195164031	3916	GL16506 [Drosophila persimilis] gi|19410	0.731	0.079	0.484	5e-89
195049411	4576	GH24913 [Drosophila grimshawi] gi|193893	0.684	0.064	0.513	1e-88
195132161	4555	GI15973 [Drosophila mojavensis] gi|19390	0.684	0.064	0.509	1e-88
328709384	4640	PREDICTED: low-density lipoprotein recep	0.684	0.063	0.563	1e-88
194769742	4648	GF21799 [Drosophila ananassae] gi|190622	0.686	0.063	0.498	9e-88
195350484	2360	GM11366 [Drosophila sechellia] gi|194123	0.686	0.124	0.501	1e-87
281360654	4769	megalin, isoform A [Drosophila melanogas	0.686	0.061	0.501	1e-87

>gi|242019639|ref|XP_002430267.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212515374|gb|EEB17529.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 224/308 (72%), Gaps = 8/308 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            MFWA++G SP+IES+W+DGS R ++   GV HPTGL++D +MD+ +YW D+KLNTIES+ 
Sbjct: 4170 MFWADSGYSPKIESSWLDGSMRTTIATDGVGHPTGLAIDFSMDNKIYWADTKLNTIESMN 4229

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +DG  RQ I+ G D L+HP+SLDVFE++++W+ RDTG + KQDKFGRG PV+++KDL+NP
Sbjct: 4230 YDGSGRQVIIKG-DYLKHPVSLDVFESSVFWVTRDTGEVVKQDKFGRGDPVVVAKDLLNP 4288

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE 180
            S VK YH  RYNT+  NPC  +PCSHLCL++P G++CACP+NA P   G +E++C AA E
Sbjct: 4289 SDVKVYHKARYNTTISNPCHSNPCSHLCLLVPNGHRCACPDNANPLSKGQSEVQCDAASE 4348

Query: 181  RPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLT---LGRSLLYI 237
            R RP P++C CQN G+C ES++G+L C C QDF G +C+NY G+ +  T      ++L  
Sbjct: 4349 RARPDPKICLCQNDGICRESDSGELICECPQDFQGRYCDNYVGVSRSSTSNSTAATVLIP 4408

Query: 238  PTLLLLLALVSATVYYVWRKRPFGKTMGSALST--QSVSFRQGTNVEFGAPAF--NNGAS 293
              +LLLL  + A ++++ RKRPFGK  G    T  QSVSFRQGTNVEFG+P F  N  A 
Sbjct: 4409 ILVLLLLTAIGAAIFFIIRKRPFGKGGGLGGLTNSQSVSFRQGTNVEFGSPVFPSNGPAV 4468

Query: 294  LGLTIVYS 301
              L + Y+
Sbjct: 4469 EPLDVAYN 4476

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471567|ref|XP_001355664.2| GA11430 [Drosophila pseudoobscura pseudoobscura] gi|198145975|gb|EAL32723.2| GA11430 [Drosophila pseudoobscura pseudoobscura]

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 156/322 (48%), Positives = 220/322 (68%), Gaps = 9/322 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++W++ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct: 4125 IYWSDAGSAPKIEVSWMDGSKRRPLITEQIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 4184

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ ++LVNP
Sbjct: 4185 ADGSMRKAIVKG-DQLRHPVSLDLFESNMFWVTRDTGELLRQDKFGRGVQVVLHRNLVNP 4243

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLP---GVAEIRCSA 177
            SG+K YH +RYNTS PNPC  S CSHLCL++PGG +CACP+ + P LP     AE+ C A
Sbjct: 4244 SGLKVYHDRRYNTSLPNPCDNSTCSHLCLLVPGGRRCACPDTSGP-LPSHRSTAEVICDA 4302

Query: 178  AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLL 235
            A E PRP PR+C CQNGG+C E++ G+L C C  +F G  CE  T    G G     +++
Sbjct: 4303 AAEHPRPAPRICPCQNGGLCKENDQGELVCECLAEFRGEHCEKSTTGAFGHGGANVTAVV 4362

Query: 236  YIPTLLLLLALVSATVYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGAS 293
                ++LL+ + +A  +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++
Sbjct: 4363 VPIMVILLVMMAAAGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFSESGFPGASA 4422

Query: 294  LGLTIVYSNGPEIRAYETHKRR 315
             G  +    G  ++    +K R
Sbjct: 4423 PGADVAPIEGYNLQTVNANKAR 4444

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195393330|ref|XP_002055307.1| GJ18862 [Drosophila virilis] gi|194149817|gb|EDW65508.1| GJ18862 [Drosophila virilis]

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 157/303 (51%), Positives = 216/303 (71%), Gaps = 11/303 (3%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++WA+ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct: 4217 IYWADAGSAPKIEVSWMDGSKRRPLITEQIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 4276

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N+YW+ RDTG L +QDKFGRGV V++ ++LVNP
Sbjct: 4277 ADGSRRKAIVKG-DQLRHPVSLDLFESNMYWVTRDTGELLRQDKFGRGVQVVVHRNLVNP 4335

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLP---GVAEIRCSA 177
            SG+K YH +RYNTS  NPC +S CSHLCL++PGG++CACP+ + P LP     AE+ C A
Sbjct: 4336 SGLKVYHEKRYNTSLRNPCFESSCSHLCLLVPGGHRCACPDTSGP-LPSHRSTAEVICDA 4394

Query: 178  AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLL 235
            A ERPRP PR+C CQNGG+C E + G+L C C  DF G  CE  T    G G     + +
Sbjct: 4395 AAERPRPAPRICPCQNGGLCREDDRGELYCECLPDFKGEHCERSTTGAFGHG-GANVTAV 4453

Query: 236  YIPTLLLLLALVSAT-VYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGA 292
             +P +++LL +++A   +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   +
Sbjct: 4454 VVPIMVILLVMMAAVGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFSESGFPGAS 4513

Query: 293  SLG 295
            + G
Sbjct: 4514 APG 4516

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195164031|ref|XP_002022852.1| GL16506 [Drosophila persimilis] gi|194104914|gb|EDW26957.1| GL16506 [Drosophila persimilis]

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 156/322 (48%), Positives = 220/322 (68%), Gaps = 9/322 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++W++ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct: 3498 IYWSDAGSAPKIEVSWMDGSKRRPLITEQIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 3557

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ ++LVNP
Sbjct: 3558 ADGSMRKAIVKG-DQLRHPVSLDLFESNMFWVTRDTGELLRQDKFGRGVQVVLHRNLVNP 3616

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLP---GVAEIRCSA 177
            SG+K YH +RYNTS PNPC  S CSHLCL++PGG +CACP+ + P LP     AE+ C A
Sbjct: 3617 SGLKVYHDRRYNTSLPNPCDNSTCSHLCLLVPGGRRCACPDTSGP-LPSHRSTAEVICDA 3675

Query: 178  AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLL 235
            A E PRP PR+C CQNGG+C E++ G+L C C  +F G  CE  T    G G     +++
Sbjct: 3676 AAEHPRPAPRICPCQNGGLCKENDQGELVCECLAEFRGEHCEKSTTGAFGHGGANVTAVV 3735

Query: 236  YIPTLLLLLALVSATVYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGAS 293
                ++LL+ + +A  +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++
Sbjct: 3736 VPIMVILLVMMAAAGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFSESGFPGASA 3795

Query: 294  LGLTIVYSNGPEIRAYETHKRR 315
             G  +    G  ++    +K R
Sbjct: 3796 PGADVAPIEGYNLQTVNANKAR 3817

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195049411|ref|XP_001992716.1| GH24913 [Drosophila grimshawi] gi|193893557|gb|EDV92423.1| GH24913 [Drosophila grimshawi]

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/302 (51%), Positives = 214/302 (70%), Gaps = 9/302 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++WA+ G++P+IE +WMDGS RR L+   +RHP GL++D A DH +YWVD+KLN IES+R
Sbjct: 4162 IYWADAGSAPKIEVSWMDGSKRRPLITEQIRHPAGLTIDYAQDHIIYWVDTKLNAIESMR 4221

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ ++LVNP
Sbjct: 4222 ADGSRRKAIVKG-DQLRHPVSLDLFESNMFWVTRDTGELLRQDKFGRGVQVVVHRNLVNP 4280

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLP---GVAEIRCSA 177
            SG+K YH +RYNTS  NPC +S CSHLCL++PGG++CACP+ + P LP     AE+ C A
Sbjct: 4281 SGLKVYHEKRYNTSLRNPCHESSCSHLCLLVPGGHRCACPDTSGP-LPSHRSTAEVICDA 4339

Query: 178  AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLL 235
            A ERPRP PR+C CQN G+C E + G+L C+C  DF G  CE  T    G G     +++
Sbjct: 4340 AAERPRPSPRICPCQNTGLCKEDDRGELYCDCPPDFKGDHCERSTTGAFGHGGANVTAVV 4399

Query: 236  YIPTLLLLLALVSATVYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGAS 293
                ++LL+ + +A  +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++
Sbjct: 4400 VPIMVILLVMMAAAGAWYVIRKRPFGKLARMPAITSSQSVTFRHGSNVEFSESGFPGASA 4459

Query: 294  LG 295
             G
Sbjct: 4460 PG 4461

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132161|ref|XP_002010512.1| GI15973 [Drosophila mojavensis] gi|193908962|gb|EDW07829.1| GI15973 [Drosophila mojavensis]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/302 (50%), Positives = 216/302 (71%), Gaps = 9/302 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++WA+ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLNTIES+R
Sbjct: 4141 IYWADAGSAPKIEVSWMDGSKRRPLITEQIRHPAGLTIDYSQDHIIYWVDTKLNTIESMR 4200

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R++I+ G D+L+HP++LD+FE++++W+ RDTG L +QDKFGRGV V++ ++LVNP
Sbjct: 4201 ADGSRRKSIVKG-DQLRHPVALDLFESSMFWVTRDTGELLRQDKFGRGVQVVVHRNLVNP 4259

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPEN--ATPKLPGVAEIRCSAA 178
            SG+K YH +RYNTS  NPC +S CSHLCL++PGG++CACP+   A P     AE+ C AA
Sbjct: 4260 SGLKVYHEKRYNTSLRNPCYESSCSHLCLLVPGGHRCACPDTSGALPSHRSTAEVICDAA 4319

Query: 179  VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLLY 236
             ERPRP PR+C CQNGG+C E + G+L C C  DF G  CE  T    G G     + + 
Sbjct: 4320 AERPRPAPRICPCQNGGLCKEDDRGELYCECLPDFKGDHCERSTTGAFGHG-GANVTAVV 4378

Query: 237  IPTLLLLLALVSAT-VYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGAS 293
            +P +++LL +++A   +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++
Sbjct: 4379 VPIMVILLVMMAAVGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFSESGFPGASA 4438

Query: 294  LG 295
             G
Sbjct: 4439 PG 4440

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709384|ref|XP_001944217.2| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Acyrthosiphon pisum]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/298 (56%), Positives = 217/298 (72%), Gaps = 5/298 (1%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            MFWA+ G +P+IE +WMDGS ++SLV T + +PTGL+VD AMDH+LYWVD+KLN IES++
Sbjct: 4245 MFWADVGETPKIEMSWMDGSRQKSLVTTRLHYPTGLTVDTAMDHSLYWVDTKLNVIESIK 4304

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +D +NR  ++ G + L HPISLD+FEN +YWL+R+TG L KQDKFGRGVPV I+KDLVNP
Sbjct: 4305 YDQKNRVVVIRG-EHLHHPISLDLFENQLYWLSRETGELIKQDKFGRGVPVTIAKDLVNP 4363

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE 180
            +GVK YH QRYN + PN C  + CSHLCL++P G  CACP++ T    GV+E  C AA E
Sbjct: 4364 TGVKVYHRQRYNYTMPNMCQSAGCSHLCLLVPAGVYCACPDH-THVQQGVSEKICDAAEE 4422

Query: 181  RPRPLPRVCQCQNGGMCAE-SETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPT 239
             P+P PR+C+CQNGG+C E S  G+L C C+ DF+G  C+  +   +   +  S+L IP 
Sbjct: 4423 PPKPAPRICRCQNGGICTEDSPDGELNCLCQPDFSGRVCDITSKRIRRQGIFSSMLIIPL 4482

Query: 240  LLLLLALVSATVYYVWRKRPFGK--TMGSALSTQSVSFRQGTNVEFGAPAFNNGASLG 295
              LLL LV+  ++   RKRPFGK   +GS  ++QSVSFRQGTNVEFG  AFNNG   G
Sbjct: 4483 TGLLLLLVAGAIFIFIRKRPFGKGAVLGSLTNSQSVSFRQGTNVEFGPNAFNNGPGGG 4540

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194769742|ref|XP_001966960.1| GF21799 [Drosophila ananassae] gi|190622755|gb|EDV38279.1| GF21799 [Drosophila ananassae]

 Score =  330 bits (846), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 150/301 (49%), Positives = 210/301 (69%), Gaps = 7/301 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++W++ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct: 4231 IYWSDAGSAPKIEVSWMDGSKRRPLITEQIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 4290

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ ++L+NP
Sbjct: 4291 ADGSRRKAIVKG-DQLRHPVSLDLFESNMFWMTRDTGELLRQDKFGRGVQVVLHQNLINP 4349

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENA--TPKLPGVAEIRCSAA 178
            SG+K YH +RYNTS PNPC  S CSHLCL++PGG++CACP+ +   P     AE+ C AA
Sbjct: 4350 SGLKVYHDKRYNTSLPNPCDNSTCSHLCLLVPGGHRCACPDTSGPPPSHRSTAEVICDAA 4409

Query: 179  VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLLY 236
             E PRP PR+C CQNGG+C E   G+L C C  +F G  CE  T    G G     +++ 
Sbjct: 4410 AEHPRPAPRICPCQNGGLCKEDAQGELVCECLAEFRGDHCETSTTGAFGHGGANVTAVVV 4469

Query: 237  IPTLLLLLALVSATVYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGASL 294
               ++LL+ + +A  +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++ 
Sbjct: 4470 PIMVILLVMMAAAGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFSESGFPGASAP 4529

Query: 295  G 295
            G
Sbjct: 4530 G 4530

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350484|ref|XP_002041770.1| GM11366 [Drosophila sechellia] gi|194123575|gb|EDW45618.1| GM11366 [Drosophila sechellia]

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/301 (50%), Positives = 211/301 (70%), Gaps = 7/301 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++W++ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct: 1894 IYWSDAGSAPKIEVSWMDGSKRRPLITELIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 1953

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ ++LVNP
Sbjct: 1954 ADGSRRKAIVRG-DQLRHPVSLDLFESNMFWMTRDTGELVRQDKFGRGVQVVLHRNLVNP 2012

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENA--TPKLPGVAEIRCSAA 178
            SG+K YH +RYNTS PNPC  S CSHLCL++PGG++CACP+ +   P     AE+ C+AA
Sbjct: 2013 SGLKVYHDKRYNTSLPNPCDNSTCSHLCLLVPGGHRCACPDASGPPPSHRSTAEVICNAA 2072

Query: 179  VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLLY 236
             E PRP PR+C CQNGG+C E   G+L C C  +F G  CE  T    G G     +++ 
Sbjct: 2073 AEHPRPAPRICPCQNGGLCKEDAQGELVCECLSEFRGEHCETSTTGAFGHGGANVTAVVV 2132

Query: 237  IPTLLLLLALVSATVYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGASL 294
               ++LL+ + +A  +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++ 
Sbjct: 2133 PIMVILLVMMAAAGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFNESGFPGASAP 2192

Query: 295  G 295
            G
Sbjct: 2193 G 2193

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281360654|ref|NP_001096924.2| megalin, isoform A [Drosophila melanogaster] gi|272506047|gb|ABW09371.2| megalin, isoform A [Drosophila melanogaster]

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/301 (50%), Positives = 210/301 (69%), Gaps = 7/301 (2%)

Query: 1    MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
            ++W++ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct: 4352 IYWSDAGSAPKIEVSWMDGSKRRPLITEMIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 4411

Query: 61   HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ + +VNP
Sbjct: 4412 ADGSRRKAIVRG-DQLRHPVSLDLFESNMFWMTRDTGELVRQDKFGRGVQVVLHRYIVNP 4470

Query: 121  SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENA--TPKLPGVAEIRCSAA 178
            SG+K YH +RYNTS PNPC  S CSHLCL++PGG++CACP+ +   P     AE+ C+AA
Sbjct: 4471 SGLKVYHDKRYNTSLPNPCDNSTCSHLCLLVPGGHRCACPDASGPPPSHRSTAEVICNAA 4530

Query: 179  VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRSLLY 236
             E PRP PR+C CQNGG+C E   G+L C CR  F G  CE  T    G G     +++ 
Sbjct: 4531 AEHPRPAPRICPCQNGGLCKEDAQGELLCECRTQFVGEHCETSTMGAFGHGDANVTAVVV 4590

Query: 237  IPTLLLLLALVSATVYYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGASL 294
               ++LL+ + +A  +YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++ 
Sbjct: 4591 PIMVILLVMMAAAGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFNESGFPGASAP 4650

Query: 295  G 295
            G
Sbjct: 4651 G 4651

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.733	0.065	0.468	8.1e-80
UNIPROTKB|F1NJS9	4644	LRP2 "Uncharacterized protein"	0.518	0.047	0.454	3.5e-51
UNIPROTKB|F1NCT2	4645	LRP2 "Uncharacterized protein"	0.518	0.047	0.454	3.5e-51
ZFIN|ZDB-GENE-050119-2	4673	lrp2a "low density lipoprotein	0.518	0.047	0.433	1.1e-47
MGI|MGI:95794	4660	Lrp2 "low density lipoprotein	0.689	0.063	0.353	4.9e-47
UNIPROTKB|F1PIB4	4549	LRP2 "Uncharacterized protein"	0.689	0.064	0.346	6e-47
RGD|68407	4660	Lrp2 "low density lipoprotein	0.689	0.063	0.350	1.7e-46
UNIPROTKB|P98158	4660	Lrp2 "Low-density lipoprotein	0.689	0.063	0.350	1.7e-46
UNIPROTKB|P98164	4655	LRP2 "Low-density lipoprotein	0.514	0.047	0.423	6.4e-45
UNIPROTKB|F1N6H1	4626	LRP2 "Uncharacterized protein"	0.686	0.063	0.333	7.6e-42

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 821 (294.1 bits), Expect = 8.1e-80, P = 8.1e-80
 Identities = 151/322 (46%), Positives = 205/322 (63%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             ++W++ G++P+IE +WMDGS RR L+   +RHP GL++D + DH +YWVD+KLN IES+R
Sbjct:  4352 IYWSDAGSAPKIEVSWMDGSKRRPLITEMIRHPAGLTIDYSQDHIIYWVDTKLNAIESMR 4411

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
              DG  R+ I+ G D+L+HP+SLD+FE+N++W+ RDTG L +QDKFGRGV V++ + +VNP
Sbjct:  4412 ADGSRRKAIVRG-DQLRHPVSLDLFESNMFWMTRDTGELVRQDKFGRGVQVVLHRYIVNP 4470

Query:   121 SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENA--TPKLPGVAEIRCSAA 178
             SG+K YH +RYNTS PNPC  S CSHLCL++PGG++CACP+ +   P     AE+ C+AA
Sbjct:  4471 SGLKVYHDKRYNTSLPNPCDNSTCSHLCLLVPGGHRCACPDASGPPPSHRSTAEVICNAA 4530

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT--GIGQGLTLGRXXXX 236
              E PRP PR+C CQNGG+C E   G+L C CR  F G  CE  T    G G         
Sbjct:  4531 AEHPRPAPRICPCQNGGLCKEDAQGELLCECRTQFVGEHCETSTMGAFGHGDANVTAVVV 4590

Query:   237 XXXXXXXXXXXXXXXXYVWRKRPFGKT--MGSALSTQSVSFRQGTNVEFGAPAFNNGASL 294
                             YV RKRPFGK   M +  S+QSV+FR G+NVEF    F   ++ 
Sbjct:  4591 PIMVILLVMMAAAGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFNESGFPGASAP 4650

Query:   295 GL-TIVYSNGPEIRAYETHKRR 315
             G   +    G  ++    +K R
Sbjct:  4651 GAGDVAPIEGYNLQTVNANKAR 4672

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

UNIPROTKB|F1NJS9 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 551 (199.0 bits), Expect = 3.5e-51, P = 3.5e-51
 Identities = 106/233 (45%), Positives = 144/233 (61%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             M+W + G  P+IE AWMDG  RR+LV   +  PTGLS+D   +  +YW DSK N IES+R
Sbjct:  4184 MYWTDWGRQPKIECAWMDGQQRRTLVSEDLGWPTGLSIDYLNNDRIYWSDSKENIIESMR 4243

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             HDG +R  +L G  ++  P SLDVFE ++YW+A++ G ++K+DKFG G  V +    VNP
Sbjct:  4244 HDGTDRTVVLHG--EVGSPYSLDVFEGHLYWIAKERGEVWKKDKFGNGEKVKVLT--VNP 4299

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ YH  RYN S PNPC +  CSHLCL+ PGGY CACP+  T  + G +   C AA
Sbjct:  4300 WLTQVRIYHQHRYNQSVPNPC-KDVCSHLCLLRPGGYTCACPQG-TRFVEG-SSTECDAA 4356

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLG 231
             +E P  +P  C+C  GG C   E+G   C C   + G +CE   G+ +G+  G
Sbjct:  4357 IESPPTMPPACRCMYGGTCYIDESGLPKCKCSYGYTGDYCE--IGLSKGVPPG 4407

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NCT2 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 551 (199.0 bits), Expect = 3.5e-51, P = 3.5e-51
 Identities = 106/233 (45%), Positives = 144/233 (61%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             M+W + G  P+IE AWMDG  RR+LV   +  PTGLS+D   +  +YW DSK N IES+R
Sbjct:  4184 MYWTDWGRQPKIECAWMDGQQRRTLVSEDLGWPTGLSIDYLNNDRIYWSDSKENIIESMR 4243

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             HDG +R  +L G  ++  P SLDVFE ++YW+A++ G ++K+DKFG G  V +    VNP
Sbjct:  4244 HDGTDRTVVLHG--EVGSPYSLDVFEGHLYWIAKERGEVWKKDKFGNGEKVKVLT--VNP 4299

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ YH  RYN S PNPC +  CSHLCL+ PGGY CACP+  T  + G +   C AA
Sbjct:  4300 WLTQVRIYHQHRYNQSVPNPC-KDVCSHLCLLRPGGYTCACPQG-TRFVEG-SSTECDAA 4356

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLG 231
             +E P  +P  C+C  GG C   E+G   C C   + G +CE   G+ +G+  G
Sbjct:  4357 IESPPTMPPACRCMYGGTCYIDESGLPKCKCSYGYTGDYCE--IGLSKGVPPG 4407

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)]

 Score = 518 (187.4 bits), Expect = 1.1e-47, P = 1.1e-47
 Identities = 101/233 (43%), Positives = 142/233 (60%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             MFW + G  PRIE+AWMDG  R  L+   +  PTGL++D   ++ +YW DSK N IES++
Sbjct:  4216 MFWTDWGRKPRIETAWMDGQQREVLLDEDLGWPTGLALDYLNENRIYWCDSKENIIESMK 4275

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
              DG +RQ I+SG   + HP SLDVFE ++YW  ++ G ++K+DKFG+G  V +    +NP
Sbjct:  4276 VDGSDRQIIISGD--IGHPYSLDVFEGHVYWTTKEKGEVWKKDKFGKGDKVKVLT--INP 4331

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ Y   R+N S  NPC Q  CSHLCL+ PGG+ CACP+ +T  L    + +C AA
Sbjct:  4332 WLTQVRIYQEHRHNHSVMNPC-QDACSHLCLLRPGGFTCACPQGST--LLTFNKNQCDAA 4388

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLG 231
             +E    +P  C+C NGG C   E G   C C   ++G++CE   G  +G   G
Sbjct:  4389 IEAEVSMPLACRCMNGGTCFTDEGGLPKCKCPYGYSGSYCE--MGKSRGAPAG 4439

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070293 "renal absorption" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:95794 Lrp2 "low density lipoprotein receptor-related protein 2" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 4.9e-47, P = 4.9e-47
 Identities = 109/308 (35%), Positives = 162/308 (52%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             MFW + G  P+IESAWM+G HR  L    +  P GLS+D      +YW DSK + IES++
Sbjct:  4201 MFWTDQGKQPKIESAWMNGEHRSVLASANLGWPNGLSIDYLNGDRIYWSDSKEDVIESIK 4260

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +DG +R+ I++ + K   P SLD+FE+ +YW+A++ G +++Q+KFG+G    +   +VNP
Sbjct:  4261 YDGTDRRLIINDAMK---PFSLDIFEDQLYWVAKEKGEVWRQNKFGKGNKEKLL--VVNP 4315

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ +H  RYN S  NPC Q  CSHLCL+ PGGY CACP+ +   + G + + C AA
Sbjct:  4316 WLTQVRIFHQLRYNQSVSNPCKQV-CSHLCLLRPGGYSCACPQGSD-FVTG-STVECDAA 4372

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRXXXXXX 238
              E P  +P  C+C +GG C   E     C C   ++G +CE   G+ +G+  G       
Sbjct:  4373 SELPITMPSPCRCMHGGSCYFDENDLPKCKCSSGYSGEYCE--IGLSRGIPPGTTMALLL 4430

Query:   239 XXXXXXXXXXXXXXYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI 298
                             +  R  G  + S     S+S     +       F +GA + + I
Sbjct:  4431 TFAMVIIVGALVLVGFFHYRKTGSLLPSLPKLPSLSSLAKPSENGNGVTFRSGADVNMDI 4490

Query:   299 VYSN-GPE 305
               S  GPE
Sbjct:  4491 GVSPFGPE 4498

GO:0004872 "receptor activity" evidence=ISO;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=IMP

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010165 "response to X-ray" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030492 "hemoglobin binding" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0042954 "lipoprotein transporter activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045056 "transcytosis" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046879 "hormone secretion" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO

UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 511 (184.9 bits), Expect = 6.0e-47, P = 6.0e-47
 Identities = 107/309 (34%), Positives = 163/309 (52%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             M+W + G  P+IESAWMDG HR++LV   +  PTGL++D   +  +YW D K N IE+++
Sbjct:  4170 MYWTDWGREPKIESAWMDGQHRKTLVQENLGWPTGLAIDYLNNDRIYWSDFKENNIETIK 4229

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             HDG +R+ + + +    +P SLD+FE   YW+++D G ++KQDKFG+     +   +VNP
Sbjct:  4230 HDGTDRRIVANAA---MNPYSLDIFEGQFYWISKDKGEVWKQDKFGQDEKEKML--MVNP 4284

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ +H  RY+ S PN C ++ CSHLCL+ PGGY CACP+ +T     + +  C+AA
Sbjct:  4285 WLTQVRIFHQHRYDRSVPNRC-KNVCSHLCLLRPGGYSCACPQGSTFIEGSITD--CNAA 4341

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRXXXXXX 238
             +E P  +P  C+C  GG C   E     C C   + G +CE   G+ +G+  G       
Sbjct:  4342 IESPINMPPPCRCMYGGNCYFDENDLPKCKCPSGYMGKYCE--IGLSKGVPPGTTAVAVL 4399

Query:   239 XXXXXXXXXXXXXXY-VWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLT 297
                              +  R  G  + S     S+S    ++       F +GA + + 
Sbjct:  4400 LTIILIIIVGALAALGFFHYRRTGSLLPSLPKLPSLSSLVKSSENGNGVTFRSGADVNMD 4459

Query:   298 IVYSN-GPE 305
             I  S  GPE
Sbjct:  4460 IGVSGFGPE 4468

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|68407 Lrp2 "low density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 507 (183.5 bits), Expect = 1.7e-46, P = 1.7e-46
 Identities = 108/308 (35%), Positives = 165/308 (53%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             MFW + G  P+IESAWM+G HR  LV   +  P GLS+D   D  +YW DSK + IE+++
Sbjct:  4201 MFWTDQGKQPKIESAWMNGEHRSVLVSENLGWPNGLSIDYLNDDRVYWSDSKEDVIEAIK 4260

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +DG +R+ I++ + K   P SLD+FE+ +YW+A++ G +++Q+KFG+     +   +VNP
Sbjct:  4261 YDGTDRRLIINEAMK---PFSLDIFEDKLYWVAKEKGEVWRQNKFGKENKEKVL--VVNP 4315

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ +H  RYN S  NPC Q  CSHLCL+ PGGY CACP+ +   + G + ++C AA
Sbjct:  4316 WLTQVRIFHQLRYNQSVSNPCKQV-CSHLCLLRPGGYSCACPQGSD-FVTG-STVQCDAA 4372

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRXXXXXX 238
              E P  +P  C+C +GG C   E     C C   ++G +CE   G+ +G+  G       
Sbjct:  4373 SELPVTMPPPCRCMHGGNCYFDENELPKCKCSSGYSGEYCE--VGLSRGIPPGTTMAVLL 4430

Query:   239 XXXXXXXXXXXXXXYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI 298
                            ++  R  G  + +     S+S     +       F +GA + + I
Sbjct:  4431 TFVIVIIVGALVLVGLFHYRKTGSLLPTLPKLPSLSSLAKPSENGNGVTFRSGADVNMDI 4490

Query:   299 VYSN-GPE 305
               S  GPE
Sbjct:  4491 GVSPFGPE 4498

GO:0004872 "receptor activity" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006766 "vitamin metabolic process" evidence=ISO;TAS

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA;IMP

GO:0007568 "aging" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010165 "response to X-ray" evidence=IDA

GO:0010951 "negative regulation of endopeptidase activity" evidence=IC

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030492 "hemoglobin binding" evidence=IDA

GO:0030900 "forebrain development" evidence=ISO

GO:0031100 "organ regeneration" evidence=IEP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042953 "lipoprotein transport" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0045056 "transcytosis" evidence=IMP

GO:0045177 "apical part of cell" evidence=ISO

GO:0046879 "hormone secretion" evidence=IMP

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IPI

GO:0042954 "lipoprotein transporter activity" evidence=IMP

UNIPROTKB|P98158 Lrp2 "Low-density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 507 (183.5 bits), Expect = 1.7e-46, P = 1.7e-46
 Identities = 108/308 (35%), Positives = 165/308 (53%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             MFW + G  P+IESAWM+G HR  LV   +  P GLS+D   D  +YW DSK + IE+++
Sbjct:  4201 MFWTDQGKQPKIESAWMNGEHRSVLVSENLGWPNGLSIDYLNDDRVYWSDSKEDVIEAIK 4260

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +DG +R+ I++ + K   P SLD+FE+ +YW+A++ G +++Q+KFG+     +   +VNP
Sbjct:  4261 YDGTDRRLIINEAMK---PFSLDIFEDKLYWVAKEKGEVWRQNKFGKENKEKVL--VVNP 4315

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ +H  RYN S  NPC Q  CSHLCL+ PGGY CACP+ +   + G + ++C AA
Sbjct:  4316 WLTQVRIFHQLRYNQSVSNPCKQV-CSHLCLLRPGGYSCACPQGSD-FVTG-STVQCDAA 4372

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRXXXXXX 238
              E P  +P  C+C +GG C   E     C C   ++G +CE   G+ +G+  G       
Sbjct:  4373 SELPVTMPPPCRCMHGGNCYFDENELPKCKCSSGYSGEYCE--VGLSRGIPPGTTMAVLL 4430

Query:   239 XXXXXXXXXXXXXXYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI 298
                            ++  R  G  + +     S+S     +       F +GA + + I
Sbjct:  4431 TFVIVIIVGALVLVGLFHYRKTGSLLPTLPKLPSLSSLAKPSENGNGVTFRSGADVNMDI 4490

Query:   299 VYSN-GPE 305
               S  GPE
Sbjct:  4491 GVSPFGPE 4498

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P98164 LRP2 "Low-density lipoprotein receptor-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 492 (178.3 bits), Expect = 6.4e-45, P = 6.4e-45
 Identities = 99/234 (42%), Positives = 141/234 (60%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             MFW + G  P+IESAWM+G  R  LV   +  PTGLS+D   +  +YW D K + IE+++
Sbjct:  4199 MFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDYLNNDRIYWSDFKEDVIETIK 4258

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLV-N 119
             +DG +R+ I   + +  +P SLD+FE+ +YW++++ G ++KQ+KFG+G      K LV N
Sbjct:  4259 YDGTDRRVI---AKEAMNPYSLDIFEDQLYWISKEKGEVWKQNKFGQGKK---EKTLVVN 4312

Query:   120 P--SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSA 177
             P  + V+ +H  RYN S PN C Q  CSHLCL+ PGGY CACP+ ++  + G +   C A
Sbjct:  4313 PWLTQVRIFHQLRYNKSVPNLCKQI-CSHLCLLRPGGYSCACPQGSS-FIEG-STTECDA 4369

Query:   178 AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY--TGIGQGLT 229
             A+E P  LP  C+C +GG C   ET    C C   + G +CE     GI  G T
Sbjct:  4370 AIELPINLPPPCRCMHGGNCYFDETDLPKCKCPSGYTGKYCEMAFSKGISPGTT 4423

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005764 "lysosome" evidence=TAS

GO:0006486 "protein glycosylation" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0042359 "vitamin D metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1N6H1 LRP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 463 (168.0 bits), Expect = 7.6e-42, P = 7.6e-42
 Identities = 103/309 (33%), Positives = 156/309 (50%)

Query:     1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             M+W + G +P+IESAWMDG  R+ LV   +  PTGL +D      +YW D K N +E+++
Sbjct:  4172 MYWTDWGENPKIESAWMDGQRRKVLVQEDLGWPTGLCIDYMNGDRIYWSDLKDNIVETIK 4231

Query:    61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             +DG +R+ +++ +    +P SLD+FE+ +YW ++D G ++ QDKFGR     +    VNP
Sbjct:  4232 YDGTDRRIVVTSA---VNPYSLDIFESQLYWTSKDKGEVWIQDKFGRNKKEKLLT--VNP 4286

Query:   121 --SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
               + V+ +H ++YN S PN C +  CSHLCL+ P GY CACP+ +   L G   + C AA
Sbjct:  4287 WLTQVRVFHQRKYNHSVPNRC-KDVCSHLCLLRPKGYTCACPQGSR-FLEGSVTV-CDAA 4343

Query:   179 VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRXXXXXX 238
             +     +P  C+C N G C   E     C C   + G +CE   G+ QG+  G       
Sbjct:  4344 IVGAVSMPPPCRCMNRGSCYFDENNLPKCKCSSGYVGEYCE--MGLSQGVPPGTTAASVL 4401

Query:   239 XXXXXXXXXXXXXXYVW-RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLT 297
                             +   R  G  + S     S+S  + +    G   F +G  + + 
Sbjct:  4402 LTVILIVIIAALATLGFLHYRKTGSILPSLPKLSSLSHLKSSENGNGV-TFRSGDDVNMD 4460

Query:   298 I-VYSNGPE 305
             I V   GPE
Sbjct:  4461 IGVTGFGPE 4469

GO:0031526 "brush border membrane" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	428
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	1e-06
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	4e-04
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	4e-04
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	0.001

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 23 RSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR 66
          R+L+ +G+ HP GL+VD  ++  LYW D  L+ IE    DG NR
Sbjct: 1  RTLLSSGLGHPNGLAVDW-IEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 353
           + S       L +D ++  +YW D     I  + +
Sbjct: 4   LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL 38

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 364 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 398
           + S       L +D ++  +YW D     I  + +
Sbjct: 4   LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL 38

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 1  MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVD 39
          ++W ++     I  A ++GS RR+L    ++ P G++VD
Sbjct: 3  LYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVD 41

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
KOG1214|consensus	1289		99.93
KOG1215|consensus	877		99.93
KOG1214|consensus	1289		99.91
KOG1215|consensus	877		99.89
KOG1219|consensus	4289		99.4
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.25
KOG1219|consensus	4289		99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG4289|consensus	2531		98.73
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.72
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.65
KOG4289|consensus	2531		98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.34
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	98.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.93
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.93
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.92
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.89
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.87
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.86
KOG4659|consensus	1899		97.73
PRK11028	330	6-phosphogluconolactonase; Provisional	97.57
PF12662	24	cEGF: Complement Clr-like EGF-like	97.32
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.28
PRK11028	330	6-phosphogluconolactonase; Provisional	97.12
COG3391	381	Uncharacterized conserved protein [Function unknow	97.1
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.01
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.8
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	96.72
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.69
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.66
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.58
smart00181	35	EGF Epidermal growth factor-like domain.	96.48
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	96.47
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.47
KOG1520|consensus	376		96.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.35
smart00181	35	EGF Epidermal growth factor-like domain.	96.16
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.09
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.06
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.98
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	95.98
PHA02887	126	EGF-like protein; Provisional	95.87
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	95.83
KOG1225|consensus	525		95.82
COG3391	381	Uncharacterized conserved protein [Function unknow	95.67
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.62
KOG1225|consensus	525		95.47
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	95.44
cd00053	36	EGF Epidermal growth factor domain, found in epide	95.07
KOG4659|consensus	1899		95.04
KOG1520|consensus	376		94.96
KOG1217|consensus	487		94.9
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.81
PRK04792	448	tolB translocation protein TolB; Provisional	94.72
KOG4499|consensus	310		94.69
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	94.68
PF12662	24	cEGF: Complement Clr-like EGF-like	94.01
PRK04043	419	tolB translocation protein TolB; Provisional	93.71
KOG0994|consensus	1758		93.67
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	93.54
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	93.37
KOG4499|consensus	310		93.19
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	93.14
KOG1217|consensus	487		92.99
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	92.93
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	92.76
KOG1836|consensus	1705		92.51
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.41
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.19
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	92.19
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	92.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.98
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	91.72
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	91.68
KOG3514|consensus	1591		91.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	90.71
PRK04043	419	tolB translocation protein TolB; Provisional	90.27
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.2
KOG3516|consensus	1306		90.09
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.6
smart00051	63	DSL delta serrate ligand.	88.87
KOG4260|consensus	350		88.24
PRK05137	435	tolB translocation protein TolB; Provisional	88.14
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.24
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	87.15
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	86.58
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.81
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	85.71
KOG3514|consensus	1591		85.31
PRK05137	435	tolB translocation protein TolB; Provisional	85.03
PRK04792	448	tolB translocation protein TolB; Provisional	84.91
KOG3516|consensus	1306		84.85
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	83.98
PRK04922	433	tolB translocation protein TolB; Provisional	83.06
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	82.38
PHA02887	126	EGF-like protein; Provisional	81.47
PRK04922	433	tolB translocation protein TolB; Provisional	81.14
PRK00178	430	tolB translocation protein TolB; Provisional	81.02
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	80.39

>KOG1214|consensus

Probab=99.93  E-value=2e-25  Score=225.10  Aligned_cols=126  Identities=18%  Similarity=0.336  Sum_probs=107.3

Q ss_pred             CCceeeeecCCcceeeeecCccceee------ccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe
Q psy951          293 SLGLTIVYSNGPEIRAYETHKRRFRD------VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS  366 (428)
Q Consensus       293 ~~~~~~~~s~~~~~~~~~~~~~~~~~------~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~  366 (428)
                      .++..|+|.-..+|....+...++..      +.---+-++|||||.+++||||||....+|.||.|.|   .+.+.++.
T Consensus       988 ~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n 1064 (1289)
T KOG1214|consen  988 SVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVN 1064 (1289)
T ss_pred             CCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccC---CCCceeec
Confidence            33457888888888877777666665      1233456899999999999999999999999999999   45677775


Q ss_pred             -ccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          367 -DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       367 -~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                       +|.+|+||||||+++|+||||+.+++|+++.|||+.||+|+    .+.+-.||+|++|+
T Consensus      1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf----~tdLVNPR~iv~D~ 1120 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF----YTDLVNPRAIVVDP 1120 (1289)
T ss_pred             ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE----eecccCcceEEeec
Confidence             99999999999999999999999999999999999999999    55578888888876

>KOG1215|consensus

Probab=99.93  E-value=2.9e-24  Score=236.18  Aligned_cols=361  Identities=25%  Similarity=0.413  Sum_probs=234.9

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      ||||||+. . |+    ||+.+..+....+.+|+|++||.... ++||+|...+.|+++++||+.|+             
T Consensus        13 l~wtd~~~-~-i~----dg~~~~~~~~~~~~~~ng~~id~~~~-~~y~~d~~~~~i~~~~~dg~~r~-------------   72 (877)
T KOG1215|consen   13 LFWTDWGA-N-IE----DGGERKILEKEEFEWPNGLTIDLAWQ-RIYWADAKNDLIESANYDGSGRR-------------   72 (877)
T ss_pred             EEEecCCc-c-cc----cCcceEEeeccceeCCCcceecchhh-eeeeccccCCceEEeccCCccce-------------
Confidence            79999999 5 88    88888888888999999999999999 99999999999999999999987             


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCC---CCCCccccCCC--cc
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQS---PCSHLCLVIPG--GY  155 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~---~C~~~C~~~~~--~~  155 (428)
                      +|++|++.+||+|   ..|..+++..+.....+......|+.+.+++...++. ..++|...   +|++.|.....  .+
T Consensus        73 ~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~~~  148 (877)
T KOG1215|consen   73 ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPL-APDPCAESGNGPCSHCCLDKFSCRTG  148 (877)
T ss_pred             eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCC-CCCcccccCCCCCccccCCCCCCcCc
Confidence            7899999999999   7788888886655555555444499999998888876 67788764   77877776663  33


Q ss_pred             eecCCCCCCCCCCCCCCcccccCccC------------------------------------------------------
Q psy951          156 QCACPENATPKLPGVAEIRCSAAVER------------------------------------------------------  181 (428)
Q Consensus       156 ~C~C~~g~~~~~~~~~g~~C~~~~~~------------------------------------------------------  181 (428)
                      .|.|+++. .+.++  ...|.+....                                                      
T Consensus       149 ~~~Cip~~-~~cd~--~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~c  225 (877)
T KOG1215|consen  149 SCKCIPGD-WLCDG--EADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDSRIEVTRC  225 (877)
T ss_pred             cccCCCCc-eeCCC--CCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCcceeEEEe
Confidence            78888877 43332  1222211100                                                      


Q ss_pred             ------------C------CCCCC--------------CCCCCCCCEEeeCC---CCc----------------------
Q psy951          182 ------------P------RPLPR--------------VCQCQNGGMCAESE---TGD----------------------  204 (428)
Q Consensus       182 ------------~------~~~~~--------------~c~C~ngg~C~~~~---~g~----------------------  204 (428)
                                  |      ...+.              .+.|.++ .|....   .|.                      
T Consensus       226 ~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~g~~d~pdg~de~~~~~~~~~~~~~  304 (877)
T KOG1215|consen  226 DGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG-DCSDRQKLCDGDLDCPDGLDEDYCKKKLYWSMNV  304 (877)
T ss_pred             cCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC-CCccceEEecCccCCCCcccccccccceeeeeec
Confidence                        0      00000              0011110 010000   000                      


Q ss_pred             -----------------------------------------eEecCCCCCccCccCCCCCCCCCCCchhhHHHHHHHHHH
Q psy951          205 -----------------------------------------LTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLL  243 (428)
Q Consensus       205 -----------------------------------------~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~~~i~~~~  243 (428)
                                                               ..|.|..++............-....+ .-         
T Consensus       305 d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~C---------  374 (877)
T KOG1215|consen  305 DGSGRRILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGARTDSNPCESDNG-GC---------  374 (877)
T ss_pred             ccCCceeeecccCccccccccccchhhcccccCCCCccccCCcccCCccceecccccccCCcccccCC-cc---------
Confidence                                                     111111111100000000000000011 00         


Q ss_pred             HHHHHHHhhheee-cCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCccceeecccc
Q psy951          244 LALVSATVYYVWR-KRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISD  322 (428)
Q Consensus       244 ~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  322 (428)
                            --+.... ...++=     .-..+.+.+.. .       ..+-......+.+++..+++.+.+...++...+++
T Consensus       375 ------sq~C~~~~p~~~~c-----~c~~g~~~~~~-~-------c~~~~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~  435 (877)
T KOG1215|consen  375 ------SQLCVPNSPGTFKC-----ACSPGYELRLD-K-------CEASDQPEAFLLFSNRHDIRRISLDCSDVSRPLEG  435 (877)
T ss_pred             ------ceeccCCCCCceeE-----ecCCCcEeccC-C-------ceecCCCCcEEEEecCccceecccCCCcceEEccC
Confidence                  0000000 000000     00000000000 0       00111122457779999999999988877777787


Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcc
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ  402 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~  402 (428)
                      ..++.++++|+.++.+||+|....+|.++.++|.  ....+.-.++..|.|||+||+++++||+|.+...|++..++|+.
T Consensus       436 ~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~--~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~  513 (877)
T KOG1215|consen  436 IKNAVALDFDVLNNRIYWADLSDEKICRASQDGS--SECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS  513 (877)
T ss_pred             CccceEEEEEecCCEEEEEeccCCeEeeeccCCC--ccceEeccCccccCcEEEEeccCCceecccCCceeEEEEccCCc
Confidence            8999999999999999999999999999999994  33333335999999999999999999999999999999999999


Q ss_pred             eeEEEecccCCCCCCCcccccc
Q psy951          403 KGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       403 ~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      |++|+...    .+.|++++++
T Consensus       514 ~~vl~~~~----l~~~r~~~v~  531 (877)
T KOG1215|consen  514 RKVLVSKD----LDLPRSIAVD  531 (877)
T ss_pred             eeEEEecC----CCCccceeec
Confidence            99999555    5788888876

>KOG1214|consensus

Probab=99.91  E-value=2.9e-24  Score=216.77  Aligned_cols=157  Identities=29%  Similarity=0.589  Sum_probs=138.5

Q ss_pred             CEEEeeCC-CCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccce
Q psy951            1 MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHP   79 (428)
Q Consensus         1 lyWtd~~~-~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p   79 (428)
                      ||||||.. +|+|++++|||++|++++.+++..|+||++|+.++ .|.|+|+++++.+.+..||..|+++.++   |.+|
T Consensus      1125 LYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~-~LCWvDAGt~rleC~~p~g~gRR~i~~~---LqYP 1200 (1289)
T KOG1214|consen 1125 LYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSK-LLCWVDAGTKRLECTLPDGTGRRVIQNN---LQYP 1200 (1289)
T ss_pred             eeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccc-eeeEEecCCcceeEecCCCCcchhhhhc---ccCc
Confidence            79999985 79999999999999999999999999999999999 9999999999999999999999999996   9999


Q ss_pred             eeeeccccEEEEEeCCCCceeeeccCCCCceeee-ccCCCCCcccccccccccCCCCCCCCCC--CCCCCccccCCCcce
Q psy951           80 ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLI-SKDLVNPSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIPGGYQ  156 (428)
Q Consensus        80 ~~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~I~v~~~~~~~~~~~n~C~~--~~C~~~C~~~~~~~~  156 (428)
                      |+|.-+++++|||||...+|.+.++.++..+... ...-....||+...  .|+....++|..  ++|+|+|++.-++..
T Consensus      1201 F~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~--~~Cp~gstpCSedNGGCqHLCLpgqngav 1278 (1289)
T KOG1214|consen 1201 FSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVY--PYCPTGSTPCSEDNGGCQHLCLPGQNGAV 1278 (1289)
T ss_pred             eeeeeccccceeeccccCceEEeeccccccccccccccccceEEEEecc--ccCCCCCCcccccCCcceeecccCcCCcc
Confidence            9999999999999999999999999976655433 33445577777653  356668899985  489999999889999


Q ss_pred             ecCCCCC
Q psy951          157 CACPENA  163 (428)
Q Consensus       157 C~C~~g~  163 (428)
                      |.||...
T Consensus      1279 cecpdnv 1285 (1289)
T KOG1214|consen 1279 CECPDNV 1285 (1289)
T ss_pred             ccCCccc
Confidence            9998754

>KOG1215|consensus

Probab=99.89  E-value=5.1e-22  Score=218.44  Aligned_cols=270  Identities=32%  Similarity=0.515  Sum_probs=202.1

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCC-eEEEEEcCCCCeEEEEeCCCCccce
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLN-TIESVRHDGRNRQTILSGSDKLQHP   79 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~-~I~~~~ldG~~~~~i~~~~~~~~~p   79 (428)
                      |||+||+..++|+|+.|||+.+++++..++.+|+||++|..++ ++||+|.... .|++++++|.+|+++...  .+.+|
T Consensus       537 ~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~-~~yw~d~~~~~~i~~~~~~g~~r~~~~~~--~~~~p  613 (877)
T KOG1215|consen  537 MFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETD-RLYWADAKLDYTIESANMDGQNRRVVDSE--DLPHP  613 (877)
T ss_pred             eEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecc-eeEEEcccCCcceeeeecCCCceEEeccc--cCCCc
Confidence            7999999877999999999999999998899999999999999 9999999999 899999999999944444  69999


Q ss_pred             eeeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCC--CCCCccccCCCccee
Q psy951           80 ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQS--PCSHLCLVIPGGYQC  157 (428)
Q Consensus        80 ~~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~--~C~~~C~~~~~~~~C  157 (428)
                      ++++++++++||+||....+.+.++..+.....+......|..+..++...+...+.|+|..+  .|++.|++.|.+.+|
T Consensus       614 ~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~~~~c  693 (877)
T KOG1215|consen  614 FGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQGSTC  693 (877)
T ss_pred             eEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCCCCee
Confidence            999999999999999999888888875433235566677888888885554444589999975  899999999977799


Q ss_pred             cCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHHH
Q psy951          158 ACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYI  237 (428)
Q Consensus       158 ~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~~  237 (428)
                      .|+.|+ .+...  +..|.                                ++.+|....=+.                 
T Consensus       694 ~c~~~~-~l~~~--~~~C~--------------------------------~~~~~~~~~~~~-----------------  721 (877)
T KOG1215|consen  694 ACPEGY-RLSPD--GKSCS--------------------------------SPEGYLLITSRT-----------------  721 (877)
T ss_pred             eCCCCC-eecCC--CCeec--------------------------------Cccccccccccc-----------------
Confidence            999998 44433  23333                                222221100000                 


Q ss_pred             HHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCcccee
Q psy951          238 PTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFR  317 (428)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  317 (428)
                                                                                         .+..++.....  
T Consensus       722 -------------------------------------------------------------------~~~~~~~~~~~--  732 (877)
T KOG1215|consen  722 -------------------------------------------------------------------GIPCISLDSEL--  732 (877)
T ss_pred             -------------------------------------------------------------------ccceeecCccc--
Confidence                                                                               00000000000  


Q ss_pred             eccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEE
Q psy951          318 DVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSF  397 (428)
Q Consensus       318 ~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~  397 (428)
                          ....+...- +..++..+|++.......+...+++...  .++-.+...|.++++|+.-..|||+......|.+..
T Consensus       733 ----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  805 (877)
T KOG1215|consen  733 ----SPDQPLEDG-DTIDRLEYWTDVRVGVAAVSSQNCAPGY--DLVGEGEPPPEGSAVDEAEDTLYWTCSATSFIEVSG  805 (877)
T ss_pred             ----CCCcccCCC-cccccceecccccceeeEEEecCCCCcc--ccccccCCCCCCceeehhhcceEEEeecccEEEEEE
Confidence                000000000 8888999999988887777777775322  233358889999999999999999999999999999


Q ss_pred             ccCc
Q psy951          398 MLEA  401 (428)
Q Consensus       398 ~~g~  401 (428)
                      +++.
T Consensus       806 ~~~~  809 (877)
T KOG1215|consen  806 LDGE  809 (877)
T ss_pred             Eeee
Confidence            9995

>KOG1219|consensus

Probab=99.40  E-value=3.2e-13  Score=148.13  Aligned_cols=76  Identities=33%  Similarity=0.880  Sum_probs=69.2

Q ss_pred             CCCCCCCCCCCC--ccccCC-CcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCC
Q psy951          135 APNPCSQSPCSH--LCLVIP-GGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~-~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~  211 (428)
                      ..++|..+||+|  .|...+ +||.|.||+.|       +|+.|+...++|.++    ||++||+|+...+ .|.|.||.
T Consensus      3863 ~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqy-------sG~~CEi~~epC~sn----PC~~GgtCip~~n-~f~CnC~~ 3930 (4289)
T KOG1219|consen 3863 LTDPCNDNPCQHGGTCISQPKGGYKCKCPSQY-------SGNHCEIDLEPCASN----PCLTGGTCIPFYN-GFLCNCPN 3930 (4289)
T ss_pred             cccccccCcccCCCEecCCCCCceEEeCcccc-------cCcccccccccccCC----CCCCCCEEEecCC-CeeEeCCC
Confidence            349999999999  999999 78999999999       789999999999998    8999999999884 59999999


Q ss_pred             CCccCccCCCC
Q psy951          212 DFAGTFCENYT  222 (428)
Q Consensus       212 gy~G~~Ce~~~  222 (428)
                      ||+|.+||.+.
T Consensus      3931 gyTG~~Ce~~G 3941 (4289)
T KOG1219|consen 3931 GYTGKRCEARG 3941 (4289)
T ss_pred             CccCceeeccc
Confidence            99999998873

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.25  E-value=9.9e-12  Score=82.89  Aligned_cols=40  Identities=38%  Similarity=0.831  Sum_probs=38.3

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcC
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDA   40 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~   40 (428)
                      |||||++..++|++++|||+++++++++++.+|+|||||+
T Consensus         3 iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    3 IYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             EEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            7999999887999999999999999999999999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.25  E-value=1.5e-09  Score=102.09  Aligned_cols=99  Identities=14%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             ccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccC--CceEEEEe--c-cccceeeeeeccCCeEEEEeCCCCcE
Q psy951          319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK--GQVQAVIS--D-ERRIEALDIDPVDEIIYWVDSYDRNI  393 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~--~~~~~i~~--~-~~~p~glavD~~~~~lYwtd~~~~~I  393 (428)
                      +.+++..|-||++++..+.||++|...++|+|..++....  ...++++.  . ...|.||++|. .++||.++.+...|
T Consensus       129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I  207 (246)
T PF08450_consen  129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRI  207 (246)
T ss_dssp             EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEE
T ss_pred             EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEE
Confidence            4566788999999999999999999999999999975311  22344443  2 34699999998 56899999999999


Q ss_pred             EEEEccCcceeEEEecccCCCCCCCccccc
Q psy951          394 RRSFMLEAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       394 ~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      .+.+.+|+..+++.     -|...|.+++.
T Consensus       208 ~~~~p~G~~~~~i~-----~p~~~~t~~~f  232 (246)
T PF08450_consen  208 VVFDPDGKLLREIE-----LPVPRPTNCAF  232 (246)
T ss_dssp             EEEETTSCEEEEEE------SSSSEEEEEE
T ss_pred             EEECCCccEEEEEc-----CCCCCEEEEEE
Confidence            99999998766654     44446666665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1219|consensus

Probab=99.24  E-value=6e-12  Score=138.53  Aligned_cols=112  Identities=27%  Similarity=0.596  Sum_probs=79.0

Q ss_pred             CCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccC-ccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCcc
Q psy951          139 CSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAA-VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAG  215 (428)
Q Consensus       139 C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~-~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G  215 (428)
                      |..+||..  .|.+.+++|.|.||.||       +|.+|+.. ...|...    +|.+||.|++.+ |+|.|.|.+||.|
T Consensus      3906 C~snPC~~GgtCip~~n~f~CnC~~gy-------TG~~Ce~~Gi~eCs~n----~C~~gg~C~n~~-gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3906 CASNPCLTGGTCIPFYNGFLCNCPNGY-------TGKRCEARGISECSKN----VCGTGGQCINIP-GSFHCNCTPGILG 3973 (4289)
T ss_pred             ccCCCCCCCCEEEecCCCeeEeCCCCc-------cCceeecccccccccc----cccCCceeeccC-CceEeccChhHhc
Confidence            45667877  89999999999999999       78999876 4434333    899999999999 7899999999999


Q ss_pred             CccCCCCCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHhhheeecCCCCC
Q psy951          216 TFCENYTGIGQ-GLTL-GRSLLYIPTLLLLLALVSATVYYVWRKRPFGK  262 (428)
Q Consensus       216 ~~Ce~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~  262 (428)
                      ..|+...+... ...+ |...+++.+++++++++++++|+.+||+.++|
T Consensus      3974 r~c~~~~pni~~~~~~~gkaEli~I~V~l~~ifilvvlf~~crKk~~rk 4022 (4289)
T KOG1219|consen 3974 RTCCAEKPNILSTVLWLGKAELIIIIVLLALIFILVVLFWKCRKKNSRK 4022 (4289)
T ss_pred             ccCccccCccccccchhcccceeehhHHHHHHHHHHHHHHhhhhhccCC
Confidence            99977665431 1222 21222222233333444455777777777555

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=3.6e-09  Score=118.03  Aligned_cols=103  Identities=17%  Similarity=0.291  Sum_probs=79.6

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeC-------------CCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeE
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMT-------------GVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQ   67 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~-------------~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~   67 (428)
                      ||++|.+.. +|.+.+.+|.....+-..             .+..|.||++|..++ .||++|...++|.++++.+...+
T Consensus       582 lyVaDs~n~-rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~LYVaDt~n~~Ir~id~~~~~V~  659 (1057)
T PLN02919        582 LFISDSNHN-RIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LLYVADTENHALREIDFVNETVR  659 (1057)
T ss_pred             EEEEECCCC-eEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EEEEEeCCCceEEEEecCCCEEE
Confidence            689998877 899999998754443321             256899999998877 89999999999999999887666


Q ss_pred             EEEeCC--------------CCccceeeeecc--ccEEEEEeCCCCceeeeccC
Q psy951           68 TILSGS--------------DKLQHPISLDVF--ENNIYWLARDTGSLYKQDKF  105 (428)
Q Consensus        68 ~i~~~~--------------~~~~~p~~l~~~--~~~lYwtD~~~~~I~~~~~~  105 (428)
                      ++....              ..+.+|.+|++.  ++.||++|..++.|++.+..
T Consensus       660 tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~  713 (1057)
T PLN02919        660 TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS  713 (1057)
T ss_pred             EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC
Confidence            664310              014578777765  68999999999999888765

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.10  E-value=2.3e-10  Score=76.25  Aligned_cols=40  Identities=30%  Similarity=0.430  Sum_probs=35.4

Q ss_pred             CEEEEEecCCC-eEEEeeeccccCCceEEEEe-ccccceeeeeec
Q psy951          336 EIIYWVDSYDR-NIRRSFMLEAQKGQVQAVIS-DERRIEALDIDP  378 (428)
Q Consensus       336 ~~lyWtd~~~~-~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~  378 (428)
                      ++|||||...+ +|.++.|||+   ++++++. ++..|.||||||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence            58999999999 9999999994   4666664 999999999997

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=5.9e-08  Score=108.43  Aligned_cols=80  Identities=24%  Similarity=0.303  Sum_probs=63.4

Q ss_pred             EeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEe-CC----------CCccceeeeecc--ccEEEEE
Q psy951           26 VMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS-GS----------DKLQHPISLDVF--ENNIYWL   92 (428)
Q Consensus        26 ~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~-~~----------~~~~~p~~l~~~--~~~lYwt   92 (428)
                      +.+.+..|.|+++|..++ +||++|...++|.+.+++|.-...+.. +.          ..+.+|.+|++.  ++.||++
T Consensus       563 ~~s~l~~P~gvavd~~~g-~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa  641 (1057)
T PLN02919        563 LTSPLKFPGKLAIDLLNN-RLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA  641 (1057)
T ss_pred             ccccCCCCceEEEECCCC-eEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence            345789999999998888 899999999999999999976554443 11          125578888875  5679999


Q ss_pred             eCCCCceeeeccCC
Q psy951           93 ARDTGSLYKQDKFG  106 (428)
Q Consensus        93 D~~~~~I~~~~~~g  106 (428)
                      |..++.|.+.+..+
T Consensus       642 Dt~n~~Ir~id~~~  655 (1057)
T PLN02919        642 DTENHALREIDFVN  655 (1057)
T ss_pred             eCCCceEEEEecCC
Confidence            99998888887654

>KOG4289|consensus

Probab=98.73  E-value=6.4e-09  Score=111.69  Aligned_cols=83  Identities=31%  Similarity=0.777  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCC--ccccC---------------------C-CcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCC
Q psy951          135 APNPCSQSPCSH--LCLVI---------------------P-GGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQ  190 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~---------------------~-~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~  190 (428)
                      .-|.|...||+|  .|+..                     | ++..|.||+||       +|..|+...+.|...    +
T Consensus      1178 dDniClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGF-------Tgd~CeTeiDlCYs~----p 1246 (2531)
T KOG4289|consen 1178 DDNICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGF-------TGDYCETEIDLCYSG----P 1246 (2531)
T ss_pred             cCchhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCC-------CcccccchhHhhhcC----C
Confidence            357899999999  77543                     1 58999999999       678898877655544    8


Q ss_pred             CCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCC
Q psy951          191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLT  229 (428)
Q Consensus       191 C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~  229 (428)
                      |.|+|.|...+ |.|+|.|.+||+|.+||.......+.+
T Consensus      1247 C~nng~C~srE-ggYtCeCrpg~tGehCEvs~~agrCvp 1284 (2531)
T KOG4289|consen 1247 CGNNGRCRSRE-GGYTCECRPGFTGEHCEVSARAGRCVP 1284 (2531)
T ss_pred             CCCCCceEEec-CceeEEecCCccccceeeecccCcccc
Confidence            99999999998 569999999999999999876655444

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.72  E-value=2.5e-08  Score=66.64  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             EEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcce
Q psy951          364 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK  403 (428)
Q Consensus       364 i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~  403 (428)
                      +..+++.|+|||+||.+++|||+|.....|++++++|..+
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            3458999999999999999999999999999999999753

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.65  E-value=7.4e-08  Score=64.32  Aligned_cols=42  Identities=45%  Similarity=0.776  Sum_probs=38.3

Q ss_pred             EEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe
Q psy951           24 SLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR   66 (428)
Q Consensus        24 ~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~   66 (428)
                      +++.+++..|+|||+|+.++ +|||+|.....|+++++||+++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~-~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEG-RLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCC-EEEEEeCCCCEEEEEeCCCCCC
Confidence            45667899999999999999 9999999999999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG4289|consensus

Probab=98.53  E-value=7.7e-08  Score=103.69  Aligned_cols=85  Identities=29%  Similarity=0.702  Sum_probs=69.6

Q ss_pred             cCCCCCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEec
Q psy951          131 YNTSAPNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCN  208 (428)
Q Consensus       131 ~~~~~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~  208 (428)
                      +|+..++.|.+++|.+  .|....++|+|.|.+||       .|..|+.....-.|.+.  .|.|||+|++..+|.+.|.
T Consensus      1234 ~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~-------tGehCEvs~~agrCvpG--vC~nggtC~~~~nggf~c~ 1304 (2531)
T KOG4289|consen 1234 YCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGF-------TGEHCEVSARAGRCVPG--VCKNGGTCVNLLNGGFCCH 1304 (2531)
T ss_pred             cccchhHhhhcCCCCCCCceEEecCceeEEecCCc-------cccceeeecccCccccc--eecCCCEEeecCCCceecc
Confidence            5666788999999988  99999999999999999       68899865443222222  6889999999999999999


Q ss_pred             CCCC-CccCccCCCCCC
Q psy951          209 CRQD-FAGTFCENYTGI  224 (428)
Q Consensus       209 C~~g-y~G~~Ce~~~~~  224 (428)
                      ||.| |++.+||....+
T Consensus      1305 Cp~ge~e~prC~v~trS 1321 (2531)
T KOG4289|consen 1305 CPYGEFEDPRCEVTTRS 1321 (2531)
T ss_pred             CCCcccCCCceEEEeec
Confidence            9997 679999986544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.34  E-value=7.8e-06  Score=76.73  Aligned_cols=121  Identities=20%  Similarity=0.244  Sum_probs=87.8

Q ss_pred             CEEEeeCCC-------CeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCC-----CeEE
Q psy951            1 MFWAETGAS-------PRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGR-----NRQT   68 (428)
Q Consensus         1 lyWtd~~~~-------~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~-----~~~~   68 (428)
                      ||.||.+..       ++|.|.+.+|+- +.+ ..++..|+||++++.++ .||++|...++|.+.+++..     ++++
T Consensus        99 ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~~~-~~~~~~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~  175 (246)
T PF08450_consen   99 LYVTDSGGGGASGIDPGSVYRIDPDGKV-TVV-ADGLGFPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRV  175 (246)
T ss_dssp             EEEEEECCBCTTCGGSEEEEEEETTSEE-EEE-EEEESSEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEecCCCccccccccceEEECCCCeE-EEE-ecCcccccceEECCcch-heeecccccceeEEEeccccccceeeeee
Confidence            477776541       469999999543 333 44689999999999988 99999999999999999743     3466


Q ss_pred             EEeCCCCccceeeeecc-ccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCccccc
Q psy951           69 ILSGSDKLQHPISLDVF-ENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKA  125 (428)
Q Consensus        69 i~~~~~~~~~p~~l~~~-~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v  125 (428)
                      +.........|-++++. +++||.+++..++|.+.+.+|. ....+......|+.++.
T Consensus       176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~-~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK-LLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC-EEEEEE-SSSSEEEEEE
T ss_pred             EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc-EEEEEcCCCCCEEEEEE
Confidence            65543233468888876 7899999999999999999954 34444444556666665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=98.12  E-value=5.1e-06  Score=67.09  Aligned_cols=33  Identities=21%  Similarity=0.686  Sum_probs=26.8

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCCCCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      .|.|| .|.... -..+.|.|+.||+|.+||....
T Consensus        52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~dL   85 (139)
T PHA03099         52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHVVL   85 (139)
T ss_pred             EeECC-EEEeeccCCCceeECCCCcccccccceee
Confidence            58886 897655 2569999999999999998663

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.0029  Score=61.24  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeec---cccCCceEEEEe--ccccceeeeeeccCCeEEEEeC--CCCcEEE
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFML---EAQKGQVQAVIS--DERRIEALDIDPVDEIIYWVDS--YDRNIRR  395 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~---g~~~~~~~~i~~--~~~~p~glavD~~~~~lYwtd~--~~~~I~~  395 (428)
                      +..+=+|+++|.+..||++|...++|+|..++   |.-.+....+..  .-+.|.|+++|..+  .||.-.  +...|.+
T Consensus       162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~  239 (307)
T COG3386         162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVR  239 (307)
T ss_pred             EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEE
Confidence            66777999999999999999999999999998   543233223333  45899999999654  666432  3448999


Q ss_pred             EEccCcceeEEE
Q psy951          396 SFMLEAQKGQVQ  407 (428)
Q Consensus       396 ~~~~g~~~~~l~  407 (428)
                      -+.+|++.+++.
T Consensus       240 ~~pdG~l~~~i~  251 (307)
T COG3386         240 FNPDGKLLGEIK  251 (307)
T ss_pred             ECCCCcEEEEEE
Confidence            999988777664

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.93  E-value=8.2e-05  Score=57.90  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=55.3

Q ss_pred             EEeeccCCCEEEEEecCCC-----------------eEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCC
Q psy951          328 ALDIDPVDEIIYWVDSYDR-----------------NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYD  390 (428)
Q Consensus       328 ~l~~d~~~~~lyWtd~~~~-----------------~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~  390 (428)
                      ++|++..++.||+||..++                 ++.|-....   .+.+++..+|..|+|+|+.....-|..+....
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            6899999999999998654                 555655544   55677888999999999999999999999999


Q ss_pred             CcEEEEEccC
Q psy951          391 RNIRRSFMLE  400 (428)
Q Consensus       391 ~~I~~~~~~g  400 (428)
                      .+|.+-.+.|
T Consensus        79 ~Ri~rywl~G   88 (89)
T PF03088_consen   79 YRILRYWLKG   88 (89)
T ss_dssp             TEEEEEESSS
T ss_pred             ceEEEEEEeC
Confidence            9999988877

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.92  E-value=3.2e-06  Score=53.82  Aligned_cols=28  Identities=36%  Similarity=0.969  Sum_probs=23.0

Q ss_pred             CCCCCCccccCCCcceecCCCCCCCCCCC
Q psy951          141 QSPCSHLCLVIPGGYQCACPENATPKLPG  169 (428)
Q Consensus       141 ~~~C~~~C~~~~~~~~C~C~~g~~~~~~~  169 (428)
                      +++|+|+|++.+++|+|.|++|| .|.++
T Consensus         5 NGgC~h~C~~~~g~~~C~C~~Gy-~L~~D   32 (36)
T PF14670_consen    5 NGGCSHICVNTPGSYRCSCPPGY-KLAED   32 (36)
T ss_dssp             GGGSSSEEEEETTSEEEE-STTE-EE-TT
T ss_pred             CCCcCCCCccCCCceEeECCCCC-EECcC
Confidence            35899999999999999999999 77665

...

