Psyllid ID: psy9578

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNKAF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHcHHHHHHHHHHcHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEcHHHHHHHHHccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mprvkrgvTARARHKKVLKQAkgyfgrrnsVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNKAF
Flexible Loop (DISEMBL)
mprvkrgvtararhkkvlkqakgyfgrrnsvYRVAKQAVMHAMQyayrdrrnkkrvfRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNqikenltnkaf
Low Complexity Region (SEG)
MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNKAF
Disordered region (IsUnstruct)
****************VLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQI*********
Disordered Region (DISOPRED)
MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT****
Disordered Region (DISEMBL)
**************KKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNKAF
Disordered Region (DISPRO)
*******V*ARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNKAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
A6SY33	119	50S ribosomal protein L20	yes	N/A	0.967	0.991	0.745	2e-47
Q1LP77	118	50S ribosomal protein L20	yes	N/A	0.967	1.0	0.745	6e-47
B3R4J4	118	50S ribosomal protein L20	yes	N/A	0.967	1.0	0.745	6e-47
Q472N5	118	50S ribosomal protein L20	yes	N/A	0.967	1.0	0.745	6e-47
Q0KBZ0	118	50S ribosomal protein L20	yes	N/A	0.967	1.0	0.745	6e-47
A4G616	119	50S ribosomal protein L20	yes	N/A	0.967	0.991	0.737	6e-47
Q8XZ26	118	50S ribosomal protein L20	yes	N/A	0.967	1.0	0.728	1e-46
B2UGJ5	118	50S ribosomal protein L20	yes	N/A	0.967	1.0	0.728	1e-46
Q13WG0	119	50S ribosomal protein L20	yes	N/A	0.934	0.957	0.754	3e-46
B2SZF9	119	50S ribosomal protein L20	yes	N/A	0.934	0.957	0.754	3e-46

>sp|A6SY33|RL20_JANMA 50S ribosomal protein L20 OS=Janthinobacterium sp. (strain Marseille) GN=rplT PE=3 SV=1

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKVL QAKGY GRR+ VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVLDQAKGYRGRRSKVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH +TY+ FMNGLK++SI+LDRK+LA +A+ DK  F++IVNQ+K N+ 
Sbjct: 61  WITRINAASREHGLTYSVFMNGLKRASIELDRKVLADMAVMDKPAFAAIVNQVKANIA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|Q1LP77|RL20_RALME 50S ribosomal protein L20 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplT PE=3 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH MTY+ FMNGLKK+SI+LDRK+L+ +AI DK  F++IVNQ+K  + 
Sbjct: 61  WIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

>sp|B3R4J4|RL20_CUPTR 50S ribosomal protein L20 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplT PE=3 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH MTY+ FMNGLKK+SI+LDRK+L+ +AI DK  F++IVNQ+K  + 
Sbjct: 61  WIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

>sp|Q472N5|RL20_CUPPJ 50S ribosomal protein L20 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=rplT PE=3 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH MTY+ FMNGLKK+SI+LDRK+L+ +AI DK  F++IVNQ+K  + 
Sbjct: 61  WIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

>sp|Q0KBZ0|RL20_CUPNH 50S ribosomal protein L20 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplT PE=3 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH MTY+ FMNGLKK+SI+LDRK+L+ +AI DK  F++IVNQ+K  + 
Sbjct: 61  WIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

>sp|A4G616|RL20_HERAR 50S ribosomal protein L20 OS=Herminiimonas arsenicoxydans GN=rplT PE=3 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKVL QAKGY GRR+ VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVLDQAKGYRGRRSKVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH +TY+ FMNGLK++SI+LDRK+LA +A+ DK  F++IVNQ+K  + 
Sbjct: 61  WITRINAASREHGLTYSVFMNGLKRASIELDRKVLADMAVMDKPAFAAIVNQVKTTIA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Herminiimonas arsenicoxydans (taxid: 204773)

>sp|Q8XZ26|RL20_RALSO 50S ribosomal protein L20 OS=Ralstonia solanacearum (strain GMI1000) GN=rplT PE=3 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINA  REH ++Y+ FMNGLKK+SI+LDRK+L+ +AI DK+ F++IVNQ+K N+ 
Sbjct: 61  WIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVNQVKANVA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|B2UGJ5|RL20_RALPJ 50S ribosomal protein L20 OS=Ralstonia pickettii (strain 12J) GN=rplT PE=3 SV=1

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKG+ GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVISAAKGFRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINA  REH +TY+ FMNGLKK+SI+LDRK+L+ +AI DK+ F++IVNQ+K N+ 
Sbjct: 61  WIARINAGAREHGLTYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVNQVKANVA 118

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Ralstonia pickettii (strain 12J) (taxid: 402626)

>sp|Q13WG0|RL20_BURXL 50S ribosomal protein L20 OS=Burkholderia xenovorans (strain LB400) GN=rplT PE=3 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 103/114 (90%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKK++K AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKIIKLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           WI+RINAAVR+H MTY+ F+NGLKK+SI+LDRK+LA +A+ DK  F++IV Q+K
Sbjct: 61  WITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIVQQVK 114

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

>sp|B2SZF9|RL20_BURPP 50S ribosomal protein L20 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplT PE=3 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 103/114 (90%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKK++K AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKIIKLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           WI+RINAAVR+H MTY+ F+NGLKK+SI+LDRK+LA +A+ DK  F++IV Q+K
Sbjct: 61  WITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIVQQVK 114