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.89  E-value=6.3e-06  Score=51.28  Aligned_cols=28  Identities=39%  Similarity=0.968  Sum_probs=25.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTF  217 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~  217 (428)
                      +|+|+|+|+....+.|.|.|++||+|++
T Consensus         5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    5 PCQNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             SSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             cCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence            7999999998886789999999999964

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.87  E-value=0.013  Score=57.82  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=72.3

Q ss_pred             ccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Eec-------cccceeeeeeccCCeEEEEeCCCC
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--ISD-------ERRIEALDIDPVDEIIYWVDSYDR  391 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~~-------~~~p~glavD~~~~~lYwtd~~~~  391 (428)
                      +.-..|+.++|+|..+++|.+...+.+|....++.. ++..+.+  ++-       ...|.+|+++..++.||.+..+.+
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~  267 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN  267 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence            455679999999999999999988898888888732 1323332  111       127999999999999999999999


Q ss_pred             cEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          392 NIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       392 ~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      .|.+-.+|....+.-....+...-..||.++++-
T Consensus       268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~  301 (345)
T PF10282_consen  268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP  301 (345)
T ss_dssp             EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T
T ss_pred             EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC
Confidence            9999999654221111223344455688888753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.86  E-value=0.032  Score=55.14  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Ee-ccccceeeeeeccCCeEEEEeCCCCcEEEEEccC
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--IS-DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE  400 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~-~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g  400 (428)
                      ..+.+|.++|..++||-++++.+.|--..+++. ++..+.+  +. .-..|.++++|..++.||.+....+.|.+-..|.
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            478899999999999999999998888888653 2334433  22 5667999999999999999999999999988764


Q ss_pred             c
Q psy951          401 A  401 (428)
Q Consensus       401 ~  401 (428)
                      .
T Consensus       324 ~  324 (345)
T PF10282_consen  324 D  324 (345)
T ss_dssp             T
T ss_pred             C
Confidence            3

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4659|consensus

Probab=97.73  E-value=0.0016  Score=71.22  Aligned_cols=92  Identities=18%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             CCeEEEEEc-CCCCcEEEEe--------CCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCc--c
Q psy951            9 SPRIESAWM-DGSHRRSLVM--------TGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKL--Q   77 (428)
Q Consensus         9 ~~~I~~a~~-DG~~~~~l~~--------~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~--~   77 (428)
                      .|+|....| ||-.|.+-..        -.+..|..||.-+...  ||.-|  -+.|.++..||.-+.++--+....  .
T Consensus       334 ~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGS--l~VGD--fNyIRRI~~dg~v~tIl~L~~t~~sh~  409 (1899)
T KOG4659|consen  334 EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGS--LIVGD--FNYIRRISQDGQVSTILTLGLTDTSHS  409 (1899)
T ss_pred             CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCc--EEEcc--chheeeecCCCceEEEEEecCCCccce
Confidence            356665555 6766654321        2477999999987654  99988  688999999999777664332122  2


Q ss_pred             ceeeeeccccEEEEEeCCCCceeeecc
Q psy951           78 HPISLDVFENNIYWLARDTGSLYKQDK  104 (428)
Q Consensus        78 ~p~~l~~~~~~lYwtD~~~~~I~~~~~  104 (428)
                      +-++++...+.||.+|.....|+|...
T Consensus       410 Yy~AvsPvdgtlyvSdp~s~qv~rv~s  436 (1899)
T KOG4659|consen  410 YYIAVSPVDGTLYVSDPLSKQVWRVSS  436 (1899)
T ss_pred             eEEEecCcCceEEecCCCcceEEEecc
Confidence            336778889999999999999998764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.57  E-value=0.091  Score=51.33  Aligned_cols=97  Identities=12%  Similarity=0.014  Sum_probs=66.6

Q ss_pred             ceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEE--eccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcc
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ  402 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~--~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~  402 (428)
                      .+.++.++|..++||=++...+.|.-..++.. ....+++-  .-...|.++++++.++.||-+..+.+.|.+-.+|...
T Consensus       229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~  307 (330)
T PRK11028        229 WAADIHITPDGRHLYACDRTASLISVFSVSED-GSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET  307 (330)
T ss_pred             cceeEEECCCCCEEEEecCCCCeEEEEEEeCC-CCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence            45679999999999999888887766666431 11122221  1234799999999999999999988899998876433


Q ss_pred             eeEEEecccCCCCCCCccccc
Q psy951          403 KGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       403 ~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      ..-...+.+.. -.-|..|++
T Consensus       308 g~l~~~~~~~~-g~~P~~~~~  327 (330)
T PRK11028        308 GLLTELGRYAV-GQGPMWVSV  327 (330)
T ss_pred             CcEEEcccccc-CCCceEEEE
Confidence            22222233334 456888887

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.32  E-value=0.00017  Score=41.29  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=19.3

Q ss_pred             cceecCCCCCCCCCCCCCCcccccCcc
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      +|+|.|++|| .+.++  +++|.+++|
T Consensus         1 sy~C~C~~Gy-~l~~d--~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGY-QLSPD--GRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCC-cCCCC--CCccccCCC
Confidence            5899999999 77664  689988764

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.28  E-value=0.00027  Score=45.73  Aligned_cols=29  Identities=41%  Similarity=1.107  Sum_probs=25.6

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc-cCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA-GTFCE  219 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~-G~~Ce  219 (428)
                      +|.++++|.+.. |.|.|.|+.||. |..|+
T Consensus        10 ~C~~~~~C~~~~-g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179       10 PCQNGGTCVNTV-GSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             CcCCCCEeECCC-CCeEeECCCCCccCCcCC
Confidence            588899999887 579999999999 98885

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.12  E-value=0.3  Score=47.63  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe---------ccccceeeeeeccCCeEEEEeCCCCcEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS---------DERRIEALDIDPVDEIIYWVDSYDRNIR  394 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~---------~~~~p~glavD~~~~~lYwtd~~~~~I~  394 (428)
                      ..|++++|+|..+++|=++...++|..-.++.. +...+.+..         +-.+|.+++++..++.||-++.+.+.|.
T Consensus       175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~  253 (330)
T PRK11028        175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS  253 (330)
T ss_pred             CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence            458899999999999999988888877777631 112222211         1124567999999999999999888999


Q ss_pred             EEEcc
Q psy951          395 RSFML  399 (428)
Q Consensus       395 ~~~~~  399 (428)
                      +.+++
T Consensus       254 v~~i~  258 (330)
T PRK11028        254 VFSVS  258 (330)
T ss_pred             EEEEe
Confidence            98874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.36  Score=48.38  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             ccccceeEEeeccCCCEEEEEecCC--CeEEEeeeccccCCceEEE---EeccccceeeeeeccCCeEEEEeCCCCcEEE
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSYD--RNIRRSFMLEAQKGQVQAV---ISDERRIEALDIDPVDEIIYWVDSYDRNIRR  395 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~~--~~I~ra~l~g~~~~~~~~i---~~~~~~p~glavD~~~~~lYwtd~~~~~I~~  395 (428)
                      .-...|.++++++...++|=++..+  .++.+.....   ......   +..+ .|.++++++.++.+|.++.....+.+
T Consensus       204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~---~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT---GNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC---ceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence            4455788999999999999999887  4666665554   222222   2356 89999999999999999999888888


Q ss_pred             EEccCcceeEEEecccCCCCCCCcccc
Q psy951          396 SFMLEAQKGQVQAGASRHQNGVPASSQ  422 (428)
Q Consensus       396 ~~~~g~~~~~l~~~~~~~~~~~p~~~~  422 (428)
                      .+.........+.. ..+....|.+++
T Consensus       280 id~~~~~v~~~~~~-~~~~~~~~~~~~  305 (381)
T COG3391         280 IDGATDRVVKTGPT-GNEALGEPVSIA  305 (381)
T ss_pred             EeCCCCceeeeecc-cccccccceecc
Confidence            87665544444322 344344444443

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.01  E-value=0.00071  Score=43.20  Aligned_cols=29  Identities=41%  Similarity=1.107  Sum_probs=25.4

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCE  219 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce  219 (428)
                      +|.+++.|.+.. +.|.|.|+.||.|..|+
T Consensus        10 ~C~~~~~C~~~~-~~~~C~C~~g~~g~~C~   38 (38)
T cd00054          10 PCQNGGTCVNTV-GSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             CcCCCCEeECCC-CCeEeECCCCCcCCcCC
Confidence            578889999887 56999999999998885

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.80  E-value=0.0015  Score=41.02  Aligned_cols=29  Identities=38%  Similarity=1.064  Sum_probs=25.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccC-ccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGT-FCE  219 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~-~Ce  219 (428)
                      +|.+++.|.+.. +.|.|.|+.||.|. .|+
T Consensus         7 ~C~~~~~C~~~~-~~~~C~C~~g~~g~~~C~   36 (36)
T cd00053           7 PCSNGGTCVNTP-GSYRCVCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCEEecCC-CCeEeECCCCCcccCCcC
Confidence            688899999887 56999999999998 764

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=96.72  E-value=0.0015  Score=42.06  Aligned_cols=28  Identities=32%  Similarity=1.014  Sum_probs=24.8

Q ss_pred             CCCCCC-CCCCC--ccccCCCcceecCCCCC
Q psy951          136 PNPCSQ-SPCSH--LCLVIPGGYQCACPENA  163 (428)
Q Consensus       136 ~n~C~~-~~C~~--~C~~~~~~~~C~C~~g~  163 (428)
                      +++|.. .+|.+  .|.+.+++|.|.|++||
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~   32 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGY   32 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCC
Confidence            477877 68987  89999999999999999

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.018  Score=55.73  Aligned_cols=96  Identities=23%  Similarity=0.319  Sum_probs=68.8

Q ss_pred             CeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcC---C--CCeEEEEeCCCCccceeeeec
Q psy951           10 PRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHD---G--RNRQTILSGSDKLQHPISLDV   84 (428)
Q Consensus        10 ~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ld---G--~~~~~i~~~~~~~~~p~~l~~   84 (428)
                      +.++|.+.+|+..+ ++..++..|+||++++.+. .||++|+..++|.+..+|   |  .+++..+.....-..|=++.+
T Consensus       143 G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v  220 (307)
T COG3386         143 GSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV  220 (307)
T ss_pred             ceEEEEcCCCCEEE-eecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence            46888888666544 4454699999999999999 999999999999999998   3  222322222114567888888


Q ss_pred             cccEEEEEe--CCCCceeeeccCCC
Q psy951           85 FENNIYWLA--RDTGSLYKQDKFGR  107 (428)
Q Consensus        85 ~~~~lYwtD--~~~~~I~~~~~~g~  107 (428)
                      ..+-.||+-  +....|.+.+.+|.
T Consensus       221 DadG~lw~~a~~~g~~v~~~~pdG~  245 (307)
T COG3386         221 DADGNLWVAAVWGGGRVVRFNPDGK  245 (307)
T ss_pred             eCCCCEEEecccCCceEEEECCCCc
Confidence            866666643  33448888888854

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.66  E-value=0.00076  Score=44.72  Aligned_cols=28  Identities=29%  Similarity=0.910  Sum_probs=24.2

Q ss_pred             CCCCCCC--CCC--CccccCCCcceecCCCCC
Q psy951          136 PNPCSQS--PCS--HLCLVIPGGYQCACPENA  163 (428)
Q Consensus       136 ~n~C~~~--~C~--~~C~~~~~~~~C~C~~g~  163 (428)
                      +|+|...  .|.  ..|+++.++|+|.|++||
T Consensus         2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy   33 (42)
T PF07645_consen    2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGY   33 (42)
T ss_dssp             SSTTTTTSSSSSTTSEEEEETTEEEEEESTTE
T ss_pred             ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCc
Confidence            5788764  687  399999999999999999

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.58  E-value=0.00084  Score=32.58  Aligned_cols=13  Identities=38%  Similarity=1.140  Sum_probs=10.9

Q ss_pred             EecCCCCCccCcc
Q psy951          206 TCNCRQDFAGTFC  218 (428)
Q Consensus       206 ~C~C~~gy~G~~C  218 (428)
                      +|.|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            5999999999987

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.48  E-value=0.0031  Score=39.70  Aligned_cols=28  Identities=39%  Similarity=1.079  Sum_probs=23.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCcc-CccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAG-TFCE  219 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G-~~Ce  219 (428)
                      +|.++ .|.+.. +.|.|.|++||.| ..|+
T Consensus         7 ~C~~~-~C~~~~-~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        7 PCSNG-TCINTP-GSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCC-EEECCC-CCeEeECCCCCccCCccC
Confidence            57788 999885 6799999999999 7774

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.47  E-value=0.00094  Score=41.43  Aligned_cols=25  Identities=48%  Similarity=1.399  Sum_probs=22.7

Q ss_pred             CCCCCCCC--ccccCC-CcceecCCCCC
Q psy951          139 CSQSPCSH--LCLVIP-GGYQCACPENA  163 (428)
Q Consensus       139 C~~~~C~~--~C~~~~-~~~~C~C~~g~  163 (428)
                      |..++|+|  +|++.. .+|.|.|++||
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~   28 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGY   28 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTE
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCC
Confidence            66778988  999999 99999999999

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.47  E-value=0.0065  Score=36.37  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=23.8

Q ss_pred             cccceeeeeeccCCeEEEEeCCCCcEEE
Q psy951          368 ERRIEALDIDPVDEIIYWVDSYDRNIRR  395 (428)
Q Consensus       368 ~~~p~glavD~~~~~lYwtd~~~~~I~~  395 (428)
                      |..|.|||+| ..++||.+|.+..+|.+
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            4689999999 88999999999988764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1520|consensus

Probab=96.44  E-value=0.0097  Score=58.07  Aligned_cols=91  Identities=23%  Similarity=0.391  Sum_probs=59.6

Q ss_pred             CCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee----eeecc-ccEEEEEeCCC---------
Q psy951           31 RHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI----SLDVF-ENNIYWLARDT---------   96 (428)
Q Consensus        31 ~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~----~l~~~-~~~lYwtD~~~---------   96 (428)
                      .+|-||+.|..++ .||.+|++.+ +..++..|...+.+....  ...|+    ++++. ++.|||||...         
T Consensus       115 GRPLGl~f~~~gg-dL~VaDAYlG-L~~V~p~g~~a~~l~~~~--~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  115 GRPLGIRFDKKGG-DLYVADAYLG-LLKVGPEGGLAELLADEA--EGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF  190 (376)
T ss_pred             CCcceEEeccCCC-eEEEEeccee-eEEECCCCCcceeccccc--cCeeeeecCceeEcCCCeEEEeccccccchhheEE
Confidence            6999999999998 8999999888 567788887766665542  33443    34433 89999999643         


Q ss_pred             --------CceeeeccCCCCceeeeccCCCCCcccccc
Q psy951           97 --------GSLYKQDKFGRGVPVLISKDLVNPSGVKAY  126 (428)
Q Consensus        97 --------~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~  126 (428)
                              |++++.++. .....++..++.-|+|+++.
T Consensus       191 a~l~g~~~GRl~~YD~~-tK~~~VLld~L~F~NGlaLS  227 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPS-TKVTKVLLDGLYFPNGLALS  227 (376)
T ss_pred             eeecCCCccceEEecCc-ccchhhhhhcccccccccCC
Confidence                    344444443 22233455555556665543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.35  E-value=0.083  Score=49.52  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=49.8

Q ss_pred             CCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceeeeeccccEEEEE-eCCCCceeeeccC
Q psy951           30 VRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWL-ARDTGSLYKQDKF  105 (428)
Q Consensus        30 ~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~~~lYwt-D~~~~~I~~~~~~  105 (428)
                      ...+.||+.|+.++ .||-+.-..+.|...+++|.-.+.+.-.  +..-|.+|++.++..|.. +-..+.|.....+
T Consensus        21 ~~e~SGLTy~pd~~-tLfaV~d~~~~i~els~~G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   21 LDELSGLTYNPDTG-TLFAVQDEPGEIYELSLDGKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -S-EEEEEEETTTT-EEEEEETTTTEEEEEETT--EEEEEE-S--S-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             cCCccccEEcCCCC-eEEEEECCCCEEEEEcCCCCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34599999999989 9999988899999999999866665433  467789999887655554 4345666665553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.16  E-value=0.0048  Score=38.81  Aligned_cols=26  Identities=42%  Similarity=1.244  Sum_probs=22.4

Q ss_pred             CCCC-CCCCC-ccccCCCcceecCCCCC
Q psy951          138 PCSQ-SPCSH-LCLVIPGGYQCACPENA  163 (428)
Q Consensus       138 ~C~~-~~C~~-~C~~~~~~~~C~C~~g~  163 (428)
                      +|.. .+|.+ .|++..++|.|.|++||
T Consensus         1 ~C~~~~~C~~~~C~~~~~~~~C~C~~g~   28 (35)
T smart00181        1 ECASGGPCSNGTCINTPGSYTCSCPPGY   28 (35)
T ss_pred             CCCCcCCCCCCEEECCCCCeEeECCCCC
Confidence            3555 57888 89999999999999999

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.09  E-value=0.0063  Score=40.28  Aligned_cols=24  Identities=29%  Similarity=1.020  Sum_probs=21.7

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~  214 (428)
                      .|..++.|++.. |+|.|.|++||.
T Consensus        11 ~C~~~~~C~N~~-Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   11 NCPENGTCVNTE-GSYSCSCPPGYE   34 (42)
T ss_dssp             SSSTTSEEEEET-TEEEEEESTTEE
T ss_pred             cCCCCCEEEcCC-CCEEeeCCCCcE
Confidence            577889999998 789999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.06  E-value=1.5  Score=42.41  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=72.1

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCc---eEEEE------eccccceeeeeeccCCeEEEEeCCCCcE
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ---VQAVI------SDERRIEALDIDPVDEIIYWVDSYDRNI  393 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~---~~~i~------~~~~~p~glavD~~~~~lYwtd~~~~~I  393 (428)
                      -..||-|+|||..++.|-+.--+.+|.-...++. ..+   .|.+.      .+-.+...|.|...++-||-.+.+.+.|
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            3468899999999999999888888888888773 122   23332      1455778899999999999999999999


Q ss_pred             EEEEccCcceeEEEecccCCCCCCCcccccccc
Q psy951          394 RRSFMLEAQKGQVQAGASRHQNGVPASSQRNLS  426 (428)
Q Consensus       394 ~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~~  426 (428)
                      .+-.+|-...+--........--.||+..+|-+
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~  301 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPS  301 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence            887766543332222232333334777666643

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.98  E-value=0.0066  Score=37.56  Aligned_cols=26  Identities=27%  Similarity=0.764  Sum_probs=22.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCcc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFC  218 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~C  218 (428)
                      .|.++|+|+...   .+|.|.+||.|..|
T Consensus         7 ~C~~~G~C~~~~---g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSPC---GRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCCC---CEEECCCCCcCCCC
Confidence            588999998663   47999999999887

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=95.98  E-value=0.048  Score=42.49  Aligned_cols=69  Identities=19%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             eeEEEcCCCCCEEEEEECC-----------------CCeEEEEEcCCCCeEEEEeCCCCccceeeee--ccccEEEEEeC
Q psy951           34 TGLSVDAAMDHTLYWVDSK-----------------LNTIESVRHDGRNRQTILSGSDKLQHPISLD--VFENNIYWLAR   94 (428)
Q Consensus        34 ~glavD~~~~~~lYW~d~~-----------------~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~--~~~~~lYwtD~   94 (428)
                      ++|+|+..++ .|||+|+.                 .+++.+.++.....++++.+   +..|-||+  ..+++|..+..
T Consensus         1 ndldv~~~~g-~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    1 NDLDVDQDTG-TVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             -EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEEEG
T ss_pred             CceeEecCCC-EEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEEec
Confidence            5789998878 89999985                 35899999998888888886   77776555  55779999998


Q ss_pred             CCCceeeeccCC
Q psy951           95 DTGSLYKQDKFG  106 (428)
Q Consensus        95 ~~~~I~~~~~~g  106 (428)
                      ...+|.|.-..|
T Consensus        77 ~~~Ri~rywl~G   88 (89)
T PF03088_consen   77 GRYRILRYWLKG   88 (89)
T ss_dssp             GGTEEEEEESSS
T ss_pred             cCceEEEEEEeC
Confidence            888888876554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PHA02887 EGF-like protein; Provisional

Probab=95.87  E-value=0.0076  Score=48.26  Aligned_cols=31  Identities=26%  Similarity=0.707  Sum_probs=24.8

Q ss_pred             CCCCCCEEeeCCC-CceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESET-GDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~-g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .|.| |+|..... ..+.|.|+.||+|.+||..
T Consensus        93 YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~v  124 (126)
T PHA02887         93 FCIN-GECMNIIDLDEKFCICNKGYTGIRCDEV  124 (126)
T ss_pred             EeeC-CEEEccccCCCceeECCCCcccCCCCcc
Confidence            4776 69976552 5689999999999999864

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=95.83  E-value=0.0092  Score=37.87  Aligned_cols=28  Identities=32%  Similarity=1.027  Sum_probs=23.5

Q ss_pred             CCCCCC-CCCCC--ccccCCCcceecCCCCC
Q psy951          136 PNPCSQ-SPCSH--LCLVIPGGYQCACPENA  163 (428)
Q Consensus       136 ~n~C~~-~~C~~--~C~~~~~~~~C~C~~g~  163 (428)
                      .++|.. .+|.+  .|.+..++|.|.|++||
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~   32 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGY   32 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCC
Confidence            467776 67864  79999999999999999

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1225|consensus

Probab=95.82  E-value=0.011  Score=60.70  Aligned_cols=27  Identities=26%  Similarity=0.853  Sum_probs=22.6

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .|.++|.|+.     -+|.|.+||+|..|+..
T Consensus       317 dC~g~G~Ci~-----G~C~C~~Gy~G~~C~~~  343 (525)
T KOG1225|consen  317 DCSGHGKCID-----GECLCDEGYTGELCIQR  343 (525)
T ss_pred             cCCCCCcccC-----CceEeCCCCcCCccccc
Confidence            5888899982     25999999999999886

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.22  Score=50.00  Aligned_cols=121  Identities=14%  Similarity=0.111  Sum_probs=82.0

Q ss_pred             CcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecC--CCeEEEeeeccccCCceEEEEeccccceeeeeeccC
Q psy951          303 GPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVD  380 (428)
Q Consensus       303 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~--~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~  380 (428)
                      ...+..++.........+.--..|.++++|+..+++|-++.+  +.++....-..   ......+.--..|.|+++|..+
T Consensus        95 ~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t---~~~~~~~~vG~~P~~~a~~p~g  171 (381)
T COG3391          95 SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT---NKVTATIPVGNTPTGVAVDPDG  171 (381)
T ss_pred             CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC---CeEEEEEecCCCcceEEECCCC
Confidence            445555565555555544334499999999999999999995  56776665543   2111122222268999999999


Q ss_pred             CeEEEEeCCCCcEEEEEccCcceeEEEecccCCCCCCCcccccccc
Q psy951          381 EIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNLS  426 (428)
Q Consensus       381 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~~  426 (428)
                      ..+|-+|...+.|.+.+..+.....-..........-|..++++..
T Consensus       172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~  217 (381)
T COG3391         172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD  217 (381)
T ss_pred             CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence            9999999999999999977665443111113455677888887654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.62  E-value=2  Score=40.30  Aligned_cols=93  Identities=5%  Similarity=-0.045  Sum_probs=64.5

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcce
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK  403 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~  403 (428)
                      ..+.++.+++..+++|.+.....+|..-.+..   .+....+..-+.|.+++++..++.||-+......|.+-++++...
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            35778999999999999876666665554432   222222232346889999999999998877667899999998776


Q ss_pred             eEEEecccCCCCCCCcccccc
Q psy951          404 GQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       404 ~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      ..-+.-    + ..|.+||+.
T Consensus       284 ~~~~~~----~-~~~~~~~~~  299 (300)
T TIGR03866       284 IKSIKV----G-RLPWGVVVR  299 (300)
T ss_pred             EEEEEc----c-cccceeEeC
Confidence            444432    2 566777764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1225|consensus

Probab=95.47  E-value=0.024  Score=58.16  Aligned_cols=68  Identities=25%  Similarity=0.581  Sum_probs=43.7

Q ss_pred             CCCCCCCCccccCC--CcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccC
Q psy951          139 CSQSPCSHLCLVIP--GGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       139 C~~~~C~~~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      |....|.+.|....  ..-+|.|++||       .|..|....       -++.|..++.|++.     +|.|++||+|.
T Consensus       247 c~~~~C~~~c~~~g~c~~G~CIC~~Gf-------~G~dC~e~~-------Cp~~cs~~g~~~~g-----~CiC~~g~~G~  307 (525)
T KOG1225|consen  247 CSTIYCPGGCTGRGQCVEGRCICPPGF-------TGDDCDELV-------CPVDCSGGGVCVDG-----ECICNPGYSGK  307 (525)
T ss_pred             cccccCCCCCcccceEeCCeEeCCCCC-------cCCCCCccc-------CCcccCCCceecCC-----EeecCCCcccc
Confidence            44445555554332  23478999999       567776421       12246666777643     69999999999


Q ss_pred             ccCCCCCCC
Q psy951          217 FCENYTGIG  225 (428)
Q Consensus       217 ~Ce~~~~~~  225 (428)
                      .|+.....+
T Consensus       308 dCs~~~cpa  316 (525)
T KOG1225|consen  308 DCSIRRCPA  316 (525)
T ss_pred             ccccccCCc
Confidence            998765443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=95.44  E-value=0.035  Score=33.13  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=22.8

Q ss_pred             CCCceeEEEcCCCCCEEEEEECCCCeEEE
Q psy951           30 VRHPTGLSVDAAMDHTLYWVDSKLNTIES   58 (428)
Q Consensus        30 ~~~P~glavD~~~~~~lYW~d~~~~~I~~   58 (428)
                      +..|.||++| .++ .||-+|....+|.+
T Consensus         1 f~~P~gvav~-~~g-~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVD-SDG-NIYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEE-TTS-EEEEEECCCTEEEE
T ss_pred             CcCCcEEEEe-CCC-CEEEEECCCCEEEE
Confidence            3589999999 567 89999999888864

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=95.07  E-value=0.021  Score=35.53  Aligned_cols=25  Identities=44%  Similarity=1.301  Sum_probs=20.5

Q ss_pred             CC-CCCCCC--ccccCCCcceecCCCCC
Q psy951          139 CS-QSPCSH--LCLVIPGGYQCACPENA  163 (428)
Q Consensus       139 C~-~~~C~~--~C~~~~~~~~C~C~~g~  163 (428)
                      |. ..+|.+  .|.+.+++|.|.|+.||
T Consensus         2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~   29 (36)
T cd00053           2 CAASNPCSNGGTCVNTPGSYRCVCPPGY   29 (36)
T ss_pred             CCCCCCCCCCCEEecCCCCeEeECCCCC
Confidence            44 456763  89988899999999999

>KOG4659|consensus

Probab=95.04  E-value=0.2  Score=55.73  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             ccccceeEEeeccCCCEEEEEecCCCeEEEeee-ccc-cCCceEEEEe---------------------ccccceeeeee
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM-LEA-QKGQVQAVIS---------------------DERRIEALDID  377 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l-~g~-~~~~~~~i~~---------------------~~~~p~glavD  377 (428)
                      .+..+---||+||+.+.||-+|-.+++|+|..- .+. ...+.++++-                     +|..|.|||+|
T Consensus       404 t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d  483 (1899)
T KOG4659|consen  404 TDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD  483 (1899)
T ss_pred             CCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc
Confidence            344455569999999999999999999998763 221 1123444431                     36799999999


Q ss_pred             ccCCeEEEEeCCCCcEEEEEccCcceeEEEecccC
Q psy951          378 PVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASR  412 (428)
Q Consensus       378 ~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~  412 (428)
                      .. ++||++|.-.  |.+.+-+|--+..+=....+
T Consensus       484 k~-g~lYfaD~t~--IR~iD~~giIstlig~~~~~  515 (1899)
T KOG4659|consen  484 KM-GNLYFADGTR--IRVIDTTGIISTLIGTTPDQ  515 (1899)
T ss_pred             cC-CcEEEecccE--EEEeccCceEEEeccCCCCc
Confidence            64 7999999874  99999888766655444444

>KOG1520|consensus

Probab=94.96  E-value=0.047  Score=53.36  Aligned_cols=75  Identities=16%  Similarity=0.325  Sum_probs=60.9

Q ss_pred             EEeeccCCCEEEEEecCCC----eEEEeeeccccC----------CceEEEEeccccceeeeeeccCCeEEEEeCCCCcE
Q psy951          328 ALDIDPVDEIIYWVDSYDR----NIRRSFMLEAQK----------GQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNI  393 (428)
Q Consensus       328 ~l~~d~~~~~lyWtd~~~~----~I~ra~l~g~~~----------~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I  393 (428)
                      ++|+|+ ++.|||||+.++    ...-+.+.|...          -..+++.+++.-|+|||+-.....+-++...+.+|
T Consensus       165 ~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri  243 (376)
T KOG1520|consen  165 DLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARI  243 (376)
T ss_pred             ceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecccee
Confidence            799999 999999999884    455555555211          12334557899999999999999999999999999


Q ss_pred             EEEEccCcce
Q psy951          394 RRSFMLEAQK  403 (428)
Q Consensus       394 ~~~~~~g~~~  403 (428)
                      .+..+.|.+-
T Consensus       244 ~rywi~g~k~  253 (376)
T KOG1520|consen  244 KRYWIKGPKA  253 (376)
T ss_pred             eeeEecCCcc
Confidence            9999999876

>KOG1217|consensus

Probab=94.90  E-value=0.041  Score=56.22  Aligned_cols=80  Identities=29%  Similarity=0.765  Sum_probs=54.8

Q ss_pred             CCCCCCCCC-CCC--ccccCCCcceecCCCCCCCCCCCCCCccc---ccCccCCCCCCCCCCCCCCCEEe-eCCCCceEe
Q psy951          135 APNPCSQSP-CSH--LCLVIPGGYQCACPENATPKLPGVAEIRC---SAAVERPRPLPRVCQCQNGGMCA-ESETGDLTC  207 (428)
Q Consensus       135 ~~n~C~~~~-C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C---~~~~~~~~~~~~~c~C~ngg~C~-~~~~g~~~C  207 (428)
                      ..+.|.... |.+  .|++.++.|.|.|++||       .+..|   .+. ..|......-.|.+++.|. ....+.+.|
T Consensus       270 ~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~-------~g~~~~~~~~~-~~C~~~~~~~~c~~g~~C~~~~~~~~~~C  341 (487)
T KOG1217|consen  270 DVDSCALIASCPNGGTCVNVPGSYRCTCPPGF-------TGRLCTECVDV-DECSPRNAGGPCANGGTCNTLGSFGGFRC  341 (487)
T ss_pred             eccccCCCCccCCCCeeecCCCcceeeCCCCC-------CCCCCcccccc-ccccccccCCcCCCCcccccCCCCCCCCc
Confidence            457787753 776  99999988999999999       44555   111 1121111222588999993 222346889


Q ss_pred             cCCCCCccCccCCCC
Q psy951          208 NCRQDFAGTFCENYT  222 (428)
Q Consensus       208 ~C~~gy~G~~Ce~~~  222 (428)
                      .|..+|.|..|+...
T Consensus       342 ~c~~~~~g~~C~~~~  356 (487)
T KOG1217|consen  342 ACGPGFTGRRCEDSN  356 (487)
T ss_pred             CCCCCCCCCccccCC
Confidence            999999999998763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.81  E-value=0.16  Score=50.73  Aligned_cols=66  Identities=15%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             cceeEEeeccCCCEEEEEecCC-------------------CeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYD-------------------RNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIY  384 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~-------------------~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lY  384 (428)
                      ..+.+++++| +++||+++...                   ..|+|...+|   +..+++..++.+|.||++|. .++||
T Consensus       124 ~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G~rnp~Gl~~d~-~G~l~  198 (367)
T TIGR02604       124 HSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHGFQNPYGHSVDS-WGDVF  198 (367)
T ss_pred             ccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEecCcCCCccceECC-CCCEE
Confidence            3477899998 57999987621                   3688988888   45666667999999999998 57899


Q ss_pred             EEeCCCCcEE
Q psy951          385 WVDSYDRNIR  394 (428)
Q Consensus       385 wtd~~~~~I~  394 (428)
                      .+|.......
T Consensus       199 ~tdn~~~~~~  208 (367)
T TIGR02604       199 FCDNDDPPLC  208 (367)
T ss_pred             EEccCCCcee
Confidence            9998544333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.72  E-value=5.8  Score=40.66  Aligned_cols=93  Identities=13%  Similarity=0.045  Sum_probs=58.9

Q ss_pred             CeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECC--CCeEEEEEcCCCCeEEEEeCCCCccceeeeecccc
Q psy951           10 PRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSK--LNTIESVRHDGRNRQTILSGSDKLQHPISLDVFEN   87 (428)
Q Consensus        10 ~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~--~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~~   87 (428)
                      .+|..++.||.+.+.+.... ..-...+..+.++ +|+|+...  ...|+..++++...+.+.... ........+..++
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~-~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~  274 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSP-EPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGK  274 (448)
T ss_pred             eEEEEEeCCCCCceEeecCC-CcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCC
Confidence            46888899999887765532 2233567777777 89998543  457999999987766665432 2223345566677


Q ss_pred             EEEEEeCCCC--ceeeeccC
Q psy951           88 NIYWLARDTG--SLYKQDKF  105 (428)
Q Consensus        88 ~lYwtD~~~~--~I~~~~~~  105 (428)
                      +|+++....+  .|+..+..
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECC
Confidence            7887643322  35555544

>KOG4499|consensus

Probab=94.69  E-value=0.35  Score=44.32  Aligned_cols=96  Identities=21%  Similarity=0.328  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCC-----CCeEEEEeCCC----Cccceeee
Q psy951           12 IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDG-----RNRQTILSGSD----KLQHPISL   82 (428)
Q Consensus        12 I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG-----~~~~~i~~~~~----~~~~p~~l   82 (428)
                      -.++++-|-+...+ ...+.-|+||+-|.... ..|++|+..-.|..-+.|-     ++|++++.-..    .-..|=++
T Consensus       140 ~Ly~~~~~h~v~~i-~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm  217 (310)
T KOG4499|consen  140 ELYSWLAGHQVELI-WNCVGISNGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGM  217 (310)
T ss_pred             EEEEeccCCCceee-ehhccCCccccccccCc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcc
Confidence            34555655555544 44788999999997777 8999999888997777542     67888876431    23334455


Q ss_pred             ecc-ccEEEEEeCCCCceeeeccCCCCc
Q psy951           83 DVF-ENNIYWLARDTGSLYKQDKFGRGV  109 (428)
Q Consensus        83 ~~~-~~~lYwtD~~~~~I~~~~~~g~~~  109 (428)
                      ++. +++||.+-|++++|.+.+...+..
T Consensus       218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  218 TIDTEGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             eEccCCcEEEEEecCcEEEEECCCCCcE
Confidence            554 889999999999999999875544

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=94.68  E-value=0.022  Score=36.24  Aligned_cols=26  Identities=27%  Similarity=0.925  Sum_probs=19.4

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      .|....+|.+.. ++|.|.|++||.|+
T Consensus         7 ~C~~nA~C~~~~-~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTG-GSYTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-T-TSEEEEE-CEEECC
T ss_pred             CCCCCcEeecCC-CCEEeECCCCCccC
Confidence            466678999998 48999999999975

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=94.01  E-value=0.036  Score=31.78  Aligned_cols=17  Identities=35%  Similarity=1.013  Sum_probs=13.6

Q ss_pred             ceEecCCCCCc----cCccCC
Q psy951          204 DLTCNCRQDFA----GTFCEN  220 (428)
Q Consensus       204 ~~~C~C~~gy~----G~~Ce~  220 (428)
                      +|+|.|++||.    |..|+.
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcccc
Confidence            48999999998    556764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.71  E-value=9  Score=38.95  Aligned_cols=93  Identities=12%  Similarity=0.024  Sum_probs=58.3

Q ss_pred             CCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCE-EEEEECC--CCeEEEEEcCCCCeEEEEeCCCCccceeeeecc
Q psy951            9 SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHT-LYWVDSK--LNTIESVRHDGRNRQTILSGSDKLQHPISLDVF   85 (428)
Q Consensus         9 ~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~-lYW~d~~--~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~   85 (428)
                      ..+|..++.||.+.+++...+  .-..-...+..+ + +|.+...  ...|+..++.+..++.+.... +.......+..
T Consensus       168 ~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~-~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPD  243 (419)
T PRK04043        168 KSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQ-TAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKD  243 (419)
T ss_pred             cceEEEECCCCCceeEEccCC--CeEeEEECCCCC-cEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCC
Confidence            458999999999988876643  112334455555 5 7765443  468999999888777776542 33333445666


Q ss_pred             ccEEEEEeCCC--CceeeeccC
Q psy951           86 ENNIYWLARDT--GSLYKQDKF  105 (428)
Q Consensus        86 ~~~lYwtD~~~--~~I~~~~~~  105 (428)
                      +.+|.++....  ..|+..+..
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECC
Confidence            77787775332  244444444

>KOG0994|consensus

Probab=93.67  E-value=0.12  Score=56.61  Aligned_cols=68  Identities=22%  Similarity=0.485  Sum_probs=44.3

Q ss_pred             cccCCCccee-cCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCC--------EEeeCCC-CceEecCCCCCccCc
Q psy951          148 CLVIPGGYQC-ACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG--------MCAESET-GDLTCNCRQDFAGTF  217 (428)
Q Consensus       148 C~~~~~~~~C-~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg--------~C~~~~~-g~~~C~C~~gy~G~~  217 (428)
                      |.+..+|+.| .|..|| ...|-          ......+.||+|..|-        .|...+. ....|.|.+||+|.+
T Consensus       878 CqD~T~G~~CdrCl~Gy-yGdP~----------lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~R  946 (1758)
T KOG0994|consen  878 CQDSTTGHSCDRCLDGY-YGDPR----------LGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSR  946 (1758)
T ss_pred             ccccccccchhhhhccc-cCCcc----------cCCCCCCCCCCCCCCCccchhccccccccccccceeeecccCccccc
Confidence            4444567888 488888 33221          1122234578887663        5876652 458899999999999


Q ss_pred             cCCCCCCCC
Q psy951          218 CENYTGIGQ  226 (428)
Q Consensus       218 Ce~~~~~~~  226 (428)
                      |+.-....+
T Consensus       947 Ce~CA~~~f  955 (1758)
T KOG0994|consen  947 CEICADNHF  955 (1758)
T ss_pred             hhhhccccc
Confidence            998665543

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=93.54  E-value=0.16  Score=40.34  Aligned_cols=34  Identities=21%  Similarity=0.677  Sum_probs=25.3

Q ss_pred             CCCCCCEEeeCCC----CceEecCCC-------------CCccCccCCCCC
Q psy951          190 QCQNGGMCAESET----GDLTCNCRQ-------------DFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~~~~----g~~~C~C~~-------------gy~G~~Ce~~~~  223 (428)
                      .|..+|.|+....    .=|.|.|.+             .|.|..|+...-
T Consensus        14 ~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDv   64 (103)
T PF12955_consen   14 NCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDV   64 (103)
T ss_pred             CCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccc
Confidence            5888999987742    339999998             466888887553

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=93.37  E-value=0.26  Score=38.16  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             ceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEE
Q psy951          360 QVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSF  397 (428)
Q Consensus       360 ~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~  397 (428)
                      +.+++++++..|+||++|..++.||.++.....|.+-.
T Consensus        45 ~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   45 EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence            46677779999999999999999999999998888765

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4499|consensus

Probab=93.19  E-value=0.32  Score=44.55  Aligned_cols=81  Identities=10%  Similarity=0.134  Sum_probs=59.1

Q ss_pred             ccccceeEEeeccCCCEEEEEecCCCeEEEee--eccccCCceEEEEe-------ccccceeeeeeccCCeEEEEeCCCC
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSF--MLEAQKGQVQAVIS-------DERRIEALDIDPVDEIIYWVDSYDR  391 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~--l~g~~~~~~~~i~~-------~~~~p~glavD~~~~~lYwtd~~~~  391 (428)
                      ..+.-+-||+.|.....+|.+|...-.|..-.  ..+.+-+++.+++.       +-..|.|++||- .++||.+--+..
T Consensus       155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~  233 (310)
T KOG4499|consen  155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGG  233 (310)
T ss_pred             hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCc
Confidence            45556679999999999999999888884433  33333455666653       345799999998 689999888777


Q ss_pred             cEEEEEccCcc
Q psy951          392 NIRRSFMLEAQ  402 (428)
Q Consensus       392 ~I~~~~~~g~~  402 (428)
                      ++...+....+
T Consensus       234 ~V~~~dp~tGK  244 (310)
T KOG4499|consen  234 TVQKVDPTTGK  244 (310)
T ss_pred             EEEEECCCCCc
Confidence            77777765443

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=93.14  E-value=0.053  Score=34.48  Aligned_cols=19  Identities=21%  Similarity=0.861  Sum_probs=15.7

Q ss_pred             CEEeeCCCCceEecCCCCCc
Q psy951          195 GMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~  214 (428)
                      ..|++.+ ++|+|.|++||.
T Consensus        10 h~C~~~~-g~~~C~C~~Gy~   28 (36)
T PF14670_consen   10 HICVNTP-GSYRCSCPPGYK   28 (36)
T ss_dssp             SEEEEET-TSEEEE-STTEE
T ss_pred             CCCccCC-CceEeECCCCCE
Confidence            4899987 579999999998

...

>KOG1217|consensus

Probab=92.99  E-value=0.13  Score=52.59  Aligned_cols=64  Identities=30%  Similarity=0.749  Sum_probs=44.6

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCcc
Q psy951          146 HLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFC  218 (428)
Q Consensus       146 ~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~C  218 (428)
                      ..|.+..+++.|.|++|| ....   ...|.+..++ ..  .. .|.++++|.+.. +.|.|.|++||.|..|
T Consensus       243 ~~c~~~~~~~~C~~~~g~-~~~~---~~~~~~~~~C-~~--~~-~c~~~~~C~~~~-~~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  243 GTCVNTVGSYTCRCPEGY-TGDA---CVTCVDVDSC-AL--IA-SCPNGGTCVNVP-GSYRCTCPPGFTGRLC  306 (487)
T ss_pred             CcccccCCceeeeCCCCc-cccc---cceeeecccc-CC--CC-ccCCCCeeecCC-CcceeeCCCCCCCCCC
Confidence            567777888999999999 2211   0123333322 11  12 288999999988 4599999999999998

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=92.93  E-value=0.17  Score=40.02  Aligned_cols=14  Identities=21%  Similarity=0.612  Sum_probs=8.2

Q ss_pred             cCCCCCc--cCccCCC
Q psy951          208 NCRQDFA--GTFCENY  221 (428)
Q Consensus       208 ~C~~gy~--G~~Ce~~  221 (428)
                      .|..||.  +..|...
T Consensus        41 ~C~~GY~~~~~~Cv~~   56 (96)
T PTZ00382         41 ECNSGFSLDNGKCVSS   56 (96)
T ss_pred             cCcCCcccCCCccccc
Confidence            4777776  4556543

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=92.76  E-value=0.025  Score=49.57  Aligned_cols=67  Identities=16%  Similarity=0.427  Sum_probs=42.0

Q ss_pred             CCC-ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCC----CceEecCCCCCc
Q psy951          144 CSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESET----GDLTCNCRQDFA  214 (428)
Q Consensus       144 C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~----g~~~C~C~~gy~  214 (428)
                      |.+ ......+.|+|.|.+|| .+.+.   .+|+...++.....-.-+|.+.++|.....    ..|.|.|-+||.
T Consensus         8 CKNG~LiQMSNHfEC~Cnegf-vl~~E---ntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~   79 (197)
T PF06247_consen    8 CKNGYLIQMSNHFECKCNEGF-VLKNE---NTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYI   79 (197)
T ss_dssp             -BTEEEEEESSEEEEEESTTE-EEEET---TEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEE
T ss_pred             ccCCEEEEccCceEEEcCCCc-EEccc---cccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCce
Confidence            444 34455678999999999 55543   688877654332212226888899987764    569999999998

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG1836|consensus

Probab=92.51  E-value=0.18  Score=58.92  Aligned_cols=40  Identities=28%  Similarity=0.733  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCEEeeCC-CCceEec-CCCCCccCccCCCCCCC
Q psy951          186 PRVCQCQNGGMCAESE-TGDLTCN-CRQDFAGTFCENYTGIG  225 (428)
Q Consensus       186 ~~~c~C~ngg~C~~~~-~g~~~C~-C~~gy~G~~Ce~~~~~~  225 (428)
                      +.+|+|.+++.|.... .....|. ||+||+|.+|+......
T Consensus       777 C~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~dgy  818 (1705)
T KOG1836|consen  777 CQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECADGY  818 (1705)
T ss_pred             CccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCCcc
Confidence            5688999999998766 4568899 99999999999866543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.41  E-value=1.1  Score=44.57  Aligned_cols=97  Identities=8%  Similarity=-0.106  Sum_probs=61.3

Q ss_pred             cccceeEEeeccCCCEEEEEecC-----------CC-eEEEeee---ccccCCceEEEEeccccceeeeeeccCCeEEEE
Q psy951          322 DERRIEALDIDPVDEIIYWVDSY-----------DR-NIRRSFM---LEAQKGQVQAVISDERRIEALDIDPVDEIIYWV  386 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~-----------~~-~I~ra~l---~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwt  386 (428)
                      .+.+|++|++|+. +.||-++..           .. +|.+..-   ||. ....+++.+++..|.||+++.-+  ||.+
T Consensus        12 ~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-~d~~~vfa~~l~~p~Gi~~~~~G--lyV~   87 (367)
T TIGR02604        12 LLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-YDKSNVFAEELSMVTGLAVAVGG--VYVA   87 (367)
T ss_pred             ccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-cceeEEeecCCCCccceeEecCC--EEEe
Confidence            4789999999986 678888742           22 7877765   331 12234555689999999997544  9998


Q ss_pred             eCCCCcEEEE-EccCc-----ceeEEEecccCC----CCCCCccccccc
Q psy951          387 DSYDRNIRRS-FMLEA-----QKGQVQAGASRH----QNGVPASSQRNL  425 (428)
Q Consensus       387 d~~~~~I~~~-~~~g~-----~~~~l~~~~~~~----~~~~p~~~~~~~  425 (428)
                      +..  .|.+. +-+|.     .+++|+ +++..    +...|.+++++.
T Consensus        88 ~~~--~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gp  133 (367)
T TIGR02604        88 TPP--DILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGP  133 (367)
T ss_pred             CCC--eEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECC
Confidence            755  36544 54442     334444 44333    345566766643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.19  E-value=0.45  Score=36.79  Aligned_cols=43  Identities=19%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             cCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEc
Q psy951           17 MDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRH   61 (428)
Q Consensus        17 ~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~l   61 (428)
                      -||+..+++ .+++..|+||++|+..+ .||-++.....|.....
T Consensus        41 yd~~~~~~v-a~g~~~aNGI~~s~~~k-~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   41 YDGKEVKVV-ASGFSFANGIAISPDKK-YLYVASSLAHSIHVYKR   83 (86)
T ss_pred             EeCCEeEEe-eccCCCCceEEEcCCCC-EEEEEeccCCeEEEEEe
Confidence            467665554 45899999999999888 99999999888876654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=92.19  E-value=0.044  Score=34.88  Aligned_cols=21  Identities=29%  Similarity=0.771  Sum_probs=16.1

Q ss_pred             CCCC--ccccCCCcceecCCCCC
Q psy951          143 PCSH--LCLVIPGGYQCACPENA  163 (428)
Q Consensus       143 ~C~~--~C~~~~~~~~C~C~~g~  163 (428)
                      +|..  .|.+.++.|.|.|++||
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~Gy   29 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKPGY   29 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-CEE
T ss_pred             CCCCCcEeecCCCCEEeECCCCC
Confidence            5655  89999999999999999

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=92.00  E-value=0.1  Score=48.11  Aligned_cols=32  Identities=38%  Similarity=0.998  Sum_probs=26.8

Q ss_pred             CCCCCCC--CCCCCccccCCCcceecCCCCCCCCC
Q psy951          135 APNPCSQ--SPCSHLCLVIPGGYQCACPENATPKL  167 (428)
Q Consensus       135 ~~n~C~~--~~C~~~C~~~~~~~~C~C~~g~~~~~  167 (428)
                      ..++|..  ++|.+.|.+.+++|.|.|++|| .+.
T Consensus       186 ~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~-~~~  219 (224)
T cd01475         186 VPDLCATLSHVCQQVCISTPGSYLCACTEGY-ALL  219 (224)
T ss_pred             CchhhcCCCCCccceEEcCCCCEEeECCCCc-cCC
Confidence            5678864  4799999999999999999999 443

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.98  E-value=14  Score=36.61  Aligned_cols=94  Identities=9%  Similarity=0.007  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEEC---------CCCeEEEEEcCCCCe-EEEEeCC------C
Q psy951           11 RIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDS---------KLNTIESVRHDGRNR-QTILSGS------D   74 (428)
Q Consensus        11 ~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~---------~~~~I~~~~ldG~~~-~~i~~~~------~   74 (428)
                      +|...+.+-....--+.. -++|+|+ +.+..+ .||-+..         ..+.|..++...... ..|..+.      .
T Consensus        28 ~v~ViD~~~~~v~g~i~~-G~~P~~~-~spDg~-~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDG-GFLPNPV-VASDGS-FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             eEEEEECCCCEEEEEEEc-cCCCcee-ECCCCC-EEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            565555544322222333 3599997 999888 9999999         788999988865433 3333221      1


Q ss_pred             CccceeeeeccccEEEEEeCC-CCceeeeccCCC
Q psy951           75 KLQHPISLDVFENNIYWLARD-TGSLYKQDKFGR  107 (428)
Q Consensus        75 ~~~~p~~l~~~~~~lYwtD~~-~~~I~~~~~~g~  107 (428)
                      ..+.-++++..+.+||..... ...+..++....
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence            223357788888899998866 667777777643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=91.72  E-value=0.15  Score=31.49  Aligned_cols=28  Identities=32%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             CCCCCCCCccccCCCcceecCCCCCCCCCC
Q psy951          139 CSQSPCSHLCLVIPGGYQCACPENATPKLP  168 (428)
Q Consensus       139 C~~~~C~~~C~~~~~~~~C~C~~g~~~~~~  168 (428)
                      |....|...|.+... ..|.||+|| .+.+
T Consensus         3 Cn~t~CpA~CDpn~~-~~C~CPeGy-Ilde   30 (34)
T PF09064_consen    3 CNQTECPADCDPNSP-GQCFCPEGY-ILDE   30 (34)
T ss_pred             cccccCCCccCCCCC-CceeCCCce-EecC
Confidence            556678888887653 499999999 5543

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=91.68  E-value=0.35  Score=39.59  Aligned_cols=37  Identities=30%  Similarity=0.680  Sum_probs=25.7

Q ss_pred             CCCCCC---CCCCC-ccccCC--CcceecCCCCCCCCCCCCCCcccccCc
Q psy951          136 PNPCSQ---SPCSH-LCLVIP--GGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       136 ~n~C~~---~~C~~-~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ..+|..   +-|-| .|.-.+  ..+.|.|+.||       .|.+|+...
T Consensus        42 i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GY-------tGeRCEh~d   84 (139)
T PHA03099         42 IRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGY-------TGIRCQHVV   84 (139)
T ss_pred             cccCChhhCCEeECCEEEeeccCCCceeECCCCc-------cccccccee
Confidence            345543   34666 676555  78999999999       678887543

>KOG3514|consensus

Probab=91.41  E-value=2.8  Score=46.16  Aligned_cols=35  Identities=37%  Similarity=0.841  Sum_probs=29.7

Q ss_pred             CCCCCCCEEeeCCCCceEecCCC-CCccCccCCCCCC
Q psy951          189 CQCQNGGMCAESETGDLTCNCRQ-DFAGTFCENYTGI  224 (428)
Q Consensus       189 c~C~ngg~C~~~~~g~~~C~C~~-gy~G~~Ce~~~~~  224 (428)
                      .||+|||+|...- ..|.|.|.. ||.|..||.+...
T Consensus       629 nPC~N~g~C~egw-NrfiCDCs~T~~~G~~CerE~t~  664 (1591)
T KOG3514|consen  629 NPCQNGGKCSEGW-NRFICDCSGTGFEGRTCEREATA  664 (1591)
T ss_pred             CcccCCCCccccc-cccccccccCcccCccccceeee
Confidence            3899999998877 479999986 9999999987653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=90.71  E-value=3  Score=39.10  Aligned_cols=83  Identities=11%  Similarity=0.071  Sum_probs=53.9

Q ss_pred             cceeEEeeccCCCEEEEEecCC-CeEEEeeeccccCCceEEEEe--------ccccceeeeeeccCCeEEEEeCCCCcEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYD-RNIRRSFMLEAQKGQVQAVIS--------DERRIEALDIDPVDEIIYWVDSYDRNIR  394 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~-~~I~ra~l~g~~~~~~~~i~~--------~~~~p~glavD~~~~~lYwtd~~~~~I~  394 (428)
                      +...||+||+.++.+|-+.-.. ..|+.....-. .....+...        .+..|.||++|..+++||-.......|-
T Consensus       118 ~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~  196 (248)
T PF06977_consen  118 KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL  196 (248)
T ss_dssp             S--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred             cceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence            4578999999999999884333 37888876211 122222211        3567999999999999999999988999


Q ss_pred             EEEccCcceeEEE
Q psy951          395 RSFMLEAQKGQVQ  407 (428)
Q Consensus       395 ~~~~~g~~~~~l~  407 (428)
                      ..+.+|+-...+-
T Consensus       197 ~~d~~G~~~~~~~  209 (248)
T PF06977_consen  197 ELDRQGRVVSSLS  209 (248)
T ss_dssp             EE-TT--EEEEEE
T ss_pred             EECCCCCEEEEEE
Confidence            9999998766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=90.27  E-value=4.8  Score=40.90  Aligned_cols=106  Identities=8%  Similarity=0.031  Sum_probs=72.0

Q ss_pred             EEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCC--------CeEEEEEcCCCCeEEEEeCC
Q psy951            2 FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKL--------NTIESVRHDGRNRQTILSGS   73 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~--------~~I~~~~ldG~~~~~i~~~~   73 (428)
                      |-+|.+..+.|.+.+++|...+.+...+...   .++++..+ .|.++-...        ..|..++++|...+.|... 
T Consensus       293 F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~-~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-  367 (419)
T PRK04043        293 FVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKN-YIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-  367 (419)
T ss_pred             EEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCC-EEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-
Confidence            3444555568999999987765554433322   37787777 888876543        4899999999887776654 


Q ss_pred             CCccceeeeeccccEEEEEeCCCC--ceeeeccCCCCceeee
Q psy951           74 DKLQHPISLDVFENNIYWLARDTG--SLYKQDKFGRGVPVLI  113 (428)
Q Consensus        74 ~~~~~p~~l~~~~~~lYwtD~~~~--~I~~~~~~g~~~~~~~  113 (428)
                       ........+..+..|+++....+  .|...+.+|.....+.
T Consensus       368 -~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        368 -GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             -CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence             23334556778888999875433  5888888876555443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.22  E-value=7.4  Score=36.37  Aligned_cols=93  Identities=14%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             eeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEE
Q psy951          306 IRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYW  385 (428)
Q Consensus       306 ~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYw  385 (428)
                      +..++.........++....++++++++..+.+|=+....++|..-.+..   .+....+..-..|..++++..++.||-
T Consensus        13 v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~   89 (300)
T TIGR03866        13 ISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---GEVIGTLPSGPDPELFALHPNGKILYI   89 (300)
T ss_pred             EEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC---CcEEEeccCCCCccEEEECCCCCEEEE
Confidence            33334433333334444456788999999889998887777777766654   222222222345778899888888888


Q ss_pred             EeCCCCcEEEEEccCc
Q psy951          386 VDSYDRNIRRSFMLEA  401 (428)
Q Consensus       386 td~~~~~I~~~~~~g~  401 (428)
                      +....+.|.+.++...
T Consensus        90 ~~~~~~~l~~~d~~~~  105 (300)
T TIGR03866        90 ANEDDNLVTVIDIETR  105 (300)
T ss_pred             EcCCCCeEEEEECCCC
Confidence            8776668888887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.20  E-value=1.2  Score=43.64  Aligned_cols=74  Identities=16%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             ccceeEEeeccCCCEEEEE--ecCC-----------CeEEEeeecccc----------CCceEEEEeccccceeeeeecc
Q psy951          323 ERRIEALDIDPVDEIIYWV--DSYD-----------RNIRRSFMLEAQ----------KGQVQAVISDERRIEALDIDPV  379 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWt--d~~~-----------~~I~ra~l~g~~----------~~~~~~i~~~~~~p~glavD~~  379 (428)
                      ......|+|+| +++||++  |...           .+|.|...+|+-          ....++...++.+|.|||+|..
T Consensus       113 ~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~  191 (331)
T PF07995_consen  113 NHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN  191 (331)
T ss_dssp             SS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT
T ss_pred             CCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECC
Confidence            44566799999 4599998  3332           189999999841          1134556669999999999999


Q ss_pred             CCeEEEEeCCCCcEEEEE
Q psy951          380 DEIIYWVDSYDRNIRRSF  397 (428)
Q Consensus       380 ~~~lYwtd~~~~~I~~~~  397 (428)
                      +++||.+|.+.+..+..+
T Consensus       192 tg~l~~~d~G~~~~dein  209 (331)
T PF07995_consen  192 TGRLWAADNGPDGWDEIN  209 (331)
T ss_dssp             TTEEEEEEE-SSSSEEEE
T ss_pred             CCcEEEEccCCCCCcEEE
Confidence            999999999877665544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3516|consensus

Probab=90.09  E-value=6.4  Score=44.07  Aligned_cols=33  Identities=39%  Similarity=1.017  Sum_probs=28.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCC-CCccCccCCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQ-DFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~-gy~G~~Ce~~~~  223 (428)
                      +|.|||.|+.... .|.|.|.- -|.|.+|..+..
T Consensus       962 ~C~NGG~Cvery~-gytCDCs~Tay~Gp~Cs~eig  995 (1306)
T KOG3516|consen  962 PCLNGGHCVERYD-GYTCDCSRTAYDGPFCSKEIG  995 (1306)
T ss_pred             cccCCCEEEEecC-ceeeccccCcCCCCccccccc
Confidence            8999999998885 49999996 699999977553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.60  E-value=3.7  Score=39.47  Aligned_cols=82  Identities=17%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             eeEEeecc---CCCEEEEEecCCCeEEEeeec----cccCC------ceEEEEeccccceeeeeeccCCeEEEEeCCCCc
Q psy951          326 IEALDIDP---VDEIIYWVDSYDRNIRRSFML----EAQKG------QVQAVISDERRIEALDIDPVDEIIYWVDSYDRN  392 (428)
Q Consensus       326 ~~~l~~d~---~~~~lyWtd~~~~~I~ra~l~----g~~~~------~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~  392 (428)
                      +.|++..+   ..+.|||.--.+.++||....    ++...      ..+.+-.+.....|+++|. +++||+++.....
T Consensus       130 ~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~a  208 (287)
T PF03022_consen  130 IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNA  208 (287)
T ss_dssp             EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTE
T ss_pred             ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCe
Confidence            55677755   557999999888888887632    21111      1222323345779999999 8999999999999


Q ss_pred             EEEEEccC----cceeEEEe
Q psy951          393 IRRSFMLE----AQKGQVQA  408 (428)
Q Consensus       393 I~~~~~~g----~~~~~l~~  408 (428)
                      |.+.+.++    ..-++|..
T Consensus       209 I~~w~~~~~~~~~~~~~l~~  228 (287)
T PF03022_consen  209 IGCWDPDGPYTPENFEILAQ  228 (287)
T ss_dssp             EEEEETTTSB-GCCEEEEEE
T ss_pred             EEEEeCCCCcCccchheeEE
Confidence            99999998    33445553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>smart00051 DSL delta serrate ligand

Probab=88.87  E-value=0.43  Score=34.56  Aligned_cols=46  Identities=24%  Similarity=0.532  Sum_probs=27.4

Q ss_pred             eecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCcc
Q psy951          156 QCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFC  218 (428)
Q Consensus       156 ~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~C  218 (428)
                      .-.|+++|       .|..|.....   +.   ..+..+.+|...  |  .|.|++||.|..|
T Consensus        18 rv~C~~~~-------yG~~C~~~C~---~~---~d~~~~~~Cd~~--G--~~~C~~Gw~G~~C   63 (63)
T smart00051       18 RVTCDENY-------YGEGCNKFCR---PR---DDFFGHYTCDEN--G--NKGCLEGWMGPYC   63 (63)
T ss_pred             EeeCCCCC-------cCCccCCEeC---cC---ccccCCccCCcC--C--CEecCCCCcCCCC
Confidence            44577777       5666643211   00   013455677542  2  4889999999887

>KOG4260|consensus

Probab=88.24  E-value=0.24  Score=45.91  Aligned_cols=66  Identities=24%  Similarity=0.634  Sum_probs=43.1

Q ss_pred             CCCCCCCC--CCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCC
Q psy951          135 APNPCSQS--PCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCR  210 (428)
Q Consensus       135 ~~n~C~~~--~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~  210 (428)
                      .+|+|.+.  +|.-  .|+++.++|+|.+.+||. .-.    ..|+.-.+       .|. ...+.|.+.. +.|+|.|+
T Consensus       235 DvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~-~g~----d~C~~~~d-------~~~-~kn~~c~ni~-~~~r~v~f  300 (350)
T KOG4260|consen  235 DVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYK-KGV----DECQFCAD-------VCA-SKNRPCMNID-GQYRCVCF  300 (350)
T ss_pred             cHHHHhcCCCCCChhheeecCCCceEeccccccc-CCh----HHhhhhhh-------hcc-cCCCCcccCC-ccEEEEec
Confidence            56788753  6754  999999999999999992 211    22322111       111 1225677776 67999999


Q ss_pred             CCCc
Q psy951          211 QDFA  214 (428)
Q Consensus       211 ~gy~  214 (428)
                      .|+.
T Consensus       301 ~~~~  304 (350)
T KOG4260|consen  301 SGLI  304 (350)
T ss_pred             ccce
Confidence            9876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=88.14  E-value=32  Score=34.93  Aligned_cols=95  Identities=8%  Similarity=0.016  Sum_probs=59.1

Q ss_pred             CCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEEC--CCCeEEEEEcCCCCeEEEEeCCCCccceeeeeccc
Q psy951            9 SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDS--KLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFE   86 (428)
Q Consensus         9 ~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~--~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~   86 (428)
                      ...|..++.||.+.+.+... -..-...+..+..+ +|+++..  +...|...++++..++.+.... +.......+..+
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~-~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG  257 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDG-SSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDG  257 (435)
T ss_pred             ceEEEEECCCCCCcEEEecC-CCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCC
Confidence            34799999999998777542 22344566777667 8888754  3468999999887766554332 222233455566


Q ss_pred             cEEEEEeCC--CCceeeeccCC
Q psy951           87 NNIYWLARD--TGSLYKQDKFG  106 (428)
Q Consensus        87 ~~lYwtD~~--~~~I~~~~~~g  106 (428)
                      ++|+++-..  ...|+..+..+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCC
Confidence            777766432  22455555543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.84  E-value=3.2  Score=39.91  Aligned_cols=62  Identities=24%  Similarity=0.419  Sum_probs=48.2

Q ss_pred             CCceeEEEcCCCCCEEEEEECCCCeEEEEEcCC----CCeEEEEeCCCCccceeeeeccc---cEEEEEeC
Q psy951           31 RHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDG----RNRQTILSGSDKLQHPISLDVFE---NNIYWLAR   94 (428)
Q Consensus        31 ~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG----~~~~~i~~~~~~~~~p~~l~~~~---~~lYwtD~   94 (428)
                      ....|+++|. .+ .||+++...+.|.+.+.++    .+.++++.....+..|-++.+..   ++||....
T Consensus       186 ~~s~g~~~D~-~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  186 SQSDGMAIDP-NG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             -SECEEEEET-TT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CCCceEEECC-CC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            3568999997 57 7999999999999999999    56677777653588999999887   89999863

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.24  E-value=2.6  Score=41.42  Aligned_cols=83  Identities=10%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE-E-----eccccceeeeeec---cCCeEEEEeCCC---
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV-I-----SDERRIEALDIDP---VDEIIYWVDSYD---  390 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i-~-----~~~~~p~glavD~---~~~~lYwtd~~~---  390 (428)
                      |++|++|++.|. +.||-++. ..+|.+...+|..  ...+. +     .+..-..|||+|.   .++.||.+.+..   
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~--~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~   76 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSL--KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED   76 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEE--CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred             CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcC--cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence            568999999997 78899998 8899988877731  12221 1     1456778999998   468898877732   


Q ss_pred             -----CcEEEEEccCc-----ceeEEEec
Q psy951          391 -----RNIRRSFMLEA-----QKGQVQAG  409 (428)
Q Consensus       391 -----~~I~~~~~~g~-----~~~~l~~~  409 (428)
                           .+|.+..++..     ..++|+.+
T Consensus        77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~  105 (331)
T PF07995_consen   77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTG  105 (331)
T ss_dssp             SSSEEEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             CCCcceeeEEEeccCCccccccceEEEEE
Confidence                 46888777665     34555544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=87.15  E-value=0.15  Score=44.71  Aligned_cols=71  Identities=25%  Similarity=0.702  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCC-ccccCC---CcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCC--CCCCCCEEeeCCCCceEecC
Q psy951          136 PNPCSQSPCSH-LCLVIP---GGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVC--QCQNGGMCAESETGDLTCNC  209 (428)
Q Consensus       136 ~n~C~~~~C~~-~C~~~~---~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c--~C~ngg~C~~~~~g~~~C~C  209 (428)
                      ++.|....|.. .|+..+   ....|+|.-|+ ...+   ...|...-+      .+|  .|..+-.|.... +-|+|.|
T Consensus        87 p~~C~~~~Cg~GKCI~d~~~~~~~~CSC~IGk-V~~d---n~kCtk~G~------T~C~LKCk~nE~CK~~~-~~Y~C~~  155 (197)
T PF06247_consen   87 PNKCNNKDCGSGKCILDPDNPNNPTCSCNIGK-VPDD---NKKCTKTGE------TKCSLKCKENEECKLVD-GYYKCVC  155 (197)
T ss_dssp             EGGGSS---TTEEEEEEEGGGSEEEEEE-TEE-ETTT---TTESEEEE--------------TTTEEEEEET-TEEEEEE
T ss_pred             hhhcCceecCCCeEEecCCCCCCceeEeeece-Eecc---CCcccCCCc------cceeeecCCCcceeeeC-cEEEeec
Confidence            35555556655 787666   45699999999 4222   356653321      233  476667898776 6799999


Q ss_pred             CCCCccCc
Q psy951          210 RQDFAGTF  217 (428)
Q Consensus       210 ~~gy~G~~  217 (428)
                      .+||.|.-
T Consensus       156 ~~~~~~~~  163 (197)
T PF06247_consen  156 KEGFPGDG  163 (197)
T ss_dssp             -TT-EEET
T ss_pred             CCCCCCCC
Confidence            99998643

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=86.58  E-value=0.36  Score=30.69  Aligned_cols=29  Identities=24%  Similarity=0.718  Sum_probs=20.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc--cCcc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA--GTFC  218 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~--G~~C  218 (428)
                      .|+.+..|++...|++.|.|..||.  |..|
T Consensus         6 ~cP~NA~C~~~~dG~eecrCllgyk~~~~~C   36 (37)
T PF12946_consen    6 KCPANAGCFRYDDGSEECRCLLGYKKVGGKC   36 (37)
T ss_dssp             ---TTEEEEEETTSEEEEEE-TTEEEETTEE
T ss_pred             cCCCCcccEEcCCCCEEEEeeCCccccCCCc
Confidence            4556678999888999999999998  4445

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.81  E-value=13  Score=38.02  Aligned_cols=80  Identities=14%  Similarity=0.104  Sum_probs=56.0

Q ss_pred             eccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEE-----EE-e-ccccceeeeeec------cCCeEE
Q psy951          318 DVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQA-----VI-S-DERRIEALDIDP------VDEIIY  384 (428)
Q Consensus       318 ~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~-----i~-~-~~~~p~glavD~------~~~~lY  384 (428)
                      .+.++|..|.+|++.|. +.||-+++...+|++..-++.  ....+     ++ . +..-+.|||+|.      .++.||
T Consensus        24 ~va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~--~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY  100 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETG--EVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY  100 (454)
T ss_pred             EEECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCC--ceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence            35689999999999985 688889987788888765442  11111     12 2 456688999994      457899


Q ss_pred             EEeC---------CCCcEEEEEccC
Q psy951          385 WVDS---------YDRNIRRSFMLE  400 (428)
Q Consensus       385 wtd~---------~~~~I~~~~~~g  400 (428)
                      ++.+         ...+|.+..++.
T Consensus       101 vsyt~~~~~~~~~~~~~I~R~~l~~  125 (454)
T TIGR03606       101 ISYTYKNGDKELPNHTKIVRYTYDK  125 (454)
T ss_pred             EEEeccCCCCCccCCcEEEEEEecC
Confidence            9853         145788888863

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=85.71  E-value=0.77  Score=31.44  Aligned_cols=18  Identities=22%  Similarity=0.748  Sum_probs=14.8

Q ss_pred             eEecCCCCCccCccCCCC
Q psy951          205 LTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       205 ~~C~C~~gy~G~~Ce~~~  222 (428)
                      -+|.|++++.|..|+.-.
T Consensus        19 G~C~C~~~~~G~~C~~C~   36 (50)
T cd00055          19 GQCECKPNTTGRRCDRCA   36 (50)
T ss_pred             CEEeCCCcCCCCCCCCCC
Confidence            379999999999998543

>KOG3514|consensus

Probab=85.31  E-value=3.6  Score=45.35  Aligned_cols=33  Identities=21%  Similarity=0.579  Sum_probs=28.6

Q ss_pred             CCCCCCCCC--ccccCCCcceecCCC-CCCCCCCCCCCccccc
Q psy951          138 PCSQSPCSH--LCLVIPGGYQCACPE-NATPKLPGVAEIRCSA  177 (428)
Q Consensus       138 ~C~~~~C~~--~C~~~~~~~~C~C~~-g~~~~~~~~~g~~C~~  177 (428)
                      .|..+||+|  .|...++.|.|.|.. ||       .|++|+-
T Consensus       625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~-------~G~~Cer  660 (1591)
T KOG3514|consen  625 ICESNPCQNGGKCSEGWNRFICDCSGTGF-------EGRTCER  660 (1591)
T ss_pred             ccCCCcccCCCCccccccccccccccCcc-------cCccccc
Confidence            799999999  999999999999976 66       5788874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=85.03  E-value=18  Score=36.82  Aligned_cols=105  Identities=20%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             EEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCC--CeEEEEEcCCCCeEEEEeCCCCccce
Q psy951            2 FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKL--NTIESVRHDGRNRQTILSGSDKLQHP   79 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~--~~I~~~~ldG~~~~~i~~~~~~~~~p   79 (428)
                      |.++....+.|+..+++|...+.+.... ..-...+..+..+ .|+++....  ..|..++++|...+.+..+  .....
T Consensus       306 f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~  381 (435)
T PRK05137        306 FESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEG  381 (435)
T ss_pred             EEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCceEeccCC--CCCCC
Confidence            3344444457888888887766654321 1223456777777 888876543  4789999988877665543  22233


Q ss_pred             eeeeccccEEEEEeCCC-----CceeeeccCCCCce
Q psy951           80 ISLDVFENNIYWLARDT-----GSLYKQDKFGRGVP  110 (428)
Q Consensus        80 ~~l~~~~~~lYwtD~~~-----~~I~~~~~~g~~~~  110 (428)
                      ...+..+..||++-...     ..|+..+.+|+...
T Consensus       382 p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        382 PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             CeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            44566677888875432     35888888865443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=84.91  E-value=17  Score=37.31  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCC--eEEEEEcCCCCeEEEEeCCCCccceeeeecc
Q psy951            8 ASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLN--TIESVRHDGRNRQTILSGSDKLQHPISLDVF   85 (428)
Q Consensus         8 ~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~--~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~   85 (428)
                      ..+.|.+.++++...+.+.... ....+.++.+..+ .||.+....+  .|..+++++...+.+...  ......+.+..
T Consensus       328 g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~-~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spd  403 (448)
T PRK04792        328 GKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGR-SMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPN  403 (448)
T ss_pred             CCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCC-EEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCC
Confidence            3457888888765554443222 2344567887777 8988865443  788899988876655443  22222256777


Q ss_pred             ccEEEEEeCCCC--ceeeeccCCCCc
Q psy951           86 ENNIYWLARDTG--SLYKQDKFGRGV  109 (428)
Q Consensus        86 ~~~lYwtD~~~~--~I~~~~~~g~~~  109 (428)
                      +..|+++....+  .|+..+.+|...
T Consensus       404 G~~I~~~~~~~g~~~l~~~~~~G~~~  429 (448)
T PRK04792        404 GTMVIYSTTYQGKQVLAAVSIDGRFK  429 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCce
Confidence            888988876544  366677766543

>KOG3516|consensus

Probab=84.85  E-value=0.67  Score=51.37  Aligned_cols=35  Identities=31%  Similarity=0.793  Sum_probs=29.2

Q ss_pred             CCCCCCCEEeeCCCCceEecCC-CCCccCccCCCCCC
Q psy951          189 CQCQNGGMCAESETGDLTCNCR-QDFAGTFCENYTGI  224 (428)
Q Consensus       189 c~C~ngg~C~~~~~g~~~C~C~-~gy~G~~Ce~~~~~  224 (428)
                      .+|++||.|...- ..|.|.|. .||.|..|+.....
T Consensus       551 N~CehgG~C~Qs~-~~f~C~C~~TGY~GatCHtsi~e  586 (1306)
T KOG3516|consen  551 NPCEHGGKCSQSW-DDFECNCELTGYKGATCHTSIYE  586 (1306)
T ss_pred             ccccCCCcccccc-cceeEeccccccccccccCCCcc
Confidence            3799999999844 57999999 79999999876544

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=83.98  E-value=0.93  Score=30.81  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=17.4

Q ss_pred             EEeeCCCCceEecCCCCCccCccCCCC
Q psy951          196 MCAESETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       196 ~C~~~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      .|....   .+|.|+++|.|..|+.=.
T Consensus        12 ~C~~~~---G~C~C~~~~~G~~C~~C~   35 (49)
T PF00053_consen   12 TCDPST---GQCVCKPGTTGPRCDQCK   35 (49)
T ss_dssp             SEEETC---EEESBSTTEESTTS-EE-
T ss_pred             cccCCC---CEEeccccccCCcCcCCC
Confidence            566533   589999999999998643

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=83.06  E-value=57  Score=33.14  Aligned_cols=77  Identities=10%  Similarity=0.079  Sum_probs=52.5

Q ss_pred             eEEeeccCCCEEEEEecCCC--eEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeC--CCCcEEEEEccCcc
Q psy951          327 EALDIDPVDEIIYWVDSYDR--NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQ  402 (428)
Q Consensus       327 ~~l~~d~~~~~lyWtd~~~~--~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~--~~~~I~~~~~~g~~  402 (428)
                      ...++.|..++|+++.....  .|+...+++   +....+..+ ......+....++.|+|+..  +...|...+++|+.
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~---g~~~~Lt~~-~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLST---GSVRTLTPG-SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCC---CCeEECCCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            35788898899988765332  677777765   334433332 23445567777888988665  55679999999988


Q ss_pred             eeEEE
Q psy951          403 KGQVQ  407 (428)
Q Consensus       403 ~~~l~  407 (428)
                      ++.|.
T Consensus       415 ~~~l~  419 (433)
T PRK04922        415 RQRLV  419 (433)
T ss_pred             eEEcc
Confidence            77775

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=82.38  E-value=12  Score=36.12  Aligned_cols=61  Identities=11%  Similarity=0.032  Sum_probs=47.1

Q ss_pred             eCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceeeeeccccEEEEEe
Q psy951           27 MTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLA   93 (428)
Q Consensus        27 ~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~~~lYwtD   93 (428)
                      .+++..|++-...  .+ +||..|++.+.|.+++.+....+++..-   -..|.||+..++.+|..-
T Consensus       199 ~~GLsmPhSPRWh--dg-rLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~rGL~f~G~llvVgm  259 (335)
T TIGR03032       199 ASGLSMPHSPRWY--QG-KLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFTRGLAFAGDFAFVGL  259 (335)
T ss_pred             EcCccCCcCCcEe--CC-eEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCCcccceeCCEEEEEe
Confidence            4577888887776  46 8999999999999999985555566554   347889998877777764

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PHA02887 EGF-like protein; Provisional

Probab=81.47  E-value=1  Score=36.30  Aligned_cols=36  Identities=25%  Similarity=0.562  Sum_probs=27.3

Q ss_pred             CCCCCCC---CCCCC-ccccCC--CcceecCCCCCCCCCCCCCCccccc
Q psy951          135 APNPCSQ---SPCSH-LCLVIP--GGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       135 ~~n~C~~---~~C~~-~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      ...||..   +-|-| .|.-.+  ..+.|.|+.||       .|.+|+.
T Consensus        82 hf~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GY-------tG~RCE~  123 (126)
T PHA02887         82 FFEKCKNDFNDFCINGECMNIIDLDEKFCICNKGY-------TGIRCDE  123 (126)
T ss_pred             CccccChHhhCEeeCCEEEccccCCCceeECCCCc-------ccCCCCc
Confidence            5678875   36777 777655  67899999999       6788864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=81.14  E-value=27  Score=35.44  Aligned_cols=101  Identities=19%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             eeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCC--CeEEEEEcCCCCeEEEEeCCCCccceeee
Q psy951            5 ETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKL--NTIESVRHDGRNRQTILSGSDKLQHPISL   82 (428)
Q Consensus         5 d~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~--~~I~~~~ldG~~~~~i~~~~~~~~~p~~l   82 (428)
                      |....+.|...++++...+.+...+ ......++.+..+ .|+++....  ..|...++++...+.+..+  ....-...
T Consensus       311 d~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~  386 (433)
T PRK04922        311 DRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSVRTLTPG--SLDESPSF  386 (433)
T ss_pred             CCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCCeEECCCC--CCCCCceE
Confidence            3333457888888766555543322 3445678888777 898876533  3789999987766655433  12222355


Q ss_pred             eccccEEEEEeCC--CCceeeeccCCCCc
Q psy951           83 DVFENNIYWLARD--TGSLYKQDKFGRGV  109 (428)
Q Consensus        83 ~~~~~~lYwtD~~--~~~I~~~~~~g~~~  109 (428)
                      +..+..|+++...  ...|+..+.+|...
T Consensus       387 spdG~~i~~~s~~~g~~~L~~~~~~g~~~  415 (433)
T PRK04922        387 APNGSMVLYATREGGRGVLAAVSTDGRVR  415 (433)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            6667788887653  33577777776543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=81.02  E-value=66  Score=32.49  Aligned_cols=76  Identities=8%  Similarity=0.068  Sum_probs=51.3

Q ss_pred             EEeeccCCCEEEEEecCCC--eEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeC--CCCcEEEEEccCcce
Q psy951          328 ALDIDPVDEIIYWVDSYDR--NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQK  403 (428)
Q Consensus       328 ~l~~d~~~~~lyWtd~~~~--~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~--~~~~I~~~~~~g~~~  403 (428)
                      ...+.|..++|+++....+  .|+...+++   ++.+.+... ...+..++...++.|+++..  +...|...+++|...
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t---g~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQR---GSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCC---CCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            3567888889988865433  677777766   334444332 22334567777999999765  456799999999877


Q ss_pred             eEEE
Q psy951          404 GQVQ  407 (428)
Q Consensus       404 ~~l~  407 (428)
                      +.|.
T Consensus       411 ~~l~  414 (430)
T PRK00178        411 LPLP  414 (430)
T ss_pred             EECc
Confidence            6664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=80.39  E-value=66  Score=32.11  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=51.2

Q ss_pred             ceeEEeeccCCCEEEEEecCCC--eEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeC--CCCcEEEEEccC
Q psy951          325 RIEALDIDPVDEIIYWVDSYDR--NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDS--YDRNIRRSFMLE  400 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~--~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~--~~~~I~~~~~~g  400 (428)
                      .....++.|..++|+++.....  +|+...+++   ...+.+... ......++...++.|+|+..  +...+.+.+.+|
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            3456778888899999976543  677777765   334444322 22344466666899999776  345688888888


Q ss_pred             cceeEE
Q psy951          401 AQKGQV  406 (428)
Q Consensus       401 ~~~~~l  406 (428)
                      +..+.+
T Consensus       399 ~~~~~~  404 (417)
T TIGR02800       399 RFRARL  404 (417)
T ss_pred             ceeeEC
Confidence            766554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	428
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		4e-26
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		4e-26
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		4e-26
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		4e-26
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		1e-22
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		1e-22
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		3e-20
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		4e-20
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		4e-20
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		8e-20
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-19
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-19
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		2e-19
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		2e-19
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		2e-06
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		3e-05

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ + +  P GL++D   +  LYW D+KLN I    
Sbjct: 133 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 191
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
            DG NRQ ++ GS  L HP +L +FE+ +YW    T S+   +K+ G G+   I  D+ +
Sbjct: 192 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 248
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
           P  + A+  QR   +A NPC      CSHLCL+ P    YQCACP
Sbjct: 249 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 292

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ + +  P GL++D   +  LYW D+KLN I    
Sbjct: 133 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 191
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
            DG NRQ ++ GS  L HP +L +FE+ +YW    T S+   +K+ G G+   I  D+ +
Sbjct: 192 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 248
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
           P  + A+  QR   +A NPC      CSHLCL+ P    YQCACP
Sbjct: 249 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 292

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ + +  P GL++D   +  LYW D+KLN I    
Sbjct: 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 194
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
            DG NRQ ++ GS  L HP +L +FE+ +YW    T S+   +K+ G G+   I  D+ +
Sbjct: 195 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 251
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
           P  + A+  QR   +A NPC      CSHLCL+ P    YQCACP
Sbjct: 252 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 295

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ + +  P GL++D   +  LYW D+KLN I    
Sbjct: 141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 199
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
            DG NRQ ++ GS  L HP +L +FE+ +YW    T S+   +K+ G G+   I  D+ +
Sbjct: 200 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 256
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
           P  + A+  QR   +A NPC      CSHLCL+ P    YQCACP
Sbjct: 257 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W + G +PRIE++ MDGS RR +  T +  P GL++D A    +YWVD+K + IE   
Sbjct: 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERAN 274
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            DG +R+ ++  S  L HP ++ VFE+++YW    T S+   +KF      +I   L  P
Sbjct: 275 LDGSHRKAVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 332
Query: 121 SGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGGYQCACP 160
             +   H QR   +  N C  +   C+HLCL     Y CACP
Sbjct: 333 MDIHTLHPQR-QPAGKNRCGDNNGGCTHLCLPSGQNYTCACP 373

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W + G +PRIE++ MDGS RR +  T +  P GL++D A    +YWVD+K + IE   
Sbjct: 173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERAN 231
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            DG +R+ ++  S  L HP ++ VFE+++YW    T S+   +KF      +I   L  P
Sbjct: 232 LDGSHRKAVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 289
Query: 121 SGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGGYQCACP 160
             +   H QR   +  N C  +   C+HLCL     Y CACP
Sbjct: 290 MDIHTLHPQR-QPAGKNRCGDNNGGCTHLCLPSGQNYTCACP 330

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W E G  P+I+ A MDGS R +LV   V    GL++D A    LYW D   N IES  
Sbjct: 137 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 194
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             G NR+ I   +D L HP  L  +++ IYW      S+ + +K       +I   L   
Sbjct: 195 MLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 251
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIP-GGYQCACP 160
             +  +H+ R   S  N C+ S   CSHLCL +P GG+ C CP
Sbjct: 252 MDILVFHSSR--QSGWNECASSNGHCSHLCLAVPVGGFVCGCP 292

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W E G  P+I+ A MDGS R +LV   V    GL++D A    LYW D   N IES  
Sbjct: 135 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 192
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             G NR+ I   +D L HP  L  +++ IYW      S+ + +K       +I   L   
Sbjct: 193 MLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 249
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIP-GGYQCACP 160
             +  +H+ R   S  N C+ S   CSHLCL +P GG+ C CP
Sbjct: 250 MDILVFHSSR--QSGWNECASSNGHCSHLCLAVPVGGFVCGCP 290

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W E G  P+I+ A MDGS R +LV   V    GL++D A    LYW D   N IES  
Sbjct: 142 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 199
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             G NR+ I   +D L HP  L  +++ IYW      S+ + +K       +I   L   
Sbjct: 200 MLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 256
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIP-GGYQCACP 160
             +  +H+ R   S  N C+ S   CSHLCL +P GG+ C CP
Sbjct: 257 MDILVFHSSR--QSGWNECASSNGHCSHLCLAVPVGGFVCGCP 297

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D  +   LYWVDSKL++I S+ 
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 192
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
             +  +H    N + P   N C     S   C +LCL  P        + CACP+
Sbjct: 253 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 303

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D  +   LYWVDSKL++I S+ 
Sbjct: 216 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 274
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 334
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
             +  +H    N + P   N C     S   C +LCL  P        + CACP+
Sbjct: 335 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 385

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D  +   LYWVDSKL++I S+ 
Sbjct: 256 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 314
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 315 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 374
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
             +  +H    N + P   N C     S   C +LCL  P        + CACP+
Sbjct: 375 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 425

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D  +   LYWVDSKL++I S+ 
Sbjct: 510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 568
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 569 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 628
Query: 121 SGVKAYHAQRYNTSAPNPC-----SQSPCSHLCLVIPG------GYQCACPE 161
             +  +H Q       N C     S   C +LCL  P        + CACP+
Sbjct: 629 EDMVLFH-QLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 679

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D  +   LYWVDSKL++I S+ 
Sbjct: 528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 586
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 646
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
             +  +H    N + P   N C     S   C +LCL  P        + CACP+
Sbjct: 647 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 697

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 1   MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
           ++W +    +P+IE++ MDG++RR L    +  P GL+ DA     L WVD+  +  E +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECL 194
Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQD 103
                 R+ +L G   LQ+P ++  +  N+Y+    T S+   D
Sbjct: 195 NPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMD 235

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W +  + P I  A + G    +++   +  P G+++D  +  T++W DS+L+ IE  +
Sbjct: 50  VYWTDI-SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAK 107
Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWL--ARDTGSLYKQDKFGRGVPVLISKDLV 118
            DG  R+ +          I  D    N+YW    RD   +      G    +L   +L 
Sbjct: 108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167
Query: 119 NPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATP 165
            P+G+                  +  S LC V  G ++  C   A P
Sbjct: 168 LPNGL---------------TFDAFSSQLCWVDAGTHRAECLNPAQP 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	9e-49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	9e-07
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-47
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-05
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-47
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-16
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-10
3v65_B	386	Low-density lipoprotein receptor-related protein;	4e-07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	7e-16
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-13
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	8e-41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	9e-10
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	1e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	8e-41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-17
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	3e-13
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	8e-13
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	3e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	3e-34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-18
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	7e-14
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	3e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	7e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-35
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	5e-23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	5e-17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-12
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-34
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-20
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	5e-11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-04
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-04
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	1e-13
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	5e-05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	3e-04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-09
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	5e-08
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-09
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	4e-05
2vh0_B	134	Activated factor XA light chain; serine protease,	6e-04
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-07
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-07
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-07
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	3e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-06
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-05
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	6e-05
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	8e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-04
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	6e-05
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	3e-04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	3e-04
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	4e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	8e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  176 bits (447), Expect = 9e-49
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D      LYWVDSKL++I S+ 
Sbjct: 528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL-SGRLYWVDSKLHSISSID 586

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 646

Query: 121 SGVKAYHAQRYNTSAPNPCSQSP-----CSHLCLVIP------GGYQCACPEN 162
             +  +H         N C ++      C +LCL  P        + CACP+ 
Sbjct: 647 EDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 698

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 66.0 bits (160), Expect = 8e-12
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 1   MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
           ++W++      I S  +D +H  S    ++   ++ P GL+VD    + +YW DS L T+
Sbjct: 438 IYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV 495

Query: 57  ESVRHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKF---GRGVPV 111
                 G  R+T+    +    P  I +D     +YW   D G+  K  K    G  +  
Sbjct: 496 SVADTKGVKRKTLF--RENGSKPRAIVVDPVHGFMYWT--DWGTPAKIKKGGLNGVDIYS 551

Query: 112 LISKDLVNPSG 122
           L+++++  P+G
Sbjct: 552 LVTENIQWPNG 562

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 50.2 bits (119), Expect = 9e-07
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 299 VYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK 358
            ++N  E+R     +  +  +I + R + ALD +     IYW D   R I  + +  A  
Sbjct: 399 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 458

Query: 359 GQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
                 +   D +  + L +D +   IYW DS    +  +
Sbjct: 459 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 44/270 (16%), Positives = 81/270 (30%), Gaps = 46/270 (17%)

Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
               +   CSH+C  +  GY+C CP+                       L    +C++  
Sbjct: 314 ECLDNNGGCSHVCNDLKIGYECLCPDG--------------------FQLVAQRRCEDID 353

Query: 196 MCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVW 255
            C + +T    C   +      CE    +       ++             V +  Y  +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA-------------VGSIAYLFF 400

Query: 256 RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAY--ETHK 313
             R   + M    S  +       NV          ++       S            H 
Sbjct: 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVA--LDTEVASNRIYWSDLSQRMICSTQLDRAHG 458

Query: 314 RRFRDVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--SDER 369
               D +   D +  + L +D +   IYW DS    +  +      KG  +  +   +  
Sbjct: 459 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFRENGS 514

Query: 370 RIEALDIDPVDEIIYWVDSYDR-NIRRSFM 398
           +  A+ +DPV   +YW D      I++  +
Sbjct: 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  174 bits (441), Expect = 3e-48
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D      LYWVDSKL++I S+ 
Sbjct: 510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL-SGRLYWVDSKLHSISSID 568

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 569 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 628

Query: 121 SGVKAYHAQRYNTSAPNPCSQSP-----CSHLCLVIP------GGYQCACPEN 162
             +  +H         N C ++      C +LCL  P        + CACP+ 
Sbjct: 629 EDMVLFHQLT-QPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 680

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 15/131 (11%)

Query: 1   MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
           ++W++      I S  +D +H  S    ++   ++ P GL+VD    + +YW DS L T+
Sbjct: 420 IYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV 477

Query: 57  ESVRHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLARDTGS---LYKQDKFGRGVPV 111
                 G  R+T+    ++   P  I +D     +YW   D G+   + K    G  +  
Sbjct: 478 SVADTKGVKRKTLF--REQGSKPRAIVVDPVHGFMYWT--DWGTPAKIKKGGLNGVDIYS 533

Query: 112 LISKDLVNPSG 122
           L+++++  P+G
Sbjct: 534 LVTENIQWPNG 544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
           + ++N  E+R     +  +  +I + R + ALD +     IYW D   R I  + +  A 
Sbjct: 380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 439

Query: 358 KGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
                  +   D +  + L +D +   IYW DS    +  +
Sbjct: 440 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 43/270 (15%), Positives = 79/270 (29%), Gaps = 46/270 (17%)

Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
               +   CSH+C  +  GY+C CP+    +L            + P    ++C    GG
Sbjct: 296 ECLDNNGGCSHVCNDLKIGYECLCPDGF--QLVAQRRCEDIDECQDPDTCSQLCVNLEGG 353

Query: 196 MCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVW 255
              + E G       +         Y                               +  
Sbjct: 354 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR-------------------------HEV 388

Query: 256 RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAY---ETH 312
           RK    ++  ++L     +          A      ++       S              
Sbjct: 389 RKMTLDRSEYTSLIPNLRNVV--------ALDTEVASNRIYWSDLSQRMICSTQLDRAHG 440

Query: 313 KRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDE--R 369
              +  VIS + +  + L +D +   IYW DS    +  +      KG  +  +  E   
Sbjct: 441 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFREQGS 496

Query: 370 RIEALDIDPVDEIIYWVDSYDR-NIRRSFM 398
           +  A+ +DPV   +YW D      I++  +
Sbjct: 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 20  SHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG--SDKLQ 77
               + ++  +R+   L  + A +   YW D     I S + D  +  +      S  +Q
Sbjct: 395 RSEYTSLIPNLRNVVALDTEVASNRI-YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453

Query: 78  HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
            P  +++D   +NIYW     G++   D  G     L  +    P  +
Sbjct: 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI 501

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  166 bits (420), Expect = 2e-47
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D      LYWVDSKL++I S+ 
Sbjct: 216 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR-LYWVDSKLHSISSID 274

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 334

Query: 121 SGVKAYHAQRYNTSAPNPCSQSP-----CSHLCLVIP------GGYQCACPEN 162
             +  +H         N C ++      C +LCL  P        + CACP+ 
Sbjct: 335 EDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 386

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 1   MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
           ++W++      I S  +D +H  S    ++   ++ P GL+VD  +   +YW DS L T+
Sbjct: 126 IYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 183

Query: 57  ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISK 115
                 G  R+T+   +      I +D     +YW        + K    G  +  L+++
Sbjct: 184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243

Query: 116 DLVNPSGV 123
           ++  P+G+
Sbjct: 244 NIQWPNGI 251

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 54/274 (19%)

Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
           N C  +   CSH+C  +  GY+C CP         VA+ RC    E          CQ+ 
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCP----DGFQLVAQRRCEDIDE----------CQDP 46

Query: 195 GMCA---ESETGDLTCNCRQDFA----GTFCENYTGIGQGLTLGRSLLYIPTLLLLLALV 247
             C+    +  G   C C + F        C+    I       R  +   TL       
Sbjct: 47  DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL------- 99

Query: 248 SATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIR 307
                             S +          T V      +++ +   +     +     
Sbjct: 100 ------------DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 147

Query: 308 AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI-- 365
           +          +  D +  + L +D +   IYW DS    +  +      KG  +  +  
Sbjct: 148 SSYD-----TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFR 198

Query: 366 SDERRIEALDIDPVDEIIYWVDSYDRN-IRRSFM 398
            +  +  A+ +DPV   +YW D      I++  +
Sbjct: 199 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 43/297 (14%), Positives = 80/297 (26%), Gaps = 50/297 (16%)

Query: 136 PNPCSQ-SPCSHLCLVIPGGYQCACPENAT-------PKLPGVAEIRCSAAVERPRPLPR 187
            + C     CS LC+ + GGY+C C E           K  G             R +  
Sbjct: 40  IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 99

Query: 188 VCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALV 247
                   +        L      +       +   I          +     ++   + 
Sbjct: 100 DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159

Query: 248 SATVYYV-WRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEI 306
           +     V W       T  S L T SV+  +G   +              T+   NG + 
Sbjct: 160 APDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRK--------------TLFRENGSKP 204

Query: 307 RAYETH-KRRF---------------------RDVI--SDERRIEALDIDPVDEIIYWVD 342
           RA        F                        +   + +    + +D +   +YWVD
Sbjct: 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 264

Query: 343 SYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML 399
           S   +I    +    +  +           +L +   ++ ++W D  +  I  +  L
Sbjct: 265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  166 bits (420), Expect = 2e-47
 Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W + G +PRIE++ MDGS RR +  T +  P GL++D A    +YWVD+K + IE   
Sbjct: 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERAN 274

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            DG +R+ ++  S  L HP ++ VFE+++YW    T S+   +KF      +I   L  P
Sbjct: 275 LDGSHRKAVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 332

Query: 121 SGVKAYHAQRYNTSA-PNPCSQSPCSHLCLVIPGGYQCACPEN 162
             +   H QR          +   C+HLCL     Y CACP  
Sbjct: 333 MDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTG 375

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 80.2 bits (197), Expect = 1e-16
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           +FW++     RI  A ++GS+   +V TG+  P GL+VD   D  LYW DS  + IE   
Sbjct: 130 VFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVAN 187

Query: 61  HDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDL 117
            DG +R+ +L     L+ P  I+L   E  IYW    +T  +      G G  ++    L
Sbjct: 188 LDGAHRKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 245

Query: 118 VNPSGV 123
             P+G+
Sbjct: 246 FWPNGL 251

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 46/270 (17%), Positives = 75/270 (27%), Gaps = 49/270 (18%)

Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
             C+ +   C+  C +I G  QC C         G          E  R    V +C   
Sbjct: 4   ENCNVNNGGCAQKCQMIRGAVQCTCH-------TG------YRLTEDGRTCQDVNECAEE 50

Query: 195 GMCA---ESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATV 251
           G C+    +  G   C C   +            +     RS   +              
Sbjct: 51  GYCSQGCTNSEGAFQCWCEAGY------------ELRPDRRSCKALGP------------ 86

Query: 252 YYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYET 311
             V                   +          A  F++   L      +    +RA   
Sbjct: 87  EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146

Query: 312 HKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--SDER 369
                  V +       L +D V + +YW DS    I  + +     G  + V+      
Sbjct: 147 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL----DGAHRKVLLWQSLE 202

Query: 370 RIEALDIDPVDEIIYWVDSYDRN-IRRSFM 398
           +  A+ + P++  IYW D  +   I  S M
Sbjct: 203 KPRAIALHPMEGTIYWTDWGNTPRIEASSM 232

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 16  WMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDK 75
            +      +L++  + +   L      +   +W D  L+ I     +G N + ++S    
Sbjct: 101 VLPHRSEYTLLLNNLENAIALDFHHRRELV-FWSDVTLDRILRANLNGSNVEEVVSTG-- 157

Query: 76  LQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
           L+ P  +++D   + +YW    T  +   +  G    VL+ + L  P  +
Sbjct: 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  153 bits (387), Expect = 3e-43
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D      LYWVDSKL++I S+ 
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL-SGRLYWVDSKLHSISSID 192

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252

Query: 121 SGVKAYHAQRYNTSAPNPCSQ-----SPCSHLCLVIP------GGYQCACPEN 162
             +  +H         N C +       C +LCL  P        + CACP+ 
Sbjct: 253 EDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 304

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 77.0 bits (189), Expect = 7e-16
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)

Query: 1   MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
           ++W++      I S  +D +H  S    ++   ++ P GL+VD    + +YW DS L T+
Sbjct: 44  IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV 101

Query: 57  ESVRHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLI 113
                 G  R+T+   +     P  I +D     +YW        + K    G  +  L+
Sbjct: 102 SVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159

Query: 114 SKDLVNPSGV 123
           ++++  P+G+
Sbjct: 160 TENIQWPNGI 169

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
           + ++N  E+R     +  +  +I + R + ALD +     IYW D   R I  + +  A 
Sbjct: 4   LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63

Query: 358 KGQVQAVISDE--RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
                  +     +  + L +D +   IYW DS    +  +
Sbjct: 64  GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 11  RIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTIL 70
            +    +D S   SL+   +R+   L  + A  + +YW D     I S + D  +  +  
Sbjct: 11  EVRKMTLDRSEYTSLI-PNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSY 68

Query: 71  SG--SDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
               S  +Q P  +++D   +NIYW     G++   D  G     L  ++   P  +
Sbjct: 69  DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 125

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 338 IYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSF 397
           +++ + ++  +R+   +   + +  ++I + R + ALD +     IYW D   R I  + 
Sbjct: 4   LFFTNRHE--VRK---MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58

Query: 398 M 398
           +
Sbjct: 59  L 59

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  147 bits (372), Expect = 8e-41
 Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W + G +PRIE++ MDGS RR +  T +  P GL++D A    +YWVD+K + IE   
Sbjct: 173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR-MYWVDAKHHVIERAN 231

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            DG +R+ ++S    L HP ++ VFE+++YW    T S+   +KF      +I   L  P
Sbjct: 232 LDGSHRKAVISQG--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 289

Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIPGGYQCACPEN 162
             +   H QR      N C  +   C+HLCL     Y CACP  
Sbjct: 290 MDIHTLHPQRQPAG-KNRCGDNNGGCTHLCLPSGQNYTCACPTG 332

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 78.0 bits (191), Expect = 4e-16
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 7/127 (5%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           +FW++     RI  A ++GS+   +V TG+  P GL+VD  +   LYW DS  + IE   
Sbjct: 87  VFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVD-WVHDKLYWTDSGTSRIEVAN 144

Query: 61  HDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDL 117
            DG +R+ +L  S  L+ P  I+L   E  IYW    +T  +      G G  ++    L
Sbjct: 145 LDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 202

Query: 118 VNPSGVK 124
             P+G+ 
Sbjct: 203 FWPNGLT 209

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 12  IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
           I           +L++  + +   L      +  ++W D  L+ I     +G N + ++S
Sbjct: 55  IRQVLPHR-SEYTLLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEEVVS 112

Query: 72  GSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
              +    +++D   + +YW    T  +   +  G    VL+ + L  P  +
Sbjct: 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 164

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 52.6 bits (125), Expect = 1e-07
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 295 GLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML 354
              ++++N  +IR    H+  +  ++++     ALD     E+++W D     I R+ + 
Sbjct: 44  EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 103

Query: 355 EAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
            +   +V  V +       L +D V + +YW DS    I  +
Sbjct: 104 GSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 50/293 (17%), Positives = 86/293 (29%), Gaps = 55/293 (18%)

Query: 137 NPCSQ-SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
           N C++   CS  C    G +Q                                C C+ G 
Sbjct: 2   NECAEEGYCSQGCTNSEGAFQ--------------------------------CWCEAGY 29

Query: 196 MCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVW 255
                     +C            N   I Q L          TLLL     +  + +  
Sbjct: 30  ELRPDRR---SCKALGPEPVLLFANRIDIRQVLPHRSE----YTLLLNNLENAIALDFHH 82

Query: 256 RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI------VY---SNGPEI 306
           R+     +  +       +   G+NVE    +    +  GL +      +Y   S    I
Sbjct: 83  RRELVFWSDVTLDRILRANL-NGSNVEEV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRI 140

Query: 307 RAYETHKRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDR-NIRRSFMLEAQKGQVQAV 364
                     + ++     +  A+ + P++  IYW D  +   I  S M     G+    
Sbjct: 141 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM--DGSGRRIIA 198

Query: 365 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGV 417
            +       L ID     +YWVD+    I R+ +  + +  V +    H   +
Sbjct: 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 251

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  146 bits (370), Expect = 8e-41
 Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ + +  P GL++D   +  LYW D+KLN I    
Sbjct: 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 194

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            DG NRQ ++ GS  L HP +L +FE+ +YW    T S+   +K+       I  D+ +P
Sbjct: 195 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSP 252

Query: 121 SGVKAYHAQRY-NTSAPNPCSQSPCSHLCLVIP--GGYQCACPEN 162
             + A+  QR  N + P       CSHLCL+ P    YQCACP  
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG 297

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 80.5 bits (198), Expect = 6e-17
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 1   MFWAETGASPRIESAWMDGSHRRS-LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
           ++W++      I+    + +     +V++G+  P GL+ D   +  LYW DS+ N IE  
Sbjct: 49  IYWSDVS-EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVS 106

Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNIYWL-ARDTGSLYKQDKFGRGVPVLISKDLV 118
             DG  R+ +          I+LD     +YW    +   + +    G    ++I+ ++ 
Sbjct: 107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 166

Query: 119 NPSGV 123
            P+G+
Sbjct: 167 WPNGL 171

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 298 IVYSNGPEIRAY--ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
           ++Y+N  ++R       K     V+       A+D      +IYW D  +  I+R+   +
Sbjct: 7   LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66

Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
            +  Q   V+S     + L  D + E +YW DS    I  S
Sbjct: 67  TESVQN-VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 106

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 68.2 bits (166), Expect = 8e-13
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 18  DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
           +G    ++V+ G+     +    +    +YW D     I+    +       +  S  L 
Sbjct: 22  NGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL 79

Query: 78  HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
            P  ++ D     +YW   +T  +   +  G    VL  ++L  P  +
Sbjct: 80  SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 127

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 345 DRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG 404
            R++R        K     V+       A+D      +IYW D  +  I+R+   + +  
Sbjct: 12  RRDLRL-VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 70

Query: 405 QV 406
           Q 
Sbjct: 71  QN 72

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  143 bits (361), Expect = 1e-37
 Identities = 89/410 (21%), Positives = 144/410 (35%), Gaps = 56/410 (13%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W E G  P+I+ A MDGS R +LV   V    GL++D A    LYW D   N IES  
Sbjct: 137 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 194

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
             G NR+ I      L HP  L  +++ IYW      S+ + +K       +I   L   
Sbjct: 195 MLGLNREVIADD---LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 251

Query: 121 SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIP-GGYQCACPENATPKLPGVAEIRCSAAV 179
             +  +H+ R +       S   CSHLCL +P GG+ C CP +                 
Sbjct: 252 MDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAH----------------- 294

Query: 180 ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPT 239
                  R C      +    +    +   R         +       L   R++ Y P 
Sbjct: 295 YSLNADNRTCSAPTTFLLFSQK----SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDP- 349

Query: 240 LLLLLALVSATVYY-------VWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGA 292
                  +   +Y+       + + +  G    + + +   S          +    +  
Sbjct: 350 -------LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSR- 401

Query: 293 SLGLTIVY---SNGPEIRAYETHKRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDRN- 347
                 +Y        I       R    V+  E  R  A+ ++P    +Y+ +  +R+ 
Sbjct: 402 -----YIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP 456

Query: 348 -IRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
            I R+ +      +     S   +  AL +D     ++W DS  R I  S
Sbjct: 457 KIERAAL--DGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESS 504

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  133 bits (336), Expect = 3e-34
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 1   MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
           M++      SP+IE A +DG+ R  L  +G+  P  L++D+     L+W DS L  IES 
Sbjct: 446 MYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSR-LGKLFWADSDLRRIESS 504

Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVN 119
              G NR  +      +  P+ L VFEN +YW+ +    + K D  GR     +   +  
Sbjct: 505 DLSGANRIVLEDS--NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 562

Query: 120 PSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIP-GGYQCACPEN 162
            S + A           +PC+Q    CSH+CLV   G  +C+CP +
Sbjct: 563 LSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMH 608

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 85.6 bits (211), Expect = 4e-18
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W +      I  A+M+GS    +V  G+ +P G++VD    + LYW D+  N IE  +
Sbjct: 51  IYWTDISL-KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSK 108

Query: 61  HDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDL 117
            DG++RQ ++     L  P  ++LD  E  +YW        + +    G     L+  ++
Sbjct: 109 LDGQHRQVLVWKD--LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NV 165

Query: 118 VNPSGV 123
              +G+
Sbjct: 166 GRANGL 171

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 72.5 bits (177), Expect = 7e-14
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 11  RIESAWMDGSHRRSLV-MTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTI 69
            I    ++ ++    + +TGV+  + L  D   D+ +YW D  L TI     +G   + +
Sbjct: 16  DIRRISLETNNNNVAIPLTGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHV 74

Query: 70  LSGSDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
           +     L +P  +++D    N+YW    T  +      G+   VL+ KDL +P  +
Sbjct: 75  VEFG--LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL 128

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 298 IVYSNGPEIRAYETHKRRFRDVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
           +++S   +IR            I  +  +   ALD D  D  IYW D   + I R+FM  
Sbjct: 9   LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68

Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
           +    V  V       E + +D + + +YW D+    I  S
Sbjct: 69  SALEHV--VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS 107

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 297 TIVYSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
           T +    P+I RA      R     S   +  AL +D     ++W DS  R I  S +  
Sbjct: 449 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS- 507

Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
              G  + V+ D   ++ + +   +  +YW+D   + I +
Sbjct: 508 ---GANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEK 544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 330 DIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSY 389
           +    +  + +    D  IRR   LE     V   ++  +   ALD D  D  IYW D  
Sbjct: 1   ETGVPEAFLLFSRRAD--IRR-ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS 57

Query: 390 DRNIRRSFM 398
            + I R+FM
Sbjct: 58  LKTISRAFM 66

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  138 bits (347), Expect = 1e-35
 Identities = 91/429 (21%), Positives = 147/429 (34%), Gaps = 54/429 (12%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G  P+IE A MDGS R  ++ + +  P GL++D   +  LYW D+KLN I    
Sbjct: 141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 199

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            DG NRQ ++ GS  L HP +L +FE+ +YW    T S+   +K+       I  D+ +P
Sbjct: 200 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSP 257

Query: 121 SGVKAYHAQRYNTSAPNPC-SQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV 179
             + A+  QR   +          CSHLCL+ P                           
Sbjct: 258 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFY---------------------- 295

Query: 180 ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPT 239
                    C C  G         +                 T + +          I  
Sbjct: 296 --------QCACPTGVKL----LENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVL 343

Query: 240 LLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI- 298
            L  +    A  Y       +  T     + +      G+  +F           G+ + 
Sbjct: 344 QLEDIRHAIAIDYDPVEGYIY-WTDDEVRAIRRSFID-GSGSQF-VVTAQIAHPDGIAVD 400

Query: 299 -----VY---SNGPEIRAYETHKRRFRDVIS-DERRIEALDIDPVDEIIYWVDSYDRN-I 348
                +Y   +    I     +    + +IS D     A+ +DP+   +YW D  +   I
Sbjct: 401 WVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKI 460

Query: 349 RRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQA 408
            R+ +      +V  V +       L +D  +  IYW D+    I         +  +  
Sbjct: 461 ERAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE 518

Query: 409 GASRHQNGV 417
               H  G 
Sbjct: 519 DKIPHIFGF 527

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  100 bits (250), Expect = 5e-23
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 43/203 (21%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDS-KLNTIESV 59
           ++W +TG   RIE   ++G+ R+ L+   +  P  + +D  + + +YW D  ++  IE  
Sbjct: 406 LYWTDTGTD-RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGY-MYWTDWGEIPKIERA 463

Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVN 119
             DG +R  +++ S    + ++LD  E  IYW    T  +   +  G G  VL+   + +
Sbjct: 464 ALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH 523

Query: 120 PSGV----------------------------------------KAYHAQRYNTSAPNPC 139
             G                                         KA +  R   S P   
Sbjct: 524 IFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAE 583

Query: 140 SQSPCSHLCLVIPGGYQCACPEN 162
               CSHLCL  P G +CACP  
Sbjct: 584 ENGGCSHLCLYRPQGLRCACPIG 606

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 82.6 bits (203), Expect = 5e-17
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 1   MFWAETGASPRIESAWMDGSHRRS-LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
           ++W++      I+    + +     +V++G+  P GL+ D   +  LYW DS+ N IE  
Sbjct: 54  IYWSDVS-EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVS 111

Query: 60  RHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWL-ARDTGSLYKQDKFGRGVPVLISKD 116
             DG  R+ +      L  P  I+LD     +YW    +   + +    G    ++I+ +
Sbjct: 112 NLDGSLRKVLFWQE--LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169

Query: 117 LVNPSGV 123
           +  P+G+
Sbjct: 170 IYWPNGL 176

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 298 IVYSNGPEIRAY--ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
           ++Y+N  ++R       K     V+       A+D      +IYW D  +  I+R+   +
Sbjct: 12  LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 71

Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
            +  Q   V+S     + L  D + E +YW DS    I  S
Sbjct: 72  TESVQN-VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 111

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 65.2 bits (158), Expect = 1e-11
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 18  DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
           +G    ++V+ G+     +    +    +YW D     I+    +       +  S  L 
Sbjct: 27  NGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL 84

Query: 78  HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
            P  ++ D     +YW   +T  +   +  G    VL  ++L  P  +
Sbjct: 85  SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 132

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  128 bits (323), Expect = 2e-34
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 1   MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
           ++W +    +P+IE++ MDG++RR L    +  P GL+ DA     L WVD+  +  E +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF-SSQLCWVDAGTHRAECL 194

Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLV 118
                 R+ +L G   LQ+P ++  +  N+Y+    T S+   D    + +         
Sbjct: 195 NPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251

Query: 119 NPSGVKAYHAQ 129
              G+    +Q
Sbjct: 252 RLYGITIALSQ 262

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           ++W +    P I  A + G    +++   +  P G+++D      ++W DS+L+ IE  +
Sbjct: 50  VYWTDIS-EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAK 107

Query: 61  HDGRNRQTILSGSDKLQHP--ISLDVFENNIYW--LARDTGSLYKQDKFGRGVPVLISKD 116
            DG  R+ +      L +P  I  D    N+YW    RD   +      G    +L   +
Sbjct: 108 MDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN 165

Query: 117 LVNPSGV 123
           L  P+G+
Sbjct: 166 LGLPNGL 172

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 12  IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
           +E   M  +  ++ +    +   GL+ D   D  +YW D    +I      G    TI+ 
Sbjct: 17  LERNTMKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIR 75

Query: 72  GSDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQ 129
               L  P  I+LD     I+W       +      G    VL    LVNP G+     +
Sbjct: 76  QD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133

Query: 130 RY 131
             
Sbjct: 134 GN 135

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 298 IVYSNGPEIR------AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 351
           ++++   +I                  +    + I  L  D VD+++YW D  + +I R+
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63

Query: 352 FMLEAQKGQVQAVISDE-RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
            +     G+   +I  +    E + +D +   I+W DS    I  +
Sbjct: 64  SL---HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 328 ALDIDPVDEIIYWVDSYDRN--IRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYW 385
            +  DPV   +YW D    N  I  S M      +      +      L  D     + W
Sbjct: 126 GIVTDPVRGNLYWTDWNRDNPKIETSHM--DGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183

Query: 386 VDSYDRNIRRSFM 398
           VD+          
Sbjct: 184 VDAGTHRAECLNP 196

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 6/100 (6%)

Query: 297 TIVYSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
           T    + P+I  ++     R      +      L  D     + WVD+            
Sbjct: 139 TDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP-- 196

Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
             +   + V+   +   A+      + +Y+ D    ++  
Sbjct: 197 -AQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIA 233

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 338 IYWVDSYD-RNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
           + +  +     +        +      +    + I  L  D VD+++YW D  + +I R+
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63

Query: 397 FM 398
            +
Sbjct: 64  SL 65

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 70.1 bits (171), Expect = 1e-13
 Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 10/113 (8%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           +++ +      I    ++  +   L    + H              Y        +  V+
Sbjct: 198 VYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYG-----SLIFYQRGGDNPALCVVK 252

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLI 113
           +DG   + +  G        +++V    +Y+    +   Y            +
Sbjct: 253 NDGTGFKELAKGE-----FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLN-TIESV 59
            F+     + ++                    P  L      D  +Y++D   +  I  V
Sbjct: 158 YFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD-----DTNVYYMDVNRDNAIVHV 212

Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNI-YWLARDTGSLYKQDKFGRGVPVLISKDLV 118
             +  N   +   + +       +V+ + I Y    D  +L      G G   L   +  
Sbjct: 213 NINNPNPVVLTEANIE-----HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFC 267

Query: 119 NPS 121
           N +
Sbjct: 268 NIN 270

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 14/125 (11%)

Query: 2   FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWV---DSKLNTIES 58
               +     +     +G     L       P      + + + +Y++        ++  
Sbjct: 80  QTFFSYDRNSLCRIKRNGHGSTVLD------PDPCIYASLIGNYIYYLHYDTQTATSLYR 133

Query: 59  VRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLV 118
           +R DG  ++ I +         + +  +   Y+     G LY+ D   +   +    +  
Sbjct: 134 IRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY 188

Query: 119 NPSGV 123
            P  +
Sbjct: 189 KPVVL 193

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 20/88 (22%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQ---C 191
           N C  +PC +   CL   G +QC C        PG   + C    +        C    C
Sbjct: 46  NECVSNPCQNDATCLDQIGEFQCICM-------PGYEGVHCEVNTDE-------CASSPC 91

Query: 192 QNGGMCAESETGDLTCNCRQDFAGTFCE 219
            + G C   +  +  C C   F G  C+
Sbjct: 92  LHNGRC-LDKINEFQCECPTGFTGHLCQ 118

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 20/90 (22%)

Query: 137 NPCSQ--SPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE--RPRPLPRVCQ 190
           + CS   +PC H   C+   G ++C C         G    RC   V      P      
Sbjct: 6   DECSLGANPCEHAGKCINTLGSFECQCL-------QGYTGPRCEIDVNECVSNP------ 52

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
           CQN   C   + G+  C C   + G  CE 
Sbjct: 53  CQNDATC-LDQIGEFQCICMPGYEGVHCEV 81

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 25/100 (25%)

Query: 138 PCSQSPCSH--LCL--VIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQ--- 190
            C  +PC +  +CL  +  G + C CP        G  +  CS+ VE             
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECP-------DGFTDPNCSSVVEVASDEEEPTSAGP 54

Query: 191 -----CQNGGMCAESETGDL------TCNCRQDFAGTFCE 219
                C NGG C  SE           C C + F G  C+
Sbjct: 55  CTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 27/99 (27%)

Query: 133 TSAPNPCSQSPCSH--LCLVIPG-------GYQCACPENATPKLPGVAEIRCSAAVERPR 183
            ++  PC+ +PC +   C +          GY C CP        G   I C   +    
Sbjct: 49  PTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP-------RGFNGIHCQHNINE-- 99

Query: 184 PLPRVCQ---CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
                C+   C+NGG+C      + +C C  +F G  C+
Sbjct: 100 -----CEVEPCKNGGIC-TDLVANYSCECPGEFMGRNCQ 132

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 15/86 (17%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQCQN 193
           + C  SPC +   C    G Y C C         G     C     +             
Sbjct: 43  DQCETSPCQNQGKCKDGLGEYTCTCL-------EGFEGKNCELFTRKLCSLDN----GDC 91

Query: 194 GGMCAESETGDLTCNCRQDFAGTFCE 219
              C E +   + C+C + +      
Sbjct: 92  DQFCHEEQ-NSVVCSCARGYTLADNG 116

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 15/83 (18%)

Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
             C +  CS+                                 ++    P    CQN G 
Sbjct: 10  RECMEETCSYEE---AREVFEDSD-------KTNEFWNKYKDGDQCETSP----CQNQGK 55

Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
           C +   G+ TC C + F G  CE
Sbjct: 56  C-KDGLGEYTCTCLEGFEGKNCE 77

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 10/61 (16%), Positives = 12/61 (19%), Gaps = 13/61 (21%)

Query: 139 CSQSPC--SHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
           CS         C        C+C         G        A     P P    C    +
Sbjct: 84  CSLDNGDCDQFCHEEQNSVVCSCA-------RGYTLADNGKACIPTGPYP----CGKQTL 132

Query: 197 C 197
            
Sbjct: 133 E 133

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 16/88 (18%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
           + C+ SPC +   C      Y C C        P      C    +           +NG
Sbjct: 48  DQCASSPCQNGGSCKDQLQSYICFCL-------PAFEGRNCETHKDDQLICV----NENG 96

Query: 195 G---MCAESETGDLTCNCRQDFAGTFCE 219
           G    C++      +C C + ++     
Sbjct: 97  GCEQYCSDHTGTKRSCRCHEGYSLLADG 124

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 16/86 (18%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQCQN 193
           + C  +PC +  LC      Y+C C         G     C        +        + 
Sbjct: 49  DQCEPNPCLNGGLCKDDINSYECWCQ-------VGFEGKNCELDATCNIKN------GRC 95

Query: 194 GGMCAESETGDLTCNCRQDFAGTFCE 219
              C       + C+C   +     +
Sbjct: 96  KQFCKTGADSKVLCSCTTGYRLAPDQ 121

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 21/88 (23%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV---ERPRPLPRVCQC 191
           + C   P     +C      +QC C  N      G     C   +      +P      C
Sbjct: 97  DKCIPHPGCVHGICN---EPWQCLCETNWG----GQ---LCDKDLNYCGTHQP------C 140

Query: 192 QNGGMCAESETGDLTCNCRQDFAGTFCE 219
            NGG C+ +      C+C + ++G  CE
Sbjct: 141 LNGGTCSNTGPDKYQCSCPEGYSGPNCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 17/83 (20%)

Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
             C                   C         G     C+ A+ R             G 
Sbjct: 32  KFCRPRDDFFGHYACDQNGNKTCM-------EGWMGPECNRAICRQGC------SPKHGS 78

Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
           C         C C+  + G +C+
Sbjct: 79  C----KLPGDCRCQYGWQGLYCD 97

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 15/95 (15%)

Query: 130 RYNTSAPNPCS-QSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPR- 187
            +  +    CS Q  C      +P  Y C+C         G   ++C+ A       P  
Sbjct: 237 TFGRTCKERCSGQEGCKSYVFCLPDPYGCSCA-------TGWKGLQCNEACHPGFYGPDC 289

Query: 188 --VCQCQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
              C C NG MC         C C   + G  CE 
Sbjct: 290 KLRCSCNNGEMC----DRFQGCLCSPGWQGLQCER 320

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 69/497 (13%), Positives = 130/497 (26%), Gaps = 170/497 (34%)

Query: 17  MDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVD-SKLNTIESV---------------- 59
           + GS +  + +          V   MD  ++W++    N+ E+V                
Sbjct: 158 VLGSGKTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 60  ---RHDGRNRQTILSGSDKL-------QHPISLDVFENNIYWLARDTGSLYKQDKFGRGV 109
               H    +  I S   +L        +   L V  N       +  +    + F    
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQ---NAKAW---NAFNLSC 266

Query: 110 PVLI-SKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLV-IPGGYQCACPENATPKL 167
            +L+ ++       + A                   +H+ L           P+     L
Sbjct: 267 KILLTTRFKQVTDFLSAATT----------------THISLDHHSMTLT---PDEVKSLL 307

Query: 168 PGVAEIRCSAAVERPRPLPR-VCQC--QNGGMCAESETGDLTCNCRQDFAGTFCENYTGI 224
               + R          LPR V     +   + AES          +D   T+ +N+  +
Sbjct: 308 LKYLDCRPQD-------LPREVLTTNPRRLSIIAES---------IRDGLATW-DNWKHV 350

Query: 225 G---QGLTLGRSL----------LY-----------IPTLLLLLALVSATVYYVWRKRPF 260
                   +  SL          ++           IPT+LL L         +W     
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---------IWFDVIK 401

Query: 261 GKTMGSA--LSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKR---R 315
              M     L   S+  +Q        P         + +      E   Y  H+     
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIP--------SIYLELKVKLENE-YALHRSIVDH 452

Query: 316 FRDVISDERRIEALDIDPVDEIIYWVDSY------------------------DRNIRRS 351
           +   I      + L    +D+  Y    +                        ++ IR  
Sbjct: 453 YN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 352 FMLEAQKGQVQAVISD----ERRIEALDIDP-----VDEIIYWVDSYDRNIRRS------ 396
                  G +   +      +  I   D DP     V+ I+ ++   + N+  S      
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 397 -FMLEAQKGQVQAGASR 412
              L A+   +   A +
Sbjct: 569 RIALMAEDEAIFEEAHK 585

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 23/102 (22%)

Query: 122 GVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEI---RCSAA 178
            V     +       +     P             C C             +    CS  
Sbjct: 3   QVICRDEKTQMIYQQHQSWLRPVLRS----NRVEYCWCN----SGRAQCHSVPVKSCSE- 53

Query: 179 VERPRPLPRVCQCQNGGMCAESE-TGDLTCNCRQDFAGTFCE 219
                      +C NGG C ++    D  C C + FAG  CE
Sbjct: 54  ----------PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 23/88 (26%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
                + C +   C       +C CP       PG+   +C  + + P+P      C+NG
Sbjct: 212 KANCSTTCFNGGTCF---YPGKCICP-------PGLEGEQCEIS-KCPQP------CRNG 254

Query: 195 GMCAESETGDLTCNCRQDFAGTFCENYT 222
           G C     G   C C + + G  C    
Sbjct: 255 GKC----IGKSKCKCSKGYQGDLCSKPV 278

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 25/89 (28%)

Query: 139 CSQSPCSHLCLVIPGG-----YQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQN 193
           C Q+ C   C    GG       C CP        G     C  A+          +C N
Sbjct: 146 CQQAECPGGCR--NGGFCNERRICECP-------DGFHGPHCEKAL-------CTPRCMN 189

Query: 194 GGMCAESETGDLTCNCRQDFAGTFCENYT 222
           GG+C         C C   F G  C+   
Sbjct: 190 GGLCVTPGF----CICPPGFYGVNCDKAN 214

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 24/85 (28%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
           + C   PC +   C+   G  +C C         G     CS  V           C   
Sbjct: 245 SKCP-QPCRNGGKCI---GKSKCKCS-------KGYQGDLCSKPVCE-------PGCGAH 286

Query: 195 GMCAESETGDLTCNCRQDFAGTFCE 219
           G C E       C C++ + G  C 
Sbjct: 287 GTCHEPNK----CQCQEGWHGRHCN 307

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 10/87 (11%), Positives = 16/87 (18%), Gaps = 16/87 (18%)

Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
           + +      C   C        C+C         G        A     P P    C   
Sbjct: 85  SLDNGD---CDQFCHEEQNSVVCSCA-------RGYTLADNGKACIPTGPYP----CGKQ 130

Query: 195 GMCAESETGDLTCNCRQDFA-GTFCEN 220
            +    +            A  +    
Sbjct: 131 TLE-RRKRSVAQATSSSGEAPDSITWK 156

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 15/83 (18%)

Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
             C +  CS+                                 ++    P    CQN G 
Sbjct: 10  RECMEETCSYEEA---REVFEDSD-------KTNEFWNKYKDGDQCETSP----CQNQGK 55

Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
           C +   G+ TC C + F G  CE
Sbjct: 56  C-KDGLGEYTCTCLEGFEGKNCE 77

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 22/116 (18%), Positives = 28/116 (24%), Gaps = 31/116 (26%)

Query: 131 YNTSAPNPCSQSPCSHL---CLVIPGGYQCACPENATPK-----LPGVAEIRCSAAVERP 182
           Y  S      +  C+     C+       C C  N T                S     P
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLP 345

Query: 183 RPLPRVCQC-------------------QNGGMCAESETGDLTCNCRQDFAGTFCE 219
            P      C                   QNGG C      ++ C C   + G  CE
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTC----HNNVRCLCPAAYTGILCE 397

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 137 NPCSQSPCSHLCLVIPGGYQCAC 159
           + CS++ C+ LC+  PGGY C C
Sbjct: 46  DECSENMCAQLCVNYPGGYTCYC 68

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 137 NPCSQSPCSHLCLVI-PGGYQCACPE 161
           +PC ++ C + C  +    Y C C E
Sbjct: 5   DPCFRANCEYQCQPLDQTSYLCVCAE 30

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 11/84 (13%)

Query: 137 NPCSQSPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
           +PC+   C H  C+   G + C C         G     C   V        +       
Sbjct: 16  HPCASLCCGHGTCIDGIGSFSCDCR-------SGWEGRFCQREVSFLN--CSLDNGGCTH 66

Query: 196 MCAESETGDLTCNCRQDFAGTFCE 219
            C E   G   C+C   +      
Sbjct: 67  YCLEEV-GWRRCSCAPGYKLGDDL 89

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 144 CSHLCLVIPGGYQCACPE 161
           C   C       +C+C  
Sbjct: 8   CDQFCREERSEVRCSCAH 25

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
           N C  +   CS++C  +  GY+C CP+
Sbjct: 30  NECLDNNGGCSYVCNDLKIGYECLCPD 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.97
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.96
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.94
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.92
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.91
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.73
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.67
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.27
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.21
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.03
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.98
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.97
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	98.97
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	98.95
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.94
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.93
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.92
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.84
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.81
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.79
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.77
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.76
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.75
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.74
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.74
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.69
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.67
2vh0_B	134	Activated factor XA light chain; serine protease,	98.66
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.65
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.64
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.63
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.63
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.58
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.54
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.5
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.5
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.5
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.44
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.41
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.36
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.35
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.33
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.33
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.31
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.3
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.24
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.22
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.21
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.2
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.1
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.1
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.1
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.01
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.01
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.01
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.98
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.96
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.94
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.91
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.86
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.83
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.81
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.77
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.76
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	97.76
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.71
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.68
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.67
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.63
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.61
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.61
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.56
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.5
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.49
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.48
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.47
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.44
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.42
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.38
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.35
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.32
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.31
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.3
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.24
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.23
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.22
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	97.18
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.15
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.13
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.1
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.09
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.09
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	97.07
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.07
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	97.05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.04
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.04
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.03
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.02
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.0
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	96.96
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.95
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.92
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.91
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.86
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	96.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.68
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.64
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.58
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	96.53
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.51
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.51
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.5
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	96.5
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.47
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	96.41
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	96.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.25
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	96.24
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.16
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.15
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.13
2vh0_B	134	Activated factor XA light chain; serine protease,	96.12
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	95.9
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	95.86
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	95.81
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	95.8
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.68
1szb_A	170	Mannose binding lectin-associated serine protease-	95.66
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	95.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.51
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.4
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	95.35
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.32
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	95.31
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	95.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.16
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.12
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	95.1
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	95.01
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	94.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.92
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	94.89
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	94.67
1nzi_A	159	Complement C1S component; calcium, innate immunity	94.5
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	94.47
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	94.4
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	94.31
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	94.24
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	94.22
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	93.93
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	93.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.83
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	93.74
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	93.68
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	93.6
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	93.45
1ob1_C	99	Major merozoite surface protein; immune system, im	93.18
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.08
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	92.96
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	92.86
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	92.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	92.5
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	92.21
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	91.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	91.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	91.43
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	91.15
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	90.84
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	90.76
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	90.7
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	90.31
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	90.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	90.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	90.04
2wph_E	59	Coagulation factor IXA light chain; serine proteas	90.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	89.94
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	89.82
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	89.77
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.5
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	89.38
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	89.2
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	89.11
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	88.73
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	88.67
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	88.47
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	88.08
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	87.87
1szb_A	170	Mannose binding lectin-associated serine protease-	86.59
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	86.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	86.53
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	86.33
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	85.7
1nzi_A	159	Complement C1S component; calcium, innate immunity	85.64
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.4
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	85.15
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	84.44
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	83.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	83.5
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	83.22
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	83.04
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.22
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	81.76
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	81.73
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	80.48
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	80.46
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	80.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	80.38
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	80.37

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=9.6e-49  Score=412.79  Aligned_cols=296  Identities=32%  Similarity=0.585  Sum_probs=248.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      ||||||++.++|+|++|||+.+++++.+.+.+|+|||+|+.++ +|||+|.+.++|+++++||+++++++.+  .+.+|+
T Consensus       141 ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~-~LY~aD~~~~~I~~~~~dG~~~~~~~~~--~~~~P~  217 (619)
T 3s94_A          141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPF  217 (619)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT-EEEEEETTTCCEEEESSSCCEEC-----------CC
T ss_pred             EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC-EEEEEeCCCCeEEEecCCCCccEEEEeC--CCCCce
Confidence            7999999888999999999999999988899999999999999 9999999999999999999999998886  589999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC--CCCCCccccCC--Ccce
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIP--GGYQ  156 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~--~~C~~~C~~~~--~~~~  156 (428)
                      +|++++++||||||.+++|++++++++....++..+...|.+|+++|+.+|+. ..|+|..  .+|+|.|++.+  .+|+
T Consensus       218 gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~-~~n~C~~~ng~Cs~lCl~~~~~~~~~  296 (619)
T 3s94_A          218 ALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN-ATNPCGIDNGGCSHLCLMSPVKPFYQ  296 (619)
T ss_dssp             CEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCC-CCCTTTTTGGGCSSEEEECSSTTSEE
T ss_pred             EEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCC-ccccccCCCCcccceEECCCCCCCce
Confidence            99999999999999999999999987777777888888999999999999985 7899985  48999999988  4799


Q ss_pred             ecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHH
Q psy951          157 CACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLY  236 (428)
Q Consensus       157 C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~  236 (428)
                      |.||+|| .+.++  +++|.+..                                                         
T Consensus       297 C~C~~g~-~l~~d--~~~C~~~~---------------------------------------------------------  316 (619)
T 3s94_A          297 CACPTGV-KLLEN--GKTCKDGA---------------------------------------------------------  316 (619)
T ss_dssp             EECCTTC-CBCTT--SSCBCSSC---------------------------------------------------------
T ss_pred             EeCCchh-eeccc--CcccCCCC---------------------------------------------------------
Confidence            9999999 66543  23333200                                                         


Q ss_pred             HHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCccce
Q psy951          237 IPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRF  316 (428)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  316 (428)
                                                                                ..-++|++..+|+.++++..++
T Consensus       317 ----------------------------------------------------------~~~Ll~~~~~~i~~i~l~~~~~  338 (619)
T 3s94_A          317 ----------------------------------------------------------TELLLLARRTDLRRISLDTPDF  338 (619)
T ss_dssp             ----------------------------------------------------------SEEEEEEESSCEEEEESSSTTC
T ss_pred             ----------------------------------------------------------ceEEEEEcccceEEEecCCCcc
Confidence                                                                      0124556666777777776665


Q ss_pred             eec---cccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe-ccccceeeeeeccCCeEEEEeCCCCc
Q psy951          317 RDV---ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS-DERRIEALDIDPVDEIIYWVDSYDRN  392 (428)
Q Consensus       317 ~~~---i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~~~~~lYwtd~~~~~  392 (428)
                      ..+   +.++.+|.|||||+.+++|||+|...++|+|+.++|+   ..+.++. ++..|+||||||++++|||||++.++
T Consensus       339 ~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~  415 (619)
T 3s94_A          339 TDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDR  415 (619)
T ss_dssp             CCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             ceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---ccEEEEECCCCCcCceEEecccCcEEEEeCCCCc
Confidence            543   3788999999999999999999999999999999993   3555554 89999999999999999999999999


Q ss_pred             EEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          393 IRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       393 I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      |++++++|+.+++|+.    +.+..|++||++-
T Consensus       416 I~v~~~~G~~~~~l~~----~~l~~P~~iavdp  444 (619)
T 3s94_A          416 IEVTRLNGTMRKILIS----EDLEEPRAIVLDP  444 (619)
T ss_dssp             EEEEETTSCSCEEEEC----TTCCSEEEEEEET
T ss_pred             EEEEeCCCCeEEEEEE----CCCCCeeeEEEEc
Confidence            9999999999999984    4578899999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=3.5e-48  Score=408.97  Aligned_cols=293  Identities=31%  Similarity=0.533  Sum_probs=246.2

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      ||||||+..++|+|++|||+.+++++. ++.+|+||++|+.++ +|||+|.+.++|+++++||++++++..   .+.+|+
T Consensus       137 lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~-~LY~aD~~~~~I~~~d~dG~~~~v~~~---~l~~P~  211 (628)
T 4a0p_A          137 MYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKR-RLYWTDLDTNLIESSNMLGLNREVIAD---DLPHPF  211 (628)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEE---CCSCEE
T ss_pred             EEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccC-EEEEEECCCCEEEEEcCCCCceEEeec---cCCCce
Confidence            799999977899999999999999875 799999999999999 999999999999999999999976655   488999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC--CCCCCccccCC-Cccee
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIP-GGYQC  157 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~--~~C~~~C~~~~-~~~~C  157 (428)
                      +|++++++||||||.+++|.++++..+...+++..++..|++|+++|+.+|+  ..|+|..  ++|+|.|++.+ ++|+|
T Consensus       212 glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C~~~ng~C~~~C~~~~~~~~~C  289 (628)
T 4a0p_A          212 GLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNECASSNGHCSHLCLAVPVGGFVC  289 (628)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTTTTTGGGCSSEEEEETTTEEEE
T ss_pred             EEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccc--cceEeccCCCCcchhhhcCCCCCeeE
Confidence            9999999999999999999999998776778888888899999999999887  6899985  48999999999 89999


Q ss_pred             cCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHHH
Q psy951          158 ACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYI  237 (428)
Q Consensus       158 ~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~~  237 (428)
                      .|++|| .+.++  +++|....                                                          
T Consensus       290 ~C~~g~-~l~~d--~~~C~~~~----------------------------------------------------------  308 (628)
T 4a0p_A          290 GCPAHY-SLNAD--NRTCSAPT----------------------------------------------------------  308 (628)
T ss_dssp             ECSTTC-EECTT--SSCEECCS----------------------------------------------------------
T ss_pred             EcCCCc-Eeccc--CCcCcccc----------------------------------------------------------
Confidence            999999 66543  24443210                                                          


Q ss_pred             HHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCccc--
Q psy951          238 PTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRR--  315 (428)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--  315 (428)
                                                                                ..++|++..+|+.+.+....  
T Consensus       309 ----------------------------------------------------------~~Ll~s~~~~i~~i~l~~~~~~  330 (628)
T 4a0p_A          309 ----------------------------------------------------------TFLLFSQKSAINRMVIDEQQSP  330 (628)
T ss_dssp             ----------------------------------------------------------SEEEEEETTEEEEECCCTTCCC
T ss_pred             ----------------------------------------------------------ceeeeeccceEEEEecccccCc
Confidence                                                                      02444555556555554332  


Q ss_pred             -eeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe------ccccceeeeeeccCCeEEEEeC
Q psy951          316 -FRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS------DERRIEALDIDPVDEIIYWVDS  388 (428)
Q Consensus       316 -~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~------~~~~p~glavD~~~~~lYwtd~  388 (428)
                       +...+.+++++.+||||+.+++|||+|...++|+|+.++|+  ...+++..      .+..|.||||||++++|||||+
T Consensus       331 ~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~--~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~  408 (628)
T 4a0p_A          331 DIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGS--QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE  408 (628)
T ss_dssp             CEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEC--------CCCEEEEEEETTTTEEEEEET
T ss_pred             eEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCC--CceEEEEcccccccccCCcceEEeeccCCeEEEEcC
Confidence             22345788999999999999999999999999999999994  33445544      5779999999999999999999


Q ss_pred             CCCcEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          389 YDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       389 ~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      +.+.|++++++|+.+++|+..    .+..|++||++-
T Consensus       409 ~~~~I~v~~~~G~~~~~l~~~----~l~~Pr~iavdp  441 (628)
T 4a0p_A          409 ATNVINVTRLDGRSVGVVLKG----EQDRPRAVVVNP  441 (628)
T ss_dssp             TTTEEEEEETTSCEEEEEEEC----TTCCEEEEEEET
T ss_pred             CCCEEEEEECCCCeEEEEEeC----CCCceeeEEEec
Confidence            999999999999999999855    456799999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.97  E-value=2.1e-30  Score=251.74  Aligned_cols=172  Identities=38%  Similarity=0.723  Sum_probs=152.7

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+||+..++|+|++|||+.+++++..++.+|+|||+|+.++ +|||+|...++|+++++||+++++++.+  .+.+|+
T Consensus       136 ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~  212 (318)
T 3sov_A          136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPF  212 (318)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEE
T ss_pred             EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCceEEEecC--CCCCce
Confidence            7999998777999999999999999888899999999999989 9999999999999999999999999976  589999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC--CCCCCccccCCC--cce
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIPG--GYQ  156 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~--~~C~~~C~~~~~--~~~  156 (428)
                      +|+++++.|||+||.+++|.++++..+.....+...+..|++|+++++.+|+. ..|+|..  .+|+|+|++.++  +|+
T Consensus       213 glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~~-~~n~C~~~ng~Cs~~C~~~~~~~~~~  291 (318)
T 3sov_A          213 ALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN-ATNPCGIDNGGCSHLCLMSPVKPFYQ  291 (318)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGGSCC-CCCTTTTTGGGCSSEEEECSSTTSEE
T ss_pred             EEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccccccc-cccccccCCCCcceEEecCCCCCCeE
Confidence            99999999999999999999999965555566777788999999999999885 6899975  389999999985  799


Q ss_pred             ecCCCCCCCCCCCCCCcccccCc
Q psy951          157 CACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       157 C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      |.||.|| .+.++  +++|.+..
T Consensus       292 C~C~~g~-~l~~d--~~~c~~~~  311 (318)
T 3sov_A          292 CACPTGV-KLLEN--GKTCKDGN  311 (318)
T ss_dssp             EECSTTC-CBCTT--SSCBCC--
T ss_pred             EECCCCC-EECCC--CCCCCCCC
Confidence            9999999 77654  57777643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.97  E-value=8.4e-30  Score=255.29  Aligned_cols=172  Identities=30%  Similarity=0.652  Sum_probs=154.0

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+||+..++|++++|||+.+++++..++.+|+|||||+.++ +|||+|...++|+++++||+++++++.....+.+|+
T Consensus       216 ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~  294 (400)
T 3p5b_L          216 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  294 (400)
T ss_dssp             EEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEE
T ss_pred             EEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCE
Confidence            7999999867999999999999999988899999999999999 999999999999999999999999988654689999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCC-----CCCCCCccccCCC--
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCS-----QSPCSHLCLVIPG--  153 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~-----~~~C~~~C~~~~~--  153 (428)
                      +|++++++|||+||.+++|.++++..+....++..++..|++|+++|+.+|+. ..|+|.     +++|+|+|++.+.  
T Consensus       295 gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~qp~-~~n~c~~~~~~ng~C~~lC~~~~~~~  373 (400)
T 3p5b_L          295 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQIN  373 (400)
T ss_dssp             EEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGSCC-CCCSSSSSSSGGGGCSSEEEECCCSS
T ss_pred             EEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccCCC-CCCccccccCCCcCcCCeecCCCccc
Confidence            99999999999999999999999776666677778889999999999999986 789996     3589999998874  


Q ss_pred             ----cceecCCCCCCCCCCCCCCccccc
Q psy951          154 ----GYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       154 ----~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                          +|+|.||.|| .+.++  +++|.+
T Consensus       374 ~~~~~~~C~C~~g~-~l~~d--~~~C~~  398 (400)
T 3p5b_L          374 PHSPKFTCACPDGM-LLARD--MRSCLT  398 (400)
T ss_dssp             TTCCSEEEECCTTC-EECTT--SSSEES
T ss_pred             CCCCCeeEECCCCC-EECCC--CCccCC
Confidence                7999999999 67654  577764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.96  E-value=3.2e-29  Score=243.23  Aligned_cols=171  Identities=30%  Similarity=0.657  Sum_probs=150.1

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|++..++|++++|||+.+++++...+.+|+||++|+.++ +|||+|...++|+++++||+++++++.....+.+|.
T Consensus       134 ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~  212 (316)
T 1ijq_A          134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  212 (316)
T ss_dssp             EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred             EEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCCceEEEeecCCccCCcE
Confidence            6999998756999999999999988887899999999999989 999999999999999999999999987533678999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCC-----CCCCccccCC---
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQS-----PCSHLCLVIP---  152 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~-----~C~~~C~~~~---  152 (428)
                      +|++++++|||+|+.+++|.++++..+.....+..++..|.+|+++++.+|+. ..|+|..+     +|+|+|++.|   
T Consensus       213 giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp~-~~n~C~~~~~~ng~Cs~~C~~~p~~~  291 (316)
T 1ijq_A          213 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQIN  291 (316)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCC-CCCTTSSSSSGGGGCSSEEEECCCCS
T ss_pred             EEEEECCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccccCCc-ccccccccccCCCCcCcccCCCcccc
Confidence            99999999999999999999999865555566667788999999999999886 77999853     7999999886   


Q ss_pred             ---CcceecCCCCCCCCCCCCCCcccc
Q psy951          153 ---GGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       153 ---~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                         ++|+|.||.|| .+.++  +++|.
T Consensus       292 ~~~~~~~C~C~~g~-~l~~d--~~~C~  315 (316)
T 1ijq_A          292 PHSPKFTCACPDGM-LLARD--MRSCL  315 (316)
T ss_dssp             TTCCSEEEECCTTC-EECTT--SSCEE
T ss_pred             CCCCCeEeeCCCCC-EECCC--CCccC
Confidence               47999999999 66654  46664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.96  E-value=8.1e-30  Score=268.55  Aligned_cols=168  Identities=33%  Similarity=0.644  Sum_probs=152.0

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      ||||||+..++|+|++|||+.+++++.+.+.+|+|||||+.++ +|||+|.+.++|+++++||+++++++..  .+.+|+
T Consensus       449 ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~-~LY~aD~~~~~I~~~~~dG~~~~~~~~~--~l~~P~  525 (619)
T 3s94_A          449 MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEG-KIYWGDAKTDKIEVMNTDGTGRRVLVED--KIPHIF  525 (619)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEESSSCCCEEEEEC--CCCSSC
T ss_pred             EEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCC-EEEEEECCCCEEEEEecCCCceEEEecc--CCCCcE
Confidence            7999999878999999999999999988899999999999999 9999999999999999999999999886  689999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC--CCCCCccccCCCcceec
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIPGGYQCA  158 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~--~~C~~~C~~~~~~~~C~  158 (428)
                      +|++++++||||||.+++|+++++.++ ..+++..++..|++|++++...|.  ..|+|..  ++|+|.|++.+++++|.
T Consensus       526 glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~~~~~~i~~~~~~~~~--~~~~C~~~ng~C~~~C~~~~~~~~C~  602 (619)
T 3s94_A          526 GFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQLPDLMGLKATNVHRVI--GSNPCAEENGGCSHLCLYRPQGLRCA  602 (619)
T ss_dssp             CEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECSCCCEEEEEEEESSCCC--CCCGGGSGGGGCSSEEEEETTEEEEE
T ss_pred             EEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecCCCCCceeeeccccccc--ccccCCCCCCChhHhhccCCCCeEEE
Confidence            999999999999999999999999976 456777788999999999887654  7899974  48999999999999999


Q ss_pred             CCCCCCCCCCCCCCccccc
Q psy951          159 CPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       159 C~~g~~~~~~~~~g~~C~~  177 (428)
                      |+.|| .+.++  +++|.+
T Consensus       603 C~~g~-~l~~d--~~~C~~  618 (619)
T 3s94_A          603 CPIGF-ELISD--MKTCIV  618 (619)
T ss_dssp             CCTTC-EECSS--TTCEEC
T ss_pred             CCCCC-EECCC--CCcCCC
Confidence            99999 66654  467754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.96  E-value=1.6e-29  Score=248.68  Aligned_cols=170  Identities=35%  Similarity=0.692  Sum_probs=152.0

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|++..++|+|++|||+.+++++..++.+|+|||+|+.++ +|||+|...++|+++++||+++++++..  .+.+|+
T Consensus       173 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~-~lY~aD~~~~~I~~~~~dG~~~~~~~~~--~~~~P~  249 (349)
T 3v64_C          173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANLDGSHRKAVISQ--GLPHPF  249 (349)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEE
T ss_pred             EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC-EEEEEECCCCEEEEEeCCCCceEEEEeC--CCCCce
Confidence            7999999856999999999999998888899999999999999 9999999999999999999999998876  589999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCC--CCCCccccCCCcceec
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQS--PCSHLCLVIPGGYQCA  158 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~--~C~~~C~~~~~~~~C~  158 (428)
                      +|++++++|||+||.+++|.++++..+....++...+..|++|+++|+.+|+. +.|+|..+  +|+|+|++.+.+++|.
T Consensus       250 giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp~-~~n~C~~~~g~C~~lCl~~~~~~~C~  328 (349)
T 3v64_C          250 AITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPA-GKNRCGDNNGGCTHLCLPSGQNYTCA  328 (349)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSCC-CCCTTTTGGGGCSSEEECCTTSCEEE
T ss_pred             EEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCcc-ccCcccCCCCCcccEeecCCCCCeeE
Confidence            99999999999999999999999765556666777889999999999999886 78999865  6999999999999999


Q ss_pred             CCCCCCCCCCCCCCcccccC
Q psy951          159 CPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       159 C~~g~~~~~~~~~g~~C~~~  178 (428)
                      ||.|| . .++  +++|...
T Consensus       329 C~~g~-~-~~d--~~~C~~~  344 (349)
T 3v64_C          329 CPTGF-R-KIN--SHACALE  344 (349)
T ss_dssp             CCTTE-E-EET--TTEEEEG
T ss_pred             CCCCC-c-CCC--CCcccch
Confidence            99999 4 332  4777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.96  E-value=7.2e-29  Score=266.82  Aligned_cols=173  Identities=30%  Similarity=0.650  Sum_probs=156.2

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+||+..++|++++|||+.+++++..++.+|+|||||+.++ +|||+|.+.++|+++++||+++++++.....+.+|+
T Consensus       528 LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~  606 (791)
T 3m0c_C          528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  606 (791)
T ss_dssp             EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred             EEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCC
Confidence            7999999867999999999999999998999999999999999 999999999999999999999999998655789999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC-----CCCCCccccCCC--
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ-----SPCSHLCLVIPG--  153 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~-----~~C~~~C~~~~~--  153 (428)
                      +|++++++|||+|+.+++|+++++..+....++..++..|++|+++|+.+|+. ..|+|..     ++|+|+|++.|.  
T Consensus       607 glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp~-~~N~C~~~~~~ng~CshlCl~~p~~~  685 (791)
T 3m0c_C          607 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQIN  685 (791)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCC-CCCTTTSSSSGGGGCSSEEEECCCCS
T ss_pred             EEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCCC-CCCcccccCCCCcCcCeeecCCCCcC
Confidence            99999999999999999999999876667777778899999999999999986 7899985     589999998874  


Q ss_pred             ----cceecCCCCCCCCCCCCCCcccccC
Q psy951          154 ----GYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       154 ----~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                          +|+|.||.|| .|.++  +++|...
T Consensus       686 ~~~~~~~C~Cp~g~-~L~~d--~~tC~~~  711 (791)
T 3m0c_C          686 PHSPKFTCACPDGM-LLARD--MRSCLTE  711 (791)
T ss_dssp             TTCCSEEEECCTTC-EECTT--SSCEEC-
T ss_pred             CCCCCceeECCCCC-EECCC--CCcCCCC
Confidence                7999999999 67654  5788653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.96  E-value=1e-28  Score=247.43  Aligned_cols=203  Identities=24%  Similarity=0.466  Sum_probs=164.0

Q ss_pred             CCCCCC--CCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCc
Q psy951          137 NPCSQS--PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       137 n~C~~~--~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~  214 (428)
                      |+|..+  .|++.|.+.+++|.|.|++|| .+.+   +..|++.++|..    +.+|.+  .|.+.. |+|.|.|++||.
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~-~~~~---~~~C~dideC~~----~~~C~~--~C~n~~-g~~~C~C~~g~~   69 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVA---QRRCEDIDECQD----PDTCSQ--LCVNLE-GGYKCQCEEGFQ   69 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTE-EECS---SSCEEECCCCST----TSSCSS--CCBCCS-SSCBCCCCTTCC
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCC-CcCC---CCcccCchhhhc----cCCCCC--ccCCCc-cceeeecccccc
Confidence            578765  588899999999999999999 5533   589998776542    235654  898887 689999999999


Q ss_pred             cC----ccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCC
Q psy951          215 GT----FCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNN  290 (428)
Q Consensus       215 G~----~Ce~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~  290 (428)
                      +.    .|....                                                                    
T Consensus        70 ~~~~~~~C~~~~--------------------------------------------------------------------   81 (400)
T 3p5b_L           70 LDPHTKACKAVG--------------------------------------------------------------------   81 (400)
T ss_dssp             CCTTTSSCCCST--------------------------------------------------------------------
T ss_pred             ccccccceeecc--------------------------------------------------------------------
Confidence            64    232110                                                                    


Q ss_pred             CCCCceeeeecCCcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccC-CceEEEEe-cc
Q psy951          291 GASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK-GQVQAVIS-DE  368 (428)
Q Consensus       291 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~-~~~~~i~~-~~  368 (428)
                         ....+++++..+|+.++++...+..+++++..|.+||+|+.+++|||+|...++|+|..++|... ...+.++. ++
T Consensus        82 ---~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           82 ---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             ---TSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             ---ccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence               01257789999999999999999999999999999999999999999999999999999998321 23455555 89


Q ss_pred             ccceeeeeeccCCeEEEEeCCCCcEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          369 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       369 ~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      ..|.||||||++++|||+|.+...|++++++|+.+++++..    .+..|++||+|-
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp  211 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDP  211 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEET
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEec
Confidence            99999999999999999999999999999999999999854    466688898874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.96  E-value=1.8e-28  Score=244.56  Aligned_cols=168  Identities=36%  Similarity=0.703  Sum_probs=150.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|++..++|+|++|||+.+++++..++.+|+|||+|+.++ +|||+|...++|+++++||+++++++..  .+.+|+
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~  292 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANLDGSHRKAVISQ--GLPHPF  292 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT-EEEEEETTTTEEEEECTTSCSCEEEECS--SCSSEE
T ss_pred             EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC-EEEEEECCCCEEEEEeCCCCeeEEEEEC--CCCCce
Confidence            7999999856999999999999999988899999999999889 9999999999999999999999998886  588999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCC--CCCCccccCCCcceec
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQS--PCSHLCLVIPGGYQCA  158 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~--~C~~~C~~~~~~~~C~  158 (428)
                      +|++++++|||+||.+++|.++++..+....++...+..|++|+++++.+|+. +.|+|..+  +|+|+|++.+.+|+|.
T Consensus       293 giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~-~~n~C~~~ng~C~~lCl~~~~~~~C~  371 (386)
T 3v65_B          293 AITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPA-GKNRCGDNNGGCTHLCLPSGQNYTCA  371 (386)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCC-CCCTTTTSCTTSSSEEECCSSSCEEE
T ss_pred             EEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcC-CcCccccCCCCCCceeeeCCCCCeeE
Confidence            99999999999999999999999765556667777889999999999999986 78999854  6999999999999999


Q ss_pred             CCCCCCCCCCCCCCcccc
Q psy951          159 CPENATPKLPGVAEIRCS  176 (428)
Q Consensus       159 C~~g~~~~~~~~~g~~C~  176 (428)
                      ||.|| . .++  +++|.
T Consensus       372 C~~g~-~-~~d--~~~C~  385 (386)
T 3v65_B          372 CPTGF-R-KIN--SHACA  385 (386)
T ss_dssp             CCTTC-B-CSS--SSCCB
T ss_pred             CCCCC-c-CCC--CCccC
Confidence            99999 4 332  46664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.96  E-value=5.7e-29  Score=262.36  Aligned_cols=170  Identities=31%  Similarity=0.625  Sum_probs=149.5

Q ss_pred             CEEEeeCCCC-eEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccce
Q psy951            1 MFWAETGASP-RIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHP   79 (428)
Q Consensus         1 lyWtd~~~~~-~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p   79 (428)
                      ||||||+..+ +|+|++|||+.+++++.+++.+|+|||||+.++ +|||+|.+.++|+++++||++|+++...  .+.+|
T Consensus       446 ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~-~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P  522 (628)
T 4a0p_A          446 MYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLG-KLFWADSDLRRIESSDLSGANRIVLEDS--NILQP  522 (628)
T ss_dssp             EEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECS--SCSCE
T ss_pred             EEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCC-EEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCc
Confidence            7999999875 999999999999999998999999999999999 9999999999999999999999999875  68999


Q ss_pred             eeeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC--CCCCCccccCCC-cce
Q psy951           80 ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIPG-GYQ  156 (428)
Q Consensus        80 ~~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~--~~C~~~C~~~~~-~~~  156 (428)
                      ++|++++++|||+||.+.+|++++|..+.....+...+..|++|.+++...+.....|+|..  ++|+|.|++.+. .++
T Consensus       523 ~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~~~C~~~~~~~~~  602 (628)
T 4a0p_A          523 VGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTR  602 (628)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCSSEEEECTTSCEE
T ss_pred             EEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcchhcccCCCCCee
Confidence            99999999999999999999999999666677777778889999998875433235799974  489999999884 689


Q ss_pred             ecCCCCCCCCCCCCCCcccc
Q psy951          157 CACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       157 C~C~~g~~~~~~~~~g~~C~  176 (428)
                      |.||.|| .+.++  +++|.
T Consensus       603 C~C~~g~-~l~~d--~~~~~  619 (628)
T 4a0p_A          603 CSCPMHL-VLLQD--ELSCG  619 (628)
T ss_dssp             EECCTTE-EECTT--SSCEE
T ss_pred             eeCCCCC-EECCC--CCcCC
Confidence            9999999 66654  46664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.96  E-value=1.5e-28  Score=245.06  Aligned_cols=203  Identities=21%  Similarity=0.409  Sum_probs=127.6

Q ss_pred             CCCCCCCC--CCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCC
Q psy951          135 APNPCSQS--PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQD  212 (428)
Q Consensus       135 ~~n~C~~~--~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~g  212 (428)
                      ..|+|..+  +|++.|.+..++|.|.|++|| .+.++  +..|.+.+++..    ..+|.++  |.+.. |+|.|.|++|
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~-~l~~~--~~~C~d~~eC~~----~~~C~~~--C~~~~-g~~~C~C~~g   71 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGY-RLTED--GRTCQDVNECAE----EGYCSQG--CTNSE-GAFQCWCEAG   71 (386)
T ss_dssp             ---------------------------------------------------------CCTTE--EC------CCEECCTT
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCc-eECCC--CCccCccceeCC----cCcccCc--CCCCC-CCCeEEECCC
Confidence            35889865  599999888888999999999 66543  689987766431    1256553  98887 6899999999


Q ss_pred             Cc----cCccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCc
Q psy951          213 FA----GTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAF  288 (428)
Q Consensus       213 y~----G~~Ce~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~  288 (428)
                      |.    |..|+.....                                                                
T Consensus        72 ~~l~~d~~~C~~~~~~----------------------------------------------------------------   87 (386)
T 3v65_B           72 YELRPDRRSCKALGPE----------------------------------------------------------------   87 (386)
T ss_dssp             EEECTTSSCEEECSSC----------------------------------------------------------------
T ss_pred             ceEcCCCCeECCcccc----------------------------------------------------------------
Confidence            98    6667542211                                                                


Q ss_pred             CCCCCCceeeeecCCcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEE-ec
Q psy951          289 NNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI-SD  367 (428)
Q Consensus       289 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~-~~  367 (428)
                             ..+++++..+|+.++++...+..+++++..|.++++|+.+++|||+|...++|+|..++|   ...+.++ .+
T Consensus        88 -------~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g---~~~~~~~~~~  157 (386)
T 3v65_B           88 -------PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG---SNVEEVVSTG  157 (386)
T ss_dssp             -------CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---CCEEEEECSS
T ss_pred             -------ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC---CCcEEEEeCC
Confidence                   246778888999999988888888899999999999999999999999999999999998   3355555 48


Q ss_pred             cccceeeeeeccCCeEEEEeCCCCcEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          368 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       368 ~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      +..|.||||||.+++|||+|.+.++|++++++|+.+++++.    ..+..|++||++-
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp  211 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHP  211 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEET
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEc
Confidence            89999999999999999999999999999999999999984    4567788999873

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.94  E-value=3e-25  Score=218.23  Aligned_cols=204  Identities=26%  Similarity=0.454  Sum_probs=170.4

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|.... +|.|++++|+..+.++..++..|.|||+|+.++ +|||+|...++|+++++||+.+++++..  .+..|.
T Consensus        87 ly~~D~~~~-~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~  162 (349)
T 3v64_C           87 VFWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPR  162 (349)
T ss_dssp             EEEEETTTT-EEEEEETTSCSCEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECT--TCSCEE
T ss_pred             EEEEeccCC-ceEEEecCCCCceEEEeCCCCCccEEEEecCCC-eEEEEcCCCCeEEEEcCCCCceEEEEeC--CCCCcc
Confidence            699998776 899999999998888888899999999999999 8999999999999999999999998876  578888


Q ss_pred             eeecc--ccEEEEEeCCC-CceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCCCCCCccccCCCccee
Q psy951           81 SLDVF--ENNIYWLARDT-GSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQC  157 (428)
Q Consensus        81 ~l~~~--~~~lYwtD~~~-~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~~C~~~C~~~~~~~~C  157 (428)
                      +|++.  +++|||+|+.. ++|++++++|+....++.                                           
T Consensus       163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-------------------------------------------  199 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------------------------------------------  199 (349)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-------------------------------------------
T ss_pred             eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-------------------------------------------
Confidence            87775  89999999987 889988887643211000                                           


Q ss_pred             cCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHHH
Q psy951          158 ACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYI  237 (428)
Q Consensus       158 ~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~~  237 (428)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (349)
T 3v64_C          200 --------------------------------------------------------------------------------  199 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCcccee
Q psy951          238 PTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFR  317 (428)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  317 (428)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (349)
T 3v64_C          200 --------------------------------------------------------------------------------  199 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe-ccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          318 DVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS-DERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       318 ~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                         .++..|.||++|+.+++|||+|...++|.+..++|.   ..++++. ++..|.|||||  .++|||+|.+...|.++
T Consensus       200 ---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          200 ---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             ---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEE
Confidence               011246699999999999999999999999999993   3555554 89999999996  78999999999999999


Q ss_pred             E-ccCcceeEEEecccCCCCCCCcccccc
Q psy951          397 F-MLEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       397 ~-~~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      + .+|+.++++.     .+...|.+|++.
T Consensus       272 ~~~~G~~~~~i~-----~~~~~p~gi~v~  295 (349)
T 3v64_C          272 NKFTGKNQEIIR-----NKLHFPMDIHTL  295 (349)
T ss_dssp             ETTTCCSCEEEE-----CSCSCCCCEEEE
T ss_pred             EccCCCccEEec-----cCCCCCceEEEE
Confidence            8 8998888775     345667777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=249.07  Aligned_cols=204  Identities=24%  Similarity=0.463  Sum_probs=163.6

Q ss_pred             CCCCCCC--CCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCC
Q psy951          136 PNPCSQS--PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDF  213 (428)
Q Consensus       136 ~n~C~~~--~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy  213 (428)
                      .++|..+  .|++.|.+.+++|.|.|++|| .+.+   +..|.+++++.    .++.|.  +.|++.. |+|+|.|++||
T Consensus       312 ~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy-~l~~---g~~C~dideC~----~~~~C~--~~C~n~~-gsy~C~C~~Gy  380 (791)
T 3m0c_C          312 TNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVA---QRRCEDIDECQ----DPDTCS--QLCVNLE-GGYKCQCEEGF  380 (791)
T ss_dssp             CCSTTTGGGGCSSEEEECSBSEEEECCTTC-EEET---TTEEECCCCCS----SSSSCT--TTCCBCS-SCBCCCCCSSE
T ss_pred             cccccccccCccccccCCCCCcccCCCCCC-ccCC---CCccccCcccC----CCCCCC--CeeecCC-CCceeecCCCC
Confidence            5677653  688899999999999999999 5532   58999877654    233453  5898887 67999999999


Q ss_pred             ccC----ccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcC
Q psy951          214 AGT----FCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFN  289 (428)
Q Consensus       214 ~G~----~Ce~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~  289 (428)
                      .+.    .|+....                                                                  
T Consensus       381 ~l~~~~~~C~~~~~------------------------------------------------------------------  394 (791)
T 3m0c_C          381 QLDPHTKACKAVGS------------------------------------------------------------------  394 (791)
T ss_dssp             ECCSSCCCCEETTS------------------------------------------------------------------
T ss_pred             EeCCCCceeeeccc------------------------------------------------------------------
Confidence            852    3322100                                                                  


Q ss_pred             CCCCCceeeeecCCcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccC-CceEEEEe-c
Q psy951          290 NGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK-GQVQAVIS-D  367 (428)
Q Consensus       290 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~-~~~~~i~~-~  367 (428)
                           -..+++++..+|+.+++....+..++.+++.++||+||+.+++|||+|...++|+|+.++|... +..++++. +
T Consensus       395 -----~p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~  469 (791)
T 3m0c_C          395 -----IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  469 (791)
T ss_dssp             -----CCEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             -----ccccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC
Confidence                 0246779999999999999999999999999999999999999999999999999999998421 23456665 8


Q ss_pred             cccceeeeeeccCCeEEEEeCCCCcEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          368 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       368 ~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      +..|.||||||++++|||+|.+..+|++++++|+.+++|+...    +..|++||||-
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~----l~~P~gIaVDp  523 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN----GSKPRAIVVDP  523 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT----TCCEEEEEEET
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC----CCCcceEEEec
Confidence            9999999999999999999999999999999999999998544    56688999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.94  E-value=1.5e-24  Score=210.57  Aligned_cols=203  Identities=22%  Similarity=0.376  Sum_probs=165.7

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCc-EEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccce
Q psy951            1 MFWAETGASPRIESAWMDGSHR-RSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHP   79 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~-~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p   79 (428)
                      |||+|.... +|.|++++|+.. +.++..++..|.|||+|+.++ .|||+|...++|++++++|+.+++++..  .+..|
T Consensus        49 lyw~D~~~~-~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~~~~P  124 (318)
T 3sov_A           49 IYWSDVSEE-AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDGSLRKVLFWQ--ELDQP  124 (318)
T ss_dssp             EEEEETTTT-EEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECS--SCSSE
T ss_pred             EEEEECCCC-cEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC-eEEEEECCCCEEEEEECCCCcEEEEEeC--CCCCc
Confidence            699998776 899999999863 456667889999999999999 8999999999999999999999998876  57888


Q ss_pred             eeeecc--ccEEEEEeCC-CCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCCCCCCccccCCCcce
Q psy951           80 ISLDVF--ENNIYWLARD-TGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQ  156 (428)
Q Consensus        80 ~~l~~~--~~~lYwtD~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~~C~~~C~~~~~~~~  156 (428)
                      .+|++.  +++|||+|+. .++|++++++|+....++.                                          
T Consensus       125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~------------------------------------------  162 (318)
T 3sov_A          125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------------------------------------------  162 (318)
T ss_dssp             EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC------------------------------------------
T ss_pred             cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE------------------------------------------
Confidence            877764  7899999985 6788888887643321110                                          


Q ss_pred             ecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHH
Q psy951          157 CACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLY  236 (428)
Q Consensus       157 C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~  236 (428)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (318)
T 3sov_A          163 --------------------------------------------------------------------------------  162 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCccce
Q psy951          237 IPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRF  316 (428)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  316 (428)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (318)
T 3sov_A          163 --------------------------------------------------------------------------------  162 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe-ccccceeeeeeccCCeEEEEeCCCCcEEE
Q psy951          317 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS-DERRIEALDIDPVDEIIYWVDSYDRNIRR  395 (428)
Q Consensus       317 ~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~~~~~lYwtd~~~~~I~~  395 (428)
                          .++..|.+|++|+.++.|||+|....+|++..++|   ...++++. .+..|.|||+|  .+.|||+|.+...|.+
T Consensus       163 ----~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG---~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~  233 (318)
T 3sov_A          163 ----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG---TNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILA  233 (318)
T ss_dssp             ----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---CSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             ----CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC---CceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEE
Confidence                01123568999999999999999999999999999   34666666 89999999999  7899999999999999


Q ss_pred             EEc-cCcceeEEEecccCCCCCCCccccc
Q psy951          396 SFM-LEAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       396 ~~~-~g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      ++. +|+..+++.     .|...|.+|++
T Consensus       234 ~~~~~G~~~~~i~-----~~~~~P~~i~v  257 (318)
T 3sov_A          234 CNKYTGEGLREIH-----SDIFSPMDIHA  257 (318)
T ss_dssp             EETTTCCSCEEEE-----CCCSSCCCEEE
T ss_pred             EECCCCCceEEEe-----CCCCCCcEEEE
Confidence            998 687776664     34455666665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.93  E-value=7.8e-26  Score=241.56  Aligned_cols=173  Identities=30%  Similarity=0.649  Sum_probs=151.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|++..++|++++|||+.+++++...+.+|+|||||+.++ +|||+|...++|++++++|+++++++.....+.+|+
T Consensus       510 ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~  588 (699)
T 1n7d_A          510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  588 (699)
T ss_dssp             CEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCC
T ss_pred             EEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCce
Confidence            7999998766999999999999988887899999999999988 999999999999999999999999987544688999


Q ss_pred             eeeccccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCC-----CCCCCccccCC---
Q psy951           81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ-----SPCSHLCLVIP---  152 (428)
Q Consensus        81 ~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~-----~~C~~~C~~~~---  152 (428)
                      +|++++++|||+||.+++|.++++..+....++..++..|++|+++++.+|+. ..|+|..     ++|+|+|++.|   
T Consensus       589 glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp~-~~n~C~~~~~~ng~Cs~lCl~~p~~~  667 (699)
T 1n7d_A          589 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPR-GVNWCERTTLSNGGCQYLCLPAPQIN  667 (699)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSCC-SCCSSCSSSCSSCSCTTCCBCCCCCT
T ss_pred             EeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCCC-CCCCccccCCCCCCCCcccCcCcccC
Confidence            99999999999999999999999976666666777788999999999999986 7899985     38999999765   


Q ss_pred             ---CcceecCCCCCCCCCCCCCCcccccC
Q psy951          153 ---GGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       153 ---~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                         .+|+|.||.|| .|.++  +++|...
T Consensus       668 ~~~~~~~C~Cp~g~-~l~~d--~~~C~~~  693 (699)
T 1n7d_A          668 PHSPKFTCACPDGM-LLARD--MRSCLTE  693 (699)
T ss_dssp             TCSCSCBCCCCSSC-EECSS--TTCEECC
T ss_pred             CCCCCcEEECcCCC-EECCC--CCccCCC
Confidence               37999999999 66654  4677653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.92  E-value=9.4e-23  Score=197.58  Aligned_cols=103  Identities=25%  Similarity=0.472  Sum_probs=86.0

Q ss_pred             CEEEeeCCCCeEEEEEcCC----CCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCc
Q psy951            1 MFWAETGASPRIESAWMDG----SHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKL   76 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG----~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~   76 (428)
                      |||+|.... +|.+.+++|    +..+.++...+..|.|||+|+.++ +|||+|...++|++++++|+.+++++..  .+
T Consensus        44 ly~~D~~~~-~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~  119 (316)
T 1ijq_A           44 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRE--NG  119 (316)
T ss_dssp             EEEEETTTT-EEEEEEC--------CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEEC--TT
T ss_pred             EEEEECCCC-cEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC-eEEEEECCCCEEEEEeCCCCceEEEEEC--CC
Confidence            699998766 899999998    666777766788999999999989 8999999999999999999999988876  47


Q ss_pred             cceeeeecc--ccEEEEEeCCC-CceeeeccCCC
Q psy951           77 QHPISLDVF--ENNIYWLARDT-GSLYKQDKFGR  107 (428)
Q Consensus        77 ~~p~~l~~~--~~~lYwtD~~~-~~I~~~~~~g~  107 (428)
                      .+|.+|++.  +++|||+|+.. ++|++++++|+
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~  153 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence            788888774  78999999875 78888887754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.91  E-value=5.4e-24  Score=227.35  Aligned_cols=205  Identities=24%  Similarity=0.483  Sum_probs=159.9

Q ss_pred             CCCCCCCC--CCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCC
Q psy951          135 APNPCSQS--PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQD  212 (428)
Q Consensus       135 ~~n~C~~~--~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~g  212 (428)
                      ..++|..+  +|++.|.+.+++|.|.|++|| .+.+   +..|++++++...  .  +|.  +.|++.. |+|+|.|++|
T Consensus       293 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~-~~~~---~~~C~dideC~~~--~--~C~--~~C~n~~-g~y~C~C~~G  361 (699)
T 1n7d_A          293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVA---QRRCEDIDECQDP--D--TCS--QLCVNLE-GGYKCQCEEG  361 (699)
T ss_dssp             CCCCTTSSTTTSCTTCCCCTTCCCCCCCSSS-CCCS---SSCCCCCCCCSSS--S--SCT--TTCCBCS-SCBCCCCCSS
T ss_pred             ccccccccccCcCCCcccCCCCcEEeCCCCe-EcCC---CCcccCccccCCC--C--ccc--cccccCC-CCeeeeeecc
Confidence            35778753  699999999999999999999 5533   5889977765322  2  453  4788887 6799999999


Q ss_pred             CccC----ccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCc
Q psy951          213 FAGT----FCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAF  288 (428)
Q Consensus       213 y~G~----~Ce~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~  288 (428)
                      |.+.    .|+....                                                                 
T Consensus       362 ~~~~~~~~~C~~~~~-----------------------------------------------------------------  376 (699)
T 1n7d_A          362 FQLDPHTKACKAVGS-----------------------------------------------------------------  376 (699)
T ss_dssp             CBCCSSCCCCBCCSS-----------------------------------------------------------------
T ss_pred             cccCCCCCccccccc-----------------------------------------------------------------
Confidence            9953    2332100                                                                 


Q ss_pred             CCCCCCceeeeecCCcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccC-CceEEEE-e
Q psy951          289 NNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK-GQVQAVI-S  366 (428)
Q Consensus       289 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~-~~~~~i~-~  366 (428)
                            ...+++++..+|+.+++....+..++..+..|++|++|+.+++|||+|...++|+|+.++|... .....++ .
T Consensus       377 ------~~~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~  450 (699)
T 1n7d_A          377 ------IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  450 (699)
T ss_dssp             ------CCCBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred             ------ceeEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence                  0236678888999999998888889999999999999999999999999999999999987211 1233344 4


Q ss_pred             ccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcceeEEEecccCCCCCCCccccccc
Q psy951          367 DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       367 ~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      ++..|.||||||.+++|||+|.+...|.+++++|+.+++++..    .+..|++||++-
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----~~~~P~giavDp  505 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----QGSKPRAIVVDP  505 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----SSCCCCCEECCS
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC----CCCCcceEEEcc
Confidence            7889999999999999999999999999999999999988744    456678888863

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.86  E-value=1.9e-19  Score=169.21  Aligned_cols=246  Identities=17%  Similarity=0.222  Sum_probs=171.0

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcE-----EEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCC
Q psy951            1 MFWAETGASPRIESAWMDGSHRR-----SLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDK   75 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~-----~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~   75 (428)
                      |||++.+   +|.+.++||+..+     .++......|.|+++|+.++ +|||+|...++|.+++++|...+.++..  .
T Consensus         4 l~~~~~~---~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~   77 (267)
T 1npe_A            4 LLFAQTG---KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VVYWTDISEPSIGRASLHGGEPTTIIRQ--D   77 (267)
T ss_dssp             EEEEEEE---EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EEEEEETTTTEEEEEESSSCCCEEEECT--T
T ss_pred             EEEEcCC---eEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC-EEEEEECCCCEEEEEecCCCCcEEEEEC--C
Confidence            5788753   7999999998642     34443356899999999888 9999999999999999999987777765  4


Q ss_pred             ccceeeeecc--ccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccc--cccCCCCCCCCCCCCCCCccccC
Q psy951           76 LQHPISLDVF--ENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHA--QRYNTSAPNPCSQSPCSHLCLVI  151 (428)
Q Consensus        76 ~~~p~~l~~~--~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~--~~~~~~~~n~C~~~~C~~~C~~~  151 (428)
                      +..|.+|++.  +++|||+|...++|.+++.+|.....++..++..|.+|++...  ..|...                 
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~-----------------  140 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD-----------------  140 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE-----------------
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEE-----------------
Confidence            6788887775  6899999999999999999876555544444455655554321  111110                 


Q ss_pred             CCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCch
Q psy951          152 PGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLG  231 (428)
Q Consensus       152 ~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~  231 (428)
                               .+.                             +        .+                            
T Consensus       141 ---------~~~-----------------------------~--------~~----------------------------  146 (267)
T 1npe_A          141 ---------WNR-----------------------------D--------NP----------------------------  146 (267)
T ss_dssp             ---------CCS-----------------------------S--------SC----------------------------
T ss_pred             ---------CCC-----------------------------C--------Cc----------------------------
Confidence                     000                             0        00                            


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeec
Q psy951          232 RSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYET  311 (428)
Q Consensus       232 ~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~  311 (428)
                                                                                               .+..++.
T Consensus       147 -------------------------------------------------------------------------~I~~~~~  153 (267)
T 1npe_A          147 -------------------------------------------------------------------------KIETSHM  153 (267)
T ss_dssp             -------------------------------------------------------------------------EEEEEET
T ss_pred             -------------------------------------------------------------------------EEEEEec
Confidence                                                                                     0000000


Q ss_pred             Cccceeecc-ccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCC
Q psy951          312 HKRRFRDVI-SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYD  390 (428)
Q Consensus       312 ~~~~~~~~i-~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~  390 (428)
                      +......+. ..+..|.+|++|+..++|||+|...++|.+..++|   .....++..+..|.||++|  .++|||+|.+.
T Consensus       154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g---~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~  228 (267)
T 1npe_A          154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---PGRRKVLEGLQYPFAVTSY--GKNLYYTDWKT  228 (267)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---EEEEEEEECCCSEEEEEEE--TTEEEEEETTT
T ss_pred             CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC---CceEEEecCCCCceEEEEe--CCEEEEEECCC
Confidence            000000011 24567999999999999999999999999999998   3455556678899999999  79999999999


Q ss_pred             CcEEEEEcc-CcceeEEEecccCCCCCCCccccccc
Q psy951          391 RNIRRSFML-EAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       391 ~~I~~~~~~-g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      .+|.+.+.+ |+..+++-.+.    ...|.+|++.-
T Consensus       229 ~~v~~~d~~~g~~~~~i~~g~----~~~p~gi~~~~  260 (267)
T 1npe_A          229 NSVIAMDLAISKEMDTFHPHK----QTRLYGITIAL  260 (267)
T ss_dssp             TEEEEEETTTTEEEEEECCSS----CCCCCCEEEEC
T ss_pred             CeEEEEeCCCCCceEEEcccc----ccccceeeecC
Confidence            999999997 44444443221    22466776643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.73  E-value=1.1e-15  Score=143.54  Aligned_cols=121  Identities=22%  Similarity=0.501  Sum_probs=97.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|.+.. +|.+.+++|...+.++...+..|+||++|+.++ +|||+|...++|.+++++|+.++++...  .+..|.
T Consensus        50 ly~~d~~~~-~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~  125 (267)
T 1npe_A           50 VYWTDISEP-SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPR  125 (267)
T ss_dssp             EEEEETTTT-EEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEE
T ss_pred             EEEEECCCC-EEEEEecCCCCcEEEEECCCCCccEEEEEecCC-eEEEEECCCCEEEEEEcCCCCEEEEEEC--CCCCcc
Confidence            699998776 899999999988877777788999999999888 8999999999999999999988888765  467788


Q ss_pred             eeecc--ccEEEEEeCC--CCceeeeccCCCCceeeeccCCCCCccccc
Q psy951           81 SLDVF--ENNIYWLARD--TGSLYKQDKFGRGVPVLISKDLVNPSGVKA  125 (428)
Q Consensus        81 ~l~~~--~~~lYwtD~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v  125 (428)
                      +|++.  +++|||+|+.  +++|++.+.+|.....+....+..|.+|++
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            77765  7899999986  678999998876544443333444555444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.67  E-value=1.9e-15  Score=145.10  Aligned_cols=98  Identities=7%  Similarity=0.224  Sum_probs=78.8

Q ss_pred             CEEEee--CCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccc
Q psy951            1 MFWAET--GASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQH   78 (428)
Q Consensus         1 lyWtd~--~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~   78 (428)
                      |||+|.  ...+.|.+.++||+.++.|.....     +++|+..+ .|||++.+..+|++++++|+.+++|..+  ....
T Consensus       118 Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~-~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~~  189 (302)
T 3s25_A          118 IYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDR-YFYYNNPKNGQLYRYDTASQSEALFYDC--NCYK  189 (302)
T ss_dssp             EEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETT-EEEEECTTTCCEEEEETTTTEEEEEECS--CEEE
T ss_pred             EEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECC-EEEEEeCCCceEEEEECCCCCEEEEeCC--Cccc
Confidence            699993  334589999999999998877544     45788888 9999999889999999999999988765  3444


Q ss_pred             eeeeeccccEEEEEeCCC-CceeeeccCCCC
Q psy951           79 PISLDVFENNIYWLARDT-GSLYKQDKFGRG  108 (428)
Q Consensus        79 p~~l~~~~~~lYwtD~~~-~~I~~~~~~g~~  108 (428)
                      |  +...+++|||+++.. ..|++++++|+.
T Consensus       190 ~--~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          190 P--VVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             E--EEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             e--eeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            4  346799999999864 578888888654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.62  E-value=6.2e-14  Score=134.52  Aligned_cols=104  Identities=19%  Similarity=0.321  Sum_probs=79.9

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCC-------------CeEEEEEcCCCCeE
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKL-------------NTIESVRHDGRNRQ   67 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~-------------~~I~~~~ldG~~~~   67 (428)
                      ||+.+.....+|.+.+.||++.+.|-..   .+.-|.+|  .+ .||+++...             ..|.++++||+.++
T Consensus        28 iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~~~~i~~~--g~-~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~  101 (302)
T 3s25_A           28 VFFSNTNDNGRLYAMNIDGSNIHKLSND---TAMYINAD--KN-YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST  101 (302)
T ss_dssp             EEEEEGGGTTEEEEEETTSCSCEEEEEE---EEEEEEEC--SS-EEEEEEECC------CCSSCCSEEEEEEETTSCCCE
T ss_pred             EEEEeCCCCceEEEEcCCCCCCEEccCC---ceeeEEEc--CC-EEEEEECCCCcccccceeccCCCeEEEEeCCCCcce
Confidence            4677655556999999999998877553   36777776  56 999997653             58999999999988


Q ss_pred             EEEeCCCCccceeeeeccccEEEEEe---CCCCceeeeccCCCCceeeecc
Q psy951           68 TILSGSDKLQHPISLDVFENNIYWLA---RDTGSLYKQDKFGRGVPVLISK  115 (428)
Q Consensus        68 ~i~~~~~~~~~p~~l~~~~~~lYwtD---~~~~~I~~~~~~g~~~~~~~~~  115 (428)
                      .|...   ...  .+++.+++|||+|   .....|++++.+|+..+.+...
T Consensus       102 ~l~~~---~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~  147 (302)
T 3s25_A          102 VLDPD---PCI--YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH  147 (302)
T ss_dssp             EEECS---CEE--EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS
T ss_pred             EeecC---Ccc--EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC
Confidence            87765   222  5677999999999   4567899999998776555443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=7.2e-11  Score=118.02  Aligned_cols=75  Identities=12%  Similarity=0.096  Sum_probs=59.8

Q ss_pred             CCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceeeeeccccEEEEEeCCCC-ceeeeccCCC
Q psy951           29 GVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTG-SLYKQDKFGR  107 (428)
Q Consensus        29 ~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~~~lYwtD~~~~-~I~~~~~~g~  107 (428)
                      .+..|.+|++|. .+ +|||+|...++|.++++++.....+.... ..++ ++++..++.|||+|.... .|++.+..++
T Consensus       129 ~~~~P~~la~d~-~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NN-TVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCCCEEEEEECS-TT-EEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             ccCCceEEEEeC-CC-CEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            377999999994 46 79999999999999999987777776652 3444 667777889999998665 8888887644

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=8.5e-11  Score=118.29  Aligned_cols=101  Identities=7%  Similarity=0.115  Sum_probs=79.0

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCC----eEEEEEcCCCCe--EEEEeCCC
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLN----TIESVRHDGRNR--QTILSGSD   74 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~----~I~~~~ldG~~~--~~i~~~~~   74 (428)
                      ||++|.+  .+|.+.++++...+.+.. ....|.+|++|...+ +||++|...+    .+.....+|...  +.+..   
T Consensus       152 Lyv~d~~--~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~-~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~---  224 (430)
T 3tc9_A          152 LYLVGEQ--HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEAD-SMIITNDQNNNDRPNNYILTRESGFKVITELTK---  224 (430)
T ss_dssp             EEEEEBT--EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSS-EEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE---
T ss_pred             EEEEeCC--CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCC-EEEEEeCCCCcccceEEEEeCCCceeeeeeecc---
Confidence            6899987  489999999877666655 678999999998877 8999998543    566677788665  34432   


Q ss_pred             Cccceeeeecc--ccEEEEEeCCCCceeeeccCCCCc
Q psy951           75 KLQHPISLDVF--ENNIYWLARDTGSLYKQDKFGRGV  109 (428)
Q Consensus        75 ~~~~p~~l~~~--~~~lYwtD~~~~~I~~~~~~g~~~  109 (428)
                       +.+|.++++.  +++||++|+.+++|++.+.++...
T Consensus       225 -~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~  260 (430)
T 3tc9_A          225 -GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET  260 (430)
T ss_dssp             -CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred             -CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence             5667776664  689999999999999999986543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=1.5e-10  Score=116.41  Aligned_cols=103  Identities=14%  Similarity=-0.004  Sum_probs=74.1

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCC--ceEEEEe---------------ccccce-eeeeec------
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG--QVQAVIS---------------DERRIE-ALDIDP------  378 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~--~~~~i~~---------------~~~~p~-glavD~------  378 (428)
                      ...|.+|++||..++|||+|...++|.+...++....  ...++..               .+..|. |+++|-      
T Consensus       269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            3568999999999999999999999999998873110  1222221               267899 999973      


Q ss_pred             -cCCeEEEEeCCCCcEEEEEccCcceeEEEec------------ccCCCCCCCccccccc
Q psy951          379 -VDEIIYWVDSYDRNIRRSFMLEAQKGQVQAG------------ASRHQNGVPASSQRNL  425 (428)
Q Consensus       379 -~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~------------~~~~~~~~p~~~~~~~  425 (428)
                       ..++||++|.+..+|.+.+.+|......-.+            .....+..|++||++-
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence             3579999999999999999888544333221            0112256899999874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.29  E-value=6.6e-10  Score=111.84  Aligned_cols=98  Identities=10%  Similarity=-0.040  Sum_probs=70.7

Q ss_pred             eeEEeeccCCCEEEEEecCCCeEEEeeeccccCC--ceEEEEe---------------ccccceeeee--------eccC
Q psy951          326 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG--QVQAVIS---------------DERRIEALDI--------DPVD  380 (428)
Q Consensus       326 ~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~--~~~~i~~---------------~~~~p~glav--------D~~~  380 (428)
                      +.+|++|+..++||++|...++|.|..+++....  ...++..               .+..|.|||+        |-..
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~  354 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE  354 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence            4479999999999999999999999998853111  1122221               3678999999        3356


Q ss_pred             CeEEEEeCCCCcEEEEEccCcceeEEEeccc-------------CCCCCCCcccccc
Q psy951          381 EIIYWVDSYDRNIRRSFMLEAQKGQVQAGAS-------------RHQNGVPASSQRN  424 (428)
Q Consensus       381 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~-------------~~~~~~p~~~~~~  424 (428)
                      ++||++|.+..+|.+.+.+|... ++.-.+.             ...+..|.+||++
T Consensus       355 g~lyvaD~~n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd  410 (433)
T 4hw6_A          355 YDFYFCDRDSHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYD  410 (433)
T ss_dssp             EEEEEEETTTTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred             CcEEEEECCCCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence            89999999999999999988433 3332111             2235679999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.27  E-value=2.2e-09  Score=107.12  Aligned_cols=103  Identities=8%  Similarity=0.007  Sum_probs=76.6

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCC-eEEEEEcCCCCeEEEE-eCC-CCcc
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLN-TIESVRHDGRNRQTIL-SGS-DKLQ   77 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~-~I~~~~ldG~~~~~i~-~~~-~~~~   77 (428)
                      |||+|.+.. +|.+.++++.....+... ...|. +++|+..+ .|||++...+ .|.+.+.++......+ ... ....
T Consensus       144 lyv~d~~~~-~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~  219 (409)
T 3hrp_A          144 VLAYQRDDP-RVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG  219 (409)
T ss_dssp             EEEEETTTT-EEEEEETTTTEEEEEEET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred             EEEEecCCC-cEEEEECCCCEEEEeecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence            699998665 899999998776666653 56788 99999988 9999998665 9999999877653333 110 0245


Q ss_pred             ceeeeecc--ccEEEEEeCCCCceeeeccCCCC
Q psy951           78 HPISLDVF--ENNIYWLARDTGSLYKQDKFGRG  108 (428)
Q Consensus        78 ~p~~l~~~--~~~lYwtD~~~~~I~~~~~~g~~  108 (428)
                      .|.++++.  +++||++|. +++|++.+..+..
T Consensus       220 ~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~  251 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDS-NKNFGRFNVKTQE  251 (409)
T ss_dssp             CCCBCEECTTSSEEEEECT-TCEEEEEETTTCC
T ss_pred             CcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCC
Confidence            56666654  689999886 6789999887543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.25  E-value=5.8e-10  Score=112.23  Aligned_cols=103  Identities=13%  Similarity=0.079  Sum_probs=71.7

Q ss_pred             CEEEeeCC---CCeEEEEEcCCCCc-EEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcC-CCCeEEEEeCCCC
Q psy951            1 MFWAETGA---SPRIESAWMDGSHR-RSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHD-GRNRQTILSGSDK   75 (428)
Q Consensus         1 lyWtd~~~---~~~I~~a~~DG~~~-~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ld-G~~~~~i~~~~~~   75 (428)
                      ||++|.+.   ...|.+...++... ...+. .+..|.|+++|+..+ +|||+|...++|.+++.+ |.-...+.... .
T Consensus       195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~  271 (433)
T 4hw6_A          195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMD-T  271 (433)
T ss_dssp             EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECS-C
T ss_pred             EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccC-C
Confidence            57888743   12355555555443 12222 478999999999778 899999999999999998 55424444321 2


Q ss_pred             ccce--eeeeccccEEEEEeCCCCceeeeccCC
Q psy951           76 LQHP--ISLDVFENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        76 ~~~p--~~l~~~~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      ...+  ++++..+++||++|..+++|++.+.++
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            3334  555556778999999999999988774

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.21  E-value=1.7e-09  Score=100.13  Aligned_cols=98  Identities=22%  Similarity=0.303  Sum_probs=68.7

Q ss_pred             CEE-EeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccce
Q psy951            1 MFW-AETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHP   79 (428)
Q Consensus         1 lyW-td~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p   79 (428)
                      ||+ ++.... +|.+.+.++.....+.......|.+|++|.. + +||+++. .+.|.+.+.+|.....+...  ....|
T Consensus        37 l~v~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g-~l~v~~~-~~~i~~~d~~~~~~~~~~~~--~~~~p  110 (270)
T 1rwi_B           37 VYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-G-TVYVTDF-NNRVVTLAAGSNNQTVLPFD--GLNYP  110 (270)
T ss_dssp             EEEEECSSSC-EEEEECC-----EECCCCSCCSCCCEEECTT-C-CEEEEET-TTEEEEECTTCSCCEECCCC--SCSSE
T ss_pred             EEEEccCCCC-cEEEecCCCcccceEeeCCcCCcceeEECCC-C-CEEEEcC-CCEEEEEeCCCceEeeeecC--CcCCC
Confidence            356 555444 7888877665544433345678999999974 5 6999998 88999999998766544333  45678


Q ss_pred             eeeecc-ccEEEEEeCCCCceeeecc
Q psy951           80 ISLDVF-ENNIYWLARDTGSLYKQDK  104 (428)
Q Consensus        80 ~~l~~~-~~~lYwtD~~~~~I~~~~~  104 (428)
                      .+|++. +++||+++...+.|.+.+.
T Consensus       111 ~~i~~~~~g~l~v~~~~~~~i~~~~~  136 (270)
T 1rwi_B          111 EGLAVDTQGAVYVADRGNNRVVKLAA  136 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             cceEECCCCCEEEEECCCCEEEEEEC
Confidence            888876 6789999988888888753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.08  E-value=4.9e-08  Score=91.24  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      ||+++.+.. +|.+.+.+|+.....+......|.+|++|.. + .||+++...+.|.+.+.+|..++.....  ....|.
T Consensus        33 l~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g-~l~v~~~~~~~v~~~d~~g~~~~~~~~~--~~~~~~  107 (300)
T 2qc5_A           33 VWFTQHKAN-KISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-G-DIWFTENGANKIGKLSKKGGFTEYPLPQ--PDSGPY  107 (300)
T ss_dssp             EEEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECTT-S-CEEEEETTTTEEEEECTTSCEEEEECSS--TTCCEE
T ss_pred             EEEEcCCCC-eEEEECCCCceEEEECCCCCCcceeEEECCC-C-CEEEEecCCCeEEEECCCCCeEEecCCC--CCCCCc
Confidence            355554443 7888888855443223334578999999954 5 6999998889999999996644333332  346788


Q ss_pred             eeecc-ccEEEEEeCCCCceeeeccC
Q psy951           81 SLDVF-ENNIYWLARDTGSLYKQDKF  105 (428)
Q Consensus        81 ~l~~~-~~~lYwtD~~~~~I~~~~~~  105 (428)
                      +|++. ++.||+++...+.|.+.+.+
T Consensus       108 ~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A          108 GITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             cceECCCCCEEEEccCCCeEEEECCC
Confidence            88876 67899999877889888876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.04  E-value=1.3e-08  Score=94.25  Aligned_cols=93  Identities=8%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEE-eccccceeeeeeccCCeEEEEeCCCCcEEEEEccCc
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI-SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEA  401 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~-~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~  401 (428)
                      +..|.+|++|+.. .||+++....+|.+...++   ....... ..+..|.+|++|..+ +||+++.+...|.+.+.+|.
T Consensus       149 ~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          149 LNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAES---NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CCSCCCEEECTTC-CEEEEEGGGTEEEEECTTT---CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCS
T ss_pred             CCCceeEEEeCCC-CEEEEECCCCEEEEEecCC---CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCC
Confidence            4568899999854 5999999888999998877   2222222 367889999999875 99999998889999999887


Q ss_pred             ceeEEEecccCCCCCCCcccccc
Q psy951          402 QKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       402 ~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      ....+.    ..+...|.+|+++
T Consensus       224 ~~~~~~----~~~~~~p~~i~~~  242 (270)
T 1rwi_B          224 TSTVLP----FTGLNTPLAVAVD  242 (270)
T ss_dssp             CCEECC----CCSCSCEEEEEEC
T ss_pred             cceeec----cCCCCCceeEEEC
Confidence            655432    2335678888775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.03  E-value=7.7e-08  Score=92.55  Aligned_cols=95  Identities=13%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             eEEEEEcC-CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCC--eEEEEeC------CCCccceee
Q psy951           11 RIESAWMD-GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRN--RQTILSG------SDKLQHPIS   81 (428)
Q Consensus        11 ~I~~a~~D-G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~--~~~i~~~------~~~~~~p~~   81 (428)
                      +|.+.+.+ |+-.+.+-...+..|.||++|+. + +||++|...++|.+.+.+|..  ...+...      ...+..|.+
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~-g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTD-G-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTT-S-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCC-C-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            58888876 65544332345679999999964 5 699999999999999999983  3444320      125668988


Q ss_pred             eecc--ccEEEEEeC-CCCceeeeccCCC
Q psy951           82 LDVF--ENNIYWLAR-DTGSLYKQDKFGR  107 (428)
Q Consensus        82 l~~~--~~~lYwtD~-~~~~I~~~~~~g~  107 (428)
                      |++.  ++.||++|. .+++|.+.+.+|.
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~~~g~  176 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFSPSGK  176 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEECTTSC
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEcCCCC
Confidence            8886  689999995 7889999987754

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.98  E-value=4.3e-10  Score=85.89  Aligned_cols=72  Identities=28%  Similarity=0.648  Sum_probs=57.2

Q ss_pred             CCCCCCC-CCCCC-ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCC
Q psy951          135 APNPCSQ-SPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQD  212 (428)
Q Consensus       135 ~~n~C~~-~~C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~g  212 (428)
                      .+++|.. ++|.+ .|++.+++|+|.|++|| .+    .|..|.+++++....    +|.| ++|++.. |+|.|.|++|
T Consensus         4 dideC~~~~~C~~g~C~n~~g~y~C~C~~Gy-~~----~g~~C~dideC~~~~----~C~~-~~C~n~~-g~y~C~C~~G   72 (82)
T 1emn_A            4 DMDECKEPDVCKHGQCINTDGSYRCECPFGY-IL----AGNECVDTDECSVGN----PCGN-GTCKNVI-GGFECTCEEG   72 (82)
T ss_dssp             CCCSSSSTTSCSSSEECCCSSCCCEECCTTE-EE----ETTEEEECCGGGTCC----TTSS-SCEEECS-SSEEECCSSS
T ss_pred             ccccCCCCCCcCCCEEEecCCCEEEECCCCe-EC----CCCccCCcccccCCC----CCCC-CEeECCC-CCEEeECCCC
Confidence            5688986 78987 99999999999999999 32    268898776653222    5777 5999987 6799999999


Q ss_pred             CccCc
Q psy951          213 FAGTF  217 (428)
Q Consensus       213 y~G~~  217 (428)
                      |.|..
T Consensus        73 ~~g~~   77 (82)
T 1emn_A           73 FEPGP   77 (82)
T ss_dssp             SCCCS
T ss_pred             eEeCC
Confidence            99753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=1.5e-07  Score=95.53  Aligned_cols=99  Identities=9%  Similarity=0.155  Sum_probs=73.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeC---CCCCceeEEE-------cCCCCCEEEEEECCCC------eEEEEEcC--
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMT---GVRHPTGLSV-------DAAMDHTLYWVDSKLN------TIESVRHD--   62 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~---~~~~P~glav-------D~~~~~~lYW~d~~~~------~I~~~~ld--   62 (428)
                      ||.+++... +|.+.++++....+++..   .+..|.+|++       |...+ +||.+|...+      .|..+..+  
T Consensus       154 Lyv~~~~~~-~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          154 LYICYDGHK-AIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEEETEE-EEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             EEEEECCCC-eEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC-EEEEEeCCCCCcccCceEEEEecCCC
Confidence            577887654 699999998888888764   3557999999       98877 8999998762      36666433  


Q ss_pred             CCCe-----EEEEeCCCCccceeeeecc--ccEEEEEeCCCCceeeeccC
Q psy951           63 GRNR-----QTILSGSDKLQHPISLDVF--ENNIYWLARDTGSLYKQDKF  105 (428)
Q Consensus        63 G~~~-----~~i~~~~~~~~~p~~l~~~--~~~lYwtD~~~~~I~~~~~~  105 (428)
                      |.-.     +++..    ..+|.++++.  +++||++|+..+.|++.+.+
T Consensus       232 G~~~~~~~~~~v~~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          232 GTFDDRSDIQLIAA----YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             SCCSTTSCEEEEEE----ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             Cceeecccceeecc----CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            3432     34432    4577777665  58999999999999999986

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=98.97  E-value=5.6e-10  Score=93.82  Aligned_cols=77  Identities=25%  Similarity=0.691  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCC
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQD  212 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~g  212 (428)
                      .+++|..++|.+  .|++.+++|+|.|++||       .|..|+...+.+...    +|.++|+|++.. +.|+|.|++|
T Consensus        44 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~-------~G~~C~~~~~~C~~~----~C~~~g~C~~~~-g~~~C~C~~G  111 (135)
T 2vj3_A           44 DVNECVSNPCQNDATCLDQIGEFQCICMPGY-------EGVHCEVNTDECASS----PCLHNGRCLDKI-NEFQCECPTG  111 (135)
T ss_dssp             ECCTTTTCCCCSSCEEEECSSCEEEECCTTE-------ESSSSCEECCTTTTC----CSTTTCEEEECS-SCEEEECCTT
T ss_pred             cCccCCCCCCCCCCEEeCCCCCceeeCCCCC-------cCCcceecCCcccCC----CcCCCCEeECCC-CCeEEECCCC
Confidence            467888888876  89999999999999999       578887443333322    788999999887 6799999999


Q ss_pred             CccCccCCCCC
Q psy951          213 FAGTFCENYTG  223 (428)
Q Consensus       213 y~G~~Ce~~~~  223 (428)
                      |+|..|+....
T Consensus       112 ~~G~~C~~~i~  122 (135)
T 2vj3_A          112 FTGHLCQVDLH  122 (135)
T ss_dssp             EESSSSCEECC
T ss_pred             CcCCccCccCc
Confidence            99999986543

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=98.95  E-value=9.1e-10  Score=92.51  Aligned_cols=76  Identities=30%  Similarity=0.767  Sum_probs=61.9

Q ss_pred             CCCCCC--CCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCC
Q psy951          135 APNPCS--QSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCR  210 (428)
Q Consensus       135 ~~n~C~--~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~  210 (428)
                      .+++|.  .++|.+  .|++..++|+|.|++||       .|..|+.....+..    .+|.++++|++.. |.|.|.|+
T Consensus         4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy-------~G~~C~~~~~~C~~----~~C~~~~~C~~~~-g~~~C~C~   71 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGY-------TGPRCEIDVNECVS----NPCQNDATCLDQI-GEFQCICM   71 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTE-------ESTTSCEECCTTTT----CCCCSSCEEEECS-SCEEEECC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCEEEECCCCC-------cCCcccccCccCCC----CCCCCCCEEeCCC-CCceeeCC
Confidence            568898  578987  89999999999999999       67888643333332    2788999999987 67999999


Q ss_pred             CCCccCccCCCC
Q psy951          211 QDFAGTFCENYT  222 (428)
Q Consensus       211 ~gy~G~~Ce~~~  222 (428)
                      +||+|..|+...
T Consensus        72 ~G~~G~~C~~~~   83 (135)
T 2vj3_A           72 PGYEGVHCEVNT   83 (135)
T ss_dssp             TTEESSSSCEEC
T ss_pred             CCCcCCcceecC
Confidence            999999998543

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.94  E-value=3.9e-10  Score=86.97  Aligned_cols=75  Identities=27%  Similarity=0.622  Sum_probs=57.5

Q ss_pred             CCCCCCCCC--CCC-ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCC
Q psy951          135 APNPCSQSP--CSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~--C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~  211 (428)
                      .+|+|..++  |.+ .|++.+++|+|.|++|| .+... .+..|++++++.   ..++.|. +++|++.. |+|+|.|++
T Consensus         2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy-~~~~~-~g~~C~dideC~---~~~~~C~-~~~C~n~~-g~y~C~C~~   74 (86)
T 1lmj_A            2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGY-ESGFM-MMKNCMDIDECQ---RDPLLCR-GGVCHNTE-GSYRCECPP   74 (86)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSE-EECTT-TSSSEEECCHHH---HCSSTTT-TSEEEEET-TEEEEESCT
T ss_pred             ccccccCCCCCCCCCEEECCCCCEEeeCCCCc-CccCC-CCCccCCccccc---CCCCcCC-CCEeEcCC-CCEEEECcC
Confidence            468898765  987 99999999999999999 44322 368898766532   1234575 47999987 789999999


Q ss_pred             CCccC
Q psy951          212 DFAGT  216 (428)
Q Consensus       212 gy~G~  216 (428)
                      ||.+.
T Consensus        75 G~~~~   79 (86)
T 1lmj_A           75 GHQLS   79 (86)
T ss_dssp             TSCCC
T ss_pred             CcccC
Confidence            99974

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=1.5e-07  Score=95.53  Aligned_cols=101  Identities=10%  Similarity=-0.014  Sum_probs=74.3

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCc---eEEEEe---------------ccccce-eeeeec-----
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ---VQAVIS---------------DERRIE-ALDIDP-----  378 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~---~~~i~~---------------~~~~p~-glavD~-----  378 (428)
                      ...|.+|++||..++||.+|...++|+|...++.. ..   ..+++-               .|..|. |+++|-     
T Consensus       309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~-~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~  387 (496)
T 3kya_A          309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK-KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG  387 (496)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc-ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence            34678999999999999999999999999998831 11   122321               356899 899973     


Q ss_pred             -cCCeEEEEeCCCCcEEEEEccCcceeEEEeccc-------------------CCCCCCCccccccc
Q psy951          379 -VDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGAS-------------------RHQNGVPASSQRNL  425 (428)
Q Consensus       379 -~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~-------------------~~~~~~p~~~~~~~  425 (428)
                       ..++||.+|.+..+|.+.+.+|.- .++.-.+.                   ...+..|.+||++-
T Consensus       388 ~~~g~lyVaD~~N~rIr~i~~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          388 EEEYDFYFVDRLNFCVRKVTPEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             cCCCeEEEEECCCCEEEEEeCCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence             568999999999999999998843 33432211                   12357788998874

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.92  E-value=1e-09  Score=93.01  Aligned_cols=78  Identities=29%  Similarity=0.786  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCC--ccc-------cCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCce
Q psy951          135 APNPCSQSPCSH--LCL-------VIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDL  205 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~-------~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~  205 (428)
                      ..++|..++|.+  .|+       +.+++|+|.|++||       .|..|+...+.|...    +|.++++|++.. +.|
T Consensus        51 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~-------~G~~C~~~i~~C~~~----~C~~~~~C~~~~-g~~  118 (143)
T 4d90_A           51 SAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF-------NGIHCQHNINECEVE----PCKNGGICTDLV-ANY  118 (143)
T ss_dssp             CCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTE-------ESTTSCEECCTTTTC----CSCTTCEEEEET-TEE
T ss_pred             cCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCC-------cCCCcccCCCcCCCC----CCCCCCEeECCC-CCe
Confidence            468898888987  898       56679999999999       678997333333322    688999999886 689


Q ss_pred             EecCCCCCccCccCCCCCC
Q psy951          206 TCNCRQDFAGTFCENYTGI  224 (428)
Q Consensus       206 ~C~C~~gy~G~~Ce~~~~~  224 (428)
                      +|.|++||+|+.|+.....
T Consensus       119 ~C~C~~G~~G~~c~~~~~~  137 (143)
T 4d90_A          119 SCECPGEFMGRNCQYKGGG  137 (143)
T ss_dssp             EEECCTTCBSTTSCBC---
T ss_pred             EeECCCCCccCCceecCCE
Confidence            9999999999999886543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.86  E-value=2.9e-07  Score=88.50  Aligned_cols=79  Identities=10%  Similarity=0.018  Sum_probs=64.4

Q ss_pred             ceeEEeeccCCCEEEEEec-CCCeEEEeeeccccCCceEEEEe----------ccccceeeeeeccCCeEEEEeCCCCcE
Q psy951          325 RIEALDIDPVDEIIYWVDS-YDRNIRRSFMLEAQKGQVQAVIS----------DERRIEALDIDPVDEIIYWVDSYDRNI  393 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~-~~~~I~ra~l~g~~~~~~~~i~~----------~~~~p~glavD~~~~~lYwtd~~~~~I  393 (428)
                      .|.+|++|+.++.||++|. ...+|.+...+|   .....+-.          .+..|.|||+|..+++||++|.+..+|
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I  220 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI  220 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECTTS---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE
Confidence            5779999999999999997 688999988777   22222211          356699999999889999999999999


Q ss_pred             EEEEcc-CcceeEE
Q psy951          394 RRSFML-EAQKGQV  406 (428)
Q Consensus       394 ~~~~~~-g~~~~~l  406 (428)
                      .+.+.+ |+..+++
T Consensus       221 ~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          221 QCFKTDTKEFVREI  234 (329)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEECCCCcEEEEE
Confidence            999998 7766655

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.84  E-value=8.1e-07  Score=84.54  Aligned_cols=92  Identities=9%  Similarity=0.065  Sum_probs=66.1

Q ss_pred             eeEEeeccCCCEEEEEecCCCeEEEeeeccc-cCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCccee
Q psy951          326 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEA-QKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG  404 (428)
Q Consensus       326 ~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~-~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~  404 (428)
                      |.+|  ++..++||++|...++|.+..+++. .....+++ ..+..|.||++|..+ +||.++.+...|.+.+.+|+...
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-eccCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEE
Confidence            4466  5667899999999999999999851 11223333 345789999999864 89999999999999998876432


Q ss_pred             EEEecccCCCCCCCcccccc
Q psy951          405 QVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       405 ~l~~~~~~~~~~~p~~~~~~  424 (428)
                       +  ..+..|...|.++++.
T Consensus       247 -~--~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          247 -I--AQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             -E--ECGGGTCTTEEEEEEC
T ss_pred             -E--eecccccCCceEEEEe
Confidence             2  1234466778887763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.84  E-value=5.5e-07  Score=84.07  Aligned_cols=95  Identities=6%  Similarity=-0.056  Sum_probs=70.4

Q ss_pred             cccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe--ccccceeeeeeccCCeEEEEeCCCC-cEEEEEc
Q psy951          322 DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS--DERRIEALDIDPVDEIIYWVDSYDR-NIRRSFM  398 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~--~~~~p~glavD~~~~~lYwtd~~~~-~I~~~~~  398 (428)
                      .+..|.+|++|+. +.||.++....+|.+...+|   .....+..  .+..|.+|++|.. ++||.++.+.. .|.+-+.
T Consensus       162 ~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          162 HLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             TCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECT
T ss_pred             ccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECC
Confidence            3457899999995 67999999999999988776   22222322  3678999999985 58999999886 8999999


Q ss_pred             cCcceeEEEecccCCCCCCCcccccc
Q psy951          399 LEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       399 ~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +|+..+++..   ..+...|.+++++
T Consensus       237 ~g~~~~~~~~---~~~~~~~~~i~~~  259 (286)
T 1q7f_A          237 DGQLISALES---KVKHAQCFDVALM  259 (286)
T ss_dssp             TSCEEEEEEE---SSCCSCEEEEEEE
T ss_pred             CCCEEEEEcc---cCCCCcceeEEEC
Confidence            9877666542   2234457777765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.83  E-value=4.3e-07  Score=87.38  Aligned_cols=101  Identities=8%  Similarity=-0.009  Sum_probs=70.4

Q ss_pred             EEEeeCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEe-CC--CCcc
Q psy951            2 FWAETGASPRIESAWMD-GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS-GS--DKLQ   77 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~D-G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~-~~--~~~~   77 (428)
                      |.+..+.. +|...+.+ |+....+ . ....|.+|++++. + +||.++...+.|.++++........+. +.  ....
T Consensus        57 yv~~~~~~-~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~~-g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~  131 (328)
T 3dsm_A           57 WIVVNNSH-VIFAIDINTFKEVGRI-T-GFTSPRYIHFLSD-E-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESG  131 (328)
T ss_dssp             EEEEGGGT-EEEEEETTTCCEEEEE-E-CCSSEEEEEEEET-T-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             EEEEcCCC-EEEEEECcccEEEEEc-C-CCCCCcEEEEeCC-C-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence            55555433 67777776 4444444 3 4679999999754 6 899999888999999987654432233 21  1123


Q ss_pred             ceeeeeccccEEEEEeC-CCCceeeeccCCC
Q psy951           78 HPISLDVFENNIYWLAR-DTGSLYKQDKFGR  107 (428)
Q Consensus        78 ~p~~l~~~~~~lYwtD~-~~~~I~~~~~~g~  107 (428)
                      .|.+|++.+++||.+++ ..++|...+....
T Consensus       132 ~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A          132 STEQMVQYGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             BCCCEEEETTEEEEEECTTCCEEEEEETTTT
T ss_pred             CcceEEEECCEEEEEcCCCCCEEEEEECCCC
Confidence            78888888999999998 4778888887643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.82  E-value=1.9e-06  Score=80.26  Aligned_cols=100  Identities=13%  Similarity=0.193  Sum_probs=69.2

Q ss_pred             EEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceee
Q psy951            2 FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPIS   81 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~   81 (428)
                      |+++.+. ..|.+.+.+|.............|.+|++|.. + +||+++...+.|.+.+.+|..+......  ....|.+
T Consensus        29 ~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~-g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~~~  103 (299)
T 2z2n_A           29 WITQHKA-NMISCINLDGKITEYPLPTPDAKVMCLTISSD-G-EVWFTENAANKIGRITKKGIIKEYTLPN--PDSAPYG  103 (299)
T ss_dssp             EEEETTT-TEEEEECTTCCEEEEECSSTTCCEEEEEECTT-S-CEEEEETTTTEEEEECTTSCEEEEECSS--TTCCEEE
T ss_pred             EEEecCC-CcEEEEcCCCCeEEecCCcccCceeeEEECCC-C-CEEEeCCCCCeEEEECCCCcEEEEeCCC--cCCCcee
Confidence            4444333 36888888854333222234578999999964 5 6999998889999999987643332222  3557888


Q ss_pred             eecc-ccEEEEEeCCCCceeeeccCC
Q psy951           82 LDVF-ENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        82 l~~~-~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      |.+. +++||+++...+.|.+.+.+|
T Consensus       104 i~~~~~g~l~v~~~~~~~i~~~d~~g  129 (299)
T 2z2n_A          104 ITEGPNGDIWFTEMNGNRIGRITDDG  129 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC
T ss_pred             eEECCCCCEEEEecCCceEEEECCCC
Confidence            8876 578999988778888888743

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.81  E-value=7.2e-07  Score=85.36  Aligned_cols=86  Identities=6%  Similarity=0.041  Sum_probs=64.7

Q ss_pred             cccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCC----------
Q psy951          320 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSY----------  389 (428)
Q Consensus       320 i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~----------  389 (428)
                      ...+..|.+|++++..+.||++|...++|.+..+++......+++..... |.||++|..+ +||.++..          
T Consensus       181 ~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~  258 (322)
T 2fp8_A          181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRV  258 (322)
T ss_dssp             EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCE
T ss_pred             ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC-CEEEEecCcccccccCCC
Confidence            34567889999999999999999999999999998732233444443223 9999999864 69888866          


Q ss_pred             CCcEEEEEccCcceeEEE
Q psy951          390 DRNIRRSFMLEAQKGQVQ  407 (428)
Q Consensus       390 ~~~I~~~~~~g~~~~~l~  407 (428)
                      ...|.+.+.+|+..+++-
T Consensus       259 ~~~v~~~d~~G~~~~~~~  276 (322)
T 2fp8_A          259 DPKGIKFDEFGNILEVIP  276 (322)
T ss_dssp             EEEEEEECTTSCEEEEEE
T ss_pred             ccEEEEECCCCCEEEEEE
Confidence            456888888887655543

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.79  E-value=5.3e-09  Score=81.44  Aligned_cols=62  Identities=32%  Similarity=0.624  Sum_probs=47.6

Q ss_pred             cccCCCcceecCCCCCCCCCCCCCCcccc-cCccCCCCCCCCCCCCCCCEEeeCC-CCceEecCCCCCccCccCCCC
Q psy951          148 CLVIPGGYQCACPENATPKLPGVAEIRCS-AAVERPRPLPRVCQCQNGGMCAESE-TGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       148 C~~~~~~~~C~C~~g~~~~~~~~~g~~C~-~~~~~~~~~~~~c~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      |++..++|+|.|++||       .  .|+ ...+.|...    +|.|||+|++.. .+.|+|.|++||+|.+||...
T Consensus        25 C~n~~~~y~C~C~~G~-------~--~C~~~~~~~C~~~----pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~i   88 (91)
T 1tpg_A           25 VLRSNRVEYCWCNSGR-------A--QCHSVPVKSCSEP----RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   88 (91)
T ss_dssp             CSSSSCEEEEECSSSC-------C--BCCEECEEECSSC----CSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             cccCCCCcEeECCCCC-------c--ccccCcCCcccCC----CCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCC
Confidence            4566789999999999       2  676 223333332    699999999875 356999999999999999754

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.79  E-value=4.1e-09  Score=89.26  Aligned_cols=79  Identities=33%  Similarity=0.843  Sum_probs=55.2

Q ss_pred             CCCCCCCCCC--ccccCC--CcceecCCCCCCCCCCCCCCcccccCccCCCC-----CCCCC---CCCCCCEEeeCC---
Q psy951          137 NPCSQSPCSH--LCLVIP--GGYQCACPENATPKLPGVAEIRCSAAVERPRP-----LPRVC---QCQNGGMCAESE---  201 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~-----~~~~c---~C~ngg~C~~~~---  201 (428)
                      ++|..++|.+  +|++..  ++|+|.|++||       .|..|+...+....     ...+|   +|.|+++|+...   
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~-------~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~   73 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGF-------TDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYR   73 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTC-------CTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEE
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCC-------CCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccc
Confidence            5788889987  999876  67999999999       56888764332110     11233   699999998432   


Q ss_pred             ---CCceEecCCCCCccCccCCCC
Q psy951          202 ---TGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       202 ---~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                         .+.|.|.|++||.|..|+...
T Consensus        74 ~~~~~~~~C~C~~G~~G~~C~~~i   97 (143)
T 4d90_A           74 GDTFIGYVCKCPRGFNGIHCQHNI   97 (143)
T ss_dssp             TTEECCEEEECCTTEESTTSCEEC
T ss_pred             cCCCCCeEeECcCCCcCCCcccCC
Confidence               257999999999999998443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.77  E-value=2.7e-06  Score=79.34  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEe-----CCCCCceeEEEcCCCCCEEEEEECC-CCeEEEEEcCCCCeEEEEeCCC
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVM-----TGVRHPTGLSVDAAMDHTLYWVDSK-LNTIESVRHDGRNRQTILSGSD   74 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~-----~~~~~P~glavD~~~~~~lYW~d~~-~~~I~~~~ldG~~~~~i~~~~~   74 (428)
                      ||++|.... +|.+.+.+|.....+..     ..+..|.+|+++...+ +||.++.. .+.|.+.+.+|...+.+...  
T Consensus        43 l~v~~~~~~-~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g~~~~~~~~~--  118 (286)
T 1q7f_A           43 IIVADTNNH-RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYGQFVRKFGAT--  118 (286)
T ss_dssp             EEEEEGGGT-EEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTSCEEEEECTT--
T ss_pred             EEEEECCCC-EEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCCcEEEEecCc--
Confidence            467776554 79988888876554432     1246899999965667 89999975 78999999888765555333  


Q ss_pred             Cccceeeeecc-ccEEEEEeCCCCceeeeccCCC
Q psy951           75 KLQHPISLDVF-ENNIYWLARDTGSLYKQDKFGR  107 (428)
Q Consensus        75 ~~~~p~~l~~~-~~~lYwtD~~~~~I~~~~~~g~  107 (428)
                      ....|.+|++. +++||.++...+.|.+.+.+|.
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC
Confidence            45678888865 5689999988888988887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.76  E-value=2e-06  Score=81.29  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=70.8

Q ss_pred             cccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccC--CceEEEEe---ccccceeeeeeccCCeEEEEeCCCCcEE
Q psy951          320 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK--GQVQAVIS---DERRIEALDIDPVDEIIYWVDSYDRNIR  394 (428)
Q Consensus       320 i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~--~~~~~i~~---~~~~p~glavD~~~~~lYwtd~~~~~I~  394 (428)
                      ...+..|.+++++|..+.|||+|...++|.+..++....  ...+++..   ....|.||++|..+ +||.++.+...|.
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~  223 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVI  223 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEE
Confidence            345667889999999999999999999999998863211  11233332   34689999999874 8999998888899


Q ss_pred             EEEcc-CcceeEEEecccCCCCCCCccccc
Q psy951          395 RSFML-EAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       395 ~~~~~-g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      +.+.+ |+...++-     .|...|.+++.
T Consensus       224 ~~d~~tG~~~~~i~-----~p~~~~t~~~f  248 (297)
T 3g4e_A          224 RLDPVTGKRLQTVK-----LPVDKTTSCCF  248 (297)
T ss_dssp             EECTTTCCEEEEEE-----CSSSBEEEEEE
T ss_pred             EEcCCCceEEEEEE-----CCCCCceEEEE
Confidence            99987 76555442     34445565554

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.75  E-value=1.7e-09  Score=96.12  Aligned_cols=76  Identities=24%  Similarity=0.604  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCc-cCCCCCCCCCCCCCCCEEeeCCCCceEecCCC
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~-~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~  211 (428)
                      ..++|..++|++  .|++..++|.|.|++||       .|..|+... +.|..  .+++|.+  +|++.. |+|.|.|++
T Consensus        41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf-------~G~~Ce~~i~deC~~--~~~~C~~--~C~n~~-gsy~C~C~~  108 (195)
T 1nfu_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF-------EGKNCELFTRKLCSL--DNGDCDQ--FCHEEQ-NSVVCSCAR  108 (195)
T ss_dssp             -----------------------------------------------CCGGGT--GGGGCSS--EEEEET-TEEEEECCT
T ss_pred             CCcccCCCCCCCCCEeECCCCCeeEeCCCCc-------eeccccccccccccC--CCCCCCC--EeECCC-CCeEEECCC
Confidence            678999999998  99999999999999999       578998743 32332  2345665  999887 689999999


Q ss_pred             CCc----cCccCCCC
Q psy951          212 DFA----GTFCENYT  222 (428)
Q Consensus       212 gy~----G~~Ce~~~  222 (428)
                      ||.    |..|+...
T Consensus       109 Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B          109 GYTLADNGKACIPTG  123 (195)
T ss_dssp             TEEECTTSSCEEESS
T ss_pred             CceeCCCCCccccCC
Confidence            999    99998754

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.74  E-value=3.6e-09  Score=90.02  Aligned_cols=75  Identities=19%  Similarity=0.577  Sum_probs=58.3

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEE-eeCCCCceEecCCC
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMC-AESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C-~~~~~g~~~C~C~~  211 (428)
                      .+|+|..++|.+  .|++.+++|.|.|++||       .|..|++.+++ ..  .+++|.+  +| ++.. |+|.|.|++
T Consensus        47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~-------~G~~C~~~deC-~~--~~~~C~~--~C~~n~~-g~y~C~C~~  113 (146)
T 1x7a_L           47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGF-------EGKNCELDATC-NI--KNGRCKQ--FCKTGAD-SKVLCSCTT  113 (146)
T ss_dssp             ---CCSSCSSCTTCEEEECSSCEEEECCSSE-------ESTTTCEECCT-TS--GGGSCSS--BCCCCSS-SCCCCBCCT
T ss_pred             CcCcCCCCCCCCCCEeECCCCCEEEecCCCC-------cCCcCCCCccc-cC--CCCCCcC--CCCCCCC-CCEEeEcCC
Confidence            678999999998  99999999999999999       67899877432 22  2345655  89 7666 689999999


Q ss_pred             CCc----cCccCCCC
Q psy951          212 DFA----GTFCENYT  222 (428)
Q Consensus       212 gy~----G~~Ce~~~  222 (428)
                      ||.    |..|+...
T Consensus       114 Gy~l~~dG~~C~~~~  128 (146)
T 1x7a_L          114 GYRLAPDQKSCKPAV  128 (146)
T ss_dssp             TEEECTTSSSEEECS
T ss_pred             CcEeCCCCCcCCCCC
Confidence            999    88998654

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.74  E-value=3e-09  Score=90.13  Aligned_cols=79  Identities=24%  Similarity=0.639  Sum_probs=63.4

Q ss_pred             CCCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCC---EEeeCCCCceEec
Q psy951          134 SAPNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG---MCAESETGDLTCN  208 (428)
Q Consensus       134 ~~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg---~C~~~~~g~~~C~  208 (428)
                      ..+++|..++|.+  +|++..++|+|.|++||       .|..|+.....+    ..|+|.|++   +|++..+++|+|.
T Consensus        45 ~did~C~~~pC~n~g~C~~~~g~y~C~C~~G~-------~G~~C~~~~~~c----~~c~~~~~~C~~~C~~~~g~~y~C~  113 (142)
T 2c4f_L           45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAF-------EGRNCETHKDDQ----LICVNENGGCEQYCSDHTGTKRSCR  113 (142)
T ss_dssp             TTCCGGGGCCCCTTCEEEEETTEEEEECCTTE-------ESTTSCEEGGGC----CSTTTGGGGCSSEEECCTTSCCEEE
T ss_pred             CccCcCcCCCcCCCCEEeCCCCCEEeeCCCCc-------cCCccccCcccc----ccccCCCCCccCEeECCCCCCEEEE
Confidence            3678999999998  99999999999999999       678998632211    235677777   9998874379999


Q ss_pred             CCCCCc----cCccCCCCC
Q psy951          209 CRQDFA----GTFCENYTG  223 (428)
Q Consensus       209 C~~gy~----G~~Ce~~~~  223 (428)
                      |++||.    |..|+....
T Consensus       114 C~~Gy~l~~dG~~C~~~~e  132 (142)
T 2c4f_L          114 CHEGYSLLADGVSCTPTVE  132 (142)
T ss_dssp             CCTTEEECTTSSCEEESSS
T ss_pred             CCCCceECCCCCCCCCCCc
Confidence            999999    889986544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.69  E-value=5.1e-06  Score=77.27  Aligned_cols=101  Identities=16%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      ||+++.+.. +|.+.+.+|+............|.+|++|. .+ +||+++...+.|.+.+.+|.........  ....|.
T Consensus        75 l~v~~~~~~-~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~~  149 (300)
T 2qc5_A           75 IWFTENGAN-KIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NG-DIWFTQLNGDRIGKLTADGTIYEYDLPN--KGSYPA  149 (300)
T ss_dssp             EEEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECS-TT-CEEEEETTTTEEEEECTTSCEEEEECSS--TTCCEE
T ss_pred             EEEEecCCC-eEEEECCCCCeEEecCCCCCCCCccceECC-CC-CEEEEccCCCeEEEECCCCCEEEccCCC--CCCCce
Confidence            356665444 799988886653332222457899999996 45 6999999889999999996544333332  456788


Q ss_pred             eeecc-ccEEEEEeCCCCceeeeccCC
Q psy951           81 SLDVF-ENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        81 ~l~~~-~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      +|.+. .++||+++...+.|.+.+.+|
T Consensus       150 ~i~~d~~g~l~v~~~~~~~i~~~~~~g  176 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNSIGRITNTG  176 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECTTC
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCCC
Confidence            88874 567999998888899888753

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.67  E-value=1.6e-08  Score=82.23  Aligned_cols=76  Identities=21%  Similarity=0.441  Sum_probs=52.5

Q ss_pred             CCCCCCCC--------CCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCce
Q psy951          136 PNPCSQSP--------CSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDL  205 (428)
Q Consensus       136 ~n~C~~~~--------C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~  205 (428)
                      .++|..++        |.+  +|++..++|+|.|++||       .|..|++..+..++......|.+  +|++.. |.|
T Consensus         6 ~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~-------~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~y   75 (114)
T 1aut_L            6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW-------EGRFCQREVSFLNCSLDNGGCTH--YCLEEV-GWR   75 (114)
T ss_dssp             --CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTE-------ESTTSCEECCSSSSSSGGGGCSS--EEEECS-SSE
T ss_pred             cccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCC-------cCCCcCcCCcCCcCcCCCCCCCC--EeECCC-CCE
Confidence            46777666        766  89999999999999999       67889875431111111112322  999987 679


Q ss_pred             EecCCCCCc----cCccCCC
Q psy951          206 TCNCRQDFA----GTFCENY  221 (428)
Q Consensus       206 ~C~C~~gy~----G~~Ce~~  221 (428)
                      +|.|++||.    |..|+..
T Consensus        76 ~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           76 RCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             EEECCTTEEECTTSSCEEEC
T ss_pred             EeECCCCeeECCCCCccCcC
Confidence            999999999    5667653

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.66  E-value=5.5e-09  Score=87.57  Aligned_cols=76  Identities=24%  Similarity=0.604  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCc-cCCCCCCCCCCCCCCCEEeeCCCCceEecCCC
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~-~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~  211 (428)
                      ..++|..++|++  +|++..++|.|.|++||       .|..|+... +.|..  .+++|.+  +|++.. |.|.|.|++
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~-------~G~~C~~~i~d~C~~--~~~~C~~--~C~~~~-g~y~C~C~~  108 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF-------EGKNCELFTRKLCSL--DNGDCDQ--FCHEEQ-NSVVCSCAR  108 (134)
T ss_dssp             -----------------------------------------------CCGGGT--GGGGCSS--EEEEET-TEEEEECCT
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCc-------cCCccccCCCCcccc--CCCCCCC--EeECCC-CCEEEECCC
Confidence            568999999998  99999999999999999       578898743 32322  2335655  999887 689999999


Q ss_pred             CCc----cCccCCCC
Q psy951          212 DFA----GTFCENYT  222 (428)
Q Consensus       212 gy~----G~~Ce~~~  222 (428)
                      ||.    |..|+...
T Consensus       109 Gy~l~~~g~~C~~~~  123 (134)
T 2vh0_B          109 GYTLADNGKACIPTG  123 (134)
T ss_dssp             TEEECTTSSCEEESS
T ss_pred             CcEECCCCCccCcCC
Confidence            999    89997654

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.65  E-value=4.4e-09  Score=84.48  Aligned_cols=71  Identities=30%  Similarity=0.743  Sum_probs=31.7

Q ss_pred             CCCCCCC--CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCC
Q psy951          135 APNPCSQ--SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQD  212 (428)
Q Consensus       135 ~~n~C~~--~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~g  212 (428)
                      .+|+|..  .+|++.|++.+++|.|.|++|| .+.+   +..|++++++..  +.  +|.  ++|++.. |+|.|.|++|
T Consensus        28 d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy-~g~~---g~~C~dideC~~--~~--~C~--~~C~n~~-gsy~C~C~~G   96 (107)
T 2w2n_E           28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGF-QLVA---QRRCEDIDECQD--PD--TCS--QLCVNLE-GGYKCQCEEG   96 (107)
T ss_dssp             SCCGGGTGGGGCSSEEECCSBSCEEECCTTC-EEET---TTEEEC-----------------------------------
T ss_pred             cCccCcCCCCCCCCEeEeCCCCeEEECCCCc-cccC---CCccccccccCC--CC--CcC--CeeecCC-CCEEEECCCC
Confidence            5688985  4799999999999999999999 3322   378997665432  12  454  6899887 6799999999


Q ss_pred             CccC
Q psy951          213 FAGT  216 (428)
Q Consensus       213 y~G~  216 (428)
                      |.|.
T Consensus        97 y~~~  100 (107)
T 2w2n_E           97 FQLD  100 (107)
T ss_dssp             ----
T ss_pred             ceEC
Confidence            9964

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.64  E-value=5.6e-08  Score=98.31  Aligned_cols=157  Identities=20%  Similarity=0.378  Sum_probs=68.6

Q ss_pred             CCceeEEEcCC------CCCEEEEEECCCCeEEEEEcCCCC---eEEEE-eC------CCCccceeeeecc-ccEEEEEe
Q psy951           31 RHPTGLSVDAA------MDHTLYWVDSKLNTIESVRHDGRN---RQTIL-SG------SDKLQHPISLDVF-ENNIYWLA   93 (428)
Q Consensus        31 ~~P~glavD~~------~~~~lYW~d~~~~~I~~~~ldG~~---~~~i~-~~------~~~~~~p~~l~~~-~~~lYwtD   93 (428)
                      ..|.|+++-..      .+ .+|.+|.. ++|.++.+++..   ....+ .+      .....+|.++... .+.||.+|
T Consensus       276 ~Ap~G~~~Y~G~~fP~~~g-~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~  353 (463)
T 2wg3_C          276 GPLVGGFVYRGCQSERLYG-SYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILS  353 (463)
T ss_dssp             -CEEEEEECCCSSCTTTTT-CEEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEE
T ss_pred             ccccceEEEeCCCChhhcc-eEEEecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEe
Confidence            47899999422      23 58899986 789999987543   22232 11      1124578888865 57899999


Q ss_pred             C-------CCCceeeeccCCCCceeeeccCCCCCcc-cccccccccCCCCCCCCCCCCCCC-ccccCCCcceecCCCCCC
Q psy951           94 R-------DTGSLYKQDKFGRGVPVLISKDLVNPSG-VKAYHAQRYNTSAPNPCSQSPCSH-LCLVIPGGYQCACPENAT  164 (428)
Q Consensus        94 ~-------~~~~I~~~~~~g~~~~~~~~~~~~~p~~-I~v~~~~~~~~~~~n~C~~~~C~~-~C~~~~~~~~C~C~~g~~  164 (428)
                      +       ..++|+|+......         ..|.. ..-+. ...+  ..+.|.. +|+| .|...   ++|.|++|| 
T Consensus       354 ~~~~~~~~~~G~I~Ri~~p~~~---------~~p~~C~~~~~-g~~c--~~~~C~~-~C~nG~C~~~---~~C~C~~G~-  416 (463)
T 2wg3_C          354 SSKSMTQTHNGKLYKIVDPKRP---------LMPEECRATVQ-PAQT--LTSECSR-LCRNGYCTPT---GKCCCSPGW-  416 (463)
T ss_dssp             ESSCGGGCSSEEEEEEECTTSC---------SSCGGGCCCCC-CCCC--CCCHHHH-HCCSEEECTT---SCEEECTTE-
T ss_pred             ccCCcccCCCCcEEEecCcccc---------cccccCCCCCc-CCCC--ccccccC-CCCCCccCCC---CeECCCCCc-
Confidence            7       45677776532111         00000 00000 0011  1234443 4666 77642   489999999 


Q ss_pred             CCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCC
Q psy951          165 PKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       165 ~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                            .|..|+..  .|.    + +|.|+|+|+..    ++|.|++||+|..|+....
T Consensus       417 ------~G~~C~~~--~C~----~-~C~~~g~C~~~----~~C~C~~G~~G~~C~~~~~  458 (463)
T 2wg3_C          417 ------EGDFCRTA--KCE----P-ACRHGGVCVRP----NKCLCKKGYLGPQCEQVDH  458 (463)
T ss_dssp             ------ESTTSCEE--CC-----------------------------------------
T ss_pred             ------CCCcCCcC--cCC----C-CCCCCCEECCC----CEEECCCCcccCCCCCCcc
Confidence                  67889521  122    1 79999999854    5899999999999998654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.63  E-value=9.1e-06  Score=76.92  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceeeeecc-ccEEEEEeCCCC
Q psy951           19 GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVF-ENNIYWLARDTG   97 (428)
Q Consensus        19 G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~-~~~lYwtD~~~~   97 (428)
                      |...+.+ .+...++.|.+.|+..+ .|||+|...+.|.+.+.+|. .+++...   ...|.++.+. +++||.++...+
T Consensus        34 ~~~~~~l-~~~~~~~egp~~~~~g~-~l~~~d~~~~~i~~~~~~g~-~~~~~~~---~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           34 DARLLTL-YDQATWSEGPAWWEAQR-TLVWSDLVGRRVLGWREDGT-VDVLLDA---TAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             TCCCEEE-ECCCSSEEEEEEEGGGT-EEEEEETTTTEEEEEETTSC-EEEEEES---CSCEEEEEECTTSCEEEEETTTT
T ss_pred             CCceEEE-ecCCcCccCCeEeCCCC-EEEEEECCCCEEEEEeCCCC-EEEEeCC---CCccceeeECCCCCEEEEECCCC
Confidence            4444444 45788999999998887 89999999999999999776 3444333   3456677765 578999988778


Q ss_pred             ceeeeccCC
Q psy951           98 SLYKQDKFG  106 (428)
Q Consensus        98 ~I~~~~~~g  106 (428)
                      .|.+.+.+|
T Consensus       108 ~v~~~~~~g  116 (305)
T 3dr2_A          108 AITRSDADG  116 (305)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            899988874

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.63  E-value=2e-08  Score=77.41  Aligned_cols=75  Identities=28%  Similarity=0.626  Sum_probs=55.8

Q ss_pred             CCCCCCCCC--CC-CccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCC
Q psy951          135 APNPCSQSP--CS-HLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~--C~-~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~  211 (428)
                      .+|+|..++  |. ..|++.+++|+|.|++|| .+.+.  +..|++.+++ ..  .  +|.  ++|++.. |+|.|.|+ 
T Consensus         2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~-~~~~~--g~~C~dideC-~~--~--~C~--~~C~n~~-g~y~C~C~-   69 (87)
T 1z6c_A            2 DVDECSLKPSICGTAVCKNIPGDFECECPEGY-RYNLK--SKSCEDIDEC-SE--N--MCA--QLCVNYP-GGYTCYCD-   69 (87)
T ss_dssp             CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTC-EEETT--TTEEECCCHH-HH--S--CCS--SEECCCS-SSCCEECC-
T ss_pred             ccccccCCCCCCCCCEeECCCCCEEEECCCCc-eECCC--CCcCCCcCee-CC--C--CCC--CEEEccC-CCEEEECC-
Confidence            468898776  83 399999999999999999 44332  5789876653 21  2  454  6999887 67999998 


Q ss_pred             CCccCccCCC
Q psy951          212 DFAGTFCENY  221 (428)
Q Consensus       212 gy~G~~Ce~~  221 (428)
                      |+.|..|+..
T Consensus        70 g~~G~~~~~~   79 (87)
T 1z6c_A           70 GKKGFKLAQD   79 (87)
T ss_dssp             SSSCCBCCTT
T ss_pred             CCcCCcccCC
Confidence            7777776654

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.59  E-value=2.9e-08  Score=69.02  Aligned_cols=47  Identities=26%  Similarity=0.574  Sum_probs=34.1

Q ss_pred             cccccCccCCCCCCCCCCCCCCCEEeeC----CCCceEecCCCCCccCccCCCCC
Q psy951          173 IRCSAAVERPRPLPRVCQCQNGGMCAES----ETGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       173 ~~C~~~~~~~~~~~~~c~C~ngg~C~~~----~~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      ..|....+.|...    +|+|||+|...    ..+.|.|.|++||+|.+||....
T Consensus         2 ~~c~~~~~eC~s~----pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            2 TSHLVKCAEKEKT----FCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             -CCEEECCSTTTT----TSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECC
T ss_pred             CCCcccCCCCcCC----CCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCc
Confidence            4565555544444    89999999632    23579999999999999998654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.59  E-value=3.1e-05  Score=72.53  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceeeeecc-ccEEEEEeCCC
Q psy951           18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVF-ENNIYWLARDT   96 (428)
Q Consensus        18 DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~-~~~lYwtD~~~   96 (428)
                      +|...+.+ ......|.|++.|+..+ .|||++...+.|.+.+.++. .+.+..   ....|.+|++. ++.||+++...
T Consensus        16 ~~~~~~~l-~~~~~~~eg~~~d~~g~-~l~~~~~~~~~i~~~~~~~~-~~~~~~---~~~~~~~l~~~~dg~l~v~~~~~   89 (296)
T 3e5z_A           16 AGAEARRL-ADGFTWTEGPVYVPARS-AVIFSDVRQNRTWAWSDDGQ-LSPEMH---PSHHQNGHCLNKQGHLIACSHGL   89 (296)
T ss_dssp             TTCCCEEE-ECCCSSEEEEEEEGGGT-EEEEEEGGGTEEEEEETTSC-EEEEES---SCSSEEEEEECTTCCEEEEETTT
T ss_pred             CCCcEEEE-ecCCccccCCeEeCCCC-EEEEEeCCCCEEEEEECCCC-eEEEEC---CCCCcceeeECCCCcEEEEecCC
Confidence            34444544 45788999999999877 89999999999999999998 555443   24567888864 67899998877


Q ss_pred             CceeeeccC
Q psy951           97 GSLYKQDKF  105 (428)
Q Consensus        97 ~~I~~~~~~  105 (428)
                      +.|.+.+..
T Consensus        90 ~~i~~~d~~   98 (296)
T 3e5z_A           90 RRLERQREP   98 (296)
T ss_dssp             TEEEEECST
T ss_pred             CeEEEEcCC
Confidence            888888874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.58  E-value=1.7e-05  Score=73.72  Aligned_cols=99  Identities=15%  Similarity=0.270  Sum_probs=70.9

Q ss_pred             EEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceee
Q psy951            2 FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPIS   81 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~   81 (428)
                      |+++.+.. +|.+.+.+|+.+...+......|.+|++|.. + +||+++...+.|.+.+.+|.........  ....|.+
T Consensus        71 ~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~--~~~~~~~  145 (299)
T 2z2n_A           71 WFTENAAN-KIGRITKKGIIKEYTLPNPDSAPYGITEGPN-G-DIWFTEMNGNRIGRITDDGKIREYELPN--KGSYPSF  145 (299)
T ss_dssp             EEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECTT-S-CEEEEETTTTEEEEECTTCCEEEEECSS--TTCCEEE
T ss_pred             EEeCCCCC-eEEEECCCCcEEEEeCCCcCCCceeeEECCC-C-CEEEEecCCceEEEECCCCCEEEecCCC--CCCCCce
Confidence            55554433 7888888876433222234668999999964 5 7999998889999999977655443333  3567888


Q ss_pred             eecc-ccEEEEEeCCCCceeeeccC
Q psy951           82 LDVF-ENNIYWLARDTGSLYKQDKF  105 (428)
Q Consensus        82 l~~~-~~~lYwtD~~~~~I~~~~~~  105 (428)
                      +.+. +++||+++...+.|.+.+..
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~~  170 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITES  170 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcCC
Confidence            8876 56899999888889888873

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.54  E-value=2.6e-08  Score=84.40  Aligned_cols=81  Identities=23%  Similarity=0.572  Sum_probs=59.3

Q ss_pred             CCCCCCCC---CCCC--ccccCCCcceecCCCCCCCCCCCC------CCcccccCccCCCCCCCCCCCCCCCEEeeCCCC
Q psy951          135 APNPCSQS---PCSH--LCLVIPGGYQCACPENATPKLPGV------AEIRCSAAVERPRPLPRVCQCQNGGMCAESETG  203 (428)
Q Consensus       135 ~~n~C~~~---~C~~--~C~~~~~~~~C~C~~g~~~~~~~~------~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g  203 (428)
                      .+++|...   +|.+  .|++.+++|+|.|++|| ...+..      .+..|++++++..   ..-+|.++++|++.. |
T Consensus        43 dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy-~g~~~~~~~~~~~~~~C~dideC~~---~~~~C~~~~~C~n~~-g  117 (143)
T 2bou_A           43 DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY-EPVSGAKTFKNESENTCQDVDECSS---GQHQCDSSTVCFNTV-G  117 (143)
T ss_dssp             ECCGGGC----CCCTTEEEEECSSCEEEEECTTE-EETTCCSCBSSGGGCCEEECCHHHH---TCCCCCTTSEEEECS-S
T ss_pred             ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCc-ccCcCccccccCCCCCcCCccCccC---cCCCCCCCCEEECCC-C
Confidence            56888864   7985  99999999999999999 433210      1347876654321   112688999999987 6


Q ss_pred             ceEecCCCCCccCccCC
Q psy951          204 DLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       204 ~~~C~C~~gy~G~~Ce~  220 (428)
                      +|+|.|++||.|..+..
T Consensus       118 ~y~C~C~~Gy~g~~~~~  134 (143)
T 2bou_A          118 SYSCRCRPGWKPRHGIP  134 (143)
T ss_dssp             CEEEECCSSSCBCTTCC
T ss_pred             CEEeeCCCCcccCCCCc
Confidence            89999999999877543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.50  E-value=2.9e-05  Score=73.98  Aligned_cols=93  Identities=14%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCC-------------------CCCceeEEEcCCCCCEEEEEECCCCeEEEEEc
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTG-------------------VRHPTGLSVDAAMDHTLYWVDSKLNTIESVRH   61 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~-------------------~~~P~glavD~~~~~~lYW~d~~~~~I~~~~l   61 (428)
                      ++|+|.... +|.+.+.++...+.+....                   ...|.||++|...+ +||.+|... .|.+++.
T Consensus        32 ~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~-~i~~~d~  108 (322)
T 2fp8_A           32 GFYTSVQDG-RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYY-HLSVVGS  108 (322)
T ss_dssp             SEEEECTTS-EEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTT-EEEEECT
T ss_pred             EEEEEcCCC-eEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCC-CEEEEeC
Confidence            589987654 8999988876555543211                   24799999997567 899999864 4888888


Q ss_pred             CCCCeEEEEeCC--CCccceeeeecc--ccEEEEEeCCC
Q psy951           62 DGRNRQTILSGS--DKLQHPISLDVF--ENNIYWLARDT   96 (428)
Q Consensus        62 dG~~~~~i~~~~--~~~~~p~~l~~~--~~~lYwtD~~~   96 (428)
                      ++...+++....  ..+..|-+|++.  +++||++|..+
T Consensus       109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~  147 (322)
T 2fp8_A          109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVST  147 (322)
T ss_dssp             TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCS
T ss_pred             CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcc
Confidence            865455554311  123457777765  47899999653

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.50  E-value=7.5e-08  Score=99.85  Aligned_cols=76  Identities=24%  Similarity=0.590  Sum_probs=58.5

Q ss_pred             CCCCCCCCCCCC--ccccCCCc-cee-cCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCC---EEeeCCCCceEe
Q psy951          135 APNPCSQSPCSH--LCLVIPGG-YQC-ACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG---MCAESETGDLTC  207 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~-~~C-~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg---~C~~~~~g~~~C  207 (428)
                      .+++|..++|.+  .|++..++ |+| .|++|| .   + .+..|++..+| ...  +-.|.+++   +|++.. +.|+|
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~Gy-t---G-dg~~CeDiDEC-~~~--p~~C~~gg~~~~CvNt~-gsY~C   72 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGF-L---G-NGTHCEDLDEC-ALV--PDICFSTSKVPRCVNTQ-PGFHC   72 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSCEEECCCCTTB-C---S-CSSSCCBCCTT-TTS--CCCSCCCSSSCCEEECS-SSEEE
T ss_pred             cccccCCCCCCCCCEEecCCCCCeECCcCCCcc-C---C-CCCCccccccc-cCC--CCcccCCccccceeecc-Cceec
Confidence            358898889987  99999865 999 999999 2   2 34889866653 222  21388988   999987 57999


Q ss_pred             c-CCCCCccCccC
Q psy951          208 N-CRQDFAGTFCE  219 (428)
Q Consensus       208 ~-C~~gy~G~~Ce  219 (428)
                      . |++||+|..|+
T Consensus        73 ~~C~~Gy~G~~c~   85 (634)
T 1yo8_A           73 LPCPPRYRGNQPV   85 (634)
T ss_dssp             CCCCTTEEECCCE
T ss_pred             ccCCCCcccCccc
Confidence            9 99999988754

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.50  E-value=1.2e-07  Score=91.09  Aligned_cols=70  Identities=31%  Similarity=0.690  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc-cCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCC
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS-AAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ  211 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~-~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~  211 (428)
                      ..++|..++|.+  .|.+..++|.|.|++||       .|..|+ +.++ |... ...+|.|  .|.+.. |.|.|.|++
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~-------~g~~C~~~~~e-C~~~-~~~~C~~--~C~~~~-g~~~C~C~~   71 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGY-------EGSNCELAKNE-CHPE-RTDGCQH--FCLPGQ-ESYTCSCAQ   71 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSC-------CSSSSCCCSSS-CCTT-CTTSCSS--EEECCS-SSCEEECCT
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCC-------cCCccccCccc-CCCC-CCCCCcC--ccccCC-CeeEEeccc
Confidence            458999999988  89999999999999999       678998 4444 3321 0126766  999877 679999999


Q ss_pred             CCccC
Q psy951          212 DFAGT  216 (428)
Q Consensus       212 gy~G~  216 (428)
                      ||.|.
T Consensus        72 g~~~~   76 (317)
T 3h5c_B           72 GYRLG   76 (317)
T ss_dssp             TEECC
T ss_pred             ccccc
Confidence            99963

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.44  E-value=2e-08  Score=69.32  Aligned_cols=32  Identities=28%  Similarity=0.633  Sum_probs=27.2

Q ss_pred             CCCCCCEEeeC---CCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAES---ETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~---~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|+|||+|+..   ..+.|.|.|++||+|.+||..
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            79999999863   235699999999999999864

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.41  E-value=5.9e-08  Score=85.94  Aligned_cols=74  Identities=19%  Similarity=0.364  Sum_probs=54.0

Q ss_pred             CCCCCCC-ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCC----CceEecCCCCCc
Q psy951          140 SQSPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESET----GDLTCNCRQDFA  214 (428)
Q Consensus       140 ~~~~C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~----g~~~C~C~~gy~  214 (428)
                      ..++|.| +|++..++|+|.|++|| ...+   +..|++.+++.. ....-+|.++++|++...    +.|.|.|++||+
T Consensus         9 ~~~pC~ng~C~~~~g~~~C~C~~G~-~g~~---~~~C~~id~C~~-~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~   83 (186)
T 1z1y_A            9 VDTICXNGQLVQMSNHFXCMCNEGL-VHLS---ENTCEEXNECXX-ETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYT   83 (186)
T ss_dssp             TTCCCBTEEEEECSSCEEEEECTTE-EEEE---TTEEEECCCCSG-GGTTSEEETTEEEEECSSTTSSCSEEEEECTTEE
T ss_pred             CCCCCCCCEeECCCCCeEeECCCCC-ccCC---CCccCCCCcccC-CCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCc
Confidence            3456777 89999999999999999 2221   248987654321 100226889999999874    689999999999


Q ss_pred             cCcc
Q psy951          215 GTFC  218 (428)
Q Consensus       215 G~~C  218 (428)
                      |..|
T Consensus        84 g~~~   87 (186)
T 1z1y_A           84 LXED   87 (186)
T ss_dssp             EETT
T ss_pred             cCCC
Confidence            8743

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.40  E-value=4.9e-08  Score=79.81  Aligned_cols=72  Identities=24%  Similarity=0.681  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCCCccccC-CCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCC
Q psy951          135 APNPCSQSPCSHLCLVI-PGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDF  213 (428)
Q Consensus       135 ~~n~C~~~~C~~~C~~~-~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy  213 (428)
                      .+|+|..++|+++|++. +++|+|.|++|| ..... ....|...   +  ...  +|.  ++|++ . +.|.|.|++||
T Consensus         3 dideC~~~pC~~~C~~~~~g~y~C~C~~Gy-~g~~~-~~~~C~~~---C--~~~--~C~--~~C~~-~-~~y~C~C~~Gy   69 (118)
T 1dx5_I            3 PVDPCFRANCEYQCQPLDQTSYLCVCAEGF-APIPH-EPHRCQMF---C--NQT--ACP--ADCDP-N-TQASCECPEGY   69 (118)
T ss_dssp             CCCGGGGCCCSSEEEECSSSCEEEECCTTE-EEETT-EEEEEEEC---C--CSS--EEE--CEECT-T-STTCEECCTTE
T ss_pred             ccccCCCCCCCCCCCCCCCCCEEeECCCCc-cccCC-CCCccccc---c--CCC--CCC--CcccC-C-CCeEeECCCCc
Confidence            46899889999999999 899999999999 22211 11234321   1  111  232  68877 3 67999999999


Q ss_pred             c---cCccC
Q psy951          214 A---GTFCE  219 (428)
Q Consensus       214 ~---G~~Ce  219 (428)
                      .   |..|+
T Consensus        70 ~~~~g~~C~   78 (118)
T 1dx5_I           70 ILDDGFICT   78 (118)
T ss_dssp             EEETTTEEE
T ss_pred             cCCCCCccc
Confidence            9   88885

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.38  E-value=3.3e-05  Score=75.16  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             EEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeC---CCCccceeeeecccc-----EEEEEeC
Q psy951           23 RSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG---SDKLQHPISLDVFEN-----NIYWLAR   94 (428)
Q Consensus        23 ~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~---~~~~~~p~~l~~~~~-----~lYwtD~   94 (428)
                      ..++.+++..|.+|++++. + +||.++.. ++|.+++ +|+ .+.+...   ...+..|.+|++..+     +||.++.
T Consensus        23 ~~~va~~l~~P~~ia~~pd-G-~l~V~e~~-g~I~~i~-~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPD-G-GMLIAERP-GRIRLFR-EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             EEEEECCCSCEEEEEECTT-S-CEEEEETT-TEEEEEE-TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEEECCCCCceEEEEcCC-C-eEEEEeCC-CeEEEEE-CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            3344568999999999975 5 69999976 9999999 775 3333321   114668999998765     9999986


Q ss_pred             CC-----CceeeeccCC
Q psy951           95 DT-----GSLYKQDKFG  106 (428)
Q Consensus        95 ~~-----~~I~~~~~~g  106 (428)
                      ..     .+|.+.+.++
T Consensus        98 ~~~~~~~~~v~r~~~~~  114 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLG  114 (352)
T ss_dssp             ECTTSSEEEEEEEEECS
T ss_pred             cCCCCCccEEEEEEeCC
Confidence            53     5688877664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.36  E-value=8.8e-05  Score=72.20  Aligned_cols=80  Identities=11%  Similarity=0.088  Sum_probs=57.6

Q ss_pred             EEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeC---CCCccceeeeeccc-----cEEEEEeC
Q psy951           23 RSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG---SDKLQHPISLDVFE-----NNIYWLAR   94 (428)
Q Consensus        23 ~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~---~~~~~~p~~l~~~~-----~~lYwtD~   94 (428)
                      ..++.+++..|.+|++++. + +||.++.. ++|.+++.+|.  +++..-   ......|.+|++..     ++||.++.
T Consensus        21 ~~~va~~l~~P~~ia~~pd-G-~l~V~e~~-g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           21 ISEVASDLEVPWSIAPLGG-G-RYLVTERP-GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEEECSCSCEEEEEEEET-T-EEEEEETT-TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEEeCCCCCCeEEEEcCC-C-eEEEEeCC-CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            3344568999999999974 6 79999987 99999987776  444321   11456789998874     59999985


Q ss_pred             C---C----CceeeeccCCC
Q psy951           95 D---T----GSLYKQDKFGR  107 (428)
Q Consensus        95 ~---~----~~I~~~~~~g~  107 (428)
                      .   .    .+|.+.+.++.
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~  115 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGS  115 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSS
T ss_pred             ccCCCCCcceEEEEEEECCC
Confidence            3   2    56777776643

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.35  E-value=2.6e-07  Score=95.85  Aligned_cols=85  Identities=19%  Similarity=0.504  Sum_probs=61.1

Q ss_pred             cCCCCCCCCCCCC--CCC-----ccccCCCcceec-CCCCCCCCCCC---------CCCcccccCccCCCCCCCCCCCCC
Q psy951          131 YNTSAPNPCSQSP--CSH-----LCLVIPGGYQCA-CPENATPKLPG---------VAEIRCSAAVERPRPLPRVCQCQN  193 (428)
Q Consensus       131 ~~~~~~n~C~~~~--C~~-----~C~~~~~~~~C~-C~~g~~~~~~~---------~~g~~C~~~~~~~~~~~~~c~C~n  193 (428)
                      .++ .+++|..++  |.+     .|++..++|+|. |++|| .....         ..+..|.+..+|..   .+-+|.+
T Consensus        40 ~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy-~G~~c~g~g~~~~~~dg~~C~dideC~~---~~~pC~~  114 (634)
T 1yo8_A           40 HCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY-RGNQPVGVGLEAAKTEKQVCEPENPCKD---KTHNCHK  114 (634)
T ss_dssp             SCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTE-EECCCEESSSHHHHSCCCCEEECCTTTT---TCCCCCT
T ss_pred             Ccc-ccccccCCCCcccCCccccceeeccCceecccCCCCc-ccCccccccccccccCCCcccccccccC---CCccccc
Confidence            343 678998776  987     799999999999 99999 32210         01234766554322   1236889


Q ss_pred             CCEEeeCC---CCceEecCCCCCcc--CccCC
Q psy951          194 GGMCAESE---TGDLTCNCRQDFAG--TFCEN  220 (428)
Q Consensus       194 gg~C~~~~---~g~~~C~C~~gy~G--~~Ce~  220 (428)
                      +++|++..   .|+|+|.|++||.|  ..|+.
T Consensus       115 ~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~  146 (634)
T 1yo8_A          115 HAECIYLGHFSDPMYKCECQTGYAGDGLICGE  146 (634)
T ss_dssp             TEEEEECCTTCSSSEEEEECTTEEESSSSEEE
T ss_pred             CccccccccccccceeeeccCCccccCccccc
Confidence            99999886   26799999999997  68873

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.33  E-value=4.3e-08  Score=84.86  Aligned_cols=83  Identities=25%  Similarity=0.495  Sum_probs=53.9

Q ss_pred             CCCCCCC-CCCCC-ccccCCCcceecCCCCCCCCCCCCCCcccccCcc-CCCCCCCCCCCCCCCEEeeCCC---CceEec
Q psy951          135 APNPCSQ-SPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE-RPRPLPRVCQCQNGGMCAESET---GDLTCN  208 (428)
Q Consensus       135 ~~n~C~~-~~C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~-~~~~~~~~c~C~ngg~C~~~~~---g~~~C~  208 (428)
                      .+|+|.. ++|.+ +|++.+++|+|.|++|| .+.+.  |..|++.++ .|.....+|.+.++++|++..+   +.|.|.
T Consensus         2 dideC~~~~~C~~~~C~n~~gsy~C~C~~Gy-~~~~~--g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~   78 (162)
T 1uzk_A            2 DVNECLDPTTCISGNCVNTPGSYICDCPPDF-ELNPT--RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC   78 (162)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTC-EECTT--SSBEECCCCEEEEEEC----------CEEEEEEEECHHHHH
T ss_pred             ccccCCCCCCCCCCEeECCCCCEEEeCCCCC-eECCC--CCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceee
Confidence            4688874 78864 99999999999999999 54432  689986543 1222223344457889987752   169999


Q ss_pred             CCCCCc-cCccCC
Q psy951          209 CRQDFA-GTFCEN  220 (428)
Q Consensus       209 C~~gy~-G~~Ce~  220 (428)
                      |++||. |..|+.
T Consensus        79 C~~G~~~~~~C~~   91 (162)
T 1uzk_A           79 CSLGKAWGTPCEM   91 (162)
T ss_dssp             TTTCCEETTTTEE
T ss_pred             CCCCCCcCCCccc
Confidence            999998 777874

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.33  E-value=1e-07  Score=84.48  Aligned_cols=81  Identities=20%  Similarity=0.404  Sum_probs=60.2

Q ss_pred             CCCCCCCCCCC--ccc----cCCCcceecCCCCCCCCCCCCCCcccccCc-cCCCCCCCCCCC-CCCCEEeeCCCCceEe
Q psy951          136 PNPCSQSPCSH--LCL----VIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQC-QNGGMCAESETGDLTC  207 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~----~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~-~~~~~~~~~c~C-~ngg~C~~~~~g~~~C  207 (428)
                      +++|..++|.+  .|+    +..++|+|.|++|| ...+. .+..|++.. ..|..     +| .++++|++.. |+|+|
T Consensus        91 ~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy-~g~~~-~~~~C~~~~~~~C~~-----~C~~~~~~C~n~~-g~y~C  162 (186)
T 1z1y_A           91 LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGX-VPNPE-DEXXCTXTGETACQL-----XCNTDNEVCXNVE-GVYXC  162 (186)
T ss_dssp             EGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEE-EEETT-TTTEEEEEECCCCCC-----CCCTTTEEEEEET-TEEEE
T ss_pred             CCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCC-cccCC-CCCcceEcCCCcccc-----cccccCcceecCC-CCeee
Confidence            46777777874  777    77789999999999 33221 237898752 22321     68 8999999987 78999


Q ss_pred             cCCCCCccCccCCCCCC
Q psy951          208 NCRQDFAGTFCENYTGI  224 (428)
Q Consensus       208 ~C~~gy~G~~Ce~~~~~  224 (428)
                      .|++||.|..|+.....
T Consensus       163 ~C~~G~~g~~~~~~~~~  179 (186)
T 1z1y_A          163 QCMEGFTFDXEXNVCLG  179 (186)
T ss_dssp             EECTTCEEETTTTEEES
T ss_pred             ECCCCCccCcccccCCc
Confidence            99999999999875543

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.31  E-value=1.5e-07  Score=79.95  Aligned_cols=29  Identities=31%  Similarity=0.942  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCCC-ccccCCCcceecCCCCC
Q psy951          135 APNPCSQSPCSH-LCLVIPGGYQCACPENA  163 (428)
Q Consensus       135 ~~n~C~~~~C~~-~C~~~~~~~~C~C~~g~  163 (428)
                      .+|+|..++|.+ +|++.+++|+|.|++||
T Consensus         3 dideC~~~pC~ng~C~n~~g~y~C~C~~G~   32 (147)
T 2w86_A            3 DIDECESSPCINGVCKNSPGSFICECSSES   32 (147)
T ss_dssp             CCCGGGGCCSBTSEEEEETTEEEEECCTTE
T ss_pred             cCccCcCCCCCCCEeECCCCCEEeECCCCc
Confidence            568898889987 99999999999999999

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.30  E-value=2.6e-07  Score=80.48  Aligned_cols=69  Identities=29%  Similarity=0.762  Sum_probs=49.9

Q ss_pred             CCCCC-CCC-ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccC
Q psy951          139 CSQSP-CSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       139 C~~~~-C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      |...+ |.+ .|+   ++++|.|++||       .|..|+.....+..   ..+|.|+|+|++...++|+|.|++||+|.
T Consensus        99 C~~~~~C~~g~C~---~~~~C~C~~G~-------~G~~C~~~~~~C~~---~~~C~~~g~C~~~~~~~~~C~C~~G~~G~  165 (169)
T 2vj2_A           99 CIPHPGCVHGICN---EPWQCLCETNW-------GGQLCDKDLNYCGT---HQPCLNGGTCSNTGPDKYQCSCPEGYSGP  165 (169)
T ss_dssp             ECCCTTCSSEECS---STTCCEECTTE-------ETTTTCEESCHHHH---TCCCCTTCEEEECSTTCEEEECCTTCCST
T ss_pred             CCCCCCCCCCCcC---CCCEEeCCCCC-------CCCcccCCCCCCCC---CCCCCCCCEEcCCCCCCcEeECCCCCcCc
Confidence            43343 665 666   56899999999       56888732221211   13799999999864467999999999999


Q ss_pred             ccCC
Q psy951          217 FCEN  220 (428)
Q Consensus       217 ~Ce~  220 (428)
                      .||.
T Consensus       166 ~Ce~  169 (169)
T 2vj2_A          166 NCEI  169 (169)
T ss_dssp             TSCC
T ss_pred             CcCC
Confidence            9974

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.29  E-value=1.7e-07  Score=76.58  Aligned_cols=67  Identities=27%  Similarity=0.517  Sum_probs=51.4

Q ss_pred             CCCCCCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccC
Q psy951          138 PCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       138 ~C~~~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      +|..++|...|++ .++|+|.|++|| .+.+   +..|.+++++...  .  +|  +++|++.. |+|.|.|++||.|.
T Consensus        45 ~C~~~~C~~~C~~-~~~y~C~C~~Gy-~~~~---g~~C~dideC~~~--~--~C--~~~C~n~~-g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           45 FCNQTACPADCDP-NTQASCECPEGY-ILDD---GFICTDIDECENG--G--FC--SGVCHNLP-GTFECICGPDSALA  111 (118)
T ss_dssp             CCCSSEEECEECT-TSTTCEECCTTE-EEET---TTEEEECCHHHHC--S--SC--SSEEEECS-SSEEEEECSSSSCE
T ss_pred             ccCCCCCCCcccC-CCCeEeECCCCc-cCCC---CCccccccccCCC--C--CC--cCeEEeCC-CCEEEECCCCCccC
Confidence            4777788889988 588999999999 3322   5889876654321  2  46  68999987 67999999999974

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.24  E-value=0.00014  Score=68.17  Aligned_cols=97  Identities=6%  Similarity=-0.061  Sum_probs=66.8

Q ss_pred             ccccceeEEeec----cCCCEEEEEecCCCeEEEeeeccccC-CceEEEEe---cc-ccceeeeeeccCCeEEEEeCCCC
Q psy951          321 SDERRIEALDID----PVDEIIYWVDSYDRNIRRSFMLEAQK-GQVQAVIS---DE-RRIEALDIDPVDEIIYWVDSYDR  391 (428)
Q Consensus       321 ~~~~~~~~l~~d----~~~~~lyWtd~~~~~I~ra~l~g~~~-~~~~~i~~---~~-~~p~glavD~~~~~lYwtd~~~~  391 (428)
                      .....+.+++++    +..+.||+++....+|.+..+++... ...+++..   .. ..|.+|++|.. ++||.++.+..
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~~  247 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTT
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC-CCEEEEEcCCC
Confidence            344567889999    87779999999888999888763100 11122222   12 67999999975 58999998878


Q ss_pred             cEEEEEcc-CcceeEEEecccCCCCCCCccccc
Q psy951          392 NIRRSFML-EAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       392 ~I~~~~~~-g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      .|.+.+.+ |+..+.+-     .|...|.++++
T Consensus       248 ~i~~~d~~~g~~~~~~~-----~~~~~~~~i~~  275 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIR-----CPFEKPSNLHF  275 (314)
T ss_dssp             EEEEECTTCBSCSEEEE-----CSSSCEEEEEE
T ss_pred             EEEEEcCCCCcEeEEEe-----CCCCCceeEEE
Confidence            89999988 65544432     33456677765

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.22  E-value=9.8e-07  Score=56.81  Aligned_cols=30  Identities=37%  Similarity=0.849  Sum_probs=27.3

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~  220 (428)
                      +|.|||+|++.. +.|.|.|++||+|..||.
T Consensus        10 pC~ngg~C~~~~-~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B           10 PCLNGGSCKDDI-NSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTCEEEEET-TEEEEECCTTCCSTTSCC
T ss_pred             CCCCCCEeEcCC-CceEeECCCCCcCCccCC
Confidence            799999999886 679999999999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.21  E-value=0.0024  Score=60.38  Aligned_cols=91  Identities=11%  Similarity=0.031  Sum_probs=65.3

Q ss_pred             ceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCccee
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG  404 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~  404 (428)
                      .+.+++++|..++||.++.....|....+..   .+....+ ....|.+++++..++.||.++...+.|.+.+.......
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSKAAEVLVVDTRN---GNILAKV-AAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESSSSEEEEEETTT---CCEEEEE-ECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEE-EcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            4678999999999999998888888877754   2222222 35668899999999999999998889999998654443


Q ss_pred             EEEecccCCCCCCCcccccc
Q psy951          405 QVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       405 ~l~~~~~~~~~~~p~~~~~~  424 (428)
                      ..+..     ...|.+++++
T Consensus       308 ~~~~~-----~~~~~~~~~s  322 (353)
T 3vgz_A          308 KTFDT-----PTHPNSLALS  322 (353)
T ss_dssp             EEEEC-----CSEEEEEEEC
T ss_pred             EEEec-----CCCCCeEEEc
Confidence            33321     1245666554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.20  E-value=0.00049  Score=65.15  Aligned_cols=82  Identities=9%  Similarity=0.058  Sum_probs=59.7

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceE-----EEEe--ccccceeeeeeccCCeEEEEeCCCCcEEE
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ-----AVIS--DERRIEALDIDPVDEIIYWVDSYDRNIRR  395 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~-----~i~~--~~~~p~glavD~~~~~lYwtd~~~~~I~~  395 (428)
                      ...+.++++++..++||+++....+|++..++.. .....     ....  +...|.+|++|.. ++||.++.+...|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDD-GVTIQPFGATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SSSEEEEEEEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCC-CcCcccccceEEEecCCCCCCCceEECCC-CCEEEEEcCCCEEEE
Confidence            4467899999998899999988889999888421 01111     1111  2347999999986 568888887778999


Q ss_pred             EEccCcceeEE
Q psy951          396 SFMLEAQKGQV  406 (428)
Q Consensus       396 ~~~~g~~~~~l  406 (428)
                      .+.+|+..+++
T Consensus       259 ~d~~g~~~~~~  269 (333)
T 2dg1_A          259 FNKRGYPIGQI  269 (333)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99887655544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.15  E-value=0.00042  Score=66.23  Aligned_cols=69  Identities=9%  Similarity=0.056  Sum_probs=53.7

Q ss_pred             CceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe-EEEEeCCCCccceeeeec-cccEEEEEeCCCCceeeeccCCC
Q psy951           32 HPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR-QTILSGSDKLQHPISLDV-FENNIYWLARDTGSLYKQDKFGR  107 (428)
Q Consensus        32 ~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~-~~i~~~~~~~~~p~~l~~-~~~~lYwtD~~~~~I~~~~~~g~  107 (428)
                      .|.+|++|  .+ +||.+....+.|..++...... ..+ ..   ...|.+|++ .+++||+++...++|.+.+..+.
T Consensus        45 ~~~~i~~~--~~-~lyv~~~~~~~v~viD~~t~~~~~~i-~~---~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~  115 (328)
T 3dsm_A           45 VAQSMVIR--DG-IGWIVVNNSHVIFAIDINTFKEVGRI-TG---FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY  115 (328)
T ss_dssp             CEEEEEEE--TT-EEEEEEGGGTEEEEEETTTCCEEEEE-EC---CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT
T ss_pred             cceEEEEE--CC-EEEEEEcCCCEEEEEECcccEEEEEc-CC---CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence            58999997  46 8999999899999999975444 444 32   567888887 67899999966778888876643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.14  E-value=0.00025  Score=68.21  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=66.2

Q ss_pred             ceeEEeeccCCCEEEEEecCCCeEEEeeeccccC---CceE-----EEEeccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK---GQVQ-----AVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~---~~~~-----~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      .+.+|++++..+.||+++....+|++...+....   ...+     ....+...|.||++|.. ++||.++.....|.+.
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~  274 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD-HNIYVGDLAHSAIGVI  274 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT-CCEEEEEGGGTEEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC-CCEEEEccCCCeEEEE
Confidence            3568999999999999999888999987532100   1111     11123458999999986 7999999999999999


Q ss_pred             Ec-cCcceeEEEecccCCCCCCCcccccc
Q psy951          397 FM-LEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       397 ~~-~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +. +|+. +++....   ....|.+++++
T Consensus       275 d~~~G~~-~~~~~~~---~~~~p~~va~~  299 (343)
T 2qe8_A          275 TSADRAY-KLLVTDE---KLSWTDSFNFG  299 (343)
T ss_dssp             ETTTTEE-EEEEECG---GGSCEEEEEEC
T ss_pred             ECCCCCE-EEEEECC---ceecCCeeEEC
Confidence            99 8864 3344221   14567777764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.10  E-value=0.0007  Score=64.59  Aligned_cols=94  Identities=11%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeec---c-ccCCceEEEEe---ccccceeeeeeccCCeEEEEeCCCCcEEE
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFML---E-AQKGQVQAVIS---DERRIEALDIDPVDEIIYWVDSYDRNIRR  395 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~---g-~~~~~~~~i~~---~~~~p~glavD~~~~~lYwtd~~~~~I~~  395 (428)
                      ...+.++++++..+.|||+|....+|++..++   | . -...+++..   ....|.|+++|..+ +||.+..+...|.+
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~-~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~  255 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP-TGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDR  255 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB-SSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEE
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCc-ccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEE
Confidence            44577999999999999999888899999886   3 1 112233332   34679999999764 68888877778999


Q ss_pred             EEccCcceeEEEecccCCCCCCCccccc
Q psy951          396 SFMLEAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       396 ~~~~g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      .+.+|+..+++.     .|...|.+++.
T Consensus       256 ~d~~g~~~~~i~-----~~~~~~~~~af  278 (326)
T 2ghs_A          256 YDTDGNHIARYE-----VPGKQTTCPAF  278 (326)
T ss_dssp             ECTTCCEEEEEE-----CSCSBEEEEEE
T ss_pred             ECCCCCEEEEEE-----CCCCCcEEEEE
Confidence            888776544432     33344556554

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.10  E-value=1.7e-06  Score=57.55  Aligned_cols=33  Identities=30%  Similarity=0.737  Sum_probs=27.8

Q ss_pred             CCCCCCEEee-CCCCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAE-SETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~-~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      +|+|||+|.. ...+.|.|.|++||+|.+||...
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            7999999984 33467999999999999998753

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.10  E-value=2.7e-06  Score=58.79  Aligned_cols=34  Identities=32%  Similarity=0.787  Sum_probs=28.4

Q ss_pred             CCCCCCEEee-CCCCceEecCCCCCccCccCCCCC
Q psy951          190 QCQNGGMCAE-SETGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~-~~~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      +|+|||+|+. ...+.|.|.|++||+|.+||....
T Consensus        13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A           13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             SSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             cCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccCc
Confidence            7999999993 233679999999999999998654

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.02  E-value=7.9e-08  Score=88.78  Aligned_cols=80  Identities=11%  Similarity=-0.006  Sum_probs=61.2

Q ss_pred             CCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCC----CCCCCC--------------------
Q psy951          136 PNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPR----PLPRVC--------------------  189 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~----~~~~~c--------------------  189 (428)
                      .++|.+.+|.+  +|++...+|+|.||.||       .|..|+...+.+.    ....+|                    
T Consensus        99 ~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf-------~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~  171 (267)
T 4fbr_A           99 NIVAVSIKSNDGGKTLTGTTTYNGEGPIGF-------KSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVD  171 (267)
T ss_dssp             CEEEEEEECSSTTSEEEEEEEETTSCCEEE-------EEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEE
T ss_pred             ccccCCCCCCCCCEEecCCccEEeeCCCCc-------cccCCCCCcccccccCCcCCccccCCcceecccccccccccCC
Confidence            35788888988  99999999999999999       5677776543210    000111                    


Q ss_pred             -CCCCCCEEeeCCCCceEecCCCCCccCccCCCCC
Q psy951          190 -QCQNGGMCAESETGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       190 -~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                       +|.|+|+|++.. ++|+|.||+||+|..|+....
T Consensus       172 ~~c~ngg~C~dg~-~~y~C~Cp~Gf~G~~c~~~i~  205 (267)
T 4fbr_A          172 AKSNDGGKTLSGT-MTYNGEGPIGFRGTLTSPDTY  205 (267)
T ss_dssp             EECSSTTSEEEEE-EEETTSCCEEEEEEEEETTEE
T ss_pred             CCCCCCCEeeCCC-CCeEEeCCCCccccccccccc
Confidence             599999999877 579999999999999987654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.01  E-value=0.00076  Score=65.37  Aligned_cols=101  Identities=20%  Similarity=0.262  Sum_probs=67.6

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEE-----eCCCCCceeEEEcCC---CCCEEEEEECCC-----CeEEEEEcCCC---
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLV-----MTGVRHPTGLSVDAA---MDHTLYWVDSKL-----NTIESVRHDGR---   64 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~-----~~~~~~P~glavD~~---~~~~lYW~d~~~-----~~I~~~~ldG~---   64 (428)
                      ||.++..  .+|.+.+ ||+. +.+.     ..+...|.||++++.   ++ +||.++...     ++|.+.++++.   
T Consensus        44 l~V~e~~--g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g-~lYv~~~~~~~~~~~~v~r~~~~~~~~~  118 (352)
T 2ism_A           44 MLIAERP--GRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEP-YVYAYRTVAEGGLRNQVVRLRHLGERGV  118 (352)
T ss_dssp             EEEEETT--TEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEEEECTTSSEEEEEEEEECSSCEE
T ss_pred             EEEEeCC--CeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCC-EEEEEEecCCCCCccEEEEEEeCCCCcC
Confidence            4667754  4788888 7753 3332     234678999999987   67 899998754     78999999874   


Q ss_pred             CeEEEEeC----CCCccceeeeecc-ccEEEEEeCC-------------CCceeeeccCC
Q psy951           65 NRQTILSG----SDKLQHPISLDVF-ENNIYWLARD-------------TGSLYKQDKFG  106 (428)
Q Consensus        65 ~~~~i~~~----~~~~~~p~~l~~~-~~~lYwtD~~-------------~~~I~~~~~~g  106 (428)
                      ..++++..    ......|-+|.+. .++||+++-.             .++|.|++.+|
T Consensus       119 ~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          119 LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            34555441    1133456666654 5699999742             25677777765

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.01  E-value=2.7e-06  Score=71.79  Aligned_cols=65  Identities=17%  Similarity=0.369  Sum_probs=44.8

Q ss_pred             ccccCCCcceecCCCCCCCCCC----CCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccC
Q psy951          147 LCLVIPGGYQCACPENATPKLP----GVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE  219 (428)
Q Consensus       147 ~C~~~~~~~~C~C~~g~~~~~~----~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce  219 (428)
                      .|++   .|+|.|++|| ...+    . .+..|++.+++....  ..+|.++++|++.. +.|+|.|++||+|..|+
T Consensus        14 ~C~~---~~~C~C~~G~-~g~~~~~~~-~~~~C~dideC~~~~--~~~C~~~~~C~n~~-g~y~C~C~~Gy~g~~~~   82 (143)
T 2bou_A           14 SCVN---ATACRCNPGF-SSFSEIITT-PMETCDDINECATLS--KVSCGKFSDCWNTE-GSYDCVCSPGYEPVSGA   82 (143)
T ss_dssp             EESS---SSCEEECTTE-ECSSSSBCS-TTCCCEECCGGGC------CCCTTEEEEECS-SCEEEEECTTEEETTCC
T ss_pred             EEcC---CCEEeCCCCC-cCccccccC-CCCcCCccccccCCC--CCCCCCCCEEEcCC-CCeEeECCCCcccCcCc
Confidence            5554   4899999999 3211    1 136887766543221  12588999999987 67999999999998554

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.01  E-value=2.4e-06  Score=58.93  Aligned_cols=35  Identities=23%  Similarity=0.576  Sum_probs=28.9

Q ss_pred             CCCCCCEEee-CCCCceEecCCCCCccCccCCCCCC
Q psy951          190 QCQNGGMCAE-SETGDLTCNCRQDFAGTFCENYTGI  224 (428)
Q Consensus       190 ~C~ngg~C~~-~~~g~~~C~C~~gy~G~~Ce~~~~~  224 (428)
                      +|+|||+|.. ...+.|.|.|++||+|.+||.....
T Consensus        13 pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~~~   48 (53)
T 1nql_B           13 YCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLK   48 (53)
T ss_dssp             EECTTCEEEEETTTTEEEEEECTTEESTTSCEECSS
T ss_pred             CCCCCeEEeeecCCCCEEEecCCCCcCCCCCcCCcc
Confidence            7999999983 3346799999999999999976543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.98  E-value=0.0048  Score=57.89  Aligned_cols=79  Identities=6%  Similarity=0.015  Sum_probs=61.4

Q ss_pred             cccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCce---EEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEc
Q psy951          322 DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV---QAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM  398 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~---~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~  398 (428)
                      ....|.+++++|..++||-++....+|..-.+..   ...   ...+..-..|.+++++..++.||.+..+.+.|.+.++
T Consensus       174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQN---PENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---TTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             CCCCccceEECCCCCEEEEEeCCCCeEEEEECCC---CcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            3446889999999999999998888887777754   222   2233444789999999999999999998888999888


Q ss_pred             cCcce
Q psy951          399 LEAQK  403 (428)
Q Consensus       399 ~g~~~  403 (428)
                      .....
T Consensus       251 ~~~~~  255 (331)
T 3u4y_A          251 LSGTL  255 (331)
T ss_dssp             TTTEE
T ss_pred             CCCce
Confidence            75544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.96  E-value=0.0018  Score=62.77  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEE-----eCCCCCceeEEEcCC---CCCEEEEEECC---C----CeEEEEEcCCC-
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLV-----MTGVRHPTGLSVDAA---MDHTLYWVDSK---L----NTIESVRHDGR-   64 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~-----~~~~~~P~glavD~~---~~~~lYW~d~~---~----~~I~~~~ldG~-   64 (428)
                      ||.++..  .+|.+.+.||.  +++.     ..+...|.||++|+.   ++ +||.++..   .    ++|.+.++++. 
T Consensus        42 l~V~e~~--g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~  116 (354)
T 3a9g_A           42 YLVTERP--GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKS-WVYLYASYFAEGGHIRNRVIRGRLDGST  116 (354)
T ss_dssp             EEEEETT--TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEEEEECGGGCEEEEEEEEEECSSS
T ss_pred             EEEEeCC--CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCC-EEEEEEeccCCCCCcceEEEEEEECCCC
Confidence            4677765  48988887886  4432     234568999999986   67 89999864   3    68999999876 


Q ss_pred             ----CeEEEEeC--CCCccceeeeecc-ccEEEEEeCC-------------CCceeeeccCCCC-------ceeeeccCC
Q psy951           65 ----NRQTILSG--SDKLQHPISLDVF-ENNIYWLARD-------------TGSLYKQDKFGRG-------VPVLISKDL  117 (428)
Q Consensus        65 ----~~~~i~~~--~~~~~~p~~l~~~-~~~lYwtD~~-------------~~~I~~~~~~g~~-------~~~~~~~~~  117 (428)
                          ..++++..  ......|-+|.+. .++||+++-.             .++|+|++.+|+-       ..+++..++
T Consensus       117 ~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~  196 (354)
T 3a9g_A          117 FKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH  196 (354)
T ss_dssp             CCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC
T ss_pred             cCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc
Confidence                24555431  1123445556653 6689999632             3689999998751       245666777


Q ss_pred             CCCccccccc
Q psy951          118 VNPSGVKAYH  127 (428)
Q Consensus       118 ~~p~~I~v~~  127 (428)
                      .+|.+|.+..
T Consensus       197 rnp~Gla~d~  206 (354)
T 3a9g_A          197 RNPQGIDWHR  206 (354)
T ss_dssp             SCCCEEEECT
T ss_pred             CCcceEEEeC
Confidence            7888887654

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.94  E-value=6e-06  Score=59.22  Aligned_cols=35  Identities=29%  Similarity=0.733  Sum_probs=29.1

Q ss_pred             CCCCCCEEeeC----CCCceEecCCCCCccCccCCCCCC
Q psy951          190 QCQNGGMCAES----ETGDLTCNCRQDFAGTFCENYTGI  224 (428)
Q Consensus       190 ~C~ngg~C~~~----~~g~~~C~C~~gy~G~~Ce~~~~~  224 (428)
                      +|+|||+|+..    ..+.|.|.|++||+|.+||.....
T Consensus        13 pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~   51 (63)
T 1hae_A           13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             TSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             cCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCc
Confidence            79999999872    346799999999999999875543

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.92  E-value=3.9e-06  Score=59.00  Aligned_cols=36  Identities=25%  Similarity=0.489  Sum_probs=28.9

Q ss_pred             CCCCCCEEeeC---CCCceEecCCCCCccCccCCCCCCC
Q psy951          190 QCQNGGMCAES---ETGDLTCNCRQDFAGTFCENYTGIG  225 (428)
Q Consensus       190 ~C~ngg~C~~~---~~g~~~C~C~~gy~G~~Ce~~~~~~  225 (428)
                      +|+|||+|...   ..+.|.|.|++||+|.+||......
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~~~~   53 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDN   53 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEECCCC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcccCCCC
Confidence            69999999842   3356999999999999999865443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.91  E-value=4.8e-05  Score=71.66  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             CeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcC---CC--CeEEEEeCCCCccceeeeec
Q psy951           10 PRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHD---GR--NRQTILSGSDKLQHPISLDV   84 (428)
Q Consensus        10 ~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ld---G~--~~~~i~~~~~~~~~p~~l~~   84 (428)
                      .+|.+.+.+|+...  +...+..|+||++++..+ .|||+|...++|.+.++|   |.  +++++..-......|.++++
T Consensus       130 ~~l~~~d~~g~~~~--~~~~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          130 GALYSLFPDHHVKK--YFDQVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             EEEEEECTTSCEEE--EEEEESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             cEEEEEECCCCEEE--EeeccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            36888888875433  334577899999999888 899999999999999985   32  24555543212457888887


Q ss_pred             c-ccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccc
Q psy951           85 F-ENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAY  126 (428)
Q Consensus        85 ~-~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~  126 (428)
                      . +++||.+++..++|.+.+.+++.....+......|..+...
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            5 67999999988899999987443433443333455555543

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.89  E-value=6e-06  Score=55.08  Aligned_cols=32  Identities=25%  Similarity=0.681  Sum_probs=26.7

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      +|.| |+|.... .+.|.|.|++||+|.+||...
T Consensus        13 pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~~   45 (46)
T 1k36_A           13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHFF   45 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTTSCCCC
T ss_pred             CCCC-CEeeccCCCCCEEEECCCCCccCCCCccc
Confidence            7889 7998754 257999999999999999753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.86  E-value=0.011  Score=54.90  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CCceeEEEcCCCCCEEEEEEC--CCCeEEEEEcCCCCe-EEEEeCCCCccceeeeeccccEEEEEeCCCCceeeeccCC
Q psy951           31 RHPTGLSVDAAMDHTLYWVDS--KLNTIESVRHDGRNR-QTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        31 ~~P~glavD~~~~~~lYW~d~--~~~~I~~~~ldG~~~-~~i~~~~~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      ..|.||+++.. + +||-+..  +.++|..+++..... +.+.-.  ...++.++++.+++||.+.|..+.++..+...
T Consensus        21 ~f~~Gl~~~~d-g-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~--~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           21 AFTQGLVYAEN-D-TLFESTGLYGRSSVRQVALQTGKVENIHKMD--DSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CCEEEEEECST-T-EEEEEECSTTTCEEEEEETTTCCEEEEEECC--TTCCEEEEEEETTEEEEEETTCSEEEEEETTT
T ss_pred             CCcccEEEeCC-C-eEEEECCCCCCCEEEEEECCCCCEEEEEecC--CCcceEEEEEeCCEEEEEEecCCEEEEEECCC
Confidence            46899999965 6 8999975  468999999975443 333323  35667788999999999999999999998763

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.83  E-value=5e-06  Score=57.87  Aligned_cols=41  Identities=17%  Similarity=0.418  Sum_probs=33.8

Q ss_pred             CCCCC--CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCcc
Q psy951          137 NPCSQ--SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       137 n~C~~--~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      |+|..  .+|++.|++.+++|+|.|++|| .+..+  +.+|.++++
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy-~L~~d--~~~C~dide   44 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGY-TLADN--GKACIPTGP   44 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTE-EECTT--SSCEEESSS
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCC-EECCC--CCeeccCcc
Confidence            67874  4799999999999999999999 66554  588987664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.81  E-value=0.0011  Score=64.36  Aligned_cols=85  Identities=6%  Similarity=-0.068  Sum_probs=56.0

Q ss_pred             CCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeC----CCCccceeeeecc-----ccE
Q psy951           18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG----SDKLQHPISLDVF-----ENN   88 (428)
Q Consensus        18 DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~----~~~~~~p~~l~~~-----~~~   88 (428)
                      +|-..+++.. ++..|.+|++++..+ +||.++. .++|.+++.+|...+.+...    ......|.+|++.     +++
T Consensus         6 ~g~~~~~va~-~l~~P~~i~~~pdG~-~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~   82 (353)
T 2g8s_A            6 ATVNVEVLQD-KLDHPWALAFLPDNH-GMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR   82 (353)
T ss_dssp             CCSEEEEEEE-EESSEEEEEECSTTC-CEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE
T ss_pred             CCcEEEEEEC-CCCCcEEEEEcCCCC-EEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE
Confidence            4444444444 789999999998643 3999997 58999998877533222211    0124457788876     689


Q ss_pred             EEEEeCC-------CCceeeeccC
Q psy951           89 IYWLARD-------TGSLYKQDKF  105 (428)
Q Consensus        89 lYwtD~~-------~~~I~~~~~~  105 (428)
                      ||.++..       ..+|.+.+.+
T Consensus        83 lYv~~~~~~~~g~~~~~v~r~~~~  106 (353)
T 2g8s_A           83 IWLSYSEVGDDGKAGTAVGYGRLS  106 (353)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCceeEEEEEEEC
Confidence            9999754       2356666654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.78  E-value=9.1e-05  Score=74.74  Aligned_cols=194  Identities=14%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             CCeEEEEEcCCCC-------------------cEEEEeCCCCCceeEEEcCCCC---C--EEEEEEC-CC----CeEEEE
Q psy951            9 SPRIESAWMDGSH-------------------RRSLVMTGVRHPTGLSVDAAMD---H--TLYWVDS-KL----NTIESV   59 (428)
Q Consensus         9 ~~~I~~a~~DG~~-------------------~~~l~~~~~~~P~glavD~~~~---~--~lYW~d~-~~----~~I~~~   59 (428)
                      ..+|.|.+.||+.                   +..|+..++..|-||++|+.++   .  ++|-+|. +.    ..|..+
T Consensus       176 ~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i  255 (463)
T 2wg3_C          176 TGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQI  255 (463)
T ss_dssp             TTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEE
T ss_pred             CeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeee
Confidence            3689999999951                   3346777999999999998753   1  3666775 22    233333


Q ss_pred             EcCCCCe----EEEEeCCCCccceeeeecccc--------EEEEEeCCCCceeeeccCCCC---ceeeeccC--------
Q psy951           60 RHDGRNR----QTILSGSDKLQHPISLDVFEN--------NIYWLARDTGSLYKQDKFGRG---VPVLISKD--------  116 (428)
Q Consensus        60 ~ldG~~~----~~i~~~~~~~~~p~~l~~~~~--------~lYwtD~~~~~I~~~~~~g~~---~~~~~~~~--------  116 (428)
                      . .|.+.    .++......-..|.++.++.+        .++..|+. ++|++...+...   ....+..+        
T Consensus       256 ~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  333 (463)
T 2wg3_C          256 I-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGY  333 (463)
T ss_dssp             C-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSC
T ss_pred             c-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCccccccc
Confidence            1 23322    122222101145777777544        48889986 779888765332   11222111        


Q ss_pred             -CCCCccccccccc-ccCCCCCCCCCCCCCCC---ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCC--
Q psy951          117 -LVNPSGVKAYHAQ-RYNTSAPNPCSQSPCSH---LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVC--  189 (428)
Q Consensus       117 -~~~p~~I~v~~~~-~~~~~~~n~C~~~~C~~---~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c--  189 (428)
                       ...|.++.+..+. .|-......-....=..   +..+......+.|..+|       .+..|...         .|  
T Consensus       334 ~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p~~~~~p~~C~~~~-------~g~~c~~~---------~C~~  397 (463)
T 2wg3_C          334 FSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATV-------QPAQTLTS---------ECSR  397 (463)
T ss_dssp             CCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECTTSCSSCGGGCCCC-------CCCCCCCC---------HHHH
T ss_pred             ccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCcccccccccCCCCC-------cCCCCccc---------cccC
Confidence             1234444433221 11110000000000000   01011112346777777       34556431         22  


Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIG  225 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~  225 (428)
                      +|.| |+|...    .+|.|++||+|..|+...+..
T Consensus       398 ~C~n-G~C~~~----~~C~C~~G~~G~~C~~~~C~~  428 (463)
T 2wg3_C          398 LCRN-GYCTPT----GKCCCSPGWEGDFCRTAKCEP  428 (463)
T ss_dssp             HCCS-EEECTT----SCEEECTTEESTTSCEECC--
T ss_pred             CCCC-CccCCC----CeECCCCCcCCCcCCcCcCCC
Confidence            5888 799753    479999999999998665543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.77  E-value=0.026  Score=52.65  Aligned_cols=75  Identities=15%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Ee----c---cccceeeeeeccCCeEEEEeCCCCcEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--IS----D---ERRIEALDIDPVDEIIYWVDSYDRNIR  394 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~----~---~~~p~glavD~~~~~lYwtd~~~~~I~  394 (428)
                      ..|.+++++|..++||.++....+|....++.. ++..+.+  +.    +   ...|.+++++..++.||.+......|.
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~  256 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLIT  256 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEE
Confidence            467899999999999999988888877777542 1222211  11    1   235668999999999999998888999


Q ss_pred             EEEcc
Q psy951          395 RSFML  399 (428)
Q Consensus       395 ~~~~~  399 (428)
                      +.+++
T Consensus       257 v~d~~  261 (343)
T 1ri6_A          257 VFSVS  261 (343)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99987

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.76  E-value=8.8e-06  Score=59.34  Aligned_cols=43  Identities=26%  Similarity=0.573  Sum_probs=35.7

Q ss_pred             CCCCCCC--CCCCCccccCCC-cceecCCCCCCCCCCCCCCcccccCcc
Q psy951          135 APNPCSQ--SPCSHLCLVIPG-GYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       135 ~~n~C~~--~~C~~~C~~~~~-~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      .+|+|..  ++|+|.|++.++ +|+|.|++|| .|.++  +++|.+.++
T Consensus         4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy-~L~~D--~~tC~d~de   49 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGY-SLLAD--GVSCTPTVE   49 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETTTEEEEECCTTE-EECTT--SSCEEECSS
T ss_pred             ccccccCCCCCcCCEeEcCCCCCEEEeCCCCC-eECCC--CCcccCccc
Confidence            5689974  479999999998 7999999999 77654  689988664

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=97.76  E-value=5.2e-07  Score=83.31  Aligned_cols=73  Identities=15%  Similarity=0.066  Sum_probs=55.0

Q ss_pred             CCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccC------CCCCC----------------CCC---CCCCCC
Q psy951          143 PCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVER------PRPLP----------------RVC---QCQNGG  195 (428)
Q Consensus       143 ~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~------~~~~~----------------~~c---~C~ngg  195 (428)
                      +|.+  .|++...+|.|.||.||       .+..|+...+.      +...+                ..|   +|+|||
T Consensus        39 ~c~ngG~C~~g~~~y~C~Cp~Gf-------~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s~pC~ngG  111 (267)
T 4fbr_A           39 KSDDGGKTLKGTMTYNGEGPIGF-------RGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGG  111 (267)
T ss_dssp             ECSSTTSEEEEEEEETTSCCEEE-------EEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEEEECSSTT
T ss_pred             CcCCCCeecCCCCCeEEeCCCCc-------ccccccccccccccccCcCCCcccCCCeeeccCccccccccCCCCCCCCC
Confidence            4555  88998899999999999       56777654432      11110                122   699999


Q ss_pred             EEeeCCCCceEecCCCCCccCccCCCCC
Q psy951          196 MCAESETGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       196 ~C~~~~~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      +|++.. ++|+|.|+.||+|..|+....
T Consensus       112 ~C~~~~-~sy~C~C~~Gf~G~~Ce~~~d  138 (267)
T 4fbr_A          112 KTLTGT-TTYNGEGPIGFKSEVTDGDTY  138 (267)
T ss_dssp             SEEEEE-EEETTSCCEEEEEEECCCCEE
T ss_pred             EEecCC-ccEEeeCCCCccccCCCCCcc
Confidence            999877 579999999999999998653

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.73  E-value=1.7e-05  Score=56.19  Aligned_cols=31  Identities=23%  Similarity=0.581  Sum_probs=27.9

Q ss_pred             CCCCC--CEEeeCCCCceEecCCCCCc-cCccCCC
Q psy951          190 QCQNG--GMCAESETGDLTCNCRQDFA-GTFCENY  221 (428)
Q Consensus       190 ~C~ng--g~C~~~~~g~~~C~C~~gy~-G~~Ce~~  221 (428)
                      ||.||  |+|++.. +.|.|.|++||+ |..|+..
T Consensus        18 PC~nga~gtC~~~~-g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B           18 PCGPEAAGTCKETN-SGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             SSCSSSCCEEEECS-SEEEEECCTTEEEEECSSSC
T ss_pred             CCcCCCccccccCC-CceEeECCCCCccCCCCCCC
Confidence            79999  9999987 679999999999 9999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.71  E-value=0.019  Score=53.92  Aligned_cols=103  Identities=12%  Similarity=0.089  Sum_probs=69.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCC----CeEEEEEcCCCCeEEEEeCCCCc
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKL----NTIESVRHDGRNRQTILSGSDKL   76 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~----~~I~~~~ldG~~~~~i~~~~~~~   76 (428)
                      |||++.... .|.+.+.++...+.+.......|.+|++|+. + +||.++...    +.|.+.+.++...+.++......
T Consensus        58 l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d-g-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           58 LFLLDVFEG-NIFKINPETKEIKRPFVSHKANPAAIKIHKD-G-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             EEEEETTTC-EEEEECTTTCCEEEEEECSSSSEEEEEECTT-S-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             EEEEECCCC-EEEEEeCCCCcEEEEeeCCCCCcceEEECCC-C-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            467776544 7988888866655554334468999999965 5 699988766    68999999988766554421123


Q ss_pred             cceeeeecc-ccEEEEEeCC------CCceeeeccCC
Q psy951           77 QHPISLDVF-ENNIYWLARD------TGSLYKQDKFG  106 (428)
Q Consensus        77 ~~p~~l~~~-~~~lYwtD~~------~~~I~~~~~~g  106 (428)
                      ..|.++.+. ++++|+++..      .+.|++.+.++
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence            456666654 5688888764      34577766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.70  E-value=0.021  Score=53.44  Aligned_cols=80  Identities=16%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             cccceeEEeeccCCCEEEEEecCCCe-EEEeeeccccCCce----EEEEeccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          322 DERRIEALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQV----QAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~~~~-I~ra~l~g~~~~~~----~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      ....+.+++++|..++||-++....+ |..-.++..  +..    ...+..-..|.+++++..++.||.++.....|.+.
T Consensus       126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  203 (331)
T 3u4y_A          126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD--GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL  203 (331)
T ss_dssp             CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT--CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCccceEECCCCCEEEEEecCCCceEEEEEECCC--CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence            34467899999999999999988776 776666541  111    12233445699999999999999999988899999


Q ss_pred             EccCcce
Q psy951          397 FMLEAQK  403 (428)
Q Consensus       397 ~~~g~~~  403 (428)
                      ++.....
T Consensus       204 d~~~~~~  210 (331)
T 3u4y_A          204 ETQNPEN  210 (331)
T ss_dssp             ECSSTTS
T ss_pred             ECCCCcc
Confidence            9875443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.69  E-value=0.035  Score=52.10  Aligned_cols=62  Identities=10%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             ceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCC
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSY  389 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~  389 (428)
                      .+.++++++..+++|-++....+|....+..   .+....+..-..|.+++++..++.||.+...
T Consensus       273 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          273 ESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            3568999999999999998888888777654   2233334444579999999999999998875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.68  E-value=0.00026  Score=66.12  Aligned_cols=102  Identities=7%  Similarity=-0.060  Sum_probs=75.9

Q ss_pred             eeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          317 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       317 ~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      ..+..+...+.++++|+..+.|||++...++|++...++   . .+.+......|.+|++|.. ++||+++.+...|.+.
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---~-~~~~~~~~~~~~~l~~~~d-g~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---Q-LSPEMHPSHHQNGHCLNKQ-GHLIACSHGLRRLERQ   95 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---C-EEEEESSCSSEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---C-eEEEECCCCCcceeeECCC-CcEEEEecCCCeEEEE
Confidence            334467788999999999999999999999999998887   3 4444446678999999985 5699999988889999


Q ss_pred             Ec-cCcceeEEEecccCCCCCCCcccccc
Q psy951          397 FM-LEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       397 ~~-~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +. +|+. +.+.......+...|.+++++
T Consensus        96 d~~~g~~-~~~~~~~~~~~~~~~~~i~~d  123 (296)
T 3e5z_A           96 REPGGEW-ESIADSFEGKKLNSPNDVCLA  123 (296)
T ss_dssp             CSTTCCE-EEEECEETTEECCCCCCEEEC
T ss_pred             cCCCCcE-EEEeeccCCCCCCCCCCEEEC
Confidence            98 5554 444433223344556667665

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.67  E-value=1.7e-05  Score=54.19  Aligned_cols=36  Identities=14%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCcc
Q psy951          142 SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       142 ~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      ++|+|.|++.+++|+|.|++|| .+.++  +++|.++++
T Consensus         6 g~C~~~C~n~~gs~~C~C~~Gy-~L~~d--~~tC~dide   41 (51)
T 1kig_L            6 GGCDQFCREERSEVRCSCAHGY-VLGDD--SKSCVSTER   41 (51)
T ss_dssp             TSSSSCCCEETTEECCCCCTTE-EECTT--SSCEEECSS
T ss_pred             CCcCCEeEcCCCCeEEeCCCCc-EECCC--CCccccCCc
Confidence            4799999999999999999999 66554  688988664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.63  E-value=0.025  Score=54.51  Aligned_cols=80  Identities=14%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             EEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeC----CCCccceeeeecc-----ccEEEEEe--
Q psy951           25 LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG----SDKLQHPISLDVF-----ENNIYWLA--   93 (428)
Q Consensus        25 l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~----~~~~~~p~~l~~~-----~~~lYwtD--   93 (428)
                      ++.+++..|.+|++++. + +||.++...++|.+++.++.....+...    ......|++|++.     ++.||.+.  
T Consensus        26 ~va~gL~~P~~ia~~pd-G-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           26 TVATGLNSPWGLAPLPG-G-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEECCCSSEEEEEECTT-S-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             EeecCCCCceEEEEcCC-C-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            45678999999999975 5 6999998899999998765444443221    1145678899885     57788764  


Q ss_pred             CCCCceeeeccCC
Q psy951           94 RDTGSLYKQDKFG  106 (428)
Q Consensus        94 ~~~~~I~~~~~~g  106 (428)
                      ....+|.|....+
T Consensus       104 ~~~~~v~R~~~~~  116 (347)
T 3das_A          104 ASDNRIVRMLYDE  116 (347)
T ss_dssp             SSSEEEEEEEBCT
T ss_pred             CCCCEEEEEEeCC
Confidence            3456788877664

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.61  E-value=2.7e-05  Score=53.50  Aligned_cols=39  Identities=28%  Similarity=0.710  Sum_probs=30.2

Q ss_pred             CCCCCCC----------CCCCCccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCSQ----------SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~~----------~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      .+|+|..          .+|++.|++.+++|.|.|++|| .+...  +.+|.
T Consensus         3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy-~~~~d--~~~C~   51 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY-ELQED--RHSCQ   51 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTC-EECTT--SSCEE
T ss_pred             ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCC-eECCC--CCccC
Confidence            4577764          5799999999999999999999 55432  45564

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.61  E-value=3.3e-05  Score=49.43  Aligned_cols=35  Identities=26%  Similarity=0.664  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      ..++|..++|.+  .|++..++|+|.|++||       .|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~-------~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGF-------EGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTC-------CSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCC-------cCCccC
Confidence            358899899988  89999999999999999       566664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.56  E-value=0.00061  Score=64.16  Aligned_cols=104  Identities=12%  Similarity=0.046  Sum_probs=77.7

Q ss_pred             ceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEE
Q psy951          315 RFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIR  394 (428)
Q Consensus       315 ~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~  394 (428)
                      ....+..+...+.+..+|+..+.|||+|....+|+|-..+|    +.+++......|.|+++|.. ++||+++.+...|.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~~~~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~  110 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVDVLLDATAFTNGNAVDAQ-QRLVHCEHGRRAIT  110 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEEEEEESCSCEEEEEECTT-SCEEEEETTTTEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEEEEeCCCCccceeeECCC-CCEEEEECCCCEEE
Confidence            34445678888999999999999999999999999987765    34455455678999999986 46999999888899


Q ss_pred             EEEccCcceeEEEecccCCCCCCCcccccc
Q psy951          395 RSFMLEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       395 ~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +.+.+|+. +++.......+...|.+++++
T Consensus       111 ~~~~~g~~-~~~~~~~~~~~~~~~~~i~~d  139 (305)
T 3dr2_A          111 RSDADGQA-HLLVGRYAGKRLNSPNDLIVA  139 (305)
T ss_dssp             EECTTSCE-EEEECEETTEECSCCCCEEEC
T ss_pred             EECCCCCE-EEEEeccCCCccCCCCCEEEC
Confidence            99998764 344332223344556666665

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.50  E-value=4.1e-05  Score=53.95  Aligned_cols=35  Identities=23%  Similarity=0.531  Sum_probs=29.6

Q ss_pred             CCCCCccccCC-CcceecCCCCCCCCCCCCCCcccccCc
Q psy951          142 SPCSHLCLVIP-GGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       142 ~~C~~~C~~~~-~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|+|.|++.+ ++|.|.|++|| .|.++  +++|.+..
T Consensus         7 ggC~~~C~n~~~gs~~C~C~~Gy-~L~~D--~~tC~d~~   42 (59)
T 2wph_E            7 GRCEQFCKNSADNKVVCSCTEGY-RLAEN--QKSCEPAV   42 (59)
T ss_dssp             GGCSSEEEECSTTCEEEECCTTE-EECTT--SSCEEESS
T ss_pred             CCcCCEeEeCCCCCEEeeCCCCc-EECCC--CCcccCCC
Confidence            47999999999 69999999999 77654  68998754

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.49  E-value=8.7e-05  Score=73.88  Aligned_cols=60  Identities=30%  Similarity=0.727  Sum_probs=44.2

Q ss_pred             CCcceecCCCCCCCCCCCCCCcccccCccC----CCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCC
Q psy951          152 PGGYQCACPENATPKLPGVAEIRCSAAVER----PRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       152 ~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~----~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      +++++|.|++||       .|..|+.....    ..+ ..+|+|.|+|+|....    .|.|++||+|..||....
T Consensus       260 ~~~~~C~C~~G~-------~G~~C~~~C~~G~~G~~C-~~~C~C~ngg~C~~~~----~C~C~~G~~G~~Ce~~~~  323 (423)
T 2gy5_A          260 PDPYGCSCATGW-------KGLQCNEACHPGFYGPDC-KLRCSCNNGEMCDRFQ----GCLCSPGWQGLQCEREGI  323 (423)
T ss_dssp             TTTTEEECCBTC-------BSGGGCBCCCTTBCSBTT-CCBCCCTTCCEEETTT----EEECCTTCBSTTSCBCSS
T ss_pred             CCCCeEEeCCCc-------ccccccCccCCCCcCCcc-cccccCCCCCEecCCC----ceECCCCCcCCCCccCcc
Confidence            467999999999       67888752110    011 1257899999998654    399999999999998643

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.48  E-value=3.9e-05  Score=80.64  Aligned_cols=72  Identities=21%  Similarity=0.507  Sum_probs=51.4

Q ss_pred             CCCCCCCCC--ccccCCCcce---ecCCCCCCCCCCCCCCcccccCc--------cCCCCCCCCCCCCCCCEEeeCCCCc
Q psy951          138 PCSQSPCSH--LCLVIPGGYQ---CACPENATPKLPGVAEIRCSAAV--------ERPRPLPRVCQCQNGGMCAESETGD  204 (428)
Q Consensus       138 ~C~~~~C~~--~C~~~~~~~~---C~C~~g~~~~~~~~~g~~C~~~~--------~~~~~~~~~c~C~ngg~C~~~~~g~  204 (428)
                      +|..++|.+  .|.+..+.+.   |.|++||       .|..|+...        ..|...+..-+|.|+|+|..     
T Consensus       436 ~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy-------~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~-----  503 (690)
T 3fcs_B          436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGW-------LGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC-----  503 (690)
T ss_dssp             GGGTTCCTTCTTTTTTSEEEETTEEEECTTC-------CSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS-----
T ss_pred             CCcCCCCCCCCcccCCCCeEeCCceEeCCCc-------cCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC-----
Confidence            566777776  7876667777   9999999       678886443        11222111124899999973     


Q ss_pred             eEecCC----CCCccCccCCC
Q psy951          205 LTCNCR----QDFAGTFCENY  221 (428)
Q Consensus       205 ~~C~C~----~gy~G~~Ce~~  221 (428)
                      +.|.|+    +||.|..||..
T Consensus       504 g~C~C~~~~~~Gy~G~~Ce~~  524 (690)
T 3fcs_B          504 GQCVCHSSDFGKITGKYCECD  524 (690)
T ss_dssp             SSEEECCCSSCCCBSTTSCBC
T ss_pred             CeeEeecCCCCCeeCCCcCcc
Confidence            479999    99999999853

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.47  E-value=8.7e-05  Score=71.28  Aligned_cols=51  Identities=31%  Similarity=0.782  Sum_probs=32.3

Q ss_pred             cceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCC
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      .+.|.|++||       .|..|+...  |..     +|.|+|+|..    .+.|.|++||.|..|+...
T Consensus       164 ~~~C~C~~G~-------~G~~C~~~~--C~~-----~C~~~G~C~~----~~~C~C~~G~~G~~C~~~~  214 (324)
T 2ygq_A          164 RRICECPDGF-------HGPHCEKAL--CTP-----RCMNGGLCVT----PGFCICPPGFYGVNCDKAN  214 (324)
T ss_dssp             TSCEECCTTE-------ESSSSCEES--SSS-----CCCTTCEECS----SCCEECCTTCBTTTTCBCC
T ss_pred             CCeEECCCCC-------cCCCCCCCC--CCC-----CCCCCCEEcC----CCEEeCCCCccCCCcccCc
Confidence            4788888888       567776421  111     4667777754    2457777777777776543

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.44  E-value=4.5e-05  Score=52.74  Aligned_cols=38  Identities=26%  Similarity=0.589  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCC--ccc-----cCCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          135 APNPCSQSPCSH--LCL-----VIPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~-----~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ..|+|.++||+|  +|.     +..++|+|.|++||       .|..|+...
T Consensus         7 ~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~-------~G~~CE~~v   51 (55)
T 3u7u_G            7 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEF-------TGDRCQNYV   51 (55)
T ss_dssp             ECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTE-------ESTTSCEEC
T ss_pred             cCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCC-------cCCCcCccC
Confidence            468999999999  994     55679999999999       688887543

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.42  E-value=3.7e-05  Score=52.88  Aligned_cols=36  Identities=28%  Similarity=0.637  Sum_probs=30.3

Q ss_pred             CCCCCccccCCC-cceecCCCCCCCCCCCCCCcccccCcc
Q psy951          142 SPCSHLCLVIPG-GYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       142 ~~C~~~C~~~~~-~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      ++|+|.|++.++ +|+|.|++|| .+.++  +++|.+.++
T Consensus         7 ggC~~~C~n~~ggs~~C~C~~Gy-~L~~D--g~tC~d~de   43 (53)
T 2bz6_L            7 GGCEQYCSDHTGTKRSCRCHEGY-SLLAD--GVSCTPTVE   43 (53)
T ss_dssp             GGCSSEEEEETTTEEEEECCTTE-EECTT--SSCEEECSS
T ss_pred             CCcCCEeEcCCCCCEEeeCCCCC-EECCC--CCcccCCcc
Confidence            479999999998 6999999999 77654  689988764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.42  E-value=0.0078  Score=60.38  Aligned_cols=74  Identities=11%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCC------CCccceeeeecc-----cc
Q psy951           19 GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGS------DKLQHPISLDVF-----EN   87 (428)
Q Consensus        19 G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~------~~~~~p~~l~~~-----~~   87 (428)
                      |-..+ ++.+++..|.+|++++. + +||.++...++|.+++.++....++..-.      .....+++|++.     ++
T Consensus        16 gf~~~-~~a~~l~~P~~~a~~pd-G-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g   92 (454)
T 1cru_A           16 NFDKK-VILSNLNKPHALLWGPD-N-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (454)
T ss_dssp             TSCEE-EEECCCSSEEEEEECTT-S-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             CeEEE-EEECCCCCceEEEEcCC-C-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence            43444 44568999999999975 5 69999988789999987533344443211      024456788887     78


Q ss_pred             EEEEEeCC
Q psy951           88 NIYWLARD   95 (428)
Q Consensus        88 ~lYwtD~~   95 (428)
                      .||.++..
T Consensus        93 ~lYv~~s~  100 (454)
T 1cru_A           93 YIYISGTF  100 (454)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999853

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.42  E-value=0.087  Score=49.60  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Ee-ccccceeeeeeccCCeEEEEeCCCCcEEEEEccC
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--IS-DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE  400 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~-~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g  400 (428)
                      ..+.+++++|..++||.++....+|..-.++..  +..+.+  +. .-..|.+++++..++.||.++...+.|.+-.+|.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            468899999999999999988887776666531  223333  22 3457999999999999999999888888886653

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.38  E-value=9.7e-05  Score=60.32  Aligned_cols=35  Identities=37%  Similarity=0.925  Sum_probs=29.0

Q ss_pred             CCCCCCCEEeeCC--CCceEecCCCCCccCccCCCCC
Q psy951          189 CQCQNGGMCAESE--TGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       189 c~C~ngg~C~~~~--~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      |+|+|||+|.+..  .+.+.|.|++||+|..||+...
T Consensus         1 ~pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~   37 (122)
T 2fd6_A            1 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   37 (122)
T ss_dssp             CCCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS
T ss_pred             CCCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc
Confidence            5899999998863  3434999999999999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.35  E-value=0.096  Score=48.63  Aligned_cols=98  Identities=12%  Similarity=0.050  Sum_probs=66.3

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--EeccccceeeeeeccCCeEEEEeCCCCcEEEEEccC
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE  400 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g  400 (428)
                      ...+.+++++|..++||.++.....|..-.++... ...+.+  +..-..|.+++++..++.||.+....+.|.+-.+|.
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-CCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-CceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            44677899999999999999888878777776211 223333  333344999999999999999998878888886663


Q ss_pred             --cceeEEEecccCCCCCCCcccccc
Q psy951          401 --AQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       401 --~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                        ...+.+..  +.. -..|.++++.
T Consensus       309 ~~g~~~~~~~--~~~-g~~p~~i~~~  331 (343)
T 1ri6_A          309 EQGLLHEKGR--YAV-GQGPMWVVVN  331 (343)
T ss_dssp             TTTEEEEEEE--EEC-SSSCCEEEEE
T ss_pred             CCceeeEccc--ccc-CCCCeeEEEE
Confidence              22233321  112 2567777764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.32  E-value=0.12  Score=49.05  Aligned_cols=76  Identities=7%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             ccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Ee----ccccceeeeeeccCCeEEEEeCC-CCcE
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--IS----DERRIEALDIDPVDEIIYWVDSY-DRNI  393 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~----~~~~p~glavD~~~~~lYwtd~~-~~~I  393 (428)
                      .....|++++|+|..++||-++....+|....++.   +..+.+  +.    ....|.+++++..++.||.++.+ .+.|
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            33456889999999999999998777777666653   222222  11    34568899999999999999998 8889


Q ss_pred             EEEEcc
Q psy951          394 RRSFML  399 (428)
Q Consensus       394 ~~~~~~  399 (428)
                      .+-+++
T Consensus       285 ~v~~~~  290 (361)
T 3scy_A          285 AIFKVD  290 (361)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            998886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.31  E-value=0.13  Score=49.19  Aligned_cols=80  Identities=11%  Similarity=0.109  Sum_probs=59.1

Q ss_pred             ccceeEEeeccCCCEEEEEec--CCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccC
Q psy951          323 ERRIEALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE  400 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~--~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g  400 (428)
                      ...+.+++++|..++||-+..  ...+|+.-.+..   .+....+..-..|.+++++..++.||.+......|.+-++..
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---CeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            346778999999999999876  566777766654   323333444456889999999999999988888999999875


Q ss_pred             cceeE
Q psy951          401 AQKGQ  405 (428)
Q Consensus       401 ~~~~~  405 (428)
                      .....
T Consensus       276 ~~~~~  280 (391)
T 1l0q_A          276 NTITA  280 (391)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            44433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.30  E-value=0.017  Score=55.85  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             ccccccceeEEeeccCCCEEEEEecCCCeEEEeeecccc-CCceEEEEeccccceeeeeeccCCeEEEEe
Q psy951          319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ-KGQVQAVISDERRIEALDIDPVDEIIYWVD  387 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~-~~~~~~i~~~~~~p~glavD~~~~~lYwtd  387 (428)
                      +.+++..|-||+++|..++||.+|...++|++-.+++.. -...+++ .--..|+|+++|..+++||.+.
T Consensus       216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence            457788999999999999999999999999999997421 1122233 4346899999998667887755

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.24  E-value=0.0078  Score=56.57  Aligned_cols=103  Identities=15%  Similarity=0.050  Sum_probs=72.3

Q ss_pred             CEEEeeCCC-CeEEEEEc-CCCCcEEEEe-CCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEE-e-----
Q psy951            1 MFWAETGAS-PRIESAWM-DGSHRRSLVM-TGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTIL-S-----   71 (428)
Q Consensus         1 lyWtd~~~~-~~I~~a~~-DG~~~~~l~~-~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~-~-----   71 (428)
                      ||.+|.+.. .+|.+.+. +|+- +.+.. .....|+|++++ ..+ ++|.+|...+.|.+++.++...++.. .     
T Consensus        85 l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~g~~~~-~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           85 LVATGWNADSIPVVSLVKSDGTV-ETLLTLPDAIFLNGITPL-SDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCE-EEEEECTTCSCEEEEEES-SSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             EEEEeccCCcceEEEEcCCCCeE-EEEEeCCCccccCccccc-CCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            467776543 24777654 4543 33333 356789999985 456 89999998999999998865333321 1     


Q ss_pred             --CCCCccceeeeeccccEEEEEeCCCCceeeeccCC
Q psy951           72 --GSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        72 --~~~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g  106 (428)
                        ....+..|-+|+..+++||++|..+++|++.+.++
T Consensus       162 ~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          162 SNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             SSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             ccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCC
Confidence              11245678888777889999999999999999874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.23  E-value=0.14  Score=48.12  Aligned_cols=99  Identities=7%  Similarity=0.050  Sum_probs=65.8

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Eec-------cccceeeeeeccCCeEEEEeCCCCcEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--ISD-------ERRIEALDIDPVDEIIYWVDSYDRNIR  394 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~~-------~~~p~glavD~~~~~lYwtd~~~~~I~  394 (428)
                      ..|.+++++|..++||-++....+|....++.. .+....+  +..       ...|.+++++..++.||.++.+.+.|.
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence            467889999999999999988887777666642 1222222  111       145889999999999999999888999


Q ss_pred             EEEccCcceeEEEecccCCCCCCCcccccc
Q psy951          395 RSFMLEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       395 ~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +-+++.....+.+... ...-..|++++++
T Consensus       266 v~~~~~~g~~~~~~~~-~~~~~~~~~~~~s  294 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQI-STEGDFPRDFDLD  294 (347)
T ss_dssp             EEEECGGGCEEEEEEE-ECSSSCCCEEEEC
T ss_pred             EEEECCCCcEEEeEEE-ecCCCCcCeEEEC
Confidence            9998733222222111 2223456666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.22  E-value=0.093  Score=48.40  Aligned_cols=67  Identities=12%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             eeEEEcCCCCCEEEEEECCCCeEEEEEcCCCC-eEEEEeCCCCccceeeeeccccEEEEEeCCCCceeeeccCC
Q psy951           34 TGLSVDAAMDHTLYWVDSKLNTIESVRHDGRN-RQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        34 ~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~-~~~i~~~~~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      .||++|  .+ +||-+....++|.++++.... .+.++.   ......++++.+++||...|..+.++..+...
T Consensus        58 qGL~~~--~~-~Ly~stG~~g~v~~iD~~Tgkv~~~~l~---~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           58 QGLVFH--QG-HFFESTGHQGTLRQLSLESAQPVWMERL---GNIFAEGLASDGERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             EEEEEE--TT-EEEEEETTTTEEEECCSSCSSCSEEEEC---TTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred             ceEEEE--CC-EEEEEcCCCCEEEEEECCCCcEEeEECC---CCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence            799998  46 999999999999999997543 344433   23445669999999999999999999998764

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=97.18  E-value=0.00021  Score=48.32  Aligned_cols=32  Identities=25%  Similarity=0.652  Sum_probs=26.0

Q ss_pred             CCCCCCEEee-CCCCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAE-SETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~-~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      .|.| |+|.. ...+.+.|.|++||+|.+||...
T Consensus        15 yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~~   47 (50)
T 1iox_A           15 YCIK-GRCRFVVAEQTPSCVCDEGYIGARCERVD   47 (50)
T ss_dssp             SCTT-CCEEEETTTTEEEECCCTTEETTTTCEEC
T ss_pred             cccC-CEEEeEcCCCCeEEECCCCcccCCCCeec
Confidence            6999 78953 33467999999999999999753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.15  E-value=0.13  Score=47.29  Aligned_cols=98  Identities=6%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             eeEEeeccCCCEEEEEecCCC-eEEEeeeccccC-CceEEEEe-------ccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          326 IEALDIDPVDEIIYWVDSYDR-NIRRSFMLEAQK-GQVQAVIS-------DERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       326 ~~~l~~d~~~~~lyWtd~~~~-~I~ra~l~g~~~-~~~~~i~~-------~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      ..||+||+..+.||=+.-... .|++..  |... ...+++-.       .+..+.||++|..+++||......+.+-..
T Consensus       123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~  200 (255)
T 3qqz_A          123 FEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEV  200 (255)
T ss_dssp             CEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEE
Confidence            458999999988888765544 788876  3111 12333311       355789999999999999999999999999


Q ss_pred             EccCcceeEEEecc----cCCCCCCCccccccc
Q psy951          397 FMLEAQKGQVQAGA----SRHQNGVPASSQRNL  425 (428)
Q Consensus       397 ~~~g~~~~~l~~~~----~~~~~~~p~~~~~~~  425 (428)
                      +.+|.-+..+-=..    +.+-..-|-+||++-
T Consensus       201 d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          201 TLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             CTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred             cCCCCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence            99998666554222    122234566676653

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.13  E-value=0.0002  Score=71.28  Aligned_cols=65  Identities=23%  Similarity=0.603  Sum_probs=45.1

Q ss_pred             CCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCccCC----CCCCCCC----CCCCCCEEeeCCCCceEecCCCC
Q psy951          143 PCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERP----RPLPRVC----QCQNGGMCAESETGDLTCNCRQD  212 (428)
Q Consensus       143 ~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~----~~~~~~c----~C~ngg~C~~~~~g~~~C~C~~g  212 (428)
                      +|++  .|.+  ..++|.|++||       .|..|+......    .+. .+|    .|.+++.|..   +.+.|.|++|
T Consensus       204 ~C~~~G~C~~--~~g~C~C~~G~-------~G~~Ce~~C~~g~~g~~C~-~~C~~~~~C~~~g~C~~---~~~~C~C~~G  270 (423)
T 2gy5_A          204 ACMNNGVCHE--DTGECICPPGF-------MGRTCEKACELHTFGRTCK-ERCSGQEGCKSYVFCLP---DPYGCSCATG  270 (423)
T ss_dssp             CCCTTCEECT--TTCCEECCTTE-------ESTTSCEECCTTEESTTSC-EECCSTTTTTTCCEEET---TTTEEECCBT
T ss_pred             CCCCCCEEEC--CCCcEeCCCCc-------cCCCcccccCCCCCCCCcC-ccCCCCCCCCCCCEECC---CCCeEEeCCC
Confidence            5655  6765  46799999999       678887531110    000 122    4788889953   4689999999


Q ss_pred             CccCccCC
Q psy951          213 FAGTFCEN  220 (428)
Q Consensus       213 y~G~~Ce~  220 (428)
                      |.|..|+.
T Consensus       271 ~~G~~C~~  278 (423)
T 2gy5_A          271 WKGLQCNE  278 (423)
T ss_dssp             CBSGGGCB
T ss_pred             cccccccC
Confidence            99999986

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.13  E-value=0.099  Score=49.81  Aligned_cols=96  Identities=8%  Similarity=-0.052  Sum_probs=69.8

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe------cccccee-eeeeccCCeEEEEeCCCCcEEEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS------DERRIEA-LDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~------~~~~p~g-lavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      ..+-||+|+|..+.|+=.+. .++|.|..+...  ...++-++      .+..|+| |+++..++.||.++.....+.+.
T Consensus       185 ~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~  261 (334)
T 2p9w_A          185 PGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP--YAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFR  261 (334)
T ss_dssp             CSCSEEEEETTTTEEEEESS-SSSEEEEECSSS--SCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             cCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC--cceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEE
Confidence            34669999999999999998 889999998842  22123222      4678999 58898888889999887788888


Q ss_pred             EccCcceeEEEecccCCCCCCCcccccc
Q psy951          397 FMLEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       397 ~~~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +.|| -+.--+.+....++. +.++++.
T Consensus       262 S~Dg-W~sa~~~g~~~~~~~-~~g~tt~  287 (334)
T 2p9w_A          262 SWDN-WKSANIKKTKRSELQ-NSGFTAV  287 (334)
T ss_dssp             CSST-TSEEEEEEEECGGGG-SSCEEEE
T ss_pred             CCCC-cceeEEeeeecCccc-cCceeEE
Confidence            8899 555444455455444 6666554

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.10  E-value=0.0003  Score=48.28  Aligned_cols=37  Identities=24%  Similarity=0.550  Sum_probs=30.0

Q ss_pred             CCCCCCC---CCCC--ccc--cCCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          136 PNPCSQS---PCSH--LCL--VIPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       136 ~n~C~~~---~C~~--~C~--~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      +++|..+   +|.|  +|+  +..++|.|.|++||       .|..|+...
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~-------~G~~Ce~~~   46 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGY-------SGDRCQTRD   46 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTC-------CSSSSCCCS
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCC-------cCCcCCccC
Confidence            4678775   8988  899  77789999999999       678887543

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.09  E-value=0.00033  Score=67.23  Aligned_cols=50  Identities=30%  Similarity=0.607  Sum_probs=34.0

Q ss_pred             cceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .+.|.|++||       .|..|+...  |.     .+|.|+|+|...    ++|.|++||+|..|+..
T Consensus       196 ~~~C~C~~G~-------~G~~C~~~~--C~-----~~C~~~G~C~~~----~~C~C~~G~~G~~C~~~  245 (324)
T 2ygq_A          196 PGFCICPPGF-------YGVNCDKAN--CS-----TTCFNGGTCFYP----GKCICPPGLEGEQCEIS  245 (324)
T ss_dssp             SCCEECCTTC-------BTTTTCBCC--CS-----SCCCSSCCBSCS----SCBCCCTTCCTTTTC--
T ss_pred             CCEEeCCCCc-------cCCCcccCc--CC-----CCCCCCCeeCCC----CeeeCCCCccCCCCCcC
Confidence            4789999999       567786431  11     257788888642    56888888888888754

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.09  E-value=0.00032  Score=47.28  Aligned_cols=31  Identities=26%  Similarity=0.649  Sum_probs=25.8

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .|.|| +|.... .+.+.|.|++||+|.+||..
T Consensus        15 yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 3e50_C           15 FCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA   46 (50)
T ss_pred             cccCC-EEeeccCCCCeEEECCCCCcccCCCce
Confidence            68897 998643 35699999999999999874

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=97.07  E-value=0.00035  Score=58.74  Aligned_cols=37  Identities=35%  Similarity=0.917  Sum_probs=29.3

Q ss_pred             CCCCCCCCCEEeeCC-CCce-EecCCCCCccCccCCCCC
Q psy951          187 RVCQCQNGGMCAESE-TGDL-TCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       187 ~~c~C~ngg~C~~~~-~g~~-~C~C~~gy~G~~Ce~~~~  223 (428)
                      ..|+|+|||+|.... .+.+ .|.|++||.|.+|++...
T Consensus        11 ~~cpC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~   49 (145)
T 2i9a_A           11 SNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   49 (145)
T ss_dssp             -CCCCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             CCCCCCCCCCcCCCccccCCccccCCCCCCCCceecccc
Confidence            567999999997752 1335 899999999999998754

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.07  E-value=5.6e-05  Score=53.48  Aligned_cols=37  Identities=27%  Similarity=0.741  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCC----ccccCCCcceecCCCCCCCCCCCCC-CcccccC
Q psy951          135 APNPCSQSPCSH----LCLVIPGGYQCACPENATPKLPGVA-EIRCSAA  178 (428)
Q Consensus       135 ~~n~C~~~~C~~----~C~~~~~~~~C~C~~g~~~~~~~~~-g~~C~~~  178 (428)
                      ..++|.++||.+    +|++.+++|.|.|++||       . |..|+..
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy-------~~G~~C~~~   51 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGY-------RISLDGTGN   51 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTE-------EEEECSSSC
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCC-------ccCCCCCCC
Confidence            568898889986    69999999999999999       5 6777643

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=97.05  E-value=0.00049  Score=46.40  Aligned_cols=30  Identities=30%  Similarity=0.801  Sum_probs=24.6

Q ss_pred             CCCCCCEEee-CCCCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAE-SETGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~-~~~g~~~C~C~~gy~G~~Ce~  220 (428)
                      .|.|| +|.. ...+.+.|.|+.||+|.+||.
T Consensus        19 yC~nG-~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           19 FCIHG-ECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             TCSSS-EEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             cCCCC-EEEEecCCCCeeEECCCCcccccccc
Confidence            68885 9973 334579999999999999986

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.04  E-value=0.00039  Score=73.05  Aligned_cols=61  Identities=25%  Similarity=0.572  Sum_probs=43.3

Q ss_pred             CCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc--cCccCCCCCCCCCCCCCCCEEeeCCCCceEecC-CCCCccCc
Q psy951          143 PCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS--AAVERPRPLPRVCQCQNGGMCAESETGDLTCNC-RQDFAGTF  217 (428)
Q Consensus       143 ~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~--~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C-~~gy~G~~  217 (428)
                      +|++  .|..    +.|.|++||       .|..|+  .....|... ...+|.++|+|..   +  .|.| ++||.|..
T Consensus       535 ~C~~~G~C~~----g~C~C~~Gy-------~G~~CeC~~~~~~C~~~-~g~~C~~~G~C~~---g--~C~C~~~Gy~G~~  597 (690)
T 3fcs_B          535 MCSGHGQCSC----GDCLCDSDW-------TGYYCNCTTRTDTCMSS-NGLLCSGRGKCEC---G--SCVCIQPGSYGDT  597 (690)
T ss_dssp             BGGGSEEEET----TEEEECTTE-------ESSSSCEECCCTTTBCT-TSSBTSSSCEEET---T--EEECCSTTCBSTT
T ss_pred             CCCCCCEecC----CeeECcCCC-------cCCCCccCCCCCcccCC-CCCCCCCCCEEeC---C--EEECCCCCccCCC
Confidence            4544  5543    799999999       678887  222223221 1246999999974   2  7999 99999999


Q ss_pred             cCC
Q psy951          218 CEN  220 (428)
Q Consensus       218 Ce~  220 (428)
                      |+.
T Consensus       598 Ce~  600 (690)
T 3fcs_B          598 CEK  600 (690)
T ss_dssp             SCB
T ss_pred             cCc
Confidence            998

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.04  E-value=0.00021  Score=47.51  Aligned_cols=35  Identities=26%  Similarity=0.662  Sum_probs=28.3

Q ss_pred             CCCCCC---CCCCC-ccccCC--CcceecCCCCCCCCCCCCCCccccc
Q psy951          136 PNPCSQ---SPCSH-LCLVIP--GGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~---~~C~~-~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      +++|..   ++|.| +|....  ++|.|.|++||       .|.+|+.
T Consensus         3 i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~Gy-------tG~~Ce~   43 (46)
T 1k36_A            3 ITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGY-------TGVRCEH   43 (46)
T ss_dssp             EECCCTTCCSSCSSEEEEEETTTTEEEEEECTTC-------SSTTSCC
T ss_pred             cccCCCCCCCCCCCCEeeccCCCCCEEEECCCCC-------ccCCCCc
Confidence            467876   78888 898754  68999999999       6788864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.03  E-value=0.2  Score=46.10  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             eeEEEcCCCCCEEEEEECCC--CeEEEEEcCCCCeEEEEeCCCCccceeeeeccccEEEEEeCCCCceeeeccCCC
Q psy951           34 TGLSVDAAMDHTLYWVDSKL--NTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGR  107 (428)
Q Consensus        34 ~glavD~~~~~~lYW~d~~~--~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g~  107 (428)
                      .||+++  .+ +||-+....  ++|.++++......--+... ......+|++.+++||..+|..+.++..+....
T Consensus        46 qGL~~~--~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           46 EGFFYR--NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEE--TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred             ceEEEE--CC-EEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence            899998  46 899998654  48999999755432222221 233446689999999999999999999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.02  E-value=0.24  Score=47.12  Aligned_cols=82  Identities=11%  Similarity=0.082  Sum_probs=60.9

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeC--CCCcEEEEEccC
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDS--YDRNIRRSFMLE  400 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~--~~~~I~~~~~~g  400 (428)
                      ...+.+++++|..++||.+...+.+|+.-.+..   ......+..-..|.+++++..++.||.+..  ....|.+-++..
T Consensus       157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            345778999999999999988888887777654   323333444457899999999999999886  667899988876


Q ss_pred             cceeEEE
Q psy951          401 AQKGQVQ  407 (428)
Q Consensus       401 ~~~~~l~  407 (428)
                      ......+
T Consensus       234 ~~~~~~~  240 (391)
T 1l0q_A          234 NKITARI  240 (391)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            5544444

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.00  E-value=0.00029  Score=46.56  Aligned_cols=35  Identities=20%  Similarity=0.416  Sum_probs=27.5

Q ss_pred             CCCCCC---CCCC--ccc--cCCCcceecCCCCCCCCCCCCCCcccccC
Q psy951          137 NPCSQS---PCSH--LCL--VIPGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       137 n~C~~~---~C~~--~C~--~~~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      ++|..+   +|.|  +|.  +..++|.|.|++||       .|..|+..
T Consensus         1 ~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~-------~G~~Ce~~   42 (45)
T 1a3p_A            1 PGXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGY-------SGDRCQTR   42 (45)
T ss_dssp             CCCTTCCSSCCSSSCEEEECTTTSSEEEECCTTE-------ETTTTCEE
T ss_pred             CCcccCCCCCCCCCCEEEeecCCCCEEEEcCCCC-------cCCcCCcc
Confidence            467666   8887  897  56689999999999       67888643

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=96.96  E-value=0.00052  Score=57.85  Aligned_cols=43  Identities=28%  Similarity=0.631  Sum_probs=29.6

Q ss_pred             cccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          173 IRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       173 ~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      ..|.+.+++. .    .+|.|+|+|++.. +.|.|.|++||+|..|+..
T Consensus        43 ~~c~dideC~-~----~pC~n~g~C~~~~-~~y~C~C~~G~~G~~C~~~   85 (146)
T 1x7a_L           43 KQYVDGDQCE-P----NPCLNGGLCKDDI-NSYECWCQVGFEGKNCELD   85 (146)
T ss_dssp             -------CCS-S----CSSCTTCEEEECS-SCEEEECCSSEESTTTCEE
T ss_pred             ccCCCcCcCC-C----CCCCCCCEeECCC-CCEEEecCCCCcCCcCCCC
Confidence            3566555432 2    2799999999987 5799999999999999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.95  E-value=0.0034  Score=58.41  Aligned_cols=104  Identities=12%  Similarity=0.013  Sum_probs=70.7

Q ss_pred             ceeeccccccceeEEeeccCCCEEEEE-------ecCCCeEEEeeeccccCCceEEEEe-----ccccceeeeeeccCCe
Q psy951          315 RFRDVISDERRIEALDIDPVDEIIYWV-------DSYDRNIRRSFMLEAQKGQVQAVIS-----DERRIEALDIDPVDEI  382 (428)
Q Consensus       315 ~~~~~i~~~~~~~~l~~d~~~~~lyWt-------d~~~~~I~ra~l~g~~~~~~~~i~~-----~~~~p~glavD~~~~~  382 (428)
                      +...+..++..|.++++| .++.|||+       +....+|++.....   .+...+..     ....|.++++|..+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~i~~~~~~g~   84 (314)
T 1pjx_A            9 LFTKVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKPEVNGYGGIPAGCQCDRDANQ   84 (314)
T ss_dssp             CCEEEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECCEETTEECCEEEEEECSSSSE
T ss_pred             hHhhhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCC---CcEEEEEecccCCCCCCCceEEEecCCCc
Confidence            344456788899999999 56789999       77778898887543   23333322     2367999999987689


Q ss_pred             EEEEeCCCCcEEEEEccCcceeEE-EecccCCCCCCCcccccc
Q psy951          383 IYWVDSYDRNIRRSFMLEAQKGQV-QAGASRHQNGVPASSQRN  424 (428)
Q Consensus       383 lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~~~~~~~p~~~~~~  424 (428)
                      ||+++.+. .|.+.+.+|+.+ .+ .......+...|.+++++
T Consensus        85 l~v~~~~~-~l~~~d~~g~~~-~~~~~~~~~~~~~~~~~i~~d  125 (314)
T 1pjx_A           85 LFVADMRL-GLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFD  125 (314)
T ss_dssp             EEEEETTT-EEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEEC
T ss_pred             EEEEECCC-CEEEEeCCCCEE-EEEeccCCCccccCCcCEEEC
Confidence            99999865 688888885432 22 221112344567777765

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.92  E-value=0.00039  Score=60.19  Aligned_cols=29  Identities=41%  Similarity=1.066  Sum_probs=24.6

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      +|.|||.|+.    .-+|.|+.||.|..|+...
T Consensus       154 ~C~ngG~Cv~----P~~C~C~~Gw~G~~C~~~~  182 (188)
T 2ygo_A          154 GCRNGGFCNE----RRICECPDGFHGPHCEGTK  182 (188)
T ss_dssp             CCCTTCEECT----TSCEECCTTCBTTTTCBC-
T ss_pred             CCCCCCEeCC----CCcccCcCCCCCCCCcCCc
Confidence            7999999985    3479999999999999854

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.91  E-value=0.00033  Score=72.11  Aligned_cols=33  Identities=30%  Similarity=0.748  Sum_probs=28.5

Q ss_pred             CCCCCCEEeeCCCCceEecCC-CCCccCccCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCR-QDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~-~gy~G~~Ce~~~  222 (428)
                      +|+|||+|.....+.|.|.|+ +||+|..||...
T Consensus         8 PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   41 (587)
T 3nt1_A            8 PCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPE   41 (587)
T ss_dssp             CCCTTCEEEEEETTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCEeeCCCCCCeEEecCCCCccCCCCCCch
Confidence            899999999644357999999 999999999853

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.86  E-value=0.0004  Score=71.32  Aligned_cols=33  Identities=24%  Similarity=0.692  Sum_probs=29.1

Q ss_pred             CCCCCCEEee-CCCCceEecCC-CCCccCccCCCCC
Q psy951          190 QCQNGGMCAE-SETGDLTCNCR-QDFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~-~~~g~~~C~C~-~gy~G~~Ce~~~~  223 (428)
                      +|+|||+|.. .. +.|.|.|+ +||+|..||....
T Consensus         9 PC~ngG~C~~~~~-~~y~C~C~~~G~~G~~Ce~~~~   43 (553)
T 1q4g_A            9 PCQHQGICVRFGL-DRYQCDCTRTGYSGPNCTIPEI   43 (553)
T ss_dssp             CCCTTCEEEEETT-TEEEEECTTSSEETTTTCEECH
T ss_pred             CCCCCCCcCCCCC-CceEeeCCCCCcCCCCCCCCch
Confidence            7999999998 55 67999999 9999999998553

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=96.71  E-value=0.00024  Score=60.98  Aligned_cols=57  Identities=23%  Similarity=0.427  Sum_probs=35.5

Q ss_pred             CcceecCCC--CCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCc
Q psy951          153 GGYQCACPE--NATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTF  217 (428)
Q Consensus       153 ~~~~C~C~~--g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~  217 (428)
                      ++|.|.|++  || ...+.  +..|.+++++.. .  +-+|.| ++|++.. |+|+|.|++||+|..
T Consensus        98 ~~y~C~C~~g~G~-~~~~~--~~~c~dideC~~-~--~~~C~~-g~C~n~~-gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A           98 SEYKILCPGGEGF-RPNPI--TVILEDIDECQE-L--PGLCQG-GKCINTF-GSFQCRCPTGYYLNE  156 (162)
T ss_dssp             HHHHHHCTTCTTE-EECTT--TCCEEECCHHHH-C--GGGGBT-SEEEECS-SCEEEECCTTCCBCT
T ss_pred             CCceeECCCCCCc-ccCCC--CCccCccccccC-C--CCCcCC-CEeEcCC-CCEEeeCCCCccCCC
Confidence            456666665  55 22211  245666554321 1  124766 6999987 689999999999753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.68  E-value=0.023  Score=53.82  Aligned_cols=94  Identities=19%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcC---C-C--CeEEEEeCCCCccceeeee
Q psy951           10 PRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHD---G-R--NRQTILSGSDKLQHPISLD   83 (428)
Q Consensus        10 ~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ld---G-~--~~~~i~~~~~~~~~p~~l~   83 (428)
                      .+|.+.+ +|+.+. + ......|+||++++..+ .|||++...+.|.+.+++   | .  +++++.........|.++.
T Consensus       161 ~~l~~~~-~g~~~~-~-~~~~~~~~~i~~s~dg~-~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~  236 (326)
T 2ghs_A          161 GSIYHVA-KGKVTK-L-FADISIPNSICFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV  236 (326)
T ss_dssp             EEEEEEE-TTEEEE-E-EEEESSEEEEEECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred             eEEEEEe-CCcEEE-e-eCCCcccCCeEEcCCCC-EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence            3688887 664332 2 23456899999998888 899999999999999986   4 2  2345543211245677777


Q ss_pred             cc-ccEEEEEeCCCCceeeeccCCC
Q psy951           84 VF-ENNIYWLARDTGSLYKQDKFGR  107 (428)
Q Consensus        84 ~~-~~~lYwtD~~~~~I~~~~~~g~  107 (428)
                      +. +++||.+++..+.|.+.+.+|.
T Consensus       237 ~d~~G~lwva~~~~~~v~~~d~~g~  261 (326)
T 2ghs_A          237 CDAEGHIWNARWGEGAVDRYDTDGN  261 (326)
T ss_dssp             ECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             ECCCCCEEEEEeCCCEEEEECCCCC
Confidence            65 5678888887788999988643

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.64  E-value=0.00077  Score=54.17  Aligned_cols=55  Identities=25%  Similarity=0.443  Sum_probs=37.3

Q ss_pred             CCCCCC--CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCC
Q psy951          136 PNPCSQ--SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESE  201 (428)
Q Consensus       136 ~n~C~~--~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~  201 (428)
                      .++|..  .+|++.|++..++|+|.|++|| .+...  ++.|.+..+        .+|.+++.|+...
T Consensus        54 ~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~-~~~~~--g~~C~~~~~--------~pC~~~~~~i~~~  110 (114)
T 1aut_L           54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGY-KLGDD--LLQCHPAVK--------FPCGRPWKRMEKK  110 (114)
T ss_dssp             SSSSSSGGGGCSSEEEECSSSEEEECCTTE-EECTT--SSCEEECSS--------SCTTCCC------
T ss_pred             CCcCcCCCCCCCCEeECCCCCEEeECCCCe-eECCC--CCccCcCcc--------cCCCCCCccCCCC
Confidence            357874  4799999999999999999999 44332  578876543        2688888887543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.60  E-value=0.015  Score=55.65  Aligned_cols=63  Identities=11%  Similarity=0.072  Sum_probs=49.6

Q ss_pred             ceeEEeeccCCCEEEEEecCCCeEEEeee-ccccCCceEEEEe--ccccceeeeeeccCCeEEEEeCCCCcE
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRNIRRSFM-LEAQKGQVQAVIS--DERRIEALDIDPVDEIIYWVDSYDRNI  393 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~I~ra~l-~g~~~~~~~~i~~--~~~~p~glavD~~~~~lYwtd~~~~~I  393 (428)
                      .|.++++|+. +.||-++...++|.+-.. +|    +...++.  .+..|.++++|.. ++||.++....++
T Consensus       249 ~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G----~~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~~~  314 (343)
T 2qe8_A          249 ICDGISIDKD-HNIYVGDLAHSAIGVITSADR----AYKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLHHS  314 (343)
T ss_dssp             SCSCEEECTT-CCEEEEEGGGTEEEEEETTTT----EEEEEEECGGGSCEEEEEECTT-SCEEEEECCGGGS
T ss_pred             CCceEEECCC-CCEEEEccCCCeEEEEECCCC----CEEEEEECCceecCCeeEECCC-CcEEEEeCccccc
Confidence            3558999985 789999999999999888 66    3455554  4889999999975 7899999866544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.58  E-value=0.0053  Score=59.40  Aligned_cols=124  Identities=12%  Similarity=0.084  Sum_probs=81.1

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEE------eCCCCCceeEEEcCC---CCCEEEEEECC-------CCeEEEEEcCCC
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLV------MTGVRHPTGLSVDAA---MDHTLYWVDSK-------LNTIESVRHDGR   64 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~------~~~~~~P~glavD~~---~~~~lYW~d~~-------~~~I~~~~ldG~   64 (428)
                      ||.++..  .+|.+.+.||...+++.      .....-|.||++++.   ++ +||.++..       ..+|.+..+++.
T Consensus        32 l~V~e~~--G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lYv~~~~~~~~g~~~~~v~r~~~~~~  108 (353)
T 2g8s_A           32 MLITLRG--GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-RIWLSYSEVGDDGKAGTAVGYGRLSDD  108 (353)
T ss_dssp             EEEEETT--TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-EEEEEEEEECSSSCEEEEEEEEEECTT
T ss_pred             EEEEeCC--ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCC-EEEEEEeCCCCCCCceeEEEEEEECCC
Confidence            4666653  47888877775432221      123446799999986   77 89999765       458999988764


Q ss_pred             -----CeEEEEeCC----CCccceeeeecc-ccEEEEEeCC-------------CCceeeeccCCC------------Cc
Q psy951           65 -----NRQTILSGS----DKLQHPISLDVF-ENNIYWLARD-------------TGSLYKQDKFGR------------GV  109 (428)
Q Consensus        65 -----~~~~i~~~~----~~~~~p~~l~~~-~~~lYwtD~~-------------~~~I~~~~~~g~------------~~  109 (428)
                           ..++++...    .....+-+|.+. +++||++.-.             .++|+|++.+|+            ..
T Consensus       109 ~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~  188 (353)
T 2g8s_A          109 LSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVR  188 (353)
T ss_dssp             SSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSC
T ss_pred             CCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCC
Confidence                 355666532    122345566654 6699999633             358999999875            13


Q ss_pred             eeeeccCCCCCccccccc
Q psy951          110 PVLISKDLVNPSGVKAYH  127 (428)
Q Consensus       110 ~~~~~~~~~~p~~I~v~~  127 (428)
                      .+++..++.+|.++++..
T Consensus       189 ~~i~a~G~rnp~gl~~d~  206 (353)
T 2g8s_A          189 AEIWSYGIRNPQGMAMNP  206 (353)
T ss_dssp             TTEEEECCSEEEEEEEET
T ss_pred             ccEEEEcCcCccceEEEC
Confidence            456666777788887654

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=96.53  E-value=0.00034  Score=49.91  Aligned_cols=36  Identities=25%  Similarity=0.648  Sum_probs=28.6

Q ss_pred             CCCCCCCCCC--cccc-----CCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          137 NPCSQSPCSH--LCLV-----IPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       137 n~C~~~~C~~--~C~~-----~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|.+++|.|  +|++     ..++|.|.|++||       .|..|+...
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf-------~G~~Ce~~i   49 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF-------TGARCTENV   49 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTE-------ESTTSCEEC
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCC-------cCCccCcCc
Confidence            5677778887  8986     5578999999999       678897443

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.51  E-value=0.001  Score=65.46  Aligned_cols=31  Identities=35%  Similarity=0.919  Sum_probs=0.0

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGI  224 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~  224 (428)
                      +|.|||+|....    .|.|++||.|..|+...+.
T Consensus       372 ~C~ngg~C~~~~----~C~C~~G~~G~~Ce~c~C~  402 (426)
T 3zyj_B          372 HCQNGGTCHNNV----RCLCPAAYTGILCEKLRCE  402 (426)
T ss_dssp             -----------------------------------
T ss_pred             cCCCCCCcCCCC----CCcCCCCCcCCCCcCCCCC
Confidence            578889997653    8999999999999876554

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.51  E-value=0.0012  Score=55.19  Aligned_cols=31  Identities=39%  Similarity=0.866  Sum_probs=28.1

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|.|+|+|++.. +.|.|.|++||+|..|+..
T Consensus        54 pC~n~g~C~~~~-g~y~C~C~~G~~G~~C~~~   84 (142)
T 2c4f_L           54 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETH   84 (142)
T ss_dssp             CCCTTCEEEEET-TEEEEECCTTEESTTSCEE
T ss_pred             CcCCCCEEeCCC-CCEEeeCCCCccCCccccC
Confidence            789999999887 6799999999999999873

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.50  E-value=0.00042  Score=61.26  Aligned_cols=43  Identities=30%  Similarity=0.714  Sum_probs=0.0

Q ss_pred             cccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          173 IRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       173 ~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      ..|.+.+++. .    .+|.|||+|++.. |.|.|.|++||+|..|+..
T Consensus        37 ~~c~dideC~-~----~pC~ngg~C~n~~-g~y~C~C~~Gf~G~~Ce~~   79 (195)
T 1nfu_B           37 NKYKDGDQCE-T----SPCQNQGKCKDGL-GEYTCTCLEGFEGKNCELF   79 (195)
T ss_dssp             -------------------------------------------------
T ss_pred             ccCCCCcccC-C----CCCCCCCEeECCC-CCeeEeCCCCceecccccc
Confidence            3466555432 2    2789999999887 5799999999999999874

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=96.50  E-value=0.00059  Score=50.40  Aligned_cols=30  Identities=23%  Similarity=0.651  Sum_probs=24.3

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~  220 (428)
                      .|.|| +|.... .+.+.|.|++||+|.+||.
T Consensus        47 yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~   77 (79)
T 1xdt_R           47 FCIHG-ECKYVKELRAPSCICHPGYHGERCHG   77 (79)
T ss_dssp             CCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             cCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence            68897 995433 2568999999999999985

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.47  E-value=0.00074  Score=57.67  Aligned_cols=32  Identities=38%  Similarity=0.857  Sum_probs=28.5

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      +|.++|+|.+.. +.|.|.|++||.|..||...
T Consensus       126 ~C~~~g~C~~~~-~~~~c~C~~g~~G~~Ce~~~  157 (162)
T 1g1s_A          126 SCSKQGECLETI-GNYTCSCYPGFYGPECEYVR  157 (162)
T ss_dssp             GGGGSEEEEECS-SSEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCEEecCC-CCceEeCCCCCcCcccccCc
Confidence            688999999987 56999999999999999864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=96.41  E-value=0.0011  Score=67.88  Aligned_cols=60  Identities=23%  Similarity=0.488  Sum_probs=13.2

Q ss_pred             cceecCCCCCCCCCCCCCCcccccCcc------CCCCCCCCCCCCCCCEEeeCC-CCceEecCCCCCccCccCC
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVE------RPRPLPRVCQCQNGGMCAESE-TGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~------~~~~~~~~c~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~  220 (428)
                      .+.|.|++||       .|..|+.-..      .....+.+|+|.++|.|...- ....+|.|++||+|..||.
T Consensus       459 tg~C~C~~g~-------~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          459 TGYCYCKRLV-------TGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             TCCBCBCTTC-------CSTTTCC--------------------------------------------------
T ss_pred             CCEEECCCCC-------cCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            4689999999       5777752100      001123467899998775432 1235799999999999974

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=96.36  E-value=0.00069  Score=58.55  Aligned_cols=49  Identities=22%  Similarity=0.663  Sum_probs=36.1

Q ss_pred             cceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .++|.|++||       .|..|+.    +...  + .|.|| +|+    +.++|.|++||+|..|+..
T Consensus        82 ~~~C~C~~G~-------~G~~C~~----C~~~--~-~C~~g-~C~----~~~~C~C~~G~~G~~C~~~  130 (169)
T 2vj2_A           82 PGDCRCQYGW-------QGLYCDK----CIPH--P-GCVHG-ICN----EPWQCLCETNWGGQLCDKD  130 (169)
T ss_dssp             TTCCEECTTE-------ESSSSCE----ECCC--T-TCSSE-ECS----STTCCEECTTEETTTTCEE
T ss_pred             CCeeECCCCC-------CCCCccc----CCCC--C-CCCCC-CcC----CCCEEeCCCCCCCCcccCC
Confidence            5899999999       5677753    1111  1 37675 887    4589999999999999854

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.25  E-value=0.65  Score=42.13  Aligned_cols=74  Identities=9%  Similarity=0.013  Sum_probs=54.6

Q ss_pred             CCCCceeEEEcCCCCCEEEEEECCC--CeEEEEEcCCCCeEEEEeCCCCccceeeeeccccEEEEEeCCCCceeeeccCC
Q psy951           29 GVRHPTGLSVDAAMDHTLYWVDSKL--NTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        29 ~~~~P~glavD~~~~~~lYW~d~~~--~~I~~~~ldG~~~~~i~~~~~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      ....-.||++|.  + +||-+....  +.|.++++.......-+.-. ......++++.+++||-.+|..+.++..+...
T Consensus        19 ~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           19 TTAFTEGLFYLR--G-HLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             TTCCEEEEEEET--T-EEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CccccccEEEEC--C-EEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            344567999985  6 899997654  59999999765443322321 24455788999999999999999999999764

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=96.24  E-value=0.0021  Score=48.28  Aligned_cols=29  Identities=28%  Similarity=0.928  Sum_probs=24.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc--cCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA--GTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~--G~~Ce~  220 (428)
                      +|.| |+|++.. |.|+|.|++||.  |..|+.
T Consensus        13 ~C~~-g~C~n~~-g~y~C~C~~Gy~~~g~~C~d   43 (82)
T 1emn_A           13 VCKH-GQCINTD-GSYRCECPFGYILAGNECVD   43 (82)
T ss_dssp             SCSS-SEECCCS-SCCCEECCTTEEEETTEEEE
T ss_pred             CcCC-CEEEecC-CCEEEECCCCeECCCCccCC
Confidence            5666 7999887 679999999997  888863

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.16  E-value=0.0019  Score=52.55  Aligned_cols=60  Identities=18%  Similarity=0.459  Sum_probs=42.4

Q ss_pred             CCCC--ccccCC--Ccc-eecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCc
Q psy951          143 PCSH--LCLVIP--GGY-QCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTF  217 (428)
Q Consensus       143 ~C~~--~C~~~~--~~~-~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~  217 (428)
                      +|+|  +|.+..  .++ .|.|++||       .|..|+.....        .|.++      .+..|.|.|..+++|..
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~-------~G~~Ce~~~~~--------~C~~g------~G~~YrG~~~~t~sG~~   60 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKF-------GGQHCEIDKSK--------TCYEG------NGHFYRGKASTDTMGRP   60 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTE-------ESTTSCEESSC--------CSBCS------SCTTCCSCCCBBTTSCB
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCC-------CCccccccCcC--------CCccc------ccccceeeccccccCCc
Confidence            4665  777763  556 99999999       67899764320        23332      23469999999999999


Q ss_pred             cCCCCC
Q psy951          218 CENYTG  223 (428)
Q Consensus       218 Ce~~~~  223 (428)
                      |+.=.+
T Consensus        61 Cq~W~s   66 (122)
T 2fd6_A           61 CLPWNS   66 (122)
T ss_dssp             BCCTTS
T ss_pred             ccCccC
Confidence            987433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.15  E-value=1  Score=43.36  Aligned_cols=76  Identities=13%  Similarity=0.087  Sum_probs=55.8

Q ss_pred             cccceeEEeeccCCCEEEEEecCCC--------------eEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEe
Q psy951          322 DERRIEALDIDPVDEIIYWVDSYDR--------------NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVD  387 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~~~--------------~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd  387 (428)
                      ....+.+++++|..++||-+.....              +|+.-.+..   .+....+..-..|.+++++..++.||.+.
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEAGNQPTGLDVSPDNRYLVISD  419 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEECSSSEEEEEECTTSCEEEEEE
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecCCCCCceEEEcCCCCEEEEEE
Confidence            3456789999999999998876543              666666543   32333344456799999999999999998


Q ss_pred             CCCCcEEEEEccC
Q psy951          388 SYDRNIRRSFMLE  400 (428)
Q Consensus       388 ~~~~~I~~~~~~g  400 (428)
                      .....|.+-++++
T Consensus       420 ~~d~~i~v~~~~~  432 (433)
T 3bws_A          420 FLDHQIRVYRRDG  432 (433)
T ss_dssp             TTTTEEEEEEETT
T ss_pred             CCCCeEEEEEecC
Confidence            8777888887764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.13  E-value=0.031  Score=53.85  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             CCeEEEEEcCCC--------CcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEc--CCCCe------------
Q psy951            9 SPRIESAWMDGS--------HRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRH--DGRNR------------   66 (428)
Q Consensus         9 ~~~I~~a~~DG~--------~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~l--dG~~~------------   66 (428)
                      ..+|.|.+.||+        .. .++..++..|.||++|+ .+ .||.+|.+.+.-+.+++  .|.+.            
T Consensus       173 ~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~RNp~Gla~dp-~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~  249 (347)
T 3das_A          173 GGKILRMTPDGEPAPGNPFPGS-PVYSYGHRNVQGLAWDD-KQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGS  249 (347)
T ss_dssp             TTCEEEECTTSSBCTTCSSTTC-CEEEBCCSBCCEEEECT-TC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCT
T ss_pred             CCEEEEEeCCCCccCCCCCCCC-eEEeeCCCCcceEEECC-CC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCc
Confidence            368999999998        44 35667999999999998 57 79999988754333333  44432            


Q ss_pred             ----EEEEeCCCCccceeeeeccccEEEEEeCCCCceeeeccCCCCc---eeeecc-CCCCCcccccccc
Q psy951           67 ----QTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGV---PVLISK-DLVNPSGVKAYHA  128 (428)
Q Consensus        67 ----~~i~~~~~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g~~~---~~~~~~-~~~~p~~I~v~~~  128 (428)
                          .++.-.. ....|.+++++++.+|-......+|++...++...   .+.+.. ....|.+|++..+
T Consensus       250 ~~~~P~~~~~~-~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD  318 (347)
T 3das_A          250 GFHDPVAQWST-DEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG  318 (347)
T ss_dssp             TCCCCSEEECT-TTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred             cccCCcEecCC-CCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence                0111110 12468899999999999999999999998875431   222333 3456667765443

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.12  E-value=0.00091  Score=55.44  Aligned_cols=31  Identities=42%  Similarity=1.032  Sum_probs=0.0

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|.|+|+|++.. +.|.|.|++||+|..|+..
T Consensus        49 pC~n~g~C~~~~-~~y~C~C~~G~~G~~C~~~   79 (134)
T 2vh0_B           49 PCQNQGKCKDGL-GEYTCTCLEGFEGKNCELF   79 (134)
T ss_dssp             --------------------------------
T ss_pred             CCCCcCCcccCC-CCEEeeCCCCccCCccccC
Confidence            689999999886 5799999999999999874

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=95.90  E-value=0.0031  Score=60.07  Aligned_cols=31  Identities=32%  Similarity=0.772  Sum_probs=27.5

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|.|+|+|.+.. +.|.|.|++||.|..|+..
T Consensus        12 pC~~~g~C~~~~-~~~~C~C~~g~~g~~C~~~   42 (317)
T 3h5c_B           12 PCLHNGSCQDSI-WGYTCTCSPGYEGSNCELA   42 (317)
T ss_dssp             CCTTTCCCCCCS-SSCCCCCSSSCCSSSSCCC
T ss_pred             CCCCCCEeECCC-CCeEEECCCCCcCCccccC
Confidence            689999999877 5799999999999999843

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=95.86  E-value=0.004  Score=58.32  Aligned_cols=41  Identities=24%  Similarity=0.587  Sum_probs=33.3

Q ss_pred             CCCCCC---CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          136 PNPCSQ---SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       136 ~n~C~~---~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      .|+|..   ++|+|.|.+..++|+|.|++|| .+..+  +.+|.+..
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~-~l~~d--~~sC~p~~   45 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQESYTCSCAQGY-RLGED--HKQCVPHD   45 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTE-EECTT--SSCEEECS
T ss_pred             CCccCCCCCCCCCCEeeCCCCCeEecCCCCc-ccCCC--CCcccccc
Confidence            488974   4899999999999999999999 67654  57888754

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=95.81  E-value=0.0046  Score=64.83  Aligned_cols=52  Identities=23%  Similarity=0.643  Sum_probs=38.4

Q ss_pred             eecCCCCCCCCCCCCCCcccccC--ccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCC
Q psy951          156 QCACPENATPKLPGVAEIRCSAA--VERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       156 ~C~C~~g~~~~~~~~~g~~C~~~--~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~  220 (428)
                      +|.|++||       .|..|+-.  ...|.. ...++|.++|+|..     ..|.|++||+|..|+.
T Consensus       539 ~C~C~~G~-------~G~~Cec~~~~~~C~~-~~g~~Cs~~G~C~~-----g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          539 KCRCHPGF-------EGSACQCERTTEGCLN-PRRVECSGRGRCRC-----NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             EEEECTTC-------CSTTSCSCCSSCTTBC-TTCSBTSSSCCBCS-----SCBCCSTTCCTTTTCC
T ss_pred             EEEcCCCC-------cCCCCccCCCCCCCCC-CCCCCCCCCCcCCC-----CEEECCCCCcCCCCCC
Confidence            79999999       67888722  122221 12347889999975     3599999999999997

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=95.80  E-value=0.0033  Score=48.26  Aligned_cols=36  Identities=28%  Similarity=0.694  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCC--ccccCC--CcceecCCCCCCCCCCCCCCccccc
Q psy951          135 APNPCSQSPCSH--LCLVIP--GGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      .+++|..++|.+  +|++..  ++|+|.|++||       .|..|+.
T Consensus        47 ~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~-------~G~~Ce~   86 (91)
T 1tpg_A           47 PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF-------AGKSCEI   86 (91)
T ss_dssp             CEEECSSCCSCTTCEEEEESSSSCEEEECCTTC-------BSSSCCB
T ss_pred             cCCcccCCCCCCCCEeecCCCCCCeEeECCCCC-------cCCcCCc
Confidence            457888889987  899887  89999999999       6788874

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=95.68  E-value=0.0031  Score=56.66  Aligned_cols=68  Identities=24%  Similarity=0.481  Sum_probs=42.5

Q ss_pred             CCCCC--ccccCCCcceecCCCCCCCCCC-CCCCcccccCccCCCCCCCCCCCCCC--CEEeeCCCCceEecCCCCCccC
Q psy951          142 SPCSH--LCLVIPGGYQCACPENATPKLP-GVAEIRCSAAVERPRPLPRVCQCQNG--GMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       142 ~~C~~--~C~~~~~~~~C~C~~g~~~~~~-~~~g~~C~~~~~~~~~~~~~c~C~ng--g~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      .+|++  .|+.    ..|.|++|| .... . .|..|+.....|... ...+|.++  |+|..   |  +|.|.+||+|.
T Consensus       143 ~~Csg~G~C~~----g~C~C~~gw-~~~~~~-~G~~Ce~~~~~C~~~-~g~~C~~~~~G~C~~---g--~C~C~~G~~G~  210 (217)
T 2p28_B          143 IICSGLGDCVC----GQCLCHTSD-VPGKLI-YGQYCECDTINCERY-NGQVCGGPGRGLCFC---G--KCRCHPGFEGS  210 (217)
T ss_dssp             CBGGGTEEEET----TEEEECCCC-STTCCE-ESTTSCEESSCSCEE-TTEETTCTTTEEEET---T--EEEECTTEEST
T ss_pred             CCCCCCCEEeC----CceECCCCC-CCcccE-ECCCcccCCccCCCC-CCCCCCCCCCcEEeC---C--eeECCCCCccC
Confidence            35654  5653    479999994 1000 0 578887433222211 11147777  99984   2  79999999999


Q ss_pred             ccCCC
Q psy951          217 FCENY  221 (428)
Q Consensus       217 ~Ce~~  221 (428)
                      .|+..
T Consensus       211 ~C~~~  215 (217)
T 2p28_B          211 ACQHH  215 (217)
T ss_dssp             TSCEE
T ss_pred             CcCCC
Confidence            99864

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.66  E-value=0.0037  Score=53.83  Aligned_cols=40  Identities=28%  Similarity=0.673  Sum_probs=31.4

Q ss_pred             CCCCCCCCC-----CCCccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          135 APNPCSQSP-----CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       135 ~~n~C~~~~-----C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      ..++|...+     |++.|.+.+++|.|.|++|| .+..+  +.+|.+
T Consensus       123 di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy-~l~~d--~~~C~~  167 (170)
T 1szb_A          123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGY-VLHRN--KRTCSE  167 (170)
T ss_dssp             ECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTE-EECTT--SSCEEE
T ss_pred             ccCcccCCCCCCCccCCccccCCCCEEEeCCCCc-EECCC--CCcccc
Confidence            468898643     99999999999999999999 55443  466754

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=95.60  E-value=0.0043  Score=65.03  Aligned_cols=54  Identities=24%  Similarity=0.524  Sum_probs=38.2

Q ss_pred             ceecCCCCCCCCCCCCCCcccccCcc---------CCCCCCCCCCCCCCCEEeeCCCCceEecCC------CCCccCccC
Q psy951          155 YQCACPENATPKLPGVAEIRCSAAVE---------RPRPLPRVCQCQNGGMCAESETGDLTCNCR------QDFAGTFCE  219 (428)
Q Consensus       155 ~~C~C~~g~~~~~~~~~g~~C~~~~~---------~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~------~gy~G~~Ce  219 (428)
                      ..|.|++||       .|..|+-...         .|......-.|.++|+|..   |  .|.|+      +||.|..||
T Consensus       446 g~C~C~~Gy-------~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~---G--~C~C~~~~~~~~G~~G~~Ce  513 (687)
T 3k6s_B          446 GICRCDTGY-------IGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC---G--QCLCHTSDVPGKLIYGQYCE  513 (687)
T ss_dssp             SSEEECSSE-------ESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET---T--EEEECCCCSTTCCEESTTSC
T ss_pred             CEeEcCCCC-------cCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC---C--EEEcCCCCCCCCCccccccc
Confidence            589999999       6788873221         1221111224999999983   3  79999      999999998


Q ss_pred             C
Q psy951          220 N  220 (428)
Q Consensus       220 ~  220 (428)
                      .
T Consensus       514 ~  514 (687)
T 3k6s_B          514 C  514 (687)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.52  E-value=0.03  Score=54.13  Aligned_cols=93  Identities=10%  Similarity=-0.003  Sum_probs=65.6

Q ss_pred             cccceeEEeeccCCCEEEEEec-----------------CCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEE
Q psy951          322 DERRIEALDIDPVDEIIYWVDS-----------------YDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIY  384 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~-----------------~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lY  384 (428)
                      -+..|-++++|+. +.+|-++.                 ...+++|..-     .+.+++.+++..|+|||++..++.||
T Consensus       163 ~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-----~~~~~~~~~l~~pNGia~spDg~~lY  236 (355)
T 3sre_A          163 LLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAEGFDFANGINISPDGKYVY  236 (355)
T ss_dssp             TCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-----TCCEEEEEEESSEEEEEECTTSSEEE
T ss_pred             CCCCCceEEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEEC-----CeEEEeecCCcccCcceECCCCCEEE
Confidence            4567888999985 55444432                 1237887643     24566778999999999999999999


Q ss_pred             EEeCCCCcEEEEEccC--cce-eEEEecccCCCCCCCccccccc
Q psy951          385 WVDSYDRNIRRSFMLE--AQK-GQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       385 wtd~~~~~I~~~~~~g--~~~-~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      ++|+...+|.+-++++  +.. +.++    .. ...|-+|++|-
T Consensus       237 vadt~~~~I~~~~~~~~g~l~~~~~~----~~-~g~PDGi~vD~  275 (355)
T 3sre_A          237 IAELLAHKIHVYEKHANWTLTPLRVL----SF-DTLVDNISVDP  275 (355)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEE----EC-SSEEEEEEECT
T ss_pred             EEeCCCCeEEEEEECCCCcEecCEEE----eC-CCCCceEEEeC
Confidence            9999999999999874  321 1122    11 36788888775

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.51  E-value=0.07  Score=53.40  Aligned_cols=102  Identities=18%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             ccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEE--e-------ccccceeeeeecc---CCeEEEE
Q psy951          319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--S-------DERRIEALDIDPV---DEIIYWV  386 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~--~-------~~~~p~glavD~~---~~~lYwt  386 (428)
                      +.+++.+|.+|+++|. +.||-++....+|+|...+.   +..+.+.  .       +..-+.|||+|..   ++.||++
T Consensus        22 ~a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           22 ILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPES---GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             EECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            4478999999999996 56999998877899887642   2233332  2       1334559999987   8999999


Q ss_pred             eCC------------CCcEEEEEccCc-----ceeEEEecccCCCCCCCcccccc
Q psy951          387 DSY------------DRNIRRSFMLEA-----QKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       387 d~~------------~~~I~~~~~~g~-----~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      ++.            ...|.+..+++.     ..++|+...-......+.+|+++
T Consensus        98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~  152 (454)
T 1cru_A           98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG  152 (454)
T ss_dssp             EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC
T ss_pred             EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC
Confidence            864            347888888753     34556543222233445666553

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=95.40  E-value=0.0046  Score=55.54  Aligned_cols=55  Identities=22%  Similarity=0.449  Sum_probs=38.5

Q ss_pred             ceecCCCCCCCCCCCCCCcccccCcc---------CCCCCCCCCCCCCCCEEeeCCCCceEecCCCC------CccCccC
Q psy951          155 YQCACPENATPKLPGVAEIRCSAAVE---------RPRPLPRVCQCQNGGMCAESETGDLTCNCRQD------FAGTFCE  219 (428)
Q Consensus       155 ~~C~C~~g~~~~~~~~~g~~C~~~~~---------~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~g------y~G~~Ce  219 (428)
                      ..|.|++||       .|..|+-...         .|.......+|.++|+|..     .+|.|++|      |+|..||
T Consensus       107 g~C~C~~G~-------~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~-----g~C~C~~gw~~~~~~~G~~Ce  174 (217)
T 2p28_B          107 GICRCDTGY-------IGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-----GQCLCHTSDVPGKLIYGQYCE  174 (217)
T ss_dssp             TEEEECTTE-------ESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET-----TEEEECCCCSTTCCEESTTSC
T ss_pred             CEEECCCCc-------cCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC-----CceECCCCCCCcccEECCCcc
Confidence            589999999       6777863321         1221112346889999983     26999999      7999998


Q ss_pred             CC
Q psy951          220 NY  221 (428)
Q Consensus       220 ~~  221 (428)
                      ..
T Consensus       175 ~~  176 (217)
T 2p28_B          175 CD  176 (217)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=95.35  E-value=0.012  Score=58.20  Aligned_cols=32  Identities=28%  Similarity=0.897  Sum_probs=28.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCC-CCccCccCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQ-DFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~-gy~G~~Ce~~~  222 (428)
                      +|.|||+|.... +.|.|.|+. ||.|..|+...
T Consensus       192 pC~n~g~C~~~~-~~~~C~C~~~~~~G~~C~~~~  224 (410)
T 3asi_A          192 SCSNQGVCLQQW-DGFSCDCSMTSFSGPLCNDPG  224 (410)
T ss_dssp             SSSTTCEEEECS-SSEEEECTTTSEESTTSCEEC
T ss_pred             cCCCCCEecCCC-CCceEeccCCcccCCCCCCCc
Confidence            799999999876 569999996 99999999754

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.32  E-value=0.0051  Score=46.66  Aligned_cols=29  Identities=38%  Similarity=1.021  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCCCccccCCCcceecCC--CCC
Q psy951          135 APNPCSQSPCSHLCLVIPGGYQCACP--ENA  163 (428)
Q Consensus       135 ~~n~C~~~~C~~~C~~~~~~~~C~C~--~g~  163 (428)
                      .+++|..++|++.|++.+++|+|.|+  .||
T Consensus        44 dideC~~~~C~~~C~n~~g~y~C~C~g~~G~   74 (87)
T 1z6c_A           44 DIDECSENMCAQLCVNYPGGYTCYCDGKKGF   74 (87)
T ss_dssp             CCCHHHHSCCSSEECCCSSSCCEECCSSSCC
T ss_pred             CcCeeCCCCCCCEEEccCCCEEEECCCCcCC
Confidence            67889888999999999999999996  555

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=95.31  E-value=0.016  Score=44.82  Aligned_cols=78  Identities=17%  Similarity=0.435  Sum_probs=51.2

Q ss_pred             CCCCCCCCCC--cccc-CCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCC
Q psy951          137 NPCSQSPCSH--LCLV-IPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDF  213 (428)
Q Consensus       137 n~C~~~~C~~--~C~~-~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy  213 (428)
                      +.|....|+.  .|.. .++..+|.|..|| ..    .|..|......|.....  -|.-...|.........|.|.++|
T Consensus        11 h~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY-~~----dg~~Cv~~Np~C~~nNG--GCd~nAeC~~~~~~ki~C~C~~~~   83 (105)
T 1n1i_A           11 HKCIDTNVPENAACYRYLDGTEEWRCLLGF-KE----VGGKCVPASITCEENNG--GCAPEAECTMDDKKEVECKCTKEG   83 (105)
T ss_dssp             TSCCSSCCCTTEEEEECTTSCEEEEECTTE-EE----CSSSEEECCCCTTSGGG--GSCTTSEEEECTTSCEEEECCSTT
T ss_pred             cEecCCCCCCCCCeEECCCCCEeEEEECCe-ec----cCCEEEECCcchhhcCC--CcCCCcEeEECCCCEEEeECCCCC
Confidence            4566556654  7777 5688899999999 22    35678776321221100  144445898886568999999985


Q ss_pred             c-----cCccCCC
Q psy951          214 A-----GTFCENY  221 (428)
Q Consensus       214 ~-----G~~Ce~~  221 (428)
                      +     |.+|...
T Consensus        84 ~~~~~~GvfC~~s   96 (105)
T 1n1i_A           84 SEPLFEGVFCSSS   96 (105)
T ss_dssp             CCEEGGGTEECCC
T ss_pred             CccccceEEECCC
Confidence            5     7788654

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=95.18  E-value=0.0036  Score=49.60  Aligned_cols=29  Identities=38%  Similarity=1.043  Sum_probs=0.6

Q ss_pred             CCCCCCC-CCCCCccccCCCcceecCCCCC
Q psy951          135 APNPCSQ-SPCSHLCLVIPGGYQCACPENA  163 (428)
Q Consensus       135 ~~n~C~~-~~C~~~C~~~~~~~~C~C~~g~  163 (428)
                      .+|+|.. ++|++.|++.+++|.|.|++||
T Consensus        68 dideC~~~~~C~~~C~n~~gsy~C~C~~Gy   97 (107)
T 2w2n_E           68 DIDECQDPDTCSQLCVNLEGGYKCQCEEGF   97 (107)
T ss_dssp             C-----------------------------
T ss_pred             cccccCCCCCcCCeeecCCCCEEEECCCCc
Confidence            6789985 6899999999999999999999

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.16  E-value=0.26  Score=46.86  Aligned_cols=106  Identities=14%  Similarity=0.145  Sum_probs=69.0

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCC-------CceeEEE---cCCCCCEEEE-EEC------------CCCeEE
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVR-------HPTGLSV---DAAMDHTLYW-VDS------------KLNTIE   57 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~-------~P~glav---D~~~~~~lYW-~d~------------~~~~I~   57 (428)
                      +|.+++... +|.+.+.+|.....+...++.       .|.||.+   |+. + +|+- ++.            +...+.
T Consensus        27 ~~vs~l~~g-~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-g-rL~vv~~~~~af~~~g~~~~g~~~v~  103 (334)
T 2p9w_A           27 FYQSNLYKG-RIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-K-RLFAVMKNAKSFNFADQSSHGASSFH  103 (334)
T ss_dssp             EEEEETTTT-EEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-C-EEEEEEEETTTTCTTSCCSSSCCEEE
T ss_pred             EEEEeccCC-EEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-C-cEEEEEcccccccccccccCCCCEEE
Confidence            355565554 899999986554444333332       5789999   676 6 8877 452            356799


Q ss_pred             EEEcC----CCCeEEEE-eCC--C-------Cccceeeeecc-ccEEEEEeCCC-CceeeeccCCCCc
Q psy951           58 SVRHD----GRNRQTIL-SGS--D-------KLQHPISLDVF-ENNIYWLARDT-GSLYKQDKFGRGV  109 (428)
Q Consensus        58 ~~~ld----G~~~~~i~-~~~--~-------~~~~p~~l~~~-~~~lYwtD~~~-~~I~~~~~~g~~~  109 (428)
                      +.+++    |+....+- +..  +       ....+-.+++. ++++|.+|... +.|++++.+|...
T Consensus       104 ~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A          104 SFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             EEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             EEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence            99999    43322221 110  0       11235566665 68999999888 9999999998743

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.12  E-value=0.0042  Score=47.01  Aligned_cols=33  Identities=30%  Similarity=0.881  Sum_probs=26.2

Q ss_pred             CCCCCCCCC--CCC-ccccCCCcceecCCCCCCCCCC
Q psy951          135 APNPCSQSP--CSH-LCLVIPGGYQCACPENATPKLP  168 (428)
Q Consensus       135 ~~n~C~~~~--C~~-~C~~~~~~~~C~C~~g~~~~~~  168 (428)
                      .+++|..++  |.+ .|++.+++|+|.|++|| .+.+
T Consensus        45 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~-~~~~   80 (86)
T 1lmj_A           45 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGH-QLSP   80 (86)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTS-CCCS
T ss_pred             CcccccCCCCcCCCCEeEcCCCCEEEECcCCc-ccCC
Confidence            467887654  764 99999999999999999 4443

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=95.10  E-value=0.0054  Score=52.19  Aligned_cols=38  Identities=26%  Similarity=0.634  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCcc
Q psy951          136 PNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      .++|...+|++  .|.+..++|+|.|++||       .|..|+..++
T Consensus       119 ~~~c~~~~C~~~g~C~~~~~~~~c~C~~g~-------~G~~Ce~~~~  158 (162)
T 1g1s_A          119 TASCQDMSCSKQGECLETIGNYTCSCYPGF-------YGPECEYVRD  158 (162)
T ss_dssp             ECCCCTTGGGGSEEEEECSSSEEEEECTTE-------ESTTSCEECC
T ss_pred             eCCCcCCCCCCCCEEecCCCCceEeCCCCC-------cCcccccCcc
Confidence            35788888987  89999999999999999       6788987764

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=95.01  E-value=0.0057  Score=51.65  Aligned_cols=31  Identities=35%  Similarity=0.894  Sum_probs=27.7

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|.++|.|.+.. +.|.|.|.+||+|..||..
T Consensus       126 pc~~~g~C~~~~-~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          126 SCSGHGECVETI-NNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             GGGGSEEEEEET-TEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCEeecCC-CCeeEECCCCccCcccccc
Confidence            688999999877 6799999999999999974

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=94.96  E-value=0.015  Score=49.75  Aligned_cols=32  Identities=34%  Similarity=0.843  Sum_probs=28.1

Q ss_pred             CCCCCCCEEeeCCC-CceEe-cCCCCCccCccCC
Q psy951          189 CQCQNGGMCAESET-GDLTC-NCRQDFAGTFCEN  220 (428)
Q Consensus       189 c~C~ngg~C~~~~~-g~~~C-~C~~gy~G~~Ce~  220 (428)
                      |+|.|+++|..... +.++| .|+++|+|.+||.
T Consensus         1 C~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~   34 (162)
T 1klo_A            1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL   34 (162)
T ss_dssp             CCSCTTCCEEECSSSCCEEECSCCTTEESTTSCE
T ss_pred             CcCcCcCcccccCCCCCEEeCCCCCCCcCCCCcC
Confidence            68999999988763 67999 7999999999996

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.92  E-value=0.31  Score=44.99  Aligned_cols=107  Identities=7%  Similarity=-0.058  Sum_probs=71.4

Q ss_pred             CEEEeeCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe-EEEEeCC--CCc
Q psy951            1 MFWAETGASPRIESAWMD-GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR-QTILSGS--DKL   76 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~D-G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~-~~i~~~~--~~~   76 (428)
                      ||+++|... ++...+.+ ++....+ .-+  .|.|..+.+..+ +||-++ +.++|..++...... +.+.-+.  ...
T Consensus        78 lyv~t~~~~-~v~viD~~t~~v~~~i-~~g--~~~g~glt~Dg~-~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           78 LYQVVWLKN-IGFIYDRRTLSNIKNF-THQ--MKDGWGLATDGK-ILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             EEEEETTCS-EEEEEETTTTEEEEEE-ECC--SSSCCEEEECSS-SEEEEC-SSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             EEEEEecCC-EEEEEECCCCcEEEEE-ECC--CCCeEEEEECCC-EEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccc
Confidence            588888665 78887776 3333333 222  466666666567 899998 689999999877543 2332221  123


Q ss_pred             cceeeeeccccEEEEEeCCCCceeeeccCCCCceeee
Q psy951           77 QHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLI  113 (428)
Q Consensus        77 ~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~~~  113 (428)
                      ..|..+.+.+++||-..|..+.|.+++...+.....+
T Consensus       152 ~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          152 IRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWI  188 (266)
T ss_dssp             CCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred             ccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence            3466777778899999999999999998755444333

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=94.89  E-value=0.0069  Score=41.34  Aligned_cols=31  Identities=26%  Similarity=0.622  Sum_probs=24.1

Q ss_pred             CCCCCC--ccc--cCCCcceecCCCCCCCCCCCCCCcccccC
Q psy951          141 QSPCSH--LCL--VIPGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       141 ~~~C~~--~C~--~~~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      +++|.|  +|.  +..++|.|.|++||       .|..|+..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~Gy-------tG~~Ce~~   45 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGY-------IGERCQYR   45 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTE-------ESTTSCEE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCC-------cCCCCCcC
Confidence            346776  787  55678999999999       67888753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=94.67  E-value=2.9  Score=39.15  Aligned_cols=77  Identities=10%  Similarity=0.030  Sum_probs=56.6

Q ss_pred             ccceeEEeeccCCCEEEEEecC-CCeEEEeeeccccCCceEEEE--eccccceeeeeeccCCeEEEEeCCCCcEEEEEcc
Q psy951          323 ERRIEALDIDPVDEIIYWVDSY-DRNIRRSFMLEAQKGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML  399 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~-~~~I~ra~l~g~~~~~~~~i~--~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~  399 (428)
                      ...+.+++++|..++||-++.. ..+|.--.++.. ++..+.+.  ..-..|.+++++..++.||.++...+.|.+-.+|
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            3457899999999999999988 676666566521 12233332  2235799999999999999999888889986666


Q ss_pred             C
Q psy951          400 E  400 (428)
Q Consensus       400 g  400 (428)
                      .
T Consensus       337 ~  337 (361)
T 3scy_A          337 Q  337 (361)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.50  E-value=0.016  Score=49.08  Aligned_cols=39  Identities=36%  Similarity=0.814  Sum_probs=30.4

Q ss_pred             CCCCCCC---CCCCCccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCSQ---SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~~---~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      ..++|..   .+|++.|.+.++++.|.|++|| .+..+  +++|.
T Consensus       116 d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy-~l~~~--~~~C~  157 (159)
T 1nzi_A          116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEY-FLHDD--MKNCG  157 (159)
T ss_dssp             ECCTTTC-CCCCSSSEEEEETTEEEEECCTTC-EECTT--SSCEE
T ss_pred             cCcccCCCCCCCCCCcccCcCCCEEEecCCCc-EECCC--CCccc
Confidence            4578875   3799999999999999999999 55443  45665

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=94.47  E-value=0.011  Score=50.61  Aligned_cols=64  Identities=31%  Similarity=0.762  Sum_probs=42.1

Q ss_pred             ccccCC--Cccee-cCCCCCCCCCCCCCCcccccCcc-----CCC-----CCCCCCCCCCC------CEEeeCCCCceEe
Q psy951          147 LCLVIP--GGYQC-ACPENATPKLPGVAEIRCSAAVE-----RPR-----PLPRVCQCQNG------GMCAESETGDLTC  207 (428)
Q Consensus       147 ~C~~~~--~~~~C-~C~~g~~~~~~~~~g~~C~~~~~-----~~~-----~~~~~c~C~ng------g~C~~~~~g~~~C  207 (428)
                      .|...+  +.++| .|++||       .|..|+.=..     ...     ....+|.|.++      +.|....   .+|
T Consensus         8 ~C~~~~~~g~~~C~~C~~g~-------~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~t---G~C   77 (162)
T 1klo_A            8 SCAIVPKTKEVVCTHCPTGT-------AGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLT---GEC   77 (162)
T ss_dssp             CEEECSSSCCEEECSCCTTE-------ESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTTT---CCB
T ss_pred             cccccCCCCCEEeCCCCCCC-------cCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCCC---Ccc
Confidence            676655  56899 799999       5677763110     000     01246788776      4675433   479


Q ss_pred             -cCCCCCccCccCC
Q psy951          208 -NCRQDFAGTFCEN  220 (428)
Q Consensus       208 -~C~~gy~G~~Ce~  220 (428)
                       .|.++|+|.+||.
T Consensus        78 ~~C~~g~~G~~Ce~   91 (162)
T 1klo_A           78 LKCIYNTAGFYCDR   91 (162)
T ss_dssp             CCBCTTEETTTTCE
T ss_pred             cCCCCCCcCCCcCc
Confidence             5999999999986

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=94.40  E-value=0.0092  Score=61.19  Aligned_cols=36  Identities=33%  Similarity=0.844  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCC--cccc-CCCcceecCC-CCCCCCCCCCCCcccccC
Q psy951          136 PNPCSQSPCSH--LCLV-IPGGYQCACP-ENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~-~~~~~~C~C~-~g~~~~~~~~~g~~C~~~  178 (428)
                      .++|.++||+|  .|.+ ..++|+|.|+ .||       .|..|+..
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~-------~G~~Ce~~   41 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGY-------SGPNCTIP   41 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSE-------ETTTTCEE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCc-------CCCCCCCC
Confidence            37899999999  9999 7899999999 999       67889753

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=94.31  E-value=0.019  Score=41.67  Aligned_cols=29  Identities=28%  Similarity=0.618  Sum_probs=23.1

Q ss_pred             CCCCCCC--CCCCC--ccccCCCcceec-CCCCC
Q psy951          135 APNPCSQ--SPCSH--LCLVIPGGYQCA-CPENA  163 (428)
Q Consensus       135 ~~n~C~~--~~C~~--~C~~~~~~~~C~-C~~g~  163 (428)
                      .+|+|..  ++|.+  .|++++++|+|. |..||
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~   35 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAV   35 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcc
Confidence            4688875  47975  899999999998 55677

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=94.24  E-value=0.85  Score=41.86  Aligned_cols=101  Identities=11%  Similarity=0.081  Sum_probs=66.8

Q ss_pred             cceeeeecCccceeecccccc---ceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe--c----cccceee
Q psy951          304 PEIRAYETHKRRFRDVISDER---RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS--D----ERRIEAL  374 (428)
Q Consensus       304 ~~~~~~~~~~~~~~~~i~~~~---~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~--~----~~~p~gl  374 (428)
                      ..+..++....+....+....   .|.+++++|..+++|.++....+|....+..   .+....+.  .    -..|.++
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~   87 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBTTEEEECTTCE
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC---CCeEeeEEcCCcccccccccce
Confidence            344444544444333333223   5899999999999999998888888877754   22222222  1    1278999


Q ss_pred             eeeccCCeEEEEeC-----------CCCcEEEEEccCcceeEEE
Q psy951          375 DIDPVDEIIYWVDS-----------YDRNIRRSFMLEAQKGQVQ  407 (428)
Q Consensus       375 avD~~~~~lYwtd~-----------~~~~I~~~~~~g~~~~~l~  407 (428)
                      +++..++.||.++.           ....|.+.++++......+
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  131 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF  131 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE
Confidence            99999999999963           2467999888765544443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=94.22  E-value=4  Score=39.00  Aligned_cols=81  Identities=12%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCC------------
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDR------------  391 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~------------  391 (428)
                      ..+.+++++|..+++|.+.....+|..-.++.   .+....+.....|.+++++..++.||.+.....            
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~  379 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV  379 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence            36778999999999999998888888877764   323333445567899999999999999987643            


Q ss_pred             --cEEEEEccCcceeEEE
Q psy951          392 --NIRRSFMLEAQKGQVQ  407 (428)
Q Consensus       392 --~I~~~~~~g~~~~~l~  407 (428)
                        .|.+.++........+
T Consensus       380 dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          380 LGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             CCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEEECCCCcEEEEe
Confidence              7888887655444444

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=93.93  E-value=0.017  Score=59.41  Aligned_cols=36  Identities=28%  Similarity=0.821  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCC--ccccC-CCcceecCC-CCCCCCCCCCCCcccccC
Q psy951          136 PNPCSQSPCSH--LCLVI-PGGYQCACP-ENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~-~~~~~C~C~-~g~~~~~~~~~g~~C~~~  178 (428)
                      +++|.++||+|  .|.+. .++|.|.|+ +||       .|..|+..
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~-------~G~~Ce~~   40 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGF-------YGENCTTP   40 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSE-------ETTTTCEE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCc-------cCCCCCCc
Confidence            47899999999  99964 489999999 999       68999864

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=93.92  E-value=0.0066  Score=56.33  Aligned_cols=41  Identities=29%  Similarity=0.622  Sum_probs=31.1

Q ss_pred             CCCCCC--CCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccCcc
Q psy951          135 APNPCS--QSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       135 ~~n~C~--~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      .+|+|.  .++|..  .|.+.+++|.|.|++|| .   + .|..|.+.+.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy-~---G-nG~~C~d~d~   48 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANY-T---G-NGRQCVAEGS   48 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTE-E---E-CSSSEEETTC
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCC-C---C-CCCcCCCCCC
Confidence            568897  458975  79999999999999999 2   3 4688988665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.83  E-value=0.58  Score=42.82  Aligned_cols=75  Identities=11%  Similarity=0.060  Sum_probs=56.8

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE-EeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcc
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV-ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ  402 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i-~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~  402 (428)
                      +++-||++||..+.||=..-...+|++..+.|.  . ...+ +.+..-++|||++- .+.+|.++.+...+.+..++...
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~--v-~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD--L-IRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCC--E-EEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC--E-EEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence            689999999999999986656789999998872  2 2223 35778999999993 34555678788888888776554

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=93.74  E-value=0.022  Score=58.22  Aligned_cols=34  Identities=21%  Similarity=0.597  Sum_probs=24.1

Q ss_pred             CCCCCCCCCEEeeCC---CCceEecCCCCCccCccCC
Q psy951          187 RVCQCQNGGMCAESE---TGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       187 ~~c~C~ngg~C~~~~---~g~~~C~C~~gy~G~~Ce~  220 (428)
                      .+|+|.++|+|.+..   ...+.|.|++||.|..|+.
T Consensus       439 ~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~  475 (525)
T 4aqs_A          439 KSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ  475 (525)
T ss_dssp             EECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC
T ss_pred             ccCCCCCCceecCCCcccCCCCEEECCCCCcCCCccc
Confidence            355777777665432   1235799999999999985

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=93.68  E-value=0.046  Score=61.74  Aligned_cols=33  Identities=27%  Similarity=0.869  Sum_probs=28.8

Q ss_pred             CCCCCCEEeeCCCCceEecCC-CCCccCccCCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCR-QDFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~-~gy~G~~Ce~~~~  223 (428)
                      +|.|||+|.... ..|.|.|+ +||+|..|+....
T Consensus      1024 pC~ngG~C~~~~-~~~~C~C~~~g~~G~~C~~~~~ 1057 (1245)
T 3qcw_A         1024 SCSNQGVCLQQW-DGFSCDCSMTSFSGPLCNDPGT 1057 (1245)
T ss_dssp             SSSSSCEEEEET-TEEEEECTTSSCBSTTSCBCCC
T ss_pred             cCCCCCEeCCCC-CCCEEECCCCCCCCCCccCCCc
Confidence            799999999887 46999999 6999999988653

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=93.60  E-value=0.015  Score=48.70  Aligned_cols=32  Identities=25%  Similarity=0.716  Sum_probs=26.7

Q ss_pred             CCCCCCCC--CCCC-ccccCCCcceecCCCCCCCCC
Q psy951          135 APNPCSQS--PCSH-LCLVIPGGYQCACPENATPKL  167 (428)
Q Consensus       135 ~~n~C~~~--~C~~-~C~~~~~~~~C~C~~g~~~~~  167 (428)
                      .+|+|..+  +|++ +|++.+++|+|.|++|| .+.
T Consensus       106 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy-~g~  140 (147)
T 2w86_A          106 DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGM-TLD  140 (147)
T ss_dssp             ECCHHHHSTTCSSSSEEEEETTEEEEECCTTC-CBC
T ss_pred             ccccccCCCCCCCCCEEECCCCCEEeeCCCCC-ccC
Confidence            57888754  5987 99999999999999999 443

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=93.45  E-value=0.044  Score=36.95  Aligned_cols=23  Identities=35%  Similarity=0.866  Sum_probs=19.3

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCcc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAG  215 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G  215 (428)
                      +|.  ++|++.. |+|.|.|++||.+
T Consensus        21 ~C~--~~C~n~~-Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           21 QCQ--HLCHNYV-GGYFCSCRPGYEL   43 (53)
T ss_dssp             TTS--SEEEEET-TEEEEECSTTCEE
T ss_pred             CCC--CEeECCC-CCeEEECCCCCeE
Confidence            454  5999988 6899999999984

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=93.18  E-value=0.068  Score=41.05  Aligned_cols=77  Identities=21%  Similarity=0.578  Sum_probs=47.6

Q ss_pred             CCCCCCCCCC--cccc-CCCcceecCCCCCCCCCCCCCCcccccCcc-CCCCCCCCCCCCCCCEEeeCCC----CceEec
Q psy951          137 NPCSQSPCSH--LCLV-IPGGYQCACPENATPKLPGVAEIRCSAAVE-RPRPLPRVCQCQNGGMCAESET----GDLTCN  208 (428)
Q Consensus       137 n~C~~~~C~~--~C~~-~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~-~~~~~~~~c~C~ngg~C~~~~~----g~~~C~  208 (428)
                      ..|....|..  .|.. .++..+|.|..|| ..    .+..|..... .|.....  -|.-...|.....    +...|.
T Consensus         5 h~C~~~~C~~NA~C~r~~~g~e~C~C~~gy-~g----dg~~Cv~~~~~sC~~nNG--GCd~nA~C~~~~~~~~~~ki~C~   77 (99)
T 1ob1_C            5 HQCVKKQCPQNSGCFRHLDEREECKCLLNY-KQ----EGDKCVENPNPTCNENNG--GCDADAKCTEEDSGSNGKKITCE   77 (99)
T ss_dssp             TCCCSCCCCTTEEEECCTTSCCEEEECTTE-EE----ETTEEEECSCCCSTTGGG--GCCTTEEEECCSCSSSSCCCEEE
T ss_pred             eEeccCCCCCCCCeEEcCCCCEEEEecCCe-ec----CCCeEeeCCCCChhhcCC--CcCCCceeEecCCcccCCceEeE
Confidence            3455555544  6665 3578899999999 32    3467876532 1111000  2444458987754    679999


Q ss_pred             CCCCCc-----cCccCC
Q psy951          209 CRQDFA-----GTFCEN  220 (428)
Q Consensus       209 C~~gy~-----G~~Ce~  220 (428)
                      |.+||+     |.+|..
T Consensus        78 C~~g~~~~~~~gvf~~~   94 (99)
T 1ob1_C           78 CTKPDSYPLFDGIFCSH   94 (99)
T ss_dssp             ECSTTCCEEGGGTEECC
T ss_pred             eCCCCcccceeEEEecc
Confidence            999966     666643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.08  E-value=1.9  Score=39.57  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=65.0

Q ss_pred             CCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe-EEEEeCCCCccceeeeec
Q psy951            7 GASPRIESAWMD-GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR-QTILSGSDKLQHPISLDV   84 (428)
Q Consensus         7 ~~~~~I~~a~~D-G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~-~~i~~~~~~~~~p~~l~~   84 (428)
                      |...+|.+.+++ |+-.+.+ ...-....||+++  .+ +||-++...+++...+.+.... ..+-..    ..+.+|+.
T Consensus        72 G~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----~eGwGLt~  143 (268)
T 3nok_A           72 GHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GE-RLYQLTWTEGLLFTWSGMPPQRERTTRYS----GEGWGLCY  143 (268)
T ss_dssp             TTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SS-CEEEEESSSCEEEEEETTTTEEEEEEECS----SCCCCEEE
T ss_pred             CCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CC-EEEEEEccCCEEEEEECCcCcEEEEEeCC----CceeEEec
Confidence            444467777765 6655555 4333455778887  46 8999999999999999875443 344332    35689998


Q ss_pred             cccEEEEEeCCCCceeeeccCC
Q psy951           85 FENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        85 ~~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      .+++||-+| ...+|...+..+
T Consensus       144 Dg~~L~vSd-Gs~~l~~iDp~T  164 (268)
T 3nok_A          144 WNGKLVRSD-GGTMLTFHEPDG  164 (268)
T ss_dssp             ETTEEEEEC-SSSEEEEECTTT
T ss_pred             CCCEEEEEC-CCCEEEEEcCCC
Confidence            899999998 477888888664

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=92.96  E-value=0.055  Score=45.17  Aligned_cols=60  Identities=18%  Similarity=0.412  Sum_probs=41.6

Q ss_pred             CCCC--ccccCC--Ccc-eecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCc
Q psy951          143 PCSH--LCLVIP--GGY-QCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTF  217 (428)
Q Consensus       143 ~C~~--~C~~~~--~~~-~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~  217 (428)
                      +|+|  .|+...  .++ .|.|++||       .|..|+....              ..|....+..|.+.+....+|..
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~-------~G~~Cei~~~--------------~~C~~g~G~~YrG~~s~T~sG~~   72 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKF-------GGQHCEIDKS--------------KTCYEGNGHFYRGKASTDTMGRP   72 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTE-------ESTTSCEESS--------------CCEECTTCTTCCSCCCBBTTSCB
T ss_pred             CCCCCCCcCCCccccCCccccCCCCC-------CCCceecccc--------------ccCCCCCccccccceecCCcCCc
Confidence            6776  786652  455 89999999       6788875432              13444444568888888889999


Q ss_pred             cCCCCC
Q psy951          218 CENYTG  223 (428)
Q Consensus       218 Ce~~~~  223 (428)
                      |+.=..
T Consensus        73 Cq~W~s   78 (145)
T 2i9a_A           73 CLPWNS   78 (145)
T ss_dssp             CCCTTS
T ss_pred             ccCCcc
Confidence            976443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=92.86  E-value=1.8  Score=39.87  Aligned_cols=96  Identities=7%  Similarity=-0.005  Sum_probs=67.1

Q ss_pred             CCcceeeeecCccceeecccccc--ceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe--c-----cccce
Q psy951          302 NGPEIRAYETHKRRFRDVISDER--RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS--D-----ERRIE  372 (428)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~--~-----~~~p~  372 (428)
                      ....+..++.........++...  .+.+++++|..+++|-+.....+|+.-.+..   .+....+.  .     ...|.
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~~~~~~~~~~~~~~~~~~~~~   95 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSVPGEVGRSMY   95 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCSTTEEEECSS
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC---CcEEEEEEccccccccccccc
Confidence            44556666665555444443333  6899999999999999988788888877754   22222222  1     23489


Q ss_pred             eeeeeccCCeEEEEeCC-----------CCcEEEEEccC
Q psy951          373 ALDIDPVDEIIYWVDSY-----------DRNIRRSFMLE  400 (428)
Q Consensus       373 glavD~~~~~lYwtd~~-----------~~~I~~~~~~g  400 (428)
                      +++++..++.||.+...           ...|.+.++..
T Consensus        96 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           96 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence            99999999999998854           46899988876

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=92.75  E-value=0.039  Score=51.15  Aligned_cols=30  Identities=23%  Similarity=0.707  Sum_probs=25.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc--cCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA--GTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~--G~~Ce~  220 (428)
                      +|..++.|++.. |+|.|.|++||.  |..|..
T Consensus        14 ~C~~~a~C~Nt~-Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A           14 QCSVHAECRDYA-TGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             GSCTTEEEEECS-SCEEEEECTTEEECSSSEEE
T ss_pred             CCCCCCEeEcCC-CCeEEEcCCCCCCCCCcCCC
Confidence            688889999988 689999999999  667864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=92.50  E-value=3.1  Score=37.63  Aligned_cols=89  Identities=10%  Similarity=-0.021  Sum_probs=64.0

Q ss_pred             CeEEEEEcC-CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe-EEEEeCCCCccceeeeecccc
Q psy951           10 PRIESAWMD-GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR-QTILSGSDKLQHPISLDVFEN   87 (428)
Q Consensus        10 ~~I~~a~~D-G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~-~~i~~~~~~~~~p~~l~~~~~   87 (428)
                      +.|.+.+++ |+-.+.+-...-..+.||+++  .+ +||-++...+++...+.+.... .++-..    ..+.+|+..++
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~-~ly~ltw~~~~v~v~D~~tl~~~~ti~~~----~~Gwglt~dg~  115 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RD-RLIQLTWRNHEGFVYDLATLTPRARFRYP----GEGWALTSDDS  115 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSSEEEEEETTTTEEEEEEECS----SCCCEEEECSS
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CC-EEEEEEeeCCEEEEEECCcCcEEEEEeCC----CCceEEeeCCC
Confidence            478888876 544444433333455778887  56 9999999999999999865443 444443    36789999999


Q ss_pred             EEEEEeCCCCceeeeccCC
Q psy951           88 NIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        88 ~lYwtD~~~~~I~~~~~~g  106 (428)
                      +||-+|- ..+|...+...
T Consensus       116 ~L~vSdg-s~~l~~iDp~t  133 (243)
T 3mbr_X          116 HLYMSDG-TAVIRKLDPDT  133 (243)
T ss_dssp             CEEEECS-SSEEEEECTTT
T ss_pred             EEEEECC-CCeEEEEeCCC
Confidence            9999994 67888888664

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=92.21  E-value=0.045  Score=40.29  Aligned_cols=35  Identities=26%  Similarity=0.637  Sum_probs=24.6

Q ss_pred             CCCCCC---CCCCCC-ccccCC--CcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCS---QSPCSH-LCLVIP--GGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~---~~~C~~-~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      ..++|.   ++.|.| .|.-..  +.+.|.|++||       +|.+|+
T Consensus        36 ~~~pC~~~~~~yClnG~C~~i~~~~~~~C~C~~GY-------tG~RCE   76 (79)
T 1xdt_R           36 KRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGY-------HGERCH   76 (79)
T ss_dssp             ---CTTTTTTTCCSSEEECCBGGGTBCCEEECTTE-------ESTTCC
T ss_pred             cCCCCCccccCcCCCCEeeeecCCCCeEEEcCCCc-------cccccc
Confidence            346777   567888 885333  67899999999       678885

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=91.78  E-value=0.034  Score=37.62  Aligned_cols=28  Identities=25%  Similarity=0.545  Sum_probs=21.1

Q ss_pred             CCCC--cccc----CCCcceecCCCCCCCCCCCCCCccccc
Q psy951          143 PCSH--LCLV----IPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       143 ~C~~--~C~~----~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      +|.|  +|+.    ..++|.|.|++||       .|.+|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf-------~G~~Ce~   48 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGF-------MGQRCEY   48 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTE-------ESTTSCE
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCC-------cCCCCcc
Confidence            5666  6775    2457999999999       6788864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=91.78  E-value=1.1  Score=42.55  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             CCcCCCCCCceeeeecCCcceeeeecC-ccceeecc--ccccceeEEeeccCCCEEE--EEe-------c-----CCCeE
Q psy951          286 PAFNNGASLGLTIVYSNGPEIRAYETH-KRRFRDVI--SDERRIEALDIDPVDEIIY--WVD-------S-----YDRNI  348 (428)
Q Consensus       286 p~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~i--~~~~~~~~l~~d~~~~~ly--Wtd-------~-----~~~~I  348 (428)
                      |.+.+.++.+..+|..+...+..++.. ......+.  +....|..++++|..++||  =++       .     ...++
T Consensus        42 ~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             CcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence            333333444444554333366666654 33222221  1113477899999888543  333       1     34444


Q ss_pred             EEeeeccccCCceE-EE--E--eccccceeeeeeccCCeEEEEeCCCCcEEEEEcc
Q psy951          349 RRSFMLEAQKGQVQ-AV--I--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML  399 (428)
Q Consensus       349 ~ra~l~g~~~~~~~-~i--~--~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~  399 (428)
                      .--.++..  ++.. .+  .  .....|.+++++..++.||.+|.+.+.|.+.+++
T Consensus       122 ~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          122 NVFSVSET--GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             EEEEECTT--CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEccCCC--CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence            44444321  1122 11  1  1346799999999999999999988899999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=91.43  E-value=1.2  Score=43.90  Aligned_cols=96  Identities=2%  Similarity=-0.158  Sum_probs=66.3

Q ss_pred             cceeeeecCccceeeccccccceeEEeeccCCCEEEEEecC---------CCeEEEeeeccccCCceEEEEec-------
Q psy951          304 PEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSY---------DRNIRRSFMLEAQKGQVQAVISD-------  367 (428)
Q Consensus       304 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~---------~~~I~ra~l~g~~~~~~~~i~~~-------  367 (428)
                      ..+..++.........++--..| +++++|..++||-++..         ...|......-  ......|.-.       
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t--~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT--FLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC--CcEEEEEECCCcccccc
Confidence            57777888877777777666778 99999999999999853         22344333322  1111112111       


Q ss_pred             cccceeeeeeccCCeEEEEeCC-CCcEEEEEccCcc
Q psy951          368 ERRIEALDIDPVDEIIYWVDSY-DRNIRRSFMLEAQ  402 (428)
Q Consensus       368 ~~~p~glavD~~~~~lYwtd~~-~~~I~~~~~~g~~  402 (428)
                      ...|.+++++..+++||.+... ...|.+.++...+
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence            2579999999999999999874 6678888876543

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=91.15  E-value=0.099  Score=35.68  Aligned_cols=26  Identities=23%  Similarity=0.776  Sum_probs=21.3

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENY  221 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~  221 (428)
                      +.|++.+ |+|+|.|++||.    |..|+..
T Consensus        13 ~~C~nt~-Gsy~C~C~~Gy~L~~d~~~C~di   42 (55)
T 2jkh_L           13 QFCHEEQ-NSVVCSCARGYTLADNGKACIPT   42 (55)
T ss_dssp             SEEEEET-TEEEEECCTTEEECTTSSCEEES
T ss_pred             cEeEcCC-CCeEEeCCCCCEECCCCCeeccC
Confidence            4899987 789999999997    5677653

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=90.84  E-value=0.21  Score=48.81  Aligned_cols=38  Identities=24%  Similarity=0.552  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCC-EEeeCC---------------CCceEec-CCCCCccCccCCCC
Q psy951          185 LPRVCQCQNGG-MCAESE---------------TGDLTCN-CRQDFAGTFCENYT  222 (428)
Q Consensus       185 ~~~~c~C~ngg-~C~~~~---------------~g~~~C~-C~~gy~G~~Ce~~~  222 (428)
                      .+.+|+|.+++ .|...+               .+.-.|. |.+++.|.+||.-.
T Consensus       321 ~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~  375 (403)
T 2y38_A          321 ECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCL  375 (403)
T ss_dssp             CCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEEC
T ss_pred             cccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCC
Confidence            34678897665 485321               2356995 99999999998643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=90.76  E-value=4.7  Score=38.65  Aligned_cols=92  Identities=18%  Similarity=0.120  Sum_probs=57.3

Q ss_pred             Ccee---EEEcCCCCCEEEEEEC---------CCCeEEEEEcCCCCe-EEEEeCCCCccceeeeecccc-EEEEEeCCCC
Q psy951           32 HPTG---LSVDAAMDHTLYWVDS---------KLNTIESVRHDGRNR-QTILSGSDKLQHPISLDVFEN-NIYWLARDTG   97 (428)
Q Consensus        32 ~P~g---lavD~~~~~~lYW~d~---------~~~~I~~~~ldG~~~-~~i~~~~~~~~~p~~l~~~~~-~lYwtD~~~~   97 (428)
                      .|.|   +++++..+ +||-+..         ..+.|..+++..... +.+.-+  ..+..+.++..+. .+|-+.+..+
T Consensus       265 ~p~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~  341 (373)
T 2mad_H          265 RPGGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             ecCceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCC
Confidence            4777   89998888 9998754         245799998876544 334322  2333344444566 5777666678


Q ss_pred             ceeeeccCCCCceeeeccCCCCCcccccc
Q psy951           98 SLYKQDKFGRGVPVLISKDLVNPSGVKAY  126 (428)
Q Consensus        98 ~I~~~~~~g~~~~~~~~~~~~~p~~I~v~  126 (428)
                      .|..++..+......+...-..|.+|..+
T Consensus       342 ~V~ViD~~t~~vv~~i~~vG~~P~~~~~~  370 (373)
T 2mad_H          342 VLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             eEEEEECCCCCEEeeecCCCCCCcEEEEc
Confidence            89999987544433322223457666654

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=90.70  E-value=0.15  Score=34.04  Aligned_cols=35  Identities=29%  Similarity=0.654  Sum_probs=25.7

Q ss_pred             CCCCCCC---CCCCC-cccc--CCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCSQ---SPCSH-LCLV--IPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~~---~~C~~-~C~~--~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      ..++|..   +.|.| .|.-  ..+.+.|.|+.||       .|.+|+
T Consensus         8 ~~~~C~~~~~~yC~nG~C~~i~~~~~~~C~C~~gy-------~G~RCe   48 (50)
T 2rnl_A            8 KKNPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEY-------FGERCG   48 (50)
T ss_dssp             CCCTTTTTGGGTCSSSEEEEETTTTEEEEECCSSC-------CSSSCC
T ss_pred             cCcccCchhhCcCCCCEEEEecCCCCeeEECCCCc-------cccccc
Confidence            4567764   46777 8873  3367899999999       678876

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=90.31  E-value=0.035  Score=38.51  Aligned_cols=29  Identities=24%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             CCCC--cccc----CCCcceecCCCCCCCCCCCCCCcccccC
Q psy951          143 PCSH--LCLV----IPGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       143 ~C~~--~C~~----~~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      +|.|  .|..    ...+|.|.|++||       .|.+|+..
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf-------~G~~Ce~~   49 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGF-------MGQRCEYK   49 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTE-------ESSSSCEE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCC-------ccCCCccc
Confidence            6776  7773    3357899999999       67888754

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=90.14  E-value=0.18  Score=56.92  Aligned_cols=31  Identities=32%  Similarity=0.892  Sum_probs=27.7

Q ss_pred             CCCCCCEEeeCCCCceEecCC-CCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCR-QDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~-~gy~G~~Ce~~  221 (428)
                      +|.|+|.|.... +.|.|.|+ .||.|..|+..
T Consensus       626 pC~ngg~C~~~~-~~~~C~C~~~g~~G~~C~~~  657 (1245)
T 3qcw_A          626 PCKNNGMCRDGW-NRYVCDCSGTGYLGRSCERE  657 (1245)
T ss_dssp             CCCTTCEEEECS-SSEEEECTTTTEESTTSCEE
T ss_pred             CCCCCCEEeCCC-CCeEEECCCCCcccccCccc
Confidence            799999999876 57999999 79999999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=90.07  E-value=5.6  Score=39.42  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             cceeeeecCccceeeccc---cccceeEEee--ccCCCEEEEEec-----CCCeEEEeeeccccCCceEEE-Eec-----
Q psy951          304 PEIRAYETHKRRFRDVIS---DERRIEALDI--DPVDEIIYWVDS-----YDRNIRRSFMLEAQKGQVQAV-ISD-----  367 (428)
Q Consensus       304 ~~~~~~~~~~~~~~~~i~---~~~~~~~l~~--d~~~~~lyWtd~-----~~~~I~ra~l~g~~~~~~~~i-~~~-----  367 (428)
                      ..+..++.......+.++   .-..|+.|.|  ||...++|-+..     .+.+|.....++..-...+++ +..     
T Consensus       228 d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~  307 (462)
T 2ece_A          228 NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG  307 (462)
T ss_dssp             CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCS
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccc
Confidence            444445555433333332   2245777655  999999999987     777787766654110111222 111     


Q ss_pred             ------------cccceeeeeeccCCeEEEEeCCCCcEEEEEcc
Q psy951          368 ------------ERRIEALDIDPVDEIIYWVDSYDRNIRRSFML  399 (428)
Q Consensus       368 ------------~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~  399 (428)
                                  -..|.+|+|...++.||.+..+.+.|.+-+.+
T Consensus       308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                        14589999999999999999999999998875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=90.04  E-value=14  Score=35.54  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             cceeEEeeccCCCEEEEEecC--CCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCC--CcEEEEEcc
Q psy951          324 RRIEALDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYD--RNIRRSFML  399 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~--~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~--~~I~~~~~~  399 (428)
                      ..+..+++.|..++|+.+...  ..+|+...+++   ++...+... ..+..+++...++.|+++....  ..|.+.+++
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CcccCeEECCCCCEEEEEECcCCceEEEEEECCC---CCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            356678999999999888654  34788877776   333333333 3788889988899898876543  379999999


Q ss_pred             CcceeEEE
Q psy951          400 EAQKGQVQ  407 (428)
Q Consensus       400 g~~~~~l~  407 (428)
                      |+..+.|.
T Consensus       387 g~~~~~l~  394 (415)
T 2hqs_A          387 GRFKARLP  394 (415)
T ss_dssp             SCCEEECC
T ss_pred             CCcEEEee
Confidence            88777664

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=90.03  E-value=0.13  Score=35.68  Aligned_cols=27  Identities=22%  Similarity=0.689  Sum_probs=21.5

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENY  221 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~  221 (428)
                      ..|++.++|+|.|.|++||.    |..|+..
T Consensus        11 ~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E           11 QFCKNSADNKVVCSCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             SEEEECSTTCEEEECCTTEEECTTSSCEEES
T ss_pred             CEeEeCCCCCEEeeCCCCcEECCCCCcccCC
Confidence            47998875689999999997    5678653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=89.94  E-value=4.6  Score=36.92  Aligned_cols=88  Identities=11%  Similarity=-0.049  Sum_probs=61.6

Q ss_pred             eEEEEEcC-CCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe-EEEEeCCCCccceeeeeccccE
Q psy951           11 RIESAWMD-GSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR-QTILSGSDKLQHPISLDVFENN   88 (428)
Q Consensus        11 ~I~~a~~D-G~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~-~~i~~~~~~~~~p~~l~~~~~~   88 (428)
                      .|.+.+++ |+-.+.+....-....||+++  .+ +||-++...+++...+.+.... ..+-.+    ..+.+++..+++
T Consensus        66 ~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~-~ly~ltw~~~~v~v~D~~t~~~~~ti~~~----~eG~glt~dg~~  138 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIELGKRYFGEGISDW--KD-KIVGLTWKNGLGFVWNIRNLRQVRSFNYD----GEGWGLTHNDQY  138 (262)
T ss_dssp             EEEEECTTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSSEEEEEETTTCCEEEEEECS----SCCCCEEECSSC
T ss_pred             eEEEEECCCCcEEEEEecCCccceeEEEEe--CC-EEEEEEeeCCEEEEEECccCcEEEEEECC----CCceEEecCCCE
Confidence            56666665 544444433233345778887  56 9999999999999999965443 444443    266889988999


Q ss_pred             EEEEeCCCCceeeeccCC
Q psy951           89 IYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        89 lYwtD~~~~~I~~~~~~g  106 (428)
                      ||-+|- ..+|+..|...
T Consensus       139 L~~SdG-s~~i~~iDp~T  155 (262)
T 3nol_A          139 LIMSDG-TPVLRFLDPES  155 (262)
T ss_dssp             EEECCS-SSEEEEECTTT
T ss_pred             EEEECC-CCeEEEEcCCC
Confidence            999984 67788887664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=89.82  E-value=2.3  Score=40.20  Aligned_cols=75  Identities=16%  Similarity=0.254  Sum_probs=58.1

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Ee---ccccceeeeeeccCCeEEEEeCCCCcEEEEE
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--IS---DERRIEALDIDPVDEIIYWVDSYDRNIRRSF  397 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~---~~~~p~glavD~~~~~lYwtd~~~~~I~~~~  397 (428)
                      ...+.+++++|..++||-+|.+..+|....++.  +++...+  +.   ....|.+++++..++.||.+......|.+.+
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECC--CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            457899999999999999998888888887762  1222222  22   1456999999999999999998777899888


Q ss_pred             cc
Q psy951          398 ML  399 (428)
Q Consensus       398 ~~  399 (428)
                      ++
T Consensus       222 ~~  223 (365)
T 1jof_A          222 ID  223 (365)
T ss_dssp             EC
T ss_pred             Ee
Confidence            76

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.50  E-value=3.9  Score=39.57  Aligned_cols=97  Identities=9%  Similarity=0.092  Sum_probs=66.8

Q ss_pred             cceeEEeeccC----CCEEEEEecCCCeEEEee---e-ccccCCceEEEEec--cccceeeeeeccCCeEEEEeCCCCcE
Q psy951          324 RRIEALDIDPV----DEIIYWVDSYDRNIRRSF---M-LEAQKGQVQAVISD--ERRIEALDIDPVDEIIYWVDSYDRNI  393 (428)
Q Consensus       324 ~~~~~l~~d~~----~~~lyWtd~~~~~I~ra~---l-~g~~~~~~~~i~~~--~~~p~glavD~~~~~lYwtd~~~~~I  393 (428)
                      ..+-+|++.|.    .+.|||.--.+.++++..   | +++.....+.+-..  .....++++|-.+++||+++.....|
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI  299 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQV  299 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEE
T ss_pred             cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeE
Confidence            36778999988    889999999998999886   3 22211223333232  24455789998889999999999999


Q ss_pred             EEEEccC-----cceeEEEecccCCCCCCCccccc
Q psy951          394 RRSFMLE-----AQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       394 ~~~~~~g-----~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      .+-+-++     ..-++|.++.   -+--|-++.+
T Consensus       300 ~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i  331 (381)
T 3q6k_A          300 SCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISV  331 (381)
T ss_dssp             EEEETTSCSBCGGGEEEEEECT---TCCSEEEEEE
T ss_pred             EEEeCCCCccccCceEEEEECC---CccccCeEEE
Confidence            9999887     3345555443   3334555544

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=89.38  E-value=0.17  Score=33.75  Aligned_cols=30  Identities=27%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             CCCCC-ccccCC--CcceecCCCCCCCCCCCCCCcccccC
Q psy951          142 SPCSH-LCLVIP--GGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       142 ~~C~~-~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      +.|.| .|.-..  +.+.|.|++||       .|.+|+..
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy-------~G~RCe~~   46 (50)
T 3e50_C           14 QFCFHGTCRFLVQEDKPACVCHSGY-------VGARCEHA   46 (50)
T ss_pred             CcccCCEEeeccCCCCeEEECCCCC-------cccCCCce
Confidence            35666 676433  67899999999       67888643

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=89.20  E-value=0.16  Score=36.64  Aligned_cols=18  Identities=22%  Similarity=0.558  Sum_probs=15.5

Q ss_pred             CCCCCCEEeeCCCCceEec
Q psy951          190 QCQNGGMCAESETGDLTCN  208 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~  208 (428)
                      +|.++++|++.. |+|.|.
T Consensus        12 ~C~~~~~C~Nt~-Gsy~C~   29 (71)
T 2kl7_A           12 ACKGEMKCINHY-GGYLCL   29 (71)
T ss_dssp             SCTTEEEEEETT-CCEEEE
T ss_pred             CCCCCCEeECCC-CCeEec
Confidence            577888999998 689999

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=89.11  E-value=0.18  Score=34.11  Aligned_cols=27  Identities=19%  Similarity=0.688  Sum_probs=21.4

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENY  221 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~  221 (428)
                      ..|++..+++|.|.|++||.    |..|+..
T Consensus        11 ~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~   41 (53)
T 2bz6_L           11 QYCSDHTGTKRSCRCHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CEeEcCCCCCEEeeCCCCCEECCCCCcccCC
Confidence            47988875479999999997    6678653

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=88.73  E-value=0.16  Score=49.95  Aligned_cols=36  Identities=25%  Similarity=0.729  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCC-CCCCCCCCCCCccccc
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPE-NATPKLPGVAEIRCSA  177 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~-g~~~~~~~~~g~~C~~  177 (428)
                      ..++|..++|++  .|.+...+|.|.|+. ||       .|..|+.
T Consensus       184 ~~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~-------~G~~C~~  222 (410)
T 3asi_A          184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSF-------SGPLCND  222 (410)
T ss_dssp             CSSCCCTTSSSTTCEEEECSSSEEEECTTTSE-------ESTTSCE
T ss_pred             CCCCcccccCCCCCEecCCCCCceEeccCCcc-------cCCCCCC
Confidence            347899999998  999999999999996 99       6788875

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=88.67  E-value=0.16  Score=34.06  Aligned_cols=26  Identities=19%  Similarity=0.724  Sum_probs=20.3

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENY  221 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~  221 (428)
                      +.|++.. |+|.|.|++||.    |..|+..
T Consensus        10 ~~C~n~~-gs~~C~C~~Gy~L~~d~~tC~di   39 (51)
T 1kig_L           10 QFCREER-SEVRCSCAHGYVLGDDSKSCVST   39 (51)
T ss_dssp             SCCCEET-TEECCCCCTTEEECTTSSCEEEC
T ss_pred             CEeEcCC-CCeEEeCCCCcEECCCCCccccC
Confidence            3587776 789999999997    6678653

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=88.47  E-value=0.22  Score=33.24  Aligned_cols=30  Identities=27%  Similarity=0.544  Sum_probs=21.2

Q ss_pred             CCCCC-ccc--cCCCcceecCCCCCCCCCCCCCCcccccC
Q psy951          142 SPCSH-LCL--VIPGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       142 ~~C~~-~C~--~~~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      +.|.| .|.  ...+.+.|.|++||       .|.+|+..
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy-------~G~RCe~~   46 (50)
T 1iox_A           14 HYCIKGRCRFVVAEQTPSCVCDEGY-------IGARCERV   46 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTE-------ETTTTCEE
T ss_pred             CcccCCEEEeEcCCCCeEEECCCCc-------ccCCCCee
Confidence            35555 664  33367899999999       67888753

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=88.08  E-value=0.2  Score=35.96  Aligned_cols=27  Identities=19%  Similarity=0.688  Sum_probs=21.3

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENY  221 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~  221 (428)
                      ..|.+..+++|.|.|++||.    |..|+..
T Consensus        17 h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~   47 (69)
T 1kli_L           17 QYCSDHTGTKRSCRCHEGYSLLADGVSCTPT   47 (69)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CEeEcCCCCCEEEeCCCCCeECCCCCcccCc
Confidence            47998885489999999997    6677653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=87.87  E-value=2.5  Score=40.42  Aligned_cols=78  Identities=10%  Similarity=-0.020  Sum_probs=56.9

Q ss_pred             cceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEE--Ee--ccc-cceeeeeeccC---CeEEEEeCCCCcEEE
Q psy951          324 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAV--IS--DER-RIEALDIDPVD---EIIYWVDSYDRNIRR  395 (428)
Q Consensus       324 ~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i--~~--~~~-~p~glavD~~~---~~lYwtd~~~~~I~~  395 (428)
                      .++.++++|+..++||-.+.. .-|.|...+.......+++  +.  .+. .|+||||+...   +.|+-++.+.++.-+
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V  258 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI  258 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence            479999999999999999976 4598888764311222333  22  344 89999997544   479999999988888


Q ss_pred             EEccCcc
Q psy951          396 SFMLEAQ  402 (428)
Q Consensus       396 ~~~~g~~  402 (428)
                      .+..++.
T Consensus       259 ydr~~~~  265 (355)
T 3amr_A          259 YDRQGKN  265 (355)
T ss_dssp             EESSTTC
T ss_pred             EECCCCC
Confidence            8886543

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=86.59  E-value=0.45  Score=40.41  Aligned_cols=27  Identities=26%  Similarity=0.870  Sum_probs=21.4

Q ss_pred             CCCCCEEeeCCCCceEecCCCCCc----cCccCC
Q psy951          191 CQNGGMCAESETGDLTCNCRQDFA----GTFCEN  220 (428)
Q Consensus       191 C~ngg~C~~~~~g~~~C~C~~gy~----G~~Ce~  220 (428)
                      |.+  .|.+.. |+|.|.|++||.    |..|+.
T Consensus       137 C~~--~C~n~~-g~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          137 CDH--HCHNHL-GGFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             SSS--EEEEET-TEEEEECCTTEEECTTSSCEEE
T ss_pred             cCC--ccccCC-CCEEEeCCCCcEECCCCCcccc
Confidence            554  799887 679999999998    566754

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=86.59  E-value=0.13  Score=50.51  Aligned_cols=34  Identities=26%  Similarity=0.728  Sum_probs=0.0

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCC
Q psy951          147 LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESE  201 (428)
Q Consensus       147 ~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~  201 (428)
                      .|.+..   +|.|++||       .|..|+           .|.|.++|+|....
T Consensus       378 ~C~~~~---~C~C~~G~-------~G~~Ce-----------~c~C~~~g~C~~~~  411 (426)
T 3zyj_B          378 TCHNNV---RCLCPAAY-------TGILCE-----------KLRCEEAGSCGSDS  411 (426)
T ss_dssp             -------------------------------------------------------
T ss_pred             CcCCCC---CCcCCCCC-------cCCCCc-----------CCCCCCCCcccCCC
Confidence            455443   89999999       566664           46899999998765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=86.53  E-value=4.5  Score=39.77  Aligned_cols=103  Identities=9%  Similarity=-0.056  Sum_probs=62.0

Q ss_pred             EEEeeCCC---CeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEEC---------CCCeEEEEEcCCCCe-EE
Q psy951            2 FWAETGAS---PRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDS---------KLNTIESVRHDGRNR-QT   68 (428)
Q Consensus         2 yWtd~~~~---~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~---------~~~~I~~~~ldG~~~-~~   68 (428)
                      |-++.+..   ..|...+.+-....--+..+ ..| ||++++..+ +||-++.         ..+.|..++...... ..
T Consensus        88 yV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~  164 (426)
T 3c75_H           88 YIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD  164 (426)
T ss_dssp             EEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             EEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence            55555321   24555554422211112223 379 999999988 9999986         356788887765433 33


Q ss_pred             EEeC-C-----CCccceeeeeccccEEEEEeCC-CCceeeeccCCC
Q psy951           69 ILSG-S-----DKLQHPISLDVFENNIYWLARD-TGSLYKQDKFGR  107 (428)
Q Consensus        69 i~~~-~-----~~~~~p~~l~~~~~~lYwtD~~-~~~I~~~~~~g~  107 (428)
                      |.-. .     +..++-+.++..+++||.+... .+.|..++....
T Consensus       165 I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          165 IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence            3221 1     0234445666678899999875 677888887643

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=86.33  E-value=0.16  Score=42.43  Aligned_cols=35  Identities=23%  Similarity=0.750  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          136 PNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      ..+|...+|++  .|.+....|.|.|.+||       .|..|+.
T Consensus       119 ~~~~~~~pc~~~g~C~~~~~~~~c~C~~g~-------~g~~Ce~  155 (157)
T 1g1t_A          119 TAACTNTSCSGHGECVETINNYTCKCDPGF-------SGLKCEQ  155 (157)
T ss_dssp             ECCCCTTGGGGSEEEEEETTEEEEEECTTE-------ESTTSCE
T ss_pred             cCCCCCCCCCCCCEeecCCCCeeEECCCCc-------cCccccc
Confidence            35677788887  99999999999999999       6677764

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=85.70  E-value=0.38  Score=46.57  Aligned_cols=62  Identities=23%  Similarity=0.522  Sum_probs=37.3

Q ss_pred             CcceecCCCCCCCCCCCCCCcccccCccC------------CCCCCCCCCCCCCC-EEeeC------CCCceEe-cCCCC
Q psy951          153 GGYQCACPENATPKLPGVAEIRCSAAVER------------PRPLPRVCQCQNGG-MCAES------ETGDLTC-NCRQD  212 (428)
Q Consensus       153 ~~~~C~C~~g~~~~~~~~~g~~C~~~~~~------------~~~~~~~c~C~ngg-~C~~~------~~g~~~C-~C~~g  212 (428)
                      +++.|.|..||       .|..|+.-...            ....+.+|.|..++ .|...      ..+.-+| .|.+|
T Consensus       270 ~~~~C~C~~nt-------~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n  342 (375)
T 4aqt_A          270 DKLMCNCKHNT-------YGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN  342 (375)
T ss_dssp             SCEEECCCTTE-------ESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTT
T ss_pred             CCeeeeCcCCC-------cCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCC
Confidence            56788898888       56666532211            01124567775544 45321      1123578 59999


Q ss_pred             CccCccCCC
Q psy951          213 FAGTFCENY  221 (428)
Q Consensus       213 y~G~~Ce~~  221 (428)
                      ++|..||.-
T Consensus       343 ~~G~~Ce~C  351 (375)
T 4aqt_A          343 TDGAKCERC  351 (375)
T ss_dssp             EESTTSCEE
T ss_pred             CcCCCCCCC
Confidence            999999863

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=85.64  E-value=0.6  Score=39.04  Aligned_cols=25  Identities=20%  Similarity=0.555  Sum_probs=20.4

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCEN  220 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~  220 (428)
                      +.|.+.. |.|.|.|++||.    |..|+.
T Consensus       130 ~~C~n~~-g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          130 HFCNNFI-GGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             SEEEEET-TEEEEECCTTCEECTTSSCEEC
T ss_pred             CcccCcC-CCEEEecCCCcEECCCCCcccc
Confidence            5798886 679999999999    566753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.40  E-value=15  Score=35.52  Aligned_cols=92  Identities=10%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             CEEEeeCCCCeEEEEEc----CCC---CcEEEEeCC-CCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCC-----CCeE
Q psy951            1 MFWAETGASPRIESAWM----DGS---HRRSLVMTG-VRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDG-----RNRQ   67 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~----DG~---~~~~l~~~~-~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG-----~~~~   67 (428)
                      |||.-.... ++.+...    |++   ..+.+-.++ .....++++|..++ .||+++...+.|.+-+.++     .+.+
T Consensus       238 LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~  315 (381)
T 3q6k_A          238 AYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTD  315 (381)
T ss_dssp             EEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEE
T ss_pred             EEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceE
Confidence            466665544 5666642    232   222222222 23445788987778 8999999999999999998     4668


Q ss_pred             EEEeCCCCccceeeeecc-ccEEEEEeCC
Q psy951           68 TILSGSDKLQHPISLDVF-ENNIYWLARD   95 (428)
Q Consensus        68 ~i~~~~~~~~~p~~l~~~-~~~lYwtD~~   95 (428)
                      +++... .+..|-++.+. +++||.+...
T Consensus       316 ~l~~d~-~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          316 VVYTSS-RFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             EEEECT-TCCSEEEEEECTTSCEEEEECS
T ss_pred             EEEECC-CccccCeEEECCCCeEEEEECc
Confidence            888776 78889888874 7789998644

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=85.15  E-value=8.9  Score=36.62  Aligned_cols=77  Identities=6%  Similarity=-0.033  Sum_probs=51.8

Q ss_pred             ccccceeEEee--ccCCC--EEEEEecCCCeEEEeee--ccccCCceEEEE--eccccceeeeeeccCCeEEEEeCCCCc
Q psy951          321 SDERRIEALDI--DPVDE--IIYWVDSYDRNIRRSFM--LEAQKGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRN  392 (428)
Q Consensus       321 ~~~~~~~~l~~--d~~~~--~lyWtd~~~~~I~ra~l--~g~~~~~~~~i~--~~~~~p~glavD~~~~~lYwtd~~~~~  392 (428)
                      ..+..|.||.+  ++.++  ++|=++.. .++..-.+  .+..+...+.+-  .--.+|+|+++|..++.||..+.... 
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G-  202 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA-  202 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce-
Confidence            34578889999  88777  57777655 55555444  221011222232  23458999999999999999999864 


Q ss_pred             EEEEEcc
Q psy951          393 IRRSFML  399 (428)
Q Consensus       393 I~~~~~~  399 (428)
                      |.+.+.+
T Consensus       203 Iw~~da~  209 (355)
T 3amr_A          203 IWKFSAE  209 (355)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            8888855

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=84.44  E-value=12  Score=37.87  Aligned_cols=96  Identities=7%  Similarity=-0.025  Sum_probs=66.7

Q ss_pred             CcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeec----
Q psy951          303 GPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDP----  378 (428)
Q Consensus       303 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~----  378 (428)
                      ...+..++....+-...++.-..+++++|+|..++||-++.. .+|..-.++.. +......+..-..|.+++++.    
T Consensus       158 d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~-t~~~~~~i~~g~~p~~va~sp~~~~  235 (543)
T 1nir_A          158 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAK-EPTKVAEIKIGIEARSVESSKFKGY  235 (543)
T ss_dssp             GTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSS-SCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCC-CCcEEEEEecCCCcceEEeCCCcCC
Confidence            345666666655544555433348999999999999999876 77877777421 122222233345799999998    


Q ss_pred             cCCeEEEEeCCCCcEEEEEccC
Q psy951          379 VDEIIYWVDSYDRNIRRSFMLE  400 (428)
Q Consensus       379 ~~~~lYwtd~~~~~I~~~~~~g  400 (428)
                      .++.||-+......|.+.+...
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTT
T ss_pred             CCCEEEEEEccCCeEEEEeccc
Confidence            8999999988777888876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=83.57  E-value=25  Score=31.77  Aligned_cols=73  Identities=10%  Similarity=-0.019  Sum_probs=51.4

Q ss_pred             cceeEEeecc-CCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcc
Q psy951          324 RRIEALDIDP-VDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ  402 (428)
Q Consensus       324 ~~~~~l~~d~-~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~  402 (428)
                      ..+.+++++| ..++||-+   ..+|..-.+..   .+....+..-..|.+++++..++.||.+.. ...|.+-+++...
T Consensus       255 ~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~v~v~d~~~~~  327 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ---RKLIKAANLDHTYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTLE  327 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE---ESEEEEEETTT---TEEEEEEECSSCCCEEEECSSSSCEEEESB-SSEEEEEETTTTE
T ss_pred             CcceeeEecCCCCCEEEEE---cCeEEEEECcc---CeEEEEEcCCCCccceEECCCCCEEEEecC-CCeEEEEeccccc
Confidence            4678899999 88888887   55777776654   323223333356899999999999998644 4689998886544


Q ss_pred             e
Q psy951          403 K  403 (428)
Q Consensus       403 ~  403 (428)
                      .
T Consensus       328 ~  328 (349)
T 1jmx_B          328 K  328 (349)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=83.50  E-value=11  Score=34.12  Aligned_cols=100  Identities=12%  Similarity=0.048  Sum_probs=67.3

Q ss_pred             EEeeCCCCeEEEEEcCCCCcEEEEe-CC----CCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcc
Q psy951            3 WAETGASPRIESAWMDGSHRRSLVM-TG----VRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ   77 (428)
Q Consensus         3 Wtd~~~~~~I~~a~~DG~~~~~l~~-~~----~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~   77 (428)
                      .++.+...+|...+.+|+....+-. ..    ...|.+++++.. + .++.++...++|...+.+|+....+-..    .
T Consensus        92 v~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G-~~lv~~~~~~~v~~~d~~G~~~w~~~~~----~  165 (276)
T 3no2_A           92 VAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK-G-NYLVPLFATSEVREIAPNGQLLNSVKLS----G  165 (276)
T ss_dssp             EEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT-S-CEEEEETTTTEEEEECTTSCEEEEEECS----S
T ss_pred             EEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC-C-CEEEEecCCCEEEEECCCCCEEEEEECC----C
Confidence            3444423367777788876544432 12    236778888864 4 4788999999999999998755554432    3


Q ss_pred             ceeeeec-cccEEEEEeCCCCceeeeccC-CCC
Q psy951           78 HPISLDV-FENNIYWLARDTGSLYKQDKF-GRG  108 (428)
Q Consensus        78 ~p~~l~~-~~~~lYwtD~~~~~I~~~~~~-g~~  108 (428)
                      .|+++.. .++.++.++..+++|...+.. |.-
T Consensus       166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             CCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            4555554 467888888888889888888 443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=83.22  E-value=40  Score=33.80  Aligned_cols=75  Identities=7%  Similarity=-0.032  Sum_probs=50.3

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccc---eeeee-eccCCeEEEEeC-CCCcEEEEE
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRI---EALDI-DPVDEIIYWVDS-YDRNIRRSF  397 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p---~glav-D~~~~~lYwtd~-~~~~I~~~~  397 (428)
                      ...+++++|||..+++|=+...+++|.-..+..   .+....+..-..|   .|.++ +...+.+|.+.. +.++|.+.+
T Consensus       323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEE
Confidence            456889999999999998888888777644432   3222223312223   25544 556688888876 668899999


Q ss_pred             ccC
Q psy951          398 MLE  400 (428)
Q Consensus       398 ~~g  400 (428)
                      .+.
T Consensus       400 ~~~  402 (543)
T 1nir_A          400 TDP  402 (543)
T ss_dssp             CCT
T ss_pred             eCC
Confidence            875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=83.04  E-value=12  Score=35.83  Aligned_cols=93  Identities=1%  Similarity=-0.178  Sum_probs=59.6

Q ss_pred             ceeeeecCccceeeccccccceeEEeeccCCCEEEEEecC---------CCeEEEeeeccccCCceEEEEec-------c
Q psy951          305 EIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSY---------DRNIRRSFMLEAQKGQVQAVISD-------E  368 (428)
Q Consensus       305 ~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~---------~~~I~ra~l~g~~~~~~~~i~~~-------~  368 (428)
                      .+..++.........++--..| +++++|..+++|-++..         +..|........  .....+-..       .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccC
Confidence            4455666555544445544567 99999999999999853         234544443220  111111111       2


Q ss_pred             ccceeeeeeccCCeEEEEeCC-CCcEEEEEccCc
Q psy951          369 RRIEALDIDPVDEIIYWVDSY-DRNIRRSFMLEA  401 (428)
Q Consensus       369 ~~p~glavD~~~~~lYwtd~~-~~~I~~~~~~g~  401 (428)
                      ..|.+++++..++.||.+... .+.|.+.+ ...
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~  157 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG  157 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence            469999999999999999865 57788877 443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.22  E-value=1.5  Score=28.26  Aligned_cols=11  Identities=18%  Similarity=0.151  Sum_probs=4.5

Q ss_pred             HHhhheeecCC
Q psy951          249 ATVYYVWRKRP  259 (428)
Q Consensus       249 ~~~~~~~r~~~  259 (428)
                      ++.+++.|+|+
T Consensus        28 ~~~~~~~RRRr   38 (44)
T 2l2t_A           28 LTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHhhhhh
Confidence            33344444443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=81.76  E-value=1.6  Score=28.18  Aligned_cols=11  Identities=18%  Similarity=0.211  Sum_probs=4.3

Q ss_pred             HHhhheeecCC
Q psy951          249 ATVYYVWRKRP  259 (428)
Q Consensus       249 ~~~~~~~r~~~  259 (428)
                      ++.+++.|+|+
T Consensus        29 ~~~~~~~RRr~   39 (44)
T 2ks1_B           29 LGIGLFMRRRH   39 (44)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHhhhhH
Confidence            33333444433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=81.73  E-value=12  Score=36.11  Aligned_cols=96  Identities=5%  Similarity=-0.095  Sum_probs=63.9

Q ss_pred             cceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCC---------CeEEEeeeccccCCceE-EE-Eec-----
Q psy951          304 PEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYD---------RNIRRSFMLEAQKGQVQ-AV-ISD-----  367 (428)
Q Consensus       304 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~---------~~I~ra~l~g~~~~~~~-~i-~~~-----  367 (428)
                      ..+..++.........++--..|. ++++|..+++|=++...         ..|.......   .... .+ +..     
T Consensus        59 ~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---~~v~~~I~v~~g~r~~  134 (386)
T 3sjl_D           59 TQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---LLPTADIELPDAPRFL  134 (386)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCCCCC
T ss_pred             CEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CeEEEEEECCCccccc
Confidence            356667777766666666666675 99999999999998532         2333333322   2111 12 111     


Q ss_pred             -cccceeeeeeccCCeEEEEeCC-CCcEEEEEccCcce
Q psy951          368 -ERRIEALDIDPVDEIIYWVDSY-DRNIRRSFMLEAQK  403 (428)
Q Consensus       368 -~~~p~glavD~~~~~lYwtd~~-~~~I~~~~~~g~~~  403 (428)
                       ...|.+++++..++.||.+... ...|.+.++.....
T Consensus       135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D          135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence             2379999999999999999874 67788888765543

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=80.48  E-value=0.86  Score=39.29  Aligned_cols=16  Identities=25%  Similarity=0.756  Sum_probs=13.5

Q ss_pred             ceecCCCCCCCCCCCCCCccccc
Q psy951          155 YQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       155 ~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      .+|.|++||       .|..|+.
T Consensus       165 ~~C~C~~Gw-------~G~~C~~  180 (188)
T 2ygo_A          165 RICECPDGF-------HGPHCEG  180 (188)
T ss_dssp             SCEECCTTC-------BTTTTCB
T ss_pred             CcccCcCCC-------CCCCCcC
Confidence            599999999       6788865

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=80.46  E-value=8.3  Score=39.54  Aligned_cols=95  Identities=9%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             Cceeeee--cCCcceeeeecCccceee--ccccccceeEEee-c-cCCCEEEEEecCCC---------------eEEEee
Q psy951          294 LGLTIVY--SNGPEIRAYETHKRRFRD--VISDERRIEALDI-D-PVDEIIYWVDSYDR---------------NIRRSF  352 (428)
Q Consensus       294 ~~~~~~~--s~~~~~~~~~~~~~~~~~--~i~~~~~~~~l~~-d-~~~~~lyWtd~~~~---------------~I~ra~  352 (428)
                      -|..+|.  .....+..+++...+-..  .+++...|+++++ . |..+++|=+.....               .=.-+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            3344555  334556777888766555  4567788999998 5 99999999852211               111223


Q ss_pred             ecccc-CCceEEEEeccccceeeeeeccCCeEEEEeCCC
Q psy951          353 MLEAQ-KGQVQAVISDERRIEALDIDPVDEIIYWVDSYD  390 (428)
Q Consensus       353 l~g~~-~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~  390 (428)
                      +|... +...++.+.+  +|+++++++.++.+|.|....
T Consensus       180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~s  216 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNS  216 (595)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCT
T ss_pred             EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCc
Confidence            44420 1112222223  899999999999999999765

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=80.41  E-value=8.6  Score=39.22  Aligned_cols=68  Identities=15%  Similarity=0.076  Sum_probs=49.1

Q ss_pred             ccccceeEEeeccCCCEEEEEecC---------------------CCeEEEeeecccc----CCceEEEE-e--------
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSY---------------------DRNIRRSFMLEAQ----KGQVQAVI-S--------  366 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~---------------------~~~I~ra~l~g~~----~~~~~~i~-~--------  366 (428)
                      ..+..|++++++|.++.||-+=..                     ...|+|-..++.+    +-.+.+++ .        
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            445579999999999999998321                     1379999887632    11345443 1        


Q ss_pred             -------------ccccceeeeeeccCCeEEE-EeCC
Q psy951          367 -------------DERRIEALDIDPVDEIIYW-VDSY  389 (428)
Q Consensus       367 -------------~~~~p~glavD~~~~~lYw-td~~  389 (428)
                                   .|..|++|++|.. ++||+ ||.+
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~  496 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGD  496 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCC
T ss_pred             ccccCccCccccCccCCCCceEECCC-CCEEEEeCCC
Confidence                         2689999999975 78999 9975

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=80.38  E-value=30  Score=35.10  Aligned_cols=96  Identities=10%  Similarity=-0.092  Sum_probs=60.3

Q ss_pred             EEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcC-CCC--eEEEEeCCCCccc
Q psy951            2 FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHD-GRN--RQTILSGSDKLQH   78 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ld-G~~--~~~i~~~~~~~~~   78 (428)
                      |.+..+.. .|...+.+......-+.. -..|.++++++..+ +||-++ ..+.|..+++. .+.  ...+..+    ..
T Consensus       170 ~V~~~~~~-~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr-~lyv~~-~dg~V~viD~~~~t~~~v~~i~~G----~~  241 (567)
T 1qks_A          170 SVTLRDAG-QIALIDGSTYEIKTVLDT-GYAVHISRLSASGR-YLFVIG-RDGKVNMIDLWMKEPTTVAEIKIG----SE  241 (567)
T ss_dssp             EEEETTTT-EEEEEETTTCCEEEEEEC-SSCEEEEEECTTSC-EEEEEE-TTSEEEEEETTSSSCCEEEEEECC----SE
T ss_pred             EEEeCCCC-eEEEEECCCCeEEEEEeC-CCCccceEECCCCC-EEEEEc-CCCeEEEEECCCCCCcEeEEEecC----CC
Confidence            33443333 566666553322222232 34799999999888 899887 46799999995 332  2333333    34


Q ss_pred             eeeeecc------ccEEEEEeCCCCceeeeccC
Q psy951           79 PISLDVF------ENNIYWLARDTGSLYKQDKF  105 (428)
Q Consensus        79 p~~l~~~------~~~lYwtD~~~~~I~~~~~~  105 (428)
                      |.++++.      +.++|-+....+.|...+..
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            6666654      56899998877877777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=80.37  E-value=12  Score=36.00  Aligned_cols=100  Identities=9%  Similarity=0.099  Sum_probs=68.2

Q ss_pred             cceeeeecCccceeeccccccceeEEeeccCCCEEEEEecC--CCeEEEeeeccccCCceEEEEeccccceeeeeeccCC
Q psy951          304 PEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDE  381 (428)
Q Consensus       304 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~--~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~  381 (428)
                      ..+..++........+......+..+++.|..++|+.+...  ..+|+...+++   .....+...-.....+++...++
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~---~~~~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING---GAPQRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCCEECCCSSSEEEEEEECTTSS
T ss_pred             ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC---CCEEEEecCCCcccCeEECCCCC
Confidence            44666666655544455555677889999999988877543  34888888876   33333333344566788888899


Q ss_pred             eEEEEeCC--CCcEEEEEccCcceeEE
Q psy951          382 IIYWVDSY--DRNIRRSFMLEAQKGQV  406 (428)
Q Consensus       382 ~lYwtd~~--~~~I~~~~~~g~~~~~l  406 (428)
                      .|+++...  ...|.+.++++...+.|
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~l  350 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQVL  350 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEEe
Confidence            99987753  45799999887766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	1e-25
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	3e-12
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-06
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	4e-23
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-08
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-08
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	8e-04
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	1e-06
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	7e-06
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	1e-05
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	3e-05
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	0.001
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	3e-05
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	4e-05
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	5e-05
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	6e-05
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	7e-05
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	0.002
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	8e-05
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.002
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	1e-04
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	1e-04
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	1e-04
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	1e-04
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	1e-04
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	2e-04
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	2e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.001
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	2e-04
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	2e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-04
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	3e-04
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	3e-04
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	4e-04
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	4e-04
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	5e-04
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	0.002
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	0.002
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.002
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	0.003
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	0.003
d2i9aa1	40	g.3.11.1 (A:10-49) Plasminogen activator (urokinas	0.004

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-25
 Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
           M+W + G   +I+   ++G    SLV   ++ P G+++D  +   LYWVDSKL++I S+ 
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 192

Query: 61  HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
            +G NR+TIL    +L HP SL VFE+ ++W      +++  ++       L++++L++P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252

Query: 121 SGVKAYHAQR 130
             +  +H   
Sbjct: 253 EDMVLFHNLT 262

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-12
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
           + ++N  E+R     +  +  +I + R + ALD +     IYW D   R I  + +  A 
Sbjct: 4   LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63

Query: 358 KGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 398
                  +   D +  + L +D +   IYW DS    +  +  
Sbjct: 64  GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 8/141 (5%)

Query: 12  IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
           +    +D S   SL+   +R+   L  + A  + +YW D     I S + D  +  +   
Sbjct: 12  VRKMTLDRSEYTSLI-PNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYD 69

Query: 72  G--SDKLQHPISLDV--FENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYH 127
              S  +Q P  L V    +NIYW     G++   D  G     L  ++   P  +    
Sbjct: 70  TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 129

Query: 128 AQR--YNTSAPNPCSQSPCSH 146
                Y T    P        
Sbjct: 130 VHGFMYWTDWGTPAKIKKGGL 150

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.7 bits (237), Expect = 4e-23
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 1   MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
           ++W +    +P+IE++ MDG++RR L    +  P GL+ DA     L WVD+  +  E +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF-SSQLCWVDAGTHRAECL 194

Query: 60  RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLV 118
                 R+ +L G   LQ+P ++  +  N+Y+    T S+   D    + +         
Sbjct: 195 NPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251

Query: 119 NPSGVKAYHAQ 129
              G+    +Q
Sbjct: 252 RLYGITIALSQ 262

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 298 IVYSNGPEIRAYETHKRRFRD------VISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 351
           ++++   +I      +   +       +    + I  L  D VD+++YW D  + +I R+
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63

Query: 352 FMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
            +          +  D    E + +D +   I+W DS    I  +
Sbjct: 64  SL--HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 17  MDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKL 76
           M  +  ++ +    +   GL+ D   D  +YW D    +I      G    TI+      
Sbjct: 22  MKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80

Query: 77  QHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAP 136
              I+LD     I+W       +      G    VL    LVNP G+      R N    
Sbjct: 81  PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI-VTDPVRGNLYWT 139

Query: 137 NPCSQSPC 144
           +    +P 
Sbjct: 140 DWNRDNPK 147

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 364 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 398
           +    + I  L  D VD+++YW D  + +I R+ +
Sbjct: 31  LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL 65

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
           N C  +   CSH+C  +  GY+C CP+
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPD 29

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 7e-06
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPE 161
              P     C H C    GG+ C+C  
Sbjct: 5   QVAPGEAPTCDHHCHNHLGGFYCSCRA 31

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 137 NPCSQS-PCSHLCLVIPGGYQCACPE 161
           + C     CS LC+ + GGY+C C E
Sbjct: 2   DECQDPDTCSQLCVNLEGGYKCQCEE 27

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
           CQN   C   + G+  C C   + G  CE  T
Sbjct: 9   CQNDATC-LDQIGEFQCICMPGYEGVHCEVNT 39

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
           N C  +PC +   CL   G +QC C     
Sbjct: 2   NECVSNPCQNDATCLDQIGEFQCICMPGYE 31

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQD-FAGTFCE 219
           CQN G C  +      C+C +  F G  C 
Sbjct: 9   CQNRGECMSTGFDQYKCDCTRTGFYGENCT 38

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 191 CQNGGMCAESETGD-LTCNCRQDFAGTFCEN 220
           C NGG+C   E+ D  TCNC   ++G  C+ 
Sbjct: 14  CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPE 161
             +     PC H C    GGY C+C  
Sbjct: 5   RTSLGDSVPCDHYCHNYLGGYYCSCRV 31

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 6e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
           CQN G C +   G+ TC C + F G  CE +T
Sbjct: 8   CQNQGKC-KDGLGEYTCTCLEGFEGKNCELFT 38

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 7e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
           C + G C   +  +  C C   F G  C+
Sbjct: 8   CLHNGRC-LDKINEFQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
           + C+ SPC H   CL     +QC CP   T
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFT 30

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.4 bits (87), Expect = 8e-05
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
           CQNGG C +       C C   F G  CE
Sbjct: 10  CQNGGSCKDQL-QSYICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
           + C+ SPC +   C      Y C C     
Sbjct: 3   DQCASSPCQNGGSCKDQLQSYICFCLPAFE 32

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 139 CSQSPCSHLCLVIPGGYQCACPE 161
               PCSH C    GGY C+CP 
Sbjct: 6   FVDVPCSHFCNNFIGGYFCSCPP 28

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
           C  G           +C C + + G  CE 
Sbjct: 16  CIKGRCRFVVAEQTPSCVCDEGYIGARCER 45

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQD-FAGTFCE 219
           CQ+ G+C         C+C +  ++G  C 
Sbjct: 10  CQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 4/18 (22%), Positives = 5/18 (27%)

Query: 144 CSHLCLVIPGGYQCACPE 161
           C   C        C+C  
Sbjct: 10  CDQFCHEEQNSVVCSCAR 27

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 191 CQNGGMCAESETGDL----TCNCRQDFAGTFCEN 220
           C NGG C   +         C C+  F G  C  
Sbjct: 14  CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 191 CQNGGMCAESETGD-LTCNCRQDFAGTFCE 219
           C + G+C   E  D   CNC   + G  C+
Sbjct: 12  CLHDGVCMYIEALDKYACNCVVGYIGERCQ 41

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 144 CSHLCLVIPGGYQCACPE 161
           C+H CL   G  +C+C  
Sbjct: 9   CTHYCLEEVGWRRCSCAP 26

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
           C NGG C +       C C   F G  CE
Sbjct: 11  CLNGGSCKDDI-NSYECWCPFGFEGKNCE 38

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
           + C  +PC +   C      Y+C CP    
Sbjct: 4   DQCESNPCLNGGSCKDDINSYECWCPFGFE 33

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 144 CSHLCLVIPGGYQCACPE 161
           C   C       +C+C  
Sbjct: 8   CDQFCREERSEVRCSCAH 25

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 191 CQNGGMCAES-ETGDLTCNCRQDFAGTFCEN 220
           C NGG C ++    D  C C + FAG  CE 
Sbjct: 6   CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
           C++ G C  +  G   C C Q + G  CE
Sbjct: 13  CEHAGKCINTL-GSFECQCLQGYTGPRCE 40

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
           C   G C      + TC C   F+G  CE 
Sbjct: 9   CSGHGEC-VETINNYTCKCDPGFSGLKCEQ 37

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 137 NPCSQ-SPCSHLCLVIPGGYQCACP 160
           + C     CS +C  +PG ++C C 
Sbjct: 3   DECENGGFCSGVCHNLPGTFECICG 27

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
           C +G      +     C C   + G  CE+  
Sbjct: 15  CFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 46

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
           C   G C     G+ TC+C   F G  CE
Sbjct: 9   CSKQGEC-LETIGNYTCSCYPGFYGPECE 36

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
           C +G      +     C C   + G  CE++ 
Sbjct: 14  CLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFF 45

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
           N C       S  C+  PG Y C CP 
Sbjct: 4   NECLDPTTCISGNCVNTPGSYICDCPP 30

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 1   MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
             +     + ++       +    L  TG+  P  ++VD+  D T+Y  D   + +  + 
Sbjct: 194 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS--DRTVYVADRGNDRVVKLT 251

Query: 61  HDGRNRQ 67
               +  
Sbjct: 252 SLEHHHH 258

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 132 NTSAPNPCSQSPCSHLCLVIPGGYQCACPE 161
            + +     Q  C HLC    GGY C+C  
Sbjct: 10  RSKSGEEDPQPQCQHLCHNYVGGYFCSCRP 39

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 11/36 (30%)

Query: 137 NPCSQSP-----CSHLCLVIP------GGYQCACPE 161
           N C ++      C +LCL  P        + CACP+
Sbjct: 2   NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 37

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 6/19 (31%), Positives = 6/19 (31%), Gaps = 1/19 (5%)

Query: 144 CSHLCLVIPGG-YQCACPE 161
           C   C    G    C C E
Sbjct: 9   CEQYCSDHTGTKRSCRCHE 27

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 189 CQCQNGGMCAESE--TGDLTCNCRQDFAGTFCE 219
           C C NGG C  ++  +    CNC + F G  CE
Sbjct: 2   CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.58
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.41
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.67
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.6
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.56
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.54
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	98.53
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.51
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.5
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.49
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.47
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.47
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.42
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.37
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.34
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.33
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.31
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.26
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.24
d1szba2	45	Mannose-binding protein associated serine protease	98.22
d1nt0a3	45	Mannose-binding protein associated serine protease	98.16
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.14
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.09
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.08
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.08
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.08
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.06
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.05
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.0
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.97
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	97.95
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	97.94
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.94
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.93
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.87
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.86
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.85
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.8
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	97.72
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.7
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.7
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.68
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.67
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.4
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.3
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.23
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.22
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.22
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	97.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.76
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	96.72
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	96.63
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	96.5
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	96.4
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	96.4
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	96.36
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	96.3
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.17
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.03
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1nt0a3	45	Mannose-binding protein associated serine protease	95.96
d1szba2	45	Mannose-binding protein associated serine protease	95.95
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	95.88
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.73
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	95.66
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	95.57
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	95.56
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	95.01
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	94.91
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	94.49
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	93.54
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	91.93
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	91.17
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	91.14
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	90.72
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	90.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.5
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	90.13
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	89.91
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.26
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	89.17
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	88.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.47
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	87.1
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	86.78
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	84.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	80.33

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.1e-27  Score=220.13  Aligned_cols=208  Identities=17%  Similarity=0.302  Sum_probs=171.1

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      |||+|.... +|.++.+||+.+++++..++..|.|||||+.++ .|||+|...++|+++++||+.+++++..  .+.+|.
T Consensus        50 iywsd~~~~-~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~p~  125 (263)
T d1npea_          50 VYWTDISEP-SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPR  125 (263)
T ss_dssp             EEEEETTTT-EEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEE
T ss_pred             EEEEECCCC-eEEEEEcccCCcEEEEEeccccccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecc--cccCCc
Confidence            699998776 899999999999999988899999999999999 9999999999999999999999998876  467777


Q ss_pred             eeec--cccEEEEEeCCC--CceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCCCCCCccccCCCcce
Q psy951           81 SLDV--FENNIYWLARDT--GSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQ  156 (428)
Q Consensus        81 ~l~~--~~~~lYwtD~~~--~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~~C~~~C~~~~~~~~  156 (428)
                      +|++  ..+.|||+++..  .+|++++++|++...++.                                          
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~------------------------------------------  163 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ------------------------------------------  163 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC------------------------------------------
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee------------------------------------------
Confidence            6665  689999999754  357777777543221100                                          


Q ss_pred             ecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHH
Q psy951          157 CACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLY  236 (428)
Q Consensus       157 C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~  236 (428)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (263)
T d1npea_         164 --------------------------------------------------------------------------------  163 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCccce
Q psy951          237 IPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRF  316 (428)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  316 (428)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (263)
T d1npea_         164 --------------------------------------------------------------------------------  163 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          317 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       317 ~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                          +++..|.||++|+.+++|||+|.++++|.++.++|   ...++++.++..|.|||||  +++|||||.+..+|.++
T Consensus       164 ----~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g---~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         164 ----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---PGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             ----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---EEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             ----ecccccceEEEeecCcEEEEEeCCCCEEEEEECCC---CCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence                11235679999999999999999999999999999   4577777889999999999  89999999999999999


Q ss_pred             EccCcceeEEEecccCCCCCCCcccccccc
Q psy951          397 FMLEAQKGQVQAGASRHQNGVPASSQRNLS  426 (428)
Q Consensus       397 ~~~g~~~~~l~~~~~~~~~~~p~~~~~~~~  426 (428)
                      +..+......+   ..+..+.|.+|++.-+
T Consensus       235 ~~~~g~~~~~~---~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         235 DLAISKEMDTF---HPHKQTRLYGITIALS  261 (263)
T ss_dssp             ETTTTEEEEEE---CCSSCCCCCCEEEECS
T ss_pred             ECCCCccceEE---CCCCCCCcceEEEeCC
Confidence            99866554443   2345567888887543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7e-26  Score=211.67  Aligned_cols=204  Identities=19%  Similarity=0.312  Sum_probs=162.5

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcE-----EEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCC
Q psy951            1 MFWAETGASPRIESAWMDGSHRR-----SLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDK   75 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~-----~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~   75 (428)
                      |+|+..+   +|.+..+||....     ..+......+.||++|+.++ +|||+|...+.|.+++++|+.+++++..  +
T Consensus         4 Ll~s~~~---~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~-~iywsd~~~~~I~~~~l~g~~~~~v~~~--~   77 (263)
T d1npea_           4 LLFAQTG---KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VVYWTDISEPSIGRASLHGGEPTTIIRQ--D   77 (263)
T ss_dssp             EEEEEEE---EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EEEEEETTTTEEEEEESSSCCCEEEECT--T
T ss_pred             EEEeCCC---eEEEEECCCccccccccccccccCCCcEEEEEEEeCCC-EEEEEECCCCeEEEEEcccCCcEEEEEe--c
Confidence            3555543   7999999998633     33333455688999999999 9999999999999999999999999977  4


Q ss_pred             ccceeeeec--cccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCCCCCCccccCCC
Q psy951           76 LQHPISLDV--FENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPG  153 (428)
Q Consensus        76 ~~~p~~l~~--~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~~C~~~C~~~~~  153 (428)
                      +..|.+|++  .+++|||+|...++|.+++++|....+++.                                       
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~---------------------------------------  118 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD---------------------------------------  118 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------------------------------------
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec---------------------------------------
Confidence            667776665  599999999988889888887543211000                                       


Q ss_pred             cceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhh
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRS  233 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~  233 (428)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (263)
T d1npea_         119 --------------------------------------------------------------------------------  118 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCc
Q psy951          234 LLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHK  313 (428)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~  313 (428)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (263)
T d1npea_         119 --------------------------------------------------------------------------------  118 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeccccccceeEEeeccCCCEEEEEecCCC--eEEEeeeccccCCceEEEEe-ccccceeeeeeccCCeEEEEeCCC
Q psy951          314 RRFRDVISDERRIEALDIDPVDEIIYWVDSYDR--NIRRSFMLEAQKGQVQAVIS-DERRIEALDIDPVDEIIYWVDSYD  390 (428)
Q Consensus       314 ~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~--~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~~~~~lYwtd~~~  390 (428)
                             .++..|.+|++||..++|||++.+..  +|+|+.|||.   ..++++. ++..|.|||||..+++|||+|.+.
T Consensus       119 -------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         119 -------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             -------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---CceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence                   01224678999999999999998764  7999999993   4556664 899999999999999999999999


Q ss_pred             CcEEEEEccCcceeEEEecccCCCCCCCcccccc
Q psy951          391 RNIRRSFMLEAQKGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       391 ~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      ++|++++++|..+++++.+     ...|.+||++
T Consensus       189 ~~I~~~~~~g~~~~~v~~~-----~~~P~~lav~  217 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEG-----LQYPFAVTSY  217 (263)
T ss_dssp             TEEEEEETTEEEEEEEEEC-----CCSEEEEEEE
T ss_pred             CEEEEEECCCCCeEEEECC-----CCCcEEEEEE
Confidence            9999999999999988742     3456778775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.4e-25  Score=206.57  Aligned_cols=200  Identities=20%  Similarity=0.372  Sum_probs=158.3

Q ss_pred             CEEEeeCCCCeEEEEEcCCCC----cEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCc
Q psy951            1 MFWAETGASPRIESAWMDGSH----RRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKL   76 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~----~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~   76 (428)
                      |||+|.... .|.++++||+.    .++++..++..|.|||||+.++ .|||+|...++|+++++||+.+++++..  .+
T Consensus        44 lYw~D~~~~-~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~--~~  119 (266)
T d1ijqa1          44 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRE--NG  119 (266)
T ss_dssp             EEEEETTTT-EEEEEEC--------CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEEC--TT
T ss_pred             EEEEECCCC-EEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcC--CC
Confidence            699998776 89999999854    5667777899999999999999 8999999999999999999999888887  47


Q ss_pred             cceeeeec--cccEEEEEeCCC-CceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCCCCCCccccCCC
Q psy951           77 QHPISLDV--FENNIYWLARDT-GSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPG  153 (428)
Q Consensus        77 ~~p~~l~~--~~~~lYwtD~~~-~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~~C~~~C~~~~~  153 (428)
                      .+|.+|++  ..++|||+|+.. .+|+|++++|++...++.                                       
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~---------------------------------------  160 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------------------------------------  160 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---------------------------------------
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc---------------------------------------
Confidence            77877765  488999999754 578888888754321110                                       


Q ss_pred             cceecCCCCCCCCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhh
Q psy951          154 GYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRS  233 (428)
Q Consensus       154 ~~~C~C~~g~~~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~  233 (428)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (266)
T d1ijqa1         161 --------------------------------------------------------------------------------  160 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCc
Q psy951          234 LLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHK  313 (428)
Q Consensus       234 ~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~  313 (428)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (266)
T d1ijqa1         161 --------------------------------------------------------------------------------  160 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe---ccccceeeeeeccCCeEEEEeCCC
Q psy951          314 RRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS---DERRIEALDIDPVDEIIYWVDSYD  390 (428)
Q Consensus       314 ~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~---~~~~p~glavD~~~~~lYwtd~~~  390 (428)
                             +++..|.||++|+.+++|||+|....+|.++.++|.   ..++++.   .+..|.|||+|  +++|||+|...
T Consensus       161 -------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~---~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~  228 (266)
T d1ijqa1         161 -------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN  228 (266)
T ss_dssp             -------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred             -------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCC---CEEEEEeCCCcccccEEEEEE--CCEEEEEECCC
Confidence                   012246689999999999999999999999999993   3455543   57789999999  79999999999


Q ss_pred             CcEEEEEccCcceeEEEecccCCCC
Q psy951          391 RNIRRSFMLEAQKGQVQAGASRHQN  415 (428)
Q Consensus       391 ~~I~~~~~~g~~~~~l~~~~~~~~~  415 (428)
                      ..|.+++..+....+++..++..|.
T Consensus       229 ~~I~~~~~~~g~~~~~~~~~~~~p~  253 (266)
T d1ijqa1         229 EAIFSANRLTGSDVNLLAENLLSPE  253 (266)
T ss_dssp             TEEEEEETTTCCCCEEEECSCSCCC
T ss_pred             CeEEEEECCCCcceEEEEcCCCCce
Confidence            9999998766666666655544433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.9e-25  Score=205.25  Aligned_cols=199  Identities=22%  Similarity=0.359  Sum_probs=160.3

Q ss_pred             eEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCC----eEEEEeCCCCccceeeeec--
Q psy951           11 RIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRN----RQTILSGSDKLQHPISLDV--   84 (428)
Q Consensus        11 ~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~----~~~i~~~~~~~~~p~~l~~--   84 (428)
                      .|.+.++||++...++. ++..|.+|++|+.++ +|||+|...+.|.++++||.+    +++++..  .+.+|.+|++  
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~-~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~--~~~~p~glAvD~   86 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQAPDGLAVDW   86 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEECS--SCSCCCEEEEET
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCC-EEEEEECCCCEEEEEEecCCCCCcceEEEEeC--CCCCcceEEEee
Confidence            59999999999888865 788999999999999 999999999999999999854    4566665  5777866665  


Q ss_pred             cccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCcccccccccccCCCCCCCCCCCCCCCccccCCCcceecCCCCCC
Q psy951           85 FENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENAT  164 (428)
Q Consensus        85 ~~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v~~~~~~~~~~~n~C~~~~C~~~C~~~~~~~~C~C~~g~~  164 (428)
                      .+++|||+|...++|.+++.+|.....++                                                   
T Consensus        87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~---------------------------------------------------  115 (266)
T d1ijqa1          87 IHSNIYWTDSVLGTVSVADTKGVKRKTLF---------------------------------------------------  115 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEE---------------------------------------------------
T ss_pred             ccceEEEEecCCCEEEeEecCCceEEEEE---------------------------------------------------
Confidence            59999999988888888877653321100                                                   


Q ss_pred             CCCCCCCCcccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCccCccCCCCCCCCCCCchhhHHHHHHHHHHH
Q psy951          165 PKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLL  244 (428)
Q Consensus       165 ~~~~~~~g~~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~~~~~~~~~~~~~~~~~i~~~~~  244 (428)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (266)
T d1ijqa1         116 --------------------------------------------------------------------------------  115 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhheeecCCCCCCCCCCCCCCceEeecCCeEEecCCCcCCCCCCceeeeecCCcceeeeecCccceeecccccc
Q psy951          245 ALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDER  324 (428)
Q Consensus       245 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~  324 (428)
                                                                                                 ..++.
T Consensus       116 ---------------------------------------------------------------------------~~~~~  120 (266)
T d1ijqa1         116 ---------------------------------------------------------------------------RENGS  120 (266)
T ss_dssp             ---------------------------------------------------------------------------ECTTC
T ss_pred             ---------------------------------------------------------------------------cCCCC
Confidence                                                                                       01122


Q ss_pred             ceeEEeeccCCCEEEEEecCCC-eEEEeeeccccCCceEEEEe-ccccceeeeeeccCCeEEEEeCCCCcEEEEEccCcc
Q psy951          325 RIEALDIDPVDEIIYWVDSYDR-NIRRSFMLEAQKGQVQAVIS-DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ  402 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~-~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~  402 (428)
                      +|.+|++||..++|||+|.+.. +|+|+.|||   +..+.++. ++..|.|||||..+++|||+|.....|+++++||+.
T Consensus       121 ~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG---s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CcceEEEEcccCeEEEeccCCCcceeEeccCC---CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            5779999999999999998875 999999999   34666665 899999999999999999999999999999999999


Q ss_pred             eeEEEecccCCCCCCCcccccc
Q psy951          403 KGQVQAGASRHQNGVPASSQRN  424 (428)
Q Consensus       403 ~~~l~~~~~~~~~~~p~~~~~~  424 (428)
                      +++++...  .....|.++|+.
T Consensus       198 ~~~~~~~~--~~~~~p~~lav~  217 (266)
T d1ijqa1         198 RKTILEDE--KRLAHPFSLAVF  217 (266)
T ss_dssp             CEEEEECT--TTTSSEEEEEEE
T ss_pred             EEEEEeCC--CcccccEEEEEE
Confidence            99888653  445678888875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=8.4e-14  Score=128.18  Aligned_cols=120  Identities=23%  Similarity=0.309  Sum_probs=83.8

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCcccee
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPI   80 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~   80 (428)
                      +|+++.+...+|.+...+++.+..+.......|.||++|.. + +|||+|.....|. +.-++..+.++...  .+..|.
T Consensus        27 i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g-~i~v~d~~~~~i~-~~~~~~~~~~~~~~--~~~~p~  101 (260)
T d1rwia_          27 VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-G-TVYVTDFNNRVVT-LAAGSNNQTVLPFD--GLNYPE  101 (260)
T ss_dssp             EEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT-C-CEEEEETTTEEEE-ECTTCSCCEECCCC--SCCSEE
T ss_pred             EEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCC-C-CEEEeeeeeceee-eeeeccceeeeeee--eeeecc
Confidence            47888877778999888888877766667889999999974 5 6999998766654 44455555443333  578899


Q ss_pred             eeecc-ccEEEEEeCCCCceeeeccCCCCceeeeccCCCCCccccc
Q psy951           81 SLDVF-ENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKA  125 (428)
Q Consensus        81 ~l~~~-~~~lYwtD~~~~~I~~~~~~g~~~~~~~~~~~~~p~~I~v  125 (428)
                      +|++. +++|||+|..+.++.+.+..+.........++..|.+|++
T Consensus       102 ~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  147 (260)
T d1rwia_         102 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  147 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE
T ss_pred             cccccccceeEeeccccccccccccccceeeeeeecccCCcceeee
Confidence            99875 5689999998888888887765544444445555655544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=5.7e-12  Score=115.63  Aligned_cols=96  Identities=7%  Similarity=0.079  Sum_probs=77.0

Q ss_pred             ccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEE-eccccceeeeeeccCCeEEEEeCCCCcEEEEEcc
Q psy951          321 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI-SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML  399 (428)
Q Consensus       321 ~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~-~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~  399 (428)
                      .++..|.+|++|+ ++.+|++|....+|.+...++   ....++. .++..|.||++|.. ++|||+|....+|.+.+.+
T Consensus       137 ~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~---~~~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         137 TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES---NNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTT---CCEEECCCSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTT
T ss_pred             cccCCcceeeecC-CCCEeeecccccccccccccc---ceeeeeeccccCCCccceeeee-eeeeeeecCCCEEEEEeCC
Confidence            3456788999998 566999999999999999887   3333333 48999999999985 6899999999999999988


Q ss_pred             CcceeEEEecccCCCCCCCccccccc
Q psy951          400 EAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       400 g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      |...+.+.    ..++..|.+||++-
T Consensus       212 ~~~~~~~~----~~~~~~P~~i~~d~  233 (260)
T d1rwia_         212 STTSTVLP----FTGLNTPLAVAVDS  233 (260)
T ss_dssp             CSCCEECC----CCSCCCEEEEEECT
T ss_pred             CCeEEEEc----cCCCCCeEEEEEeC
Confidence            88776654    34567788888864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=1.2e-08  Score=95.89  Aligned_cols=85  Identities=7%  Similarity=0.037  Sum_probs=65.4

Q ss_pred             cccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceE----EEE--eccccceeeeeeccCCeEEEEeCCCCcEEE
Q psy951          322 DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ----AVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRR  395 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~----~i~--~~~~~p~glavD~~~~~lYwtd~~~~~I~~  395 (428)
                      ++..|.||++++..+.||++|...++|+|..++........    +..  .+...|.||++|.. ++||+++.+...|.+
T Consensus       175 ~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~  253 (319)
T d2dg1a1         175 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLV  253 (319)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEE
T ss_pred             ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC-CCEEEEEcCCCEEEE
Confidence            34467799999999999999999999999998753111111    111  24567999999975 689999999999999


Q ss_pred             EEccCcceeEEE
Q psy951          396 SFMLEAQKGQVQ  407 (428)
Q Consensus       396 ~~~~g~~~~~l~  407 (428)
                      .+-+|+.-.++.
T Consensus       254 ~~p~G~~l~~i~  265 (319)
T d2dg1a1         254 FNKRGYPIGQIL  265 (319)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             ECCCCcEEEEEe
Confidence            999998665553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=8.4e-08  Score=87.99  Aligned_cols=96  Identities=6%  Similarity=-0.084  Sum_probs=71.3

Q ss_pred             cccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe--ccccceeeeeeccCCeEEEEeCC-CCcEEEEEc
Q psy951          322 DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS--DERRIEALDIDPVDEIIYWVDSY-DRNIRRSFM  398 (428)
Q Consensus       322 ~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~--~~~~p~glavD~~~~~lYwtd~~-~~~I~~~~~  398 (428)
                      .+..+.++++|+. +.||++|....+|++-..+|   .....+-.  .+..|.|||+|..+ +||.+|.. ..+|.+-+.
T Consensus       155 ~~~~~~~i~~d~~-g~i~v~d~~~~~V~~~d~~G---~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         155 HLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             TCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT
T ss_pred             cccccceeeeccc-eeEEeeeccccceeeeecCC---ceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECC
Confidence            4567889999964 68999999999999888877   22222322  57889999999975 69999985 446988899


Q ss_pred             cCcceeEEEecccCCCCCCCccccccc
Q psy951          399 LEAQKGQVQAGASRHQNGVPASSQRNL  425 (428)
Q Consensus       399 ~g~~~~~l~~~~~~~~~~~p~~~~~~~  425 (428)
                      +|+..+++-...   ....|.++|++-
T Consensus       230 ~G~~~~~~~~~~---~~~~p~~vav~~  253 (279)
T d1q7fa_         230 DGQLISALESKV---KHAQCFDVALMD  253 (279)
T ss_dssp             TSCEEEEEEESS---CCSCEEEEEEET
T ss_pred             CCCEEEEEeCCC---CCCCEeEEEEeC
Confidence            999877765322   234678887753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=3e-07  Score=85.90  Aligned_cols=78  Identities=14%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             ccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe-ccccceeeeeeccCCeEEEEeCCCCcEEEEEccCc
Q psy951          323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS-DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEA  401 (428)
Q Consensus       323 ~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~-~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~  401 (428)
                      ...|.+|++|.. +.||-+++...+|.|..-++   ......+. ....|.++|+...++.||.|++...+|.+.++.-.
T Consensus       225 ~~~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~---g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         225 EGGADGMDFDED-NNLLVANWGSSHIEVFGPDG---GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCEEEEEEEBTT-CCEEEEEETTTEEEEECTTC---BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             cccceeeEEecC-CcEEEEEcCCCEEEEEeCCC---CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            345889999964 67999999999999987776   33334343 56789999999888889999999999999998766


Q ss_pred             cee
Q psy951          402 QKG  404 (428)
Q Consensus       402 ~~~  404 (428)
                      -++
T Consensus       301 G~~  303 (314)
T d1pjxa_         301 GKK  303 (314)
T ss_dssp             BCC
T ss_pred             Chh
Confidence            544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=1.1e-06  Score=82.01  Aligned_cols=100  Identities=9%  Similarity=-0.021  Sum_probs=72.1

Q ss_pred             ccccccceeEEeeccCCC----EEEEEecCCCeEEEeeeccccC-CceEEEEe----ccccceeeeeeccCCeEEEEeCC
Q psy951          319 VISDERRIEALDIDPVDE----IIYWVDSYDRNIRRSFMLEAQK-GQVQAVIS----DERRIEALDIDPVDEIIYWVDSY  389 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~----~lyWtd~~~~~I~ra~l~g~~~-~~~~~i~~----~~~~p~glavD~~~~~lYwtd~~  389 (428)
                      +..++..|-+|++++..+    +||++|...++|+|..+++... ...++...    ....|.|||+|.. ++||.++.+
T Consensus       167 ~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~-GnlyVa~~~  245 (314)
T d1pjxa_         167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWG  245 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEET
T ss_pred             eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC-CcEEEEEcC
Confidence            345566788999977654    8999999999999988765211 11223322    3557999999965 689999999


Q ss_pred             CCcEEEEEccCcceeEEEecccCCCCCCCccccc
Q psy951          390 DRNIRRSFMLEAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       390 ~~~I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      ...|.+.+.+|......+    .-|...|.++|.
T Consensus       246 ~g~I~~~dp~~g~~~~~i----~~p~~~~t~~af  275 (314)
T d1pjxa_         246 SSHIEVFGPDGGQPKMRI----RCPFEKPSNLHF  275 (314)
T ss_dssp             TTEEEEECTTCBSCSEEE----ECSSSCEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEE----ECCCCCEEEEEE
Confidence            999999999977665555    345566766665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=2.4e-06  Score=77.88  Aligned_cols=101  Identities=18%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             EEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCCCCccceeee
Q psy951            3 WAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISL   82 (428)
Q Consensus         3 Wtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~~~~~~p~~l   82 (428)
                      |+..+...+|.+.+.+|.....+-...+..|.++++|.. + ++|.++....++...+.+|+-...+-... .+..|.++
T Consensus        86 ~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~-G-~i~v~~~~~~~~~~~~~~g~~~~~~g~~~-~~~~~~~i  162 (279)
T d1q7fa_          86 VTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-G-RIIVVECKVMRVIIFDQNGNVLHKFGCSK-HLEFPNGV  162 (279)
T ss_dssp             EEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-S-CEEEEETTTTEEEEECTTSCEEEEEECTT-TCSSEEEE
T ss_pred             eeccCCccccccccccccceeecCCCcccccceeccccC-C-cEEEEeeccceeeEeccCCceeecccccc-ccccccee
Confidence            444444458889999998877765567889999999954 5 69999999999999999998766664443 67788888


Q ss_pred             ecc-ccEEEEEeCCCCceeeeccCC
Q psy951           83 DVF-ENNIYWLARDTGSLYKQDKFG  106 (428)
Q Consensus        83 ~~~-~~~lYwtD~~~~~I~~~~~~g  106 (428)
                      ++. ++.||++|+..+.|...+.+|
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G  187 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEG  187 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTC
T ss_pred             eeccceeEEeeeccccceeeeecCC
Confidence            876 568999999888887666554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=2.4e-06  Score=79.72  Aligned_cols=96  Identities=10%  Similarity=0.083  Sum_probs=68.2

Q ss_pred             eeEEeeccCCCEEEEEecCCC------eEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEEEcc
Q psy951          326 IEALDIDPVDEIIYWVDSYDR------NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML  399 (428)
Q Consensus       326 ~~~l~~d~~~~~lyWtd~~~~------~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~  399 (428)
                      +-++++|+. +.||++|....      .++|...+|   ...+.+..++..|+||++|..++.||++|+...+|.+.+++
T Consensus       132 ~nd~~~d~~-G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         132 IDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             EEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CcceeEEec-cceeecccccccccCcceeEEEeccc---ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEc
Confidence            446778874 46888886532      688888887   34566677899999999999999999999999999999886


Q ss_pred             Cc--ceeEEEe--cccCCCCCCCccccccc
Q psy951          400 EA--QKGQVQA--GASRHQNGVPASSQRNL  425 (428)
Q Consensus       400 g~--~~~~l~~--~~~~~~~~~p~~~~~~~  425 (428)
                      +.  .......  .........|-++++|-
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDS  237 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             CCCceeccccceeeeccCCccceeeeeEcC
Confidence            43  2221111  11123344588888874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.63  E-value=3.8e-06  Score=77.41  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=73.4

Q ss_pred             CEEEeeCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe--EEEEeCCCCccc
Q psy951            1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR--QTILSGSDKLQH   78 (428)
Q Consensus         1 lyWtd~~~~~~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~--~~i~~~~~~~~~   78 (428)
                      ||++|.... +|.+.+.+|+... +.. .-..|.||+++.. + +||-++...+.+..+.+++...  ..+.... ....
T Consensus        41 l~vt~~~~~-~I~~i~p~g~~~~-~~~-~~~~~~gla~~~d-G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  114 (302)
T d2p4oa1          41 IFVTNHEVG-EIVSITPDGNQQI-HAT-VEGKVSGLAFTSN-G-DLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIF  114 (302)
T ss_dssp             EEEEETTTT-EEEEECTTCCEEE-EEE-CSSEEEEEEECTT-S-CEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSC
T ss_pred             EEEEeCCCC-EEEEEeCCCCEEE-EEc-CCCCcceEEEcCC-C-CeEEEecCCceEEEEEecccccceeeccccC-Cccc
Confidence            588888765 8999999998543 333 4468999999975 5 6999999888888888765432  2333322 4556


Q ss_pred             eeeeec-cccEEEEEeCCCCceeeeccCCC
Q psy951           79 PISLDV-FENNIYWLARDTGSLYKQDKFGR  107 (428)
Q Consensus        79 p~~l~~-~~~~lYwtD~~~~~I~~~~~~g~  107 (428)
                      |-++.+ ..+++|.++...+.|++.+..++
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cceeEEccCCCEEeeccccccceeeeccCC
Confidence            777775 46789999988888988887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.60  E-value=3.8e-06  Score=77.44  Aligned_cols=99  Identities=11%  Similarity=0.054  Sum_probs=74.1

Q ss_pred             ccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccC---CceEEEEe---ccccceeeeeeccCCeEEEEeCCCCc
Q psy951          319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK---GQVQAVIS---DERRIEALDIDPVDEIIYWVDSYDRN  392 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~---~~~~~i~~---~~~~p~glavD~~~~~lYwtd~~~~~  392 (428)
                      +..++..+-++++++..+.+||+|...++|++..+|....   .+..+.+.   ....|.|+++|.. ++||.+..+...
T Consensus       143 ~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~-GnlWva~~~~g~  221 (295)
T d2ghsa1         143 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE-GHIWNARWGEGA  221 (295)
T ss_dssp             EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT-SCEEEEEETTTE
T ss_pred             EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCC-CCEEeeeeCCCc
Confidence            3455667889999999999999999999999999886311   22333332   4668999999975 578888888888


Q ss_pred             EEEEEccCcceeEEEecccCCCCCCCccccc
Q psy951          393 IRRSFMLEAQKGQVQAGASRHQNGVPASSQR  423 (428)
Q Consensus       393 I~~~~~~g~~~~~l~~~~~~~~~~~p~~~~~  423 (428)
                      |.+-+-+|+..+++     .-|-..|.+++.
T Consensus       222 V~~~dp~G~~~~~i-----~lP~~~~T~~~F  247 (295)
T d2ghsa1         222 VDRYDTDGNHIARY-----EVPGKQTTCPAF  247 (295)
T ss_dssp             EEEECTTCCEEEEE-----ECSCSBEEEEEE
T ss_pred             eEEecCCCcEeeEe-----cCCCCceEEEEE
Confidence            99999888866655     345556666654

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.5e-08  Score=62.33  Aligned_cols=31  Identities=32%  Similarity=0.872  Sum_probs=28.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      ||+|||+|+... +.|+|.|++||+|.+||..
T Consensus         8 PC~n~g~C~~~~-~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           8 PCQNDATCLDQI-GEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCCSSCEEEECS-SCEEEECCTTEESSSSCEE
T ss_pred             CCCCCCEEECCC-CCEEEeCCCCCccCcCeeC
Confidence            799999999876 5799999999999999974

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.7e-08  Score=62.30  Aligned_cols=30  Identities=37%  Similarity=0.849  Sum_probs=27.6

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~  220 (428)
                      +|+|||+|++.. +.|+|.|++||+|.+||.
T Consensus        10 PC~ngg~C~~~~-~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_          10 PCLNGGSCKDDI-NSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTCEEEEET-TEEEEECCTTCCSTTSCC
T ss_pred             CCCCCcEEEcCC-CCEEEECCCCCCCCCCCC
Confidence            899999999877 579999999999999984

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.5e-08  Score=58.61  Aligned_cols=35  Identities=37%  Similarity=0.925  Sum_probs=29.9

Q ss_pred             CCCCCCCEEeeCC--CCceEecCCCCCccCccCCCCC
Q psy951          189 CQCQNGGMCAESE--TGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       189 c~C~ngg~C~~~~--~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      |.|+|||+|+...  .+-..|.||.+|.|.+||.+..
T Consensus         2 C~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt~   38 (40)
T d2i9aa1           2 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   38 (40)
T ss_dssp             CCCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             CccccCCEEEEEehhcCCEEecCCcccCceeEEeccc
Confidence            7899999998764  3457899999999999998765

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.7e-08  Score=60.07  Aligned_cols=29  Identities=28%  Similarity=0.964  Sum_probs=26.8

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCE  219 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce  219 (428)
                      +|+|||+|+... +.|+|.|++||+|.+||
T Consensus         7 PC~ngg~C~~~~-~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           7 PCLHNGRCLDKI-NEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CSTTTCEEEECS-SCEEEECCTTEESSSSC
T ss_pred             CCCCCcEEECCC-CCeEEECCCCCCCCCcC
Confidence            899999999876 57999999999999997

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.1e-08  Score=62.73  Aligned_cols=31  Identities=42%  Similarity=1.032  Sum_probs=28.3

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      ||+|||+|+... +.|.|.|++||+|.+||+.
T Consensus         7 PC~ngg~C~~~~-~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           7 PCQNQGKCKDGL-GEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CCCSSCEECCCS-SSCCEECCTTEETTTTCEE
T ss_pred             CCCCCcEEECCC-CCEEEECCCCCCcCcCeEc
Confidence            899999999876 5799999999999999975

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.49  E-value=3.3e-08  Score=61.09  Aligned_cols=29  Identities=41%  Similarity=0.945  Sum_probs=26.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCE  219 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce  219 (428)
                      +|+|||+|+... +.|.|.|++||+|.+||
T Consensus         9 PC~ngg~C~~~~-~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           9 PCQNGGSCKDQL-QSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CCCTTCEEEEET-TEEEEECCTTEESTTSC
T ss_pred             CCCCCCEEECCC-CCeEEECCCCCcCCCCC
Confidence            899999999877 57999999999999997

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.2e-08  Score=60.76  Aligned_cols=34  Identities=41%  Similarity=0.900  Sum_probs=29.4

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCCCCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      ||+|||+|+... .+.|.|.|++||+|.+||.+..
T Consensus         5 PC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           5 RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             CSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            899999999754 3579999999999999998753

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.2e-08  Score=62.76  Aligned_cols=39  Identities=36%  Similarity=0.873  Sum_probs=32.2

Q ss_pred             CCCCCC-CCCCCccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          136 PNPCSQ-SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~-~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      +|+|.. ++|+|+|.+++++|+|.|++|| .+.++  +++|.+
T Consensus         1 idEC~~~~~C~~~C~n~~Gsy~C~C~~Gy-~L~~d--~~~C~a   40 (41)
T d1i0ua2           1 IDECQDPDTCSQLCVNLEGGYKCQCEEGF-QLDPH--TKACKA   40 (41)
T ss_dssp             CCTTTTTTSCSSCEECSSSCCEECCCTTE-EECTT--TCCEEE
T ss_pred             CccCCCCCCCCCEeECCCCCEEeECCCCC-eECCC--CCcccc
Confidence            478875 4899999999999999999999 67654  566754

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.3e-08  Score=61.21  Aligned_cols=30  Identities=33%  Similarity=0.944  Sum_probs=27.7

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~  220 (428)
                      +|.|+|+|++.. |.|+|.|++||+|.+||.
T Consensus        12 pC~n~g~C~n~~-g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1          12 PCEHAGKCINTL-GSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             SSSTTCEEEECS-SSEEEECCTTEESTTSCE
T ss_pred             CCCCCcEeECCC-CCEEeECCCCCcCCCCcC
Confidence            789999999987 679999999999999986

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.8e-08  Score=61.88  Aligned_cols=34  Identities=32%  Similarity=0.812  Sum_probs=28.9

Q ss_pred             CCCCCCC--CCCCCccccCCCcceecCCCCCCCCCCC
Q psy951          135 APNPCSQ--SPCSHLCLVIPGGYQCACPENATPKLPG  169 (428)
Q Consensus       135 ~~n~C~~--~~C~~~C~~~~~~~~C~C~~g~~~~~~~  169 (428)
                      ++|+|..  ++|+|+|++.+++|+|.|++|| .|.++
T Consensus         1 G~neC~~~nggC~h~C~n~~g~~~C~C~~Gy-~L~d~   36 (40)
T d3bpse1           1 GTNECLDNNGGCSHVCNDLKIGYECLCPDGF-QLVAQ   36 (40)
T ss_dssp             CSCGGGTGGGGCSSEEEECSSSEEEECCTTC-CEETT
T ss_pred             CcccCCCCCCCCcCEEEcCCCCEEEECCCCC-EECCC
Confidence            4689975  4899999999999999999999 66543

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.34  E-value=1.2e-07  Score=60.34  Aligned_cols=31  Identities=26%  Similarity=0.808  Sum_probs=27.4

Q ss_pred             CCCCCCEEeeCCCCceEecCCC-CCccCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQ-DFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~-gy~G~~Ce~  220 (428)
                      +|+|||+|+....+.|+|.|+. ||+|.+||+
T Consensus         9 PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            8999999997655689999986 999999986

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.1e-07  Score=60.12  Aligned_cols=32  Identities=31%  Similarity=0.772  Sum_probs=27.4

Q ss_pred             CCCCCCEEeeCCCCceEecCC-CCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCR-QDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~-~gy~G~~Ce~~  221 (428)
                      +|+|||+|+....+.|+|.|+ +||+|.+||..
T Consensus         8 PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~p   40 (41)
T d1cvua2           8 PCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (41)
T ss_dssp             CCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCEEEECCCCCEEEeCcCCCcCCcCcCcC
Confidence            899999998764467999997 59999999863

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.3e-08  Score=60.25  Aligned_cols=31  Identities=35%  Similarity=0.894  Sum_probs=28.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|+|||+|+... +.|+|.|++||.|.+||..
T Consensus         8 pC~ngg~C~~~~-~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           8 SCSGHGECVETI-NNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             GGGGSEEEEEET-TEEEEEECTTEESTTSCEE
T ss_pred             cCCCCcEEECCC-CCEEEeCCCCCcCcCcCcc
Confidence            799999999876 6799999999999999864

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.5e-07  Score=59.11  Aligned_cols=31  Identities=39%  Similarity=0.887  Sum_probs=28.1

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      +|+|||+|+... +.|+|.|++||.|.+||..
T Consensus         8 pC~ngg~C~~~~-~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           8 SCSKQGECLETI-GNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             GGGGSEEEEECS-SSEEEEECTTEESTTSCEE
T ss_pred             cCCCCcEEECCC-CCeEEeCCCCccCCCCCCC
Confidence            899999999887 5799999999999999864

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.9e-07  Score=59.16  Aligned_cols=37  Identities=38%  Similarity=0.884  Sum_probs=30.5

Q ss_pred             CCCCC---CCCCCccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          137 NPCSQ---SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       137 n~C~~---~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      |+|..   ++|+|+|++.+++|+|.|++|| .|.++  +++|.
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy-~L~~d--~~tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEY-FLHDD--MKNCG   40 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTC-EECTT--SSCEE
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCC-EECCC--CCeec
Confidence            57863   4899999999999999999999 77654  56664

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.9e-07  Score=60.46  Aligned_cols=39  Identities=26%  Similarity=0.629  Sum_probs=31.3

Q ss_pred             CCCCCCC-----CCCCccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          136 PNPCSQS-----PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~~-----~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      +|+|...     +|+++|++++++|+|.|++|| .+..+  +++|.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy-~l~~d--~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGY-VLHRN--KRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTE-EECTT--SSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCC-eECCC--CCCccC
Confidence            4778643     599999999999999999999 66654  577764

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=2.3e-07  Score=60.05  Aligned_cols=38  Identities=34%  Similarity=0.774  Sum_probs=29.7

Q ss_pred             CCCCCCC-----CCCCccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          136 PNPCSQS-----PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       136 ~n~C~~~-----~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      +|+|...     +|+|+|++++++|+|.|++|| .+.++  +++|.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy-~L~~d--~~tC~   43 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGY-ILHQN--KHTCS   43 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTE-EECTT--SSCEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCC-EECCC--CCccc
Confidence            4677642     599999999999999999999 66654  56665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.14  E-value=0.0021  Score=56.62  Aligned_cols=98  Identities=8%  Similarity=0.057  Sum_probs=65.2

Q ss_pred             ccccccceeEEeeccCCCEEEEEecCC--CeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          319 VISDERRIEALDIDPVDEIIYWVDSYD--RNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~~lyWtd~~~--~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      .......|.++++++....+|.+....  .+|....+..   .+....+..-..|.++|++..++.||.+....+.|.+-
T Consensus       195 ~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         195 TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             EEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCcceeeccccccccccccccceeeeeeeeecCC---CeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            344556788999999999999876543  4676655432   22222233345799999999999999999998899998


Q ss_pred             EccCc-ceeEEEecccCCCCCCCccc
Q psy951          397 FMLEA-QKGQVQAGASRHQNGVPASS  421 (428)
Q Consensus       397 ~~~g~-~~~~l~~~~~~~~~~~p~~~  421 (428)
                      ++... ..+++-. + .+|+++-.+|
T Consensus       272 D~~t~~~~~~~~v-g-~~P~~~g~f~  295 (301)
T d1l0qa2         272 DTATNTITATMAV-G-KNPYASGQFI  295 (301)
T ss_dssp             ETTTTEEEEEEEC-S-SSEECCSSCE
T ss_pred             ECCCCeEEEEEeC-C-CCCcEeEEEc
Confidence            87543 3344432 2 3455444433

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.1e-07  Score=59.33  Aligned_cols=30  Identities=27%  Similarity=0.821  Sum_probs=25.9

Q ss_pred             CCCCCC-CCCCCccccCCCcceecCCCCCCCC
Q psy951          136 PNPCSQ-SPCSHLCLVIPGGYQCACPENATPK  166 (428)
Q Consensus       136 ~n~C~~-~~C~~~C~~~~~~~~C~C~~g~~~~  166 (428)
                      +|+|.. ++|++.|++++++|+|.|++|| .+
T Consensus         2 idEC~~~~~C~~~C~N~~Gsy~C~C~~Gy-~l   32 (40)
T d1dx5i3           2 IDECENGGFCSGVCHNLPGTFECICGPDS-AL   32 (40)
T ss_dssp             CCHHHHCSSCSSEEEECSSSEEEEECSSS-SC
T ss_pred             ccccCCCcCccCEeeCCCCCeEeECCCCC-ee
Confidence            467764 5899999999999999999999 55

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.5e-07  Score=55.24  Aligned_cols=35  Identities=26%  Similarity=0.664  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      ..|+|.++||+|  .|++..++|+|.|++||       .|..|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~-------~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGF-------EGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTC-------CSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCC-------CCCCCC
Confidence            468999999999  99999999999999999       677775

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5e-07  Score=57.80  Aligned_cols=39  Identities=31%  Similarity=0.685  Sum_probs=30.8

Q ss_pred             CCCCCCCC--CCCCccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCSQS--PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~~~--~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      .+|+|...  .|.+.|++++++|.|.|++|| .+.+.  +..|.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy-~l~~d--~~~C~   42 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDF-ELNPT--RVGCV   42 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTC-EECTT--SSBEE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCC-EECCC--CCccc
Confidence            56888753  577799999999999999999 66553  46664

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6.8e-07  Score=55.63  Aligned_cols=35  Identities=31%  Similarity=0.821  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          136 PNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      +|+|..+||+|  +|++..++|+|.|++||       .|..|+.
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~-------~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGY-------EGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTE-------ESSSSCE
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCC-------ccCcCee
Confidence            58999999999  99999999999999999       6788863

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6.7e-07  Score=58.25  Aligned_cols=31  Identities=32%  Similarity=1.021  Sum_probs=27.2

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      +|.| |+|+... +.|.|.|++||+|.+||.+.
T Consensus        15 PC~n-G~C~~~~-~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1          15 CCGH-GTCIDGI-GSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             TTTS-EEECCCS-SCCCEEECTTEESTTSCEEC
T ss_pred             CCCC-CEEECCC-CCCeEeCCCCCcCCCccccc
Confidence            7888 7999877 56999999999999999865

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.7e-06  Score=57.75  Aligned_cols=34  Identities=35%  Similarity=0.801  Sum_probs=28.5

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCCCCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCENYTG  223 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~~~  223 (428)
                      +|+|||+|.... ...|+|.|++||+|.+||....
T Consensus        13 ~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~~l   47 (53)
T d3egfa_          13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             CSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             CCCCCcEeeccCCCCCeEeECCCCCcCCCCccCCc
Confidence            799999998543 3569999999999999997643

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-06  Score=57.45  Aligned_cols=33  Identities=27%  Similarity=0.692  Sum_probs=28.2

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      +|+|||+|.... .+.|+|.|+.||+|.+||...
T Consensus        11 ~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~d   44 (48)
T d1nqlb_          11 YCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   44 (48)
T ss_dssp             EECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcCc
Confidence            799999998644 357999999999999999754

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.1e-06  Score=53.35  Aligned_cols=33  Identities=36%  Similarity=0.893  Sum_probs=29.6

Q ss_pred             CCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      |+|.++||+|  +|++..++|+|.|++||       .|..|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~-------~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGF-------TGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTE-------ESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCC-------CCCCcC
Confidence            6899999999  99999999999999999       677774

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2e-06  Score=59.85  Aligned_cols=36  Identities=31%  Similarity=0.732  Sum_probs=28.9

Q ss_pred             CCCCCCEEee----CCCCceEecCCCCCccCccCCCCCCC
Q psy951          190 QCQNGGMCAE----SETGDLTCNCRQDFAGTFCENYTGIG  225 (428)
Q Consensus       190 ~C~ngg~C~~----~~~g~~~C~C~~gy~G~~Ce~~~~~~  225 (428)
                      +|+|||+|..    ...+.|.|.|++||+|.+||......
T Consensus        13 ~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~   52 (63)
T d1haea_          13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK   52 (63)
T ss_dssp             TSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSS
T ss_pred             cCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCcc
Confidence            7999999963    22357999999999999999866443

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-06  Score=54.07  Aligned_cols=34  Identities=32%  Similarity=0.769  Sum_probs=30.5

Q ss_pred             CCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      |+|.++||+|  .|++..++|.|.|++||       .|..|+.
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~-------~G~~Cei   36 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGF-------EGKNCEL   36 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTE-------ETTTTCE
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCC-------CcCcCeE
Confidence            6899999999  99999999999999999       6788863

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=8.2e-07  Score=54.60  Aligned_cols=34  Identities=26%  Similarity=0.642  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          136 PNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      .|+|.++||+|  .|++..++|+|.|++||       .|..|+
T Consensus         2 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~-------~G~~Ce   37 (37)
T d2c4fl1           2 GDQCASSPCQNGGSCKDQLQSYICFCLPAF-------EGRNCE   37 (37)
T ss_dssp             CCGGGGCCCCTTCEEEEETTEEEEECCTTE-------ESTTSC
T ss_pred             cccCCCCCCCCCCEEECCCCCeEEECCCCC-------cCCCCC
Confidence            58999999998  99999999999999999       667774

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.6e-06  Score=55.18  Aligned_cols=32  Identities=22%  Similarity=0.511  Sum_probs=28.6

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .|+|||.|.....+.+.|.|+.||+|.+||..
T Consensus        15 yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~~   46 (50)
T d1ioxa_          15 YCIKGRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             SCTTCCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             CccCCeEEEeCCCCCcEeECCCCCeeCCCccc
Confidence            69999999877767899999999999999974

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.5e-06  Score=55.66  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=28.8

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYT  222 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~~  222 (428)
                      .|+|||.|.....+.+.|.|++||.|.+||...
T Consensus        14 yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~~~   46 (49)
T d1moxc_          14 FCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD   46 (49)
T ss_dssp             SSTTEEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             EeeCCeEEecCCCCCcEeECCCCCEecCCcccc
Confidence            699999997776678999999999999999753

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3e-06  Score=53.74  Aligned_cols=35  Identities=31%  Similarity=0.897  Sum_probs=30.3

Q ss_pred             CCCCCC--CCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          135 APNPCS--QSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       135 ~~n~C~--~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      .+|+|.  .++|.+  +|++.+++|+|.|++||       .|..|+
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~-------~G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGY-------TGPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTE-------ESTTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCC-------cCCCCc
Confidence            468887  468988  99999999999999999       677776

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3e-06  Score=56.74  Aligned_cols=31  Identities=32%  Similarity=0.761  Sum_probs=25.5

Q ss_pred             CCCCccccCCCcceecCCCCCCCCCCCCCCcccc
Q psy951          143 PCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       143 ~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      .|+|+|++++++|+|.|++|| .+..+  +++|.
T Consensus        21 ~c~~~C~Nt~GsY~C~C~~Gy-~l~~d--~~tC~   51 (53)
T d1apqa_          21 QCQHLCHNYVGGYFCSCRPGY-ELQED--RHSCQ   51 (53)
T ss_dssp             TTSSEEEEETTEEEEECSTTC-EECTT--SSCEE
T ss_pred             CccCEeEcCCCCeEeECCCCC-eECCC--CCcee
Confidence            478899999999999999999 66553  46665

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.3e-06  Score=55.63  Aligned_cols=37  Identities=24%  Similarity=0.643  Sum_probs=33.1

Q ss_pred             CCCCCCCCCCCC-ccccCCCcceecCCCCCCCCCCCCCCcccccC
Q psy951          135 APNPCSQSPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       135 ~~n~C~~~~C~~-~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      ..|+|.++||+| .|++..++|+|.|++||       .|..|+..
T Consensus         7 ~~~~C~~~PC~nG~C~~~~~~y~C~C~~G~-------~G~~Ce~~   44 (48)
T d1autl1           7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGW-------EGRFCQRE   44 (48)
T ss_dssp             SCCSSSSTTTTSEEECCCSSCCCEEECTTE-------ESTTSCEE
T ss_pred             CCCcccCCCCCCCEEECCCCCCeEeCCCCC-------cCCCcccc
Confidence            568999999999 99999999999999999       67888754

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.1e-06  Score=55.08  Aligned_cols=35  Identities=29%  Similarity=0.596  Sum_probs=30.3

Q ss_pred             CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          142 SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       142 ~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|+|+|++++++|+|.|++|| .|.++  +++|.+..
T Consensus         7 GgC~~~C~~~~g~~~C~C~~Gy-~L~~D--~~tC~~~~   41 (50)
T d1autl2           7 GGCTHYCLEEVGWRRCSCAPGY-KLGDD--LLQCHPAV   41 (50)
T ss_dssp             GGCSSEEEECSSSEEEECCTTE-EECTT--SSCEEECS
T ss_pred             CCcccEeecCCCCeEEECCCCC-EECCC--CCccccCC
Confidence            4899999999999999999999 77765  68898654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5.4e-06  Score=52.83  Aligned_cols=29  Identities=31%  Similarity=0.854  Sum_probs=25.8

Q ss_pred             CCCCCCCC--CCCC-ccccCCCcceecCCCCC
Q psy951          135 APNPCSQS--PCSH-LCLVIPGGYQCACPENA  163 (428)
Q Consensus       135 ~~n~C~~~--~C~~-~C~~~~~~~~C~C~~g~  163 (428)
                      .+|+|...  .|.+ .|++++++|.|.|++||
T Consensus         2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy   33 (44)
T d1lmja1           2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGY   33 (44)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSE
T ss_pred             cccccCCCCCCCCCCEeEcCCCCeEEeCCCCC
Confidence            57899864  6887 99999999999999999

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=6.8e-06  Score=52.20  Aligned_cols=29  Identities=24%  Similarity=0.639  Sum_probs=25.1

Q ss_pred             CCCCCCCC--CCCCccccCCCcceecCCCCC
Q psy951          135 APNPCSQS--PCSHLCLVIPGGYQCACPENA  163 (428)
Q Consensus       135 ~~n~C~~~--~C~~~C~~~~~~~~C~C~~g~  163 (428)
                      .+|+|...  .|.+.|++++++|.|.|++||
T Consensus         4 DidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy   34 (43)
T d1emoa1           4 DMDECKEPDVCKHGQCINTDGSYRCECPFGY   34 (43)
T ss_dssp             CCCSSSSTTSCSSSCCCCCSSCCCCCCCTTE
T ss_pred             ceeccCCcCCCCCCEeECCCCCeEeECCCCc
Confidence            57899765  466699999999999999999

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=5.9e-06  Score=54.23  Aligned_cols=37  Identities=27%  Similarity=0.617  Sum_probs=27.9

Q ss_pred             CCCCC--CCCCCccccCC------CcceecCCCCCCCCCCCCCCcccc
Q psy951          137 NPCSQ--SPCSHLCLVIP------GGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       137 n~C~~--~~C~~~C~~~~------~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      |+|..  ++|+|+|++.|      ++|+|.|+.|| .|.++  +++|.
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~-~L~~D--~~tCi   49 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM-LLARD--MRSCL   49 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTC-EECTT--SSCEE
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCC-EECCC--CCccc
Confidence            45653  48999998655      58999999999 77665  46664

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.6e-06  Score=53.98  Aligned_cols=33  Identities=27%  Similarity=0.762  Sum_probs=26.2

Q ss_pred             CCCCCC--CCCCC-ccccCCCcceecCCCCCCCCCCC
Q psy951          136 PNPCSQ--SPCSH-LCLVIPGGYQCACPENATPKLPG  169 (428)
Q Consensus       136 ~n~C~~--~~C~~-~C~~~~~~~~C~C~~g~~~~~~~  169 (428)
                      +|+|..  ..|.+ +|++++++|+|.|++|| .+.++
T Consensus         2 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy-~l~~d   37 (42)
T d1lmja2           2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGH-QLSPN   37 (42)
T ss_dssp             CCHHHHCSSTTTTSEEEEETTEEEEESCTTS-CCCSS
T ss_pred             ccccCCCCCCCCCCEeECCCCCeEEeCCCCC-eECcC
Confidence            467754  36777 99999999999999999 55543

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.3e-06  Score=52.79  Aligned_cols=35  Identities=29%  Similarity=0.680  Sum_probs=31.2

Q ss_pred             CCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCcccccC
Q psy951          137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      +.|..+||+|  +|++..++|+|.|++||       .|..|+..
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~-------~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGF-------YGPECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTE-------ESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCc-------cCCCCCCC
Confidence            6799999998  99999999999999999       67888754

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.70  E-value=6.9e-06  Score=54.27  Aligned_cols=36  Identities=14%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CCCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          141 QSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       141 ~~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      +++|+|+|++.+++|+|.|++|| .|.++  +++|.+..
T Consensus         5 NGgC~h~C~~~~~~~~C~C~~Gy-~L~~D--~~tC~~~~   40 (51)
T d1kigl_           5 NGGCDQFCREERSEVRCSCAHGY-VLGDD--SKSCVSTE   40 (51)
T ss_dssp             TTSSSSCCCEETTEECCCCCTTE-EECTT--SSCEEECS
T ss_pred             CCCcccEeEcCCCcEEeEcCCCC-EECCC--CCccccCC
Confidence            35899999999999999999999 77765  68898655

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.8e-06  Score=52.84  Aligned_cols=34  Identities=24%  Similarity=0.771  Sum_probs=30.6

Q ss_pred             CCCCCCCCCC--ccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      ++|..+||+|  .|++..++|+|.|++||       .|..|+.
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~-------~G~~Ce~   37 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGF-------SGLKCEQ   37 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTE-------ESTTSCE
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCC-------cCcCcCc
Confidence            6899999998  99999999999999999       6788864

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.3e-06  Score=53.76  Aligned_cols=38  Identities=24%  Similarity=0.571  Sum_probs=28.6

Q ss_pred             CCCCCCCC--CCC-CccccCCCcceecCCCCCCCCCCCCCCccc
Q psy951          135 APNPCSQS--PCS-HLCLVIPGGYQCACPENATPKLPGVAEIRC  175 (428)
Q Consensus       135 ~~n~C~~~--~C~-~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C  175 (428)
                      .+|+|...  .|. +.|++++++|.|.|++|| .+..+  +++|
T Consensus         2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy-~l~~~--~~~C   42 (43)
T d1uzka2           2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGY-YLNED--TRVC   42 (43)
T ss_dssp             ECCHHHHCGGGGBTSEEEECSSCEEEECCTTC-CBCTT--TCBB
T ss_pred             CcccccCCCCCcCCCEEECCCCCeEeECCCCC-eECcC--CCcc
Confidence            35778643  565 599999999999999999 66543  4555

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=3.6e-06  Score=55.59  Aligned_cols=35  Identities=14%  Similarity=0.394  Sum_probs=30.2

Q ss_pred             CCCCCccccCCCcceecCCCCCCCCCCCCCCcccccCc
Q psy951          142 SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       142 ~~C~~~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|+|+|++.+++|+|.|++|| .|.++  +++|.+..
T Consensus         8 GgC~h~C~n~~g~~~C~C~~Gy-~L~~D--~~tC~~~~   42 (51)
T d2p3ua1           8 GDCDQFCHEEQNSVVCSCARGY-TLADN--GKACIPTG   42 (51)
T ss_dssp             GGCSSEEEEETTEEEEECCTTE-EECTT--SSCEEESS
T ss_pred             CCcccEeecCCCCeEeEcCCCC-EECCC--CCccccCC
Confidence            4799999999999999999999 77765  68888654

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=51.08  Aligned_cols=32  Identities=22%  Similarity=0.608  Sum_probs=24.6

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENY  221 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~~  221 (428)
                      .|.||+.|.....+.+.|.|++||+|.+||..
T Consensus        13 yC~nG~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_          13 YCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             SCSSEEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             cCcCCEEEEeCCCCccEeECCCCceecCceee
Confidence            68895433344446799999999999999863

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.40  E-value=0.00099  Score=60.57  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             CCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCC------eEEEEeCCCCccceeeeecc-ccEEEEEeCCCCcee
Q psy951           28 TGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRN------RQTILSGSDKLQHPISLDVF-ENNIYWLARDTGSLY  100 (428)
Q Consensus        28 ~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~------~~~i~~~~~~~~~p~~l~~~-~~~lYwtD~~~~~I~  100 (428)
                      .++..|+|+++++..+ .|||+|...++|.+.++|+..      +..++........|-++.+. +++||.+.+..++|.
T Consensus       145 ~~~~~~Ng~~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         145 ADISIPNSICFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             EEESSEEEEEECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             eccCCcceeeecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceE
Confidence            4688999999999888 999999999999999998642      34445433345678888875 678999999999999


Q ss_pred             eeccCCCCceeeeccCCCCCccccc
Q psy951          101 KQDKFGRGVPVLISKDLVNPSGVKA  125 (428)
Q Consensus       101 ~~~~~g~~~~~~~~~~~~~p~~I~v  125 (428)
                      +.+.+|.-. ..+.....+|+.++.
T Consensus       224 ~~dp~G~~~-~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         224 RYDTDGNHI-ARYEVPGKQTTCPAF  247 (295)
T ss_dssp             EECTTCCEE-EEEECSCSBEEEEEE
T ss_pred             EecCCCcEe-eEecCCCCceEEEEE
Confidence            999986533 333333344444443

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.5e-05  Score=46.99  Aligned_cols=34  Identities=29%  Similarity=0.734  Sum_probs=27.5

Q ss_pred             CCCCCCCC--ccccCC--CcceecCCCCCCCCCCCCCCcccccCc
Q psy951          139 CSQSPCSH--LCLVIP--GGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       139 C~~~~C~~--~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      |..+||+|  +|++..  .+|+|.|++||       .|..|+...
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~-------~G~~Ce~~~   38 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGF-------AGKSCEIDT   38 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTC-------BSSSCCBCS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCC-------CCCCcCcCc
Confidence            66778888  888764  67999999999       688897543

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=3.4e-05  Score=51.92  Aligned_cols=35  Identities=23%  Similarity=0.528  Sum_probs=29.3

Q ss_pred             CCCCCccccCCC-cceecCCCCCCCCCCCCCCcccccCc
Q psy951          142 SPCSHLCLVIPG-GYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       142 ~~C~~~C~~~~~-~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|+|+|++.++ +|+|.|+.|| .|.++  +++|.+..
T Consensus         8 GgC~h~C~~~~~~~~~C~C~~Gy-~L~~D--~~tC~~~~   43 (57)
T d1rfnb_           8 GRCEQFCKNSADNKVVCSCTEGY-RLAEN--QKSCEPAV   43 (57)
T ss_dssp             GGCSSEEEECTTSCEEEECCTTE-EECTT--SSSEEECS
T ss_pred             CCcccEeeeCCCCCeEeECCCCC-EECCC--CCccccCC
Confidence            489999999984 7999999999 77665  68898754

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.22  E-value=3e-05  Score=48.84  Aligned_cols=35  Identities=34%  Similarity=0.922  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCC--ccccC-CCcceecCCC-CCCCCCCCCCCccccc
Q psy951          136 PNPCSQSPCSH--LCLVI-PGGYQCACPE-NATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~-~~~~~C~C~~-g~~~~~~~~~g~~C~~  177 (428)
                      +|+|..++|+|  +|+.. .++|+|.|+. ||       .|..|+.
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~-------~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGY-------SGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSE-------ETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCc-------CCcCcCc
Confidence            48899999999  99875 5889999986 89       6788864

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=4.6e-05  Score=47.67  Aligned_cols=35  Identities=29%  Similarity=0.841  Sum_probs=29.4

Q ss_pred             CCCCCCCCCCC--ccccC-CCcceecCC-CCCCCCCCCCCCccccc
Q psy951          136 PNPCSQSPCSH--LCLVI-PGGYQCACP-ENATPKLPGVAEIRCSA  177 (428)
Q Consensus       136 ~n~C~~~~C~~--~C~~~-~~~~~C~C~-~g~~~~~~~~~g~~C~~  177 (428)
                      .|+|..+||+|  +|+.. .++|+|.|+ +||       .|..|+.
T Consensus         1 ad~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy-------~G~~Ce~   39 (41)
T d1cvua2           1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGF-------YGENCTT   39 (41)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSE-------ETTTTCE
T ss_pred             CCcCcCCCCCCCCEEEECCCCCEEEeCcCCCc-------CCcCcCc
Confidence            37899999999  99876 578999997 599       6788874

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=6.4e-05  Score=47.54  Aligned_cols=39  Identities=23%  Similarity=0.566  Sum_probs=26.9

Q ss_pred             ccccCccCCCCCCCCCCCCCCCEEeeCCCCceEecCCCCCc--cCcc
Q psy951          174 RCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFA--GTFC  218 (428)
Q Consensus       174 ~C~~~~~~~~~~~~~c~C~ngg~C~~~~~g~~~C~C~~gy~--G~~C  218 (428)
                      +|.+++|+...   .+.  .++.|++.+ |+|.|.|++||.  |..|
T Consensus         1 sCvDidEC~~~---~~~--~~~~C~Nt~-Gsy~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1           1 SAVDMDECKEP---DVC--KHGQCINTD-GSYRCECPFGYILAGNEC   41 (43)
T ss_dssp             CCCCCCSSSST---TSC--SSSCCCCCS-SCCCCCCCTTEEESSSCE
T ss_pred             CCcceeccCCc---CCC--CCCEeECCC-CCeEeECCCCcccCCCcc
Confidence            36666665322   122  357899998 789999999998  5555

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=5.7e-05  Score=50.00  Aligned_cols=35  Identities=26%  Similarity=0.621  Sum_probs=28.5

Q ss_pred             CCCCCccccCCCc-ceecCCCCCCCCCCCCCCcccccCc
Q psy951          142 SPCSHLCLVIPGG-YQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       142 ~~C~~~C~~~~~~-~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|+|.|++.+++ |+|.|+.|| .+.++  +++|.+..
T Consensus         7 GGC~h~C~~~~~~~~~C~C~~Gy-~L~~D--~~tC~~~~   42 (53)
T d2bz6l1           7 GGCEQYCSDHTGTKRSCRCHEGY-SLLAD--GVSCTPTV   42 (53)
T ss_dssp             GGCSSEEEEETTTEEEEECCTTE-EECTT--SSCEEECS
T ss_pred             CCCcCEeeeCCCCCEEeECCCCC-EECCC--CCcccCCC
Confidence            4799999999864 799999999 77665  68887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.89  E-value=0.008  Score=54.11  Aligned_cols=124  Identities=15%  Similarity=0.037  Sum_probs=82.6

Q ss_pred             EEEeeCCCCeEEEEEc---CCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEeCC-----
Q psy951            2 FWAETGASPRIESAWM---DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGS-----   73 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~---DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~~~-----   73 (428)
                      |-++++.. +|.+..+   +|+.....-......|+++++|.. + ++|.++...+.|.+.+.++....+.....     
T Consensus        82 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~-g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          82 VATGWNAD-SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-T-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             EEEEECTT-SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS-S-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             EEEecCCc-eEEEEEecccccceeeccccCCccccceeEEccC-C-CEEeeccccccceeeeccCCcceeEecCCcccee
Confidence            45555544 3444444   344433333456778999999965 5 79999999999999999988766554421     


Q ss_pred             ---CCccceeeeeccccEEEEEeCCCCceeeeccCCCCcee--eeccCCCCCcccccccc
Q psy951           74 ---DKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPV--LISKDLVNPSGVKAYHA  128 (428)
Q Consensus        74 ---~~~~~p~~l~~~~~~lYwtD~~~~~I~~~~~~g~~~~~--~~~~~~~~p~~I~v~~~  128 (428)
                         .....|-+|+..++++|+++...++|++.+.++.....  ........|.+|++..+
T Consensus       159 ~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d  218 (302)
T d2p4oa1         159 NSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE  218 (302)
T ss_dssp             STTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred             eccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCC
Confidence               13445678888899999999999999999887543321  11123345556655433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.76  E-value=0.13  Score=47.23  Aligned_cols=87  Identities=10%  Similarity=0.007  Sum_probs=58.8

Q ss_pred             ceeEEeeccCCCEEEEEecCCCe-----EEEeeeccccCCceEE-EEe---ccccceeeeeec-cCCeEEEEeCCCCcEE
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRN-----IRRSFMLEAQKGQVQA-VIS---DERRIEALDIDP-VDEIIYWVDSYDRNIR  394 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~-----I~ra~l~g~~~~~~~~-i~~---~~~~p~glavD~-~~~~lYwtd~~~~~I~  394 (428)
                      .+.+|.++|..++||-+.++...     |-...++....-.... +..   ...+|.+++++. -++.||+++...+.|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            45578899999999999876542     4444443310111111 111   356899999986 5788999999999999


Q ss_pred             EEEccCcceeEEEeccc
Q psy951          395 RSFMLEAQKGQVQAGAS  411 (428)
Q Consensus       395 ~~~~~g~~~~~l~~~~~  411 (428)
                      +-..++..-+.+..-.+
T Consensus       336 v~~~~~~~l~~~~~~~v  352 (365)
T d1jofa_         336 IYRWKDEFLHRVARVRI  352 (365)
T ss_dssp             EEEEETTEEEEEEEEEC
T ss_pred             EEEEeCCcCcEEEEEEC
Confidence            99888876655554443

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00019  Score=44.45  Aligned_cols=30  Identities=23%  Similarity=0.651  Sum_probs=24.2

Q ss_pred             CCCCCCEEeeCC-CCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAESE-TGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~-~g~~~C~C~~gy~G~~Ce~  220 (428)
                      .|.| |+|.... -..+.|.|+.||+|.+|+-
T Consensus         9 yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           9 FCIH-GECKYVKELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             CCSS-EEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             EeEC-cEEeecCcCCCceeECCCCCeecCccc
Confidence            5888 9996443 2568999999999999974

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00013  Score=44.11  Aligned_cols=29  Identities=28%  Similarity=0.775  Sum_probs=26.3

Q ss_pred             CCCCCCCCCCCCccccCC-CcceecCCCCC
Q psy951          135 APNPCSQSPCSHLCLVIP-GGYQCACPENA  163 (428)
Q Consensus       135 ~~n~C~~~~C~~~C~~~~-~~~~C~C~~g~  163 (428)
                      -.+||....|++.|.+.. ++|.|.|..||
T Consensus         3 ~vDPCf~~~CE~qCqP~~~~~Y~CiCaeGF   32 (43)
T d1dx5i1           3 PVDPCFRANCEYQCQPLDQTSYLCVCAEGF   32 (43)
T ss_dssp             CCCGGGGCCCSSEEEECSSSCEEEECCTTE
T ss_pred             ccccccCCCcceeeeeCCCCcceEEecccc
Confidence            358999999999999887 78999999999

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00066  Score=42.68  Aligned_cols=23  Identities=30%  Similarity=0.897  Sum_probs=19.4

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~  214 (428)
                      .|.+ +.|++.+ |+|.|.|++||.
T Consensus        12 ~c~~-~~C~Nt~-Gsy~C~C~~Gy~   34 (43)
T d1uzka2          12 LCQG-GKCINTF-GSFQCRCPTGYY   34 (43)
T ss_dssp             GGBT-SEEEECS-SCEEEECCTTCC
T ss_pred             CcCC-CEEECCC-CCeEeECCCCCe
Confidence            3544 6999999 789999999998

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00075  Score=44.48  Aligned_cols=36  Identities=22%  Similarity=0.545  Sum_probs=28.4

Q ss_pred             CCCCCCCCCC--ccccCC--CcceecCCCCCCCCCCCCCCcccccCc
Q psy951          137 NPCSQSPCSH--LCLVIP--GGYQCACPENATPKLPGVAEIRCSAAV  179 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~~  179 (428)
                      ++|..++|.|  +|....  .+|+|.|++||       .|.+|+...
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy-------~G~~Ce~~~   46 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGY-------SGDRCQTRD   46 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTC-------CSSSSCCCS
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCC-------cCCCCccCC
Confidence            5677778888  887544  68999999999       678997643

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00088  Score=42.21  Aligned_cols=25  Identities=28%  Similarity=0.949  Sum_probs=20.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      .|.+ +.|++.. |+|.|.|++||.+.
T Consensus        12 ~C~~-~~C~Nt~-Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1          12 LCGR-GQCVNTP-GDFECKCDEGYESG   36 (44)
T ss_dssp             TTTT-SCEEEET-TEEEECCCSSEEEC
T ss_pred             CCCC-CEeEcCC-CCeEEeCCCCCccC
Confidence            4544 6899998 78999999999875

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.00067  Score=41.81  Aligned_cols=26  Identities=23%  Similarity=0.738  Sum_probs=22.0

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGT  216 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~  216 (428)
                      .|.....|++.+ |+|.|.|++||.|+
T Consensus         8 ~C~~~A~C~Nt~-Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           8 QCSVHAECRDYA-TGFCCRCVANYTGN   33 (40)
T ss_dssp             GSCTTEEEEECS-SCEEEEECTTEEEC
T ss_pred             CCCCCCEeecCC-CCeEeECCCCCcCC
Confidence            466778999987 67999999999954

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0018  Score=42.59  Aligned_cols=26  Identities=23%  Similarity=0.706  Sum_probs=21.0

Q ss_pred             CCEEeeCCCCceEecCCCCCc----cCccCC
Q psy951          194 GGMCAESETGDLTCNCRQDFA----GTFCEN  220 (428)
Q Consensus       194 gg~C~~~~~g~~~C~C~~gy~----G~~Ce~  220 (428)
                      .+.|+|.+ |+|.|.|++||.    |..|+.
T Consensus        23 ~~~C~Nt~-GsY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_          23 QHLCHNYV-GGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SSEEEEET-TEEEEECSTTCEECTTSSCEEC
T ss_pred             cCEeEcCC-CCeEeECCCCCeECCCCCceec
Confidence            36899998 789999999997    455653

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00034  Score=48.11  Aligned_cols=37  Identities=24%  Similarity=0.603  Sum_probs=27.8

Q ss_pred             CCCCCCCCCC--ccc-----cCCCcceecCCCCCCCCCCCCCCcccccCcc
Q psy951          137 NPCSQSPCSH--LCL-----VIPGGYQCACPENATPKLPGVAEIRCSAAVE  180 (428)
Q Consensus       137 n~C~~~~C~~--~C~-----~~~~~~~C~C~~g~~~~~~~~~g~~C~~~~~  180 (428)
                      |+|.+++|.|  .|.     +..++|.|.|++||       .|..|+....
T Consensus         7 ~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy-------~G~~Ce~~~~   50 (63)
T d1haea_           7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF-------TGARCTENVP   50 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTE-------ESTTSCEECC
T ss_pred             CCCcCCcCCCCCEEeecccccCCCCEEeECCCCC-------CCCCcCCCCC
Confidence            4556677777  774     45578999999999       7899986543

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0015  Score=40.75  Aligned_cols=24  Identities=33%  Similarity=0.944  Sum_probs=20.1

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCcc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAG  215 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G  215 (428)
                      .|. ++.|++.+ |+|.|.|++||..
T Consensus        11 ~C~-~~~C~Nt~-Gsy~C~C~~Gy~l   34 (42)
T d1lmja2          11 LCR-GGVCHNTE-GSYRCECPPGHQL   34 (42)
T ss_dssp             TTT-TSEEEEET-TEEEEESCTTSCC
T ss_pred             CCC-CCEeECCC-CCeEEeCCCCCeE
Confidence            454 47999999 7899999999983

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.3  Score=42.56  Aligned_cols=101  Identities=8%  Similarity=-0.041  Sum_probs=64.7

Q ss_pred             EEEeeCCCCeEEEEEcCCCCcEEEEe--CCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeE--EEEeCCCCcc
Q psy951            2 FWAETGASPRIESAWMDGSHRRSLVM--TGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQ--TILSGSDKLQ   77 (428)
Q Consensus         2 yWtd~~~~~~I~~a~~DG~~~~~l~~--~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~--~i~~~~~~~~   77 (428)
                      |.+..... +|..-+++......+++  ..-..|.+|++++..+ .||-+....+.|...+++.....  .+.... ...
T Consensus         7 ~v~~~~~~-~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~-~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~   83 (333)
T d1ri6a_           7 YIASPESQ-QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPG   83 (333)
T ss_dssp             EEEEGGGT-EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSS
T ss_pred             EEECCCCC-cEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCC
Confidence            55664444 67777776443322222  2346899999999988 99999988899988888755432  222211 233


Q ss_pred             ceeeee--ccccEEEEEeCCCCceeeeccC
Q psy951           78 HPISLD--VFENNIYWLARDTGSLYKQDKF  105 (428)
Q Consensus        78 ~p~~l~--~~~~~lYwtD~~~~~I~~~~~~  105 (428)
                      .|.+|+  ..+.+||.++.....|...+..
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            455544  5577899998877766655544

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.00051  Score=44.31  Aligned_cols=35  Identities=26%  Similarity=0.590  Sum_probs=27.9

Q ss_pred             CCCCCCCCCC--ccccCC--CcceecCCCCCCCCCCCCCCcccccC
Q psy951          137 NPCSQSPCSH--LCLVIP--GGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       137 n~C~~~~C~~--~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      ++|.+++|.|  +|...+  .+|+|.|+.||       .|.+|+..
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy-------~G~~Ce~~   43 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGY-------IGERCQYR   43 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTE-------ESTTSCEE
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCc-------ccCCCCcC
Confidence            5677788888  897644  67999999999       67888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.03  E-value=0.065  Score=46.35  Aligned_cols=103  Identities=9%  Similarity=0.088  Sum_probs=76.7

Q ss_pred             CCcceeeeecCccceeeccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCC
Q psy951          302 NGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDE  381 (428)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~  381 (428)
                      ....+..++....+....++--..|++++++|..++||-++...++|..-.+..   .+..-.+.....|.+++++..++
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---~~~~~~~~~~~~~~~~~~~~~~~   86 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAGSSPQGVAVSPDGK   86 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSEEEEEECTTSS
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---Cceeeeeeccccccccccccccc
Confidence            344566677776666666666678999999999999999998888888777654   22222334556799999999999


Q ss_pred             eEEEEeCCCCcEEEEEccCcceeEEE
Q psy951          382 IIYWVDSYDRNIRRSFMLEAQKGQVQ  407 (428)
Q Consensus       382 ~lYwtd~~~~~I~~~~~~g~~~~~l~  407 (428)
                      .+|.+......+.+.+..+......+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (301)
T d1l0qa2          87 QVYVTNMASSTLSVIDTTSNTVAGTV  112 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccceeeecccccceeeeec
Confidence            99999988888888777665444443

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0031  Score=36.70  Aligned_cols=23  Identities=35%  Similarity=1.009  Sum_probs=19.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCc
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~  214 (428)
                      +|.| |+|.+.. |.|.|.|.+||.
T Consensus         9 pCGn-GTCtNvi-GgFec~C~~GFe   31 (39)
T d1emoa2           9 PCGN-GTCKNVI-GGFECTCEEGFE   31 (39)
T ss_dssp             SSSS-SCEEECS-SSEEECCSSSSC
T ss_pred             ccCC-ceeeecc-cceEEeecCCcC
Confidence            6766 7899998 679999999998

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.002  Score=40.77  Aligned_cols=19  Identities=26%  Similarity=0.730  Sum_probs=17.3

Q ss_pred             CEEeeCCCCceEecCCCCCc
Q psy951          195 GMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~  214 (428)
                      +.|++.+ |+|.|.|++||.
T Consensus        16 ~~C~Nt~-gsy~C~C~~Gy~   34 (45)
T d1nt0a3          16 HYCHNYL-GGYYCSCRVGYI   34 (45)
T ss_dssp             SEEEEET-TEEEEECCTTEE
T ss_pred             CEeecCC-CCEEEeCCCCCE
Confidence            5899988 789999999997

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0031  Score=39.89  Aligned_cols=24  Identities=25%  Similarity=0.758  Sum_probs=20.0

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCE  219 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce  219 (428)
                      +.|++.+ |+|.|.|++||.    |..|+
T Consensus        16 ~~C~Nt~-Gsy~C~C~~Gy~l~~d~~tC~   43 (45)
T d1szba2          16 HHCHNHL-GGFYCSCRAGYVLHRNKRTCS   43 (45)
T ss_dssp             SEEEEET-TEEEEECCTTEEECTTSSCEE
T ss_pred             CCCccCC-CCeEEECCCCCeECCCCCCcc
Confidence            6899988 789999999998    44554

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0017  Score=37.87  Aligned_cols=27  Identities=37%  Similarity=1.069  Sum_probs=22.8

Q ss_pred             CCCCC-CCCCC-ccccCCCcceecCCCCC
Q psy951          137 NPCSQ-SPCSH-LCLVIPGGYQCACPENA  163 (428)
Q Consensus       137 n~C~~-~~C~~-~C~~~~~~~~C~C~~g~  163 (428)
                      ++|+- ++|.+ +|.+..++|+|.|.+||
T Consensus         2 dECsignpCGnGTCtNviGgFec~C~~GF   30 (39)
T d1emoa2           2 DECSVGNPCGNGTCKNVIGGFECTCEEGF   30 (39)
T ss_dssp             CGGGTTCSSSSSCEEECSSSEEECCSSSS
T ss_pred             CccccCCccCCceeeecccceEEeecCCc
Confidence            56654 57877 88999999999999999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.089  Score=46.27  Aligned_cols=88  Identities=8%  Similarity=0.086  Sum_probs=66.9

Q ss_pred             ccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEE--eccccceeeeeeccCCeEEEEeCCCCcEEEE
Q psy951          319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRS  396 (428)
Q Consensus       319 ~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~--~~~~~p~glavD~~~~~lYwtd~~~~~I~~~  396 (428)
                      .++....+.+|+|+|..++||=+....++|..-.++.. +...+.+.  .....|.+|+++..++.||.++.....|..-
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~-~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD-DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            45666789999999999999998888888877777653 12223332  2456799999999999999999988888887


Q ss_pred             EccCcceeEEE
Q psy951          397 FMLEAQKGQVQ  407 (428)
Q Consensus       397 ~~~g~~~~~l~  407 (428)
                      ..+........
T Consensus       111 ~~~~~~~~~~~  121 (333)
T d1ri6a_         111 RLEDGLPVGVV  121 (333)
T ss_dssp             EEETTEEEEEE
T ss_pred             ccccccceecc
Confidence            77766555444

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.00081  Score=41.42  Aligned_cols=30  Identities=33%  Similarity=0.697  Sum_probs=22.5

Q ss_pred             CCCC--ccccCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          143 PCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       143 ~C~~--~C~~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      .|..  .|.+.+++|.|.|++||    .| .|..|.+
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~Gy----~G-dG~~C~~   39 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVANY----TG-NGRQCVA   39 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECTTE----EE-CSSSEEE
T ss_pred             CCCCCCEeecCCCCeEeECCCCC----cC-CCCEeeC
Confidence            4544  78999999999999999    23 4566653

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0055  Score=37.98  Aligned_cols=19  Identities=21%  Similarity=0.695  Sum_probs=17.3

Q ss_pred             CEEeeCCCCceEecCCCCCc
Q psy951          195 GMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~  214 (428)
                      ..|++.+ |+|+|.|++||.
T Consensus        13 ~~C~n~~-Gsy~C~C~~Gy~   31 (42)
T d1nzia2          13 HFCNNFI-GGYFCSCPPEYF   31 (42)
T ss_dssp             SEEEEET-TEEEEECCTTCE
T ss_pred             CEeecCC-CCEEEeCCCCCE
Confidence            5899988 789999999998

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0029  Score=39.17  Aligned_cols=24  Identities=29%  Similarity=0.898  Sum_probs=19.9

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCE  219 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce  219 (428)
                      +.|++.. |+|.|.|++||.    |..|+
T Consensus        12 ~~C~n~~-Gsy~C~C~~Gy~L~~d~~~C~   39 (41)
T d1i0ua2          12 QLCVNLE-GGYKCQCEEGFQLDPHTKACK   39 (41)
T ss_dssp             SCEECSS-SCCEECCCTTEEECTTTCCEE
T ss_pred             CEeECCC-CCEEeECCCCCeECCCCCccc
Confidence            5899888 789999999998    55564

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0042  Score=41.07  Aligned_cols=36  Identities=33%  Similarity=0.727  Sum_probs=27.4

Q ss_pred             CCCCCCCEEeeCC-CCceEe-cCCCCCccCccCCCCCC
Q psy951          189 CQCQNGGMCAESE-TGDLTC-NCRQDFAGTFCENYTGI  224 (428)
Q Consensus       189 c~C~ngg~C~~~~-~g~~~C-~C~~gy~G~~Ce~~~~~  224 (428)
                      |+|.+++.|.... .+...| .|++||+|.+||.-...
T Consensus         1 CpC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~g   38 (55)
T d1kloa1           1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDG   38 (55)
T ss_dssp             CCSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTT
T ss_pred             CcCcCCCccceeCCCCCEEcCCCCCCCccCcccccCCc
Confidence            5788888876543 456788 69999999999975543

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0039  Score=38.98  Aligned_cols=20  Identities=35%  Similarity=1.009  Sum_probs=17.9

Q ss_pred             CCEEeeCCCCceEecCCCCCc
Q psy951          194 GGMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       194 gg~C~~~~~g~~~C~C~~gy~  214 (428)
                      .+.|++.. |+|.|.|++||.
T Consensus        14 ~~~C~Nt~-G~y~C~C~~Gy~   33 (43)
T d1uzka1          14 SGNCVNTP-GSYICDCPPDFE   33 (43)
T ss_dssp             TSEEEEET-TEEEEECCTTCE
T ss_pred             CCEeECCC-CCEEEecCCCCE
Confidence            37999998 689999999996

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=95.01  E-value=1.2  Score=40.25  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=63.1

Q ss_pred             ceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEE---EEe--ccccceeeeeeccCCeEEEEeCCCCcEEEEEcc
Q psy951          325 RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQA---VIS--DERRIEALDIDPVDEIIYWVDSYDRNIRRSFML  399 (428)
Q Consensus       325 ~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~---i~~--~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~  399 (428)
                      .++++.++|..++||.+|.+..+|.+..++..  +....   +..  .-..|.+++++..++.+|.+......|.+-+++
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS--GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCC--CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            67899999999999999999998888777652  22221   111  245799999999999999999999999999998


Q ss_pred             CcceeEE
Q psy951          400 EAQKGQV  406 (428)
Q Consensus       400 g~~~~~l  406 (428)
                      +.....+
T Consensus       224 ~~~~~~~  230 (365)
T d1jofa_         224 PATHMPV  230 (365)
T ss_dssp             TTTCCEE
T ss_pred             CCCceEE
Confidence            7655443

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0077  Score=36.78  Aligned_cols=20  Identities=35%  Similarity=0.743  Sum_probs=18.0

Q ss_pred             CEEeeCCCCceEecCCCCCcc
Q psy951          195 GMCAESETGDLTCNCRQDFAG  215 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~G  215 (428)
                      +.|++.+ |+|.|.|++||..
T Consensus        13 ~~C~N~~-Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3          13 GVCHNLP-GTFECICGPDSAL   32 (40)
T ss_dssp             SEEEECS-SSEEEEECSSSSC
T ss_pred             CEeeCCC-CCeEeECCCCCee
Confidence            6899998 6899999999984

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.008  Score=36.79  Aligned_cols=19  Identities=21%  Similarity=0.625  Sum_probs=17.1

Q ss_pred             CEEeeCCCCceEecCCCCCc
Q psy951          195 GMCAESETGDLTCNCRQDFA  214 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~  214 (428)
                      ..|++.+ |+|.|.|++||.
T Consensus        14 h~C~n~~-g~~~C~C~~Gy~   32 (40)
T d3bpse1          14 HVCNDLK-IGYECLCPDGFQ   32 (40)
T ss_dssp             SEEEECS-SSEEEECCTTCC
T ss_pred             CEEEcCC-CCEEEECCCCCE
Confidence            4899998 679999999998

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.017  Score=36.37  Aligned_cols=30  Identities=27%  Similarity=0.626  Sum_probs=21.9

Q ss_pred             CCCCCC-ccc--cCCCcceecCCCCCCCCCCCCCCccccc
Q psy951          141 QSPCSH-LCL--VIPGGYQCACPENATPKLPGVAEIRCSA  177 (428)
Q Consensus       141 ~~~C~~-~C~--~~~~~~~C~C~~g~~~~~~~~~g~~C~~  177 (428)
                      ++.|.| .|.  ....++.|.|++||       .|.+|+.
T Consensus        11 ~~yC~nG~C~~~~~~~~~~C~C~~gY-------~G~RCe~   43 (46)
T d1k36a_          11 NGYCLHGQCIYLVDMSQNYCRCEVGY-------TGVRCEH   43 (46)
T ss_dssp             CSSCSSEEEEEETTTTEEEEEECTTC-------SSTTSCC
T ss_pred             CCcCcCCEEEEeCCCCccEeECCCCc-------eecCcee
Confidence            356777 664  33368999999999       6788864

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.053  Score=34.70  Aligned_cols=19  Identities=21%  Similarity=0.725  Sum_probs=15.1

Q ss_pred             EEeeCC-----CCceEecCCCCCc
Q psy951          196 MCAESE-----TGDLTCNCRQDFA  214 (428)
Q Consensus       196 ~C~~~~-----~g~~~C~C~~gy~  214 (428)
                      .|+..+     .+.|+|.|++||.
T Consensus        17 ~Cl~~p~~~n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          17 LCLPAPQINPHSPKFTCACPDGML   40 (50)
T ss_dssp             EEEECCCCSTTCCSEEEECCTTCE
T ss_pred             ccCCCcCcccCCCCEEEeCCCCCE
Confidence            787543     3679999999998

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=0.04  Score=35.77  Aligned_cols=27  Identities=19%  Similarity=0.688  Sum_probs=21.9

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENY  221 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~  221 (428)
                      ..|++.+++.|+|.|+.||.    +..|+..
T Consensus        11 h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~   41 (53)
T d2bz6l1          11 QYCSDHTGTKRSCRCHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CEeeeCCCCCEEeECCCCCEECCCCCcccCC
Confidence            37888887789999999998    6678653

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.048  Score=34.93  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENYT  222 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~~  222 (428)
                      ..|++.+ ++|+|.|++||.    |..|+...
T Consensus        11 ~~C~~~~-g~~~C~C~~Gy~L~~D~~tC~~~~   41 (50)
T d1autl2          11 HYCLEEV-GWRRCSCAPGYKLGDDLLQCHPAV   41 (50)
T ss_dssp             SEEEECS-SSEEEECCTTEEECTTSSCEEECS
T ss_pred             cEeecCC-CCeEEECCCCCEECCCCCccccCC
Confidence            4899887 679999999998    67786533

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.035  Score=35.41  Aligned_cols=35  Identities=26%  Similarity=0.594  Sum_probs=23.8

Q ss_pred             CCCCC---CCCCC--ccccC-CCcceecCCCCCCCCCCCCCCcccccC
Q psy951          137 NPCSQ---SPCSH--LCLVI-PGGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       137 n~C~~---~~C~~--~C~~~-~~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      ++|..   +.|.|  .|... ...+.|.|++||       .|.+|+..
T Consensus         5 ~pC~~~~~~yClnGgcc~~~~~~~~~C~C~~gy-------~G~RCe~~   45 (49)
T d1moxc_           5 NDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGY-------VGARCEHA   45 (49)
T ss_dssp             ECCCCCSSCSSTTEEEEEETTTTEEEEEECTTE-------ESTTSCEE
T ss_pred             CccCcccCCEeeCCeEEecCCCCCcEeECCCCC-------EecCCccc
Confidence            45543   35666  45333 367999999999       67888753

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.053  Score=35.72  Aligned_cols=28  Identities=21%  Similarity=0.665  Sum_probs=22.7

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENYT  222 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~~  222 (428)
                      ..|++.+++.|+|.|++||.    |..|+...
T Consensus        12 h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~   43 (57)
T d1rfnb_          12 QFCKNSADNKVVCSCTEGYRLAENQKSCEPAV   43 (57)
T ss_dssp             SEEEECTTSCEEEECCTTEEECTTSSSEEECS
T ss_pred             cEeeeCCCCCeEeECCCCCEECCCCCccccCC
Confidence            47988877789999999998    67787643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.50  E-value=0.46  Score=43.13  Aligned_cols=69  Identities=14%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             eccccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEeccccceeeeeeccCCeEEEE
Q psy951          318 DVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWV  386 (428)
Q Consensus       318 ~~i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~~~~~p~glavD~~~~~lYwt  386 (428)
                      .+.+++..|-||++++.+++||.++....+|.+-.+++.........+.=-..|.+|.+|..++.++-+
T Consensus       200 ~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         200 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            355788899999999999999999999999999999874211121222333469999999877776554

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.048  Score=35.06  Aligned_cols=27  Identities=22%  Similarity=0.733  Sum_probs=21.8

Q ss_pred             CEEeeCCCCceEecCCCCCc----cCccCCCC
Q psy951          195 GMCAESETGDLTCNCRQDFA----GTFCENYT  222 (428)
Q Consensus       195 g~C~~~~~g~~~C~C~~gy~----G~~Ce~~~  222 (428)
                      ..|.+.+ ++|+|.|++||.    |..|+...
T Consensus        12 h~C~n~~-g~~~C~C~~Gy~L~~D~~tC~~~~   42 (51)
T d2p3ua1          12 QFCHEEQ-NSVVCSCARGYTLADNGKACIPTG   42 (51)
T ss_dssp             SEEEEET-TEEEEECCTTEEECTTSSCEEESS
T ss_pred             cEeecCC-CCeEeEcCCCCEECCCCCccccCC
Confidence            4798887 679999999998    67787543

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.048  Score=34.89  Aligned_cols=30  Identities=23%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             CCCCC--ccccCC-CcceecCCCCCCCCCCCCCCcccccC
Q psy951          142 SPCSH--LCLVIP-GGYQCACPENATPKLPGVAEIRCSAA  178 (428)
Q Consensus       142 ~~C~~--~C~~~~-~~~~C~C~~g~~~~~~~~~g~~C~~~  178 (428)
                      +.|.|  .|.... ..+.|.|+.||       .|.+|+..
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy-------~G~rCe~~   46 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGY-------IGARCERV   46 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTE-------ETTTTCEE
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCC-------eeCCCccc
Confidence            45666  554444 67999999999       67888754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.26  E-value=0.48  Score=42.99  Aligned_cols=54  Identities=9%  Similarity=0.134  Sum_probs=43.2

Q ss_pred             eEEEEEcCCCCcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCe
Q psy951           11 RIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNR   66 (428)
Q Consensus        11 ~I~~a~~DG~~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~   66 (428)
                      .-....-|+...+++.. ++..|+||++++.++ .||.++....+|.+..+++...
T Consensus       187 ~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAE-GFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWT  240 (340)
T ss_dssp             CEEEEEECSSCEEEEEE-EESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSC
T ss_pred             ceeEEEEcCCceEEEcC-CCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcc
Confidence            34445557776665544 788999999999888 9999999999999999987653

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.044  Score=33.39  Aligned_cols=26  Identities=27%  Similarity=0.792  Sum_probs=19.9

Q ss_pred             CCCCCCEEeeCCCCceEecCCCCCccCccCC
Q psy951          190 QCQNGGMCAESETGDLTCNCRQDFAGTFCEN  220 (428)
Q Consensus       190 ~C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce~  220 (428)
                      .|...|.|...     +|.|.+||+|..||.
T Consensus        16 ~g~~hG~C~~G-----~C~C~~Gw~G~~Ce~   41 (41)
T d1l3ya_          16 GGPGRGLCFCG-----KCRCHPGFEGSACQA   41 (41)
T ss_dssp             SHHHHEEEETT-----EEEECTTCCTTTTCC
T ss_pred             CCCCCCeEECC-----EEEcCCCCcccCccC
Confidence            34456888642     599999999999973

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.057  Score=30.02  Aligned_cols=24  Identities=33%  Similarity=1.072  Sum_probs=16.8

Q ss_pred             CCCCCEEeeCCCCceEecCCCCCccCccC
Q psy951          191 CQNGGMCAESETGDLTCNCRQDFAGTFCE  219 (428)
Q Consensus       191 C~ngg~C~~~~~g~~~C~C~~gy~G~~Ce  219 (428)
                      |.++|.|.=.     .|.|..||+|.+|.
T Consensus         5 C~ghG~C~CG-----~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           5 CSGHGQCSCG-----DCLCDSDWTGYYCN   28 (31)
T ss_dssp             SCCCTTCCST-----TTCCCTTEESSSSC
T ss_pred             ccCCCcccCC-----ceEccCCccccccc
Confidence            4455555322     39999999999984

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.47  E-value=1.5  Score=37.70  Aligned_cols=85  Identities=9%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             cCCcceeeeecCccceeec--cccccceeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEEEEe-------ccccc
Q psy951          301 SNGPEIRAYETHKRRFRDV--ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVIS-------DERRI  371 (428)
Q Consensus       301 s~~~~~~~~~~~~~~~~~~--i~~~~~~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~i~~-------~~~~p  371 (428)
                      +....+..+++...+....  ++....|.++++.|..+++|.+....++|..-.+..   .+....+.       ....|
T Consensus        15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t---~~~~~~~~~~~~~~~~~~~~   91 (346)
T d1jmxb_          15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSVPGEVGRSM   91 (346)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCSTTEEEECS
T ss_pred             cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc---CeeeeeecccccccccCCce
Confidence            4445677778877665553  355678999999999999999998888898777654   21221111       12468


Q ss_pred             eeeeeeccCCeEEEEeC
Q psy951          372 EALDIDPVDEIIYWVDS  388 (428)
Q Consensus       372 ~glavD~~~~~lYwtd~  388 (428)
                      .++++...++.||.+..
T Consensus        92 ~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          92 YSFAISPDGKEVYATVN  108 (346)
T ss_dssp             SCEEECTTSSEEEEEEE
T ss_pred             EEEEEecCCCEEEEEec
Confidence            99999999999998864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.10  E-value=11  Score=34.30  Aligned_cols=83  Identities=10%  Similarity=-0.039  Sum_probs=61.2

Q ss_pred             eeEEeeccCCCEEEEEecCCCeEEEeeeccccCCceEE-EEeccccceeeeeeccCCeEEEEeCCCCcEEEEEccCccee
Q psy951          326 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQA-VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG  404 (428)
Q Consensus       326 ~~~l~~d~~~~~lyWtd~~~~~I~ra~l~g~~~~~~~~-i~~~~~~p~glavD~~~~~lYwtd~~~~~I~~~~~~g~~~~  404 (428)
                      +.++.+.+....+|++-..+.+|........  ...++ -+..-..|.+++++..++.+|-+-.....|.+.+.+.....
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~--~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDL--NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCS--SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCC--CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            4467778888888898887777776655431  11222 22334579999999999999999998889999999888777


Q ss_pred             EEEecc
Q psy951          405 QVQAGA  410 (428)
Q Consensus       405 ~l~~~~  410 (428)
                      .++..+
T Consensus       243 ~~~~~g  248 (432)
T d1qksa2         243 AIEDTG  248 (432)
T ss_dssp             EEEECS
T ss_pred             EEeccC
Confidence            777555

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.78  E-value=0.099  Score=33.50  Aligned_cols=26  Identities=19%  Similarity=0.736  Sum_probs=20.2

Q ss_pred             EEeeCCCCceEecCCCCCc----cCccCCCC
Q psy951          196 MCAESETGDLTCNCRQDFA----GTFCENYT  222 (428)
Q Consensus       196 ~C~~~~~g~~~C~C~~gy~----G~~Ce~~~  222 (428)
                      .|++.+ +.|+|.|++||.    |..|+...
T Consensus        11 ~C~~~~-~~~~C~C~~Gy~L~~D~~tC~~~~   40 (51)
T d1kigl_          11 FCREER-SEVRCSCAHGYVLGDDSKSCVSTE   40 (51)
T ss_dssp             CCCEET-TEECCCCCTTEEECTTSSCEEECS
T ss_pred             EeEcCC-CcEEeEcCCCCEECCCCCccccCC
Confidence            577776 679999999997    66786543

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.63  E-value=0.17  Score=30.73  Aligned_cols=27  Identities=26%  Similarity=0.581  Sum_probs=19.5

Q ss_pred             CCCC-ccccCC--CcceecCCCCCCCCCCCCCCcccc
Q psy951          143 PCSH-LCLVIP--GGYQCACPENATPKLPGVAEIRCS  176 (428)
Q Consensus       143 ~C~~-~C~~~~--~~~~C~C~~g~~~~~~~~~g~~C~  176 (428)
                      -|-| .|.-..  ..+.|.|+.||       .|.+|+
T Consensus         9 yCihG~C~~i~~l~~~~C~C~~gY-------~G~RCq   38 (41)
T d1xdtr_           9 FCIHGECKYVKELRAPSCICHPGY-------HGERCH   38 (41)
T ss_dssp             CCSSEEECCBGGGTBCCEEECTTE-------ESTTCC
T ss_pred             EeECcEEeecCcCCCceeECCCCC-------eecCcc
Confidence            4666 664333  67899999999       678875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=80.33  E-value=9.7  Score=32.04  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=54.1

Q ss_pred             CCCeEEEEEcCCC-CcEEEEeCCCCCceeEEEcCCCCCEEEEEECCCCeEEEEEcCCCCeEEEEe-CCC---Cccceeee
Q psy951            8 ASPRIESAWMDGS-HRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS-GSD---KLQHPISL   82 (428)
Q Consensus         8 ~~~~I~~a~~DG~-~~~~l~~~~~~~P~glavD~~~~~~lYW~d~~~~~I~~~~ldG~~~~~i~~-~~~---~~~~p~~l   82 (428)
                      ....|...+++-. -..++-...-..|.+|++++..+ +||.+....+.|...+++.....-... ...   ....|.++
T Consensus        16 ~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~-~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v   94 (346)
T d1jmxb_          16 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF   94 (346)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC-EEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEE
Confidence            3446777777622 22222223345799999998888 999999999999999987654432222 110   11234444


Q ss_pred             --eccccEEEEEeCC
Q psy951           83 --DVFENNIYWLARD   95 (428)
Q Consensus        83 --~~~~~~lYwtD~~   95 (428)
                        +..+.++|.+...
T Consensus        95 ~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          95 AISPDGKEVYATVNP  109 (346)
T ss_dssp             EECTTSSEEEEEEEE
T ss_pred             EEecCCCEEEEEecC
Confidence              4456788887643