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
399020914	119	ribosomal protein L20 [Herbaspirillum sp	0.967	0.991	0.754	5e-47
152980705	119	50S ribosomal protein L20 [Janthinobacte	0.967	0.991	0.745	7e-46
340786693	119	50S ribosomal protein L20 [Collimonas fu	0.967	0.991	0.745	2e-45
241663240	118	50S ribosomal protein L20 [Ralstonia pic	0.967	1.0	0.737	2e-45
73540972	118	50S ribosomal protein L20 [Ralstonia eut	0.967	1.0	0.745	2e-45
134095003	119	50S ribosomal protein L20 [Herminiimonas	0.967	0.991	0.737	3e-45
300311297	120	50S ribosomal protein L20 [Herbaspirillu	0.967	0.983	0.737	3e-45
421745280	118	50S ribosomal protein L20 [Cupriavidus n	0.934	0.966	0.771	3e-45
17546299	118	50S ribosomal protein L20 [Ralstonia sol	0.967	1.0	0.728	5e-45
149926880	118	ribosomal protein L20 [Limnobacter sp. M	0.934	0.966	0.754	6e-45

>gi|399020914|ref|ZP_10723038.1| ribosomal protein L20 [Herbaspirillum sp. CF444] gi|398093880|gb|EJL84254.1| ribosomal protein L20 [Herbaspirillum sp. CF444]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 106/118 (89%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKVL QAKGY GRR++VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVLAQAKGYRGRRSTVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH +TY+ FMNGLK++SI+LDRK+LA +A+TDK  F++IVNQ+K N+ 
Sbjct: 61  WIARINAAAREHGVTYSVFMNGLKRASIELDRKVLADMAVTDKPAFAAIVNQVKANIA 118

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980705|ref|YP_001353180.1| 50S ribosomal protein L20 [Janthinobacterium sp. Marseille] gi|166219653|sp|A6SY33.1|RL20_JANMA RecName: Full=50S ribosomal protein L20 gi|151280782|gb|ABR89192.1| large subunit ribosomal protein L20 [Janthinobacterium sp. Marseille]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKVL QAKGY GRR+ VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVLDQAKGYRGRRSKVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH +TY+ FMNGLK++SI+LDRK+LA +A+ DK  F++IVNQ+K N+ 
Sbjct: 61  WITRINAASREHGLTYSVFMNGLKRASIELDRKVLADMAVMDKPAFAAIVNQVKANIA 118

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340786693|ref|YP_004752158.1| 50S ribosomal protein L20 [Collimonas fungivorans Ter331] gi|340551960|gb|AEK61335.1| LSU ribosomal protein L20p [Collimonas fungivorans Ter331]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKK+L QAKGY GRR+ VYRVAKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKILVQAKGYRGRRSKVYRVAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH +TY+ FMNGLK++SI+LDRK+LA +A+ DK  F++IVNQ+K N+ 
Sbjct: 61  WIARINAASREHGVTYSVFMNGLKRASIELDRKVLADMAVMDKPAFAAIVNQVKANIA 118

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|241663240|ref|YP_002981600.1| 50S ribosomal protein L20 [Ralstonia pickettii 12D] gi|240865267|gb|ACS62928.1| ribosomal protein L20 [Ralstonia pickettii 12D]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVISAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINA  REH +TY+ FMNGLKK+SI+LDRK+L+ +AI DK+ F++IVNQ+K N+ 
Sbjct: 61  WIARINAGAREHGLTYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVNQVKANVA 118

Source: Ralstonia pickettii 12D

Species: Ralstonia pickettii

Genus: Ralstonia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|73540972|ref|YP_295492.1| 50S ribosomal protein L20 [Ralstonia eutropha JMP134] gi|94310108|ref|YP_583318.1| 50S ribosomal protein L20 [Cupriavidus metallidurans CH34] gi|113867360|ref|YP_725849.1| 50S ribosomal protein L20 [Ralstonia eutropha H16] gi|194289386|ref|YP_002005293.1| 50S ribosomal protein l20 [Cupriavidus taiwanensis LMG 19424] gi|339325471|ref|YP_004685164.1| 50S ribosomal protein L20 [Cupriavidus necator N-1] gi|430809509|ref|ZP_19436624.1| 50S ribosomal protein L20 [Cupriavidus sp. HMR-1] gi|109893141|sp|Q472N5.1|RL20_RALEJ RecName: Full=50S ribosomal protein L20 gi|123329355|sp|Q0KBZ0.1|RL20_RALEH RecName: Full=50S ribosomal protein L20 gi|166220732|sp|Q1LP77.1|RL20_RALME RecName: Full=50S ribosomal protein L20 gi|226730383|sp|B3R4J4.1|RL20_CUPTR RecName: Full=50S ribosomal protein L20 gi|72118385|gb|AAZ60648.1| LSU ribosomal protein L20P [Ralstonia eutropha JMP134] gi|93353960|gb|ABF08049.1| 50S ribosomal subunit protein L20 [Cupriavidus metallidurans CH34] gi|113526136|emb|CAJ92481.1| LSU ribosomal protein L20 [Ralstonia eutropha H16] gi|193223221|emb|CAQ69226.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Cupriavidus taiwanensis LMG 19424] gi|338165628|gb|AEI76683.1| 50S ribosomal protein L20 [Cupriavidus necator N-1] gi|429498023|gb|EKZ96539.1| 50S ribosomal protein L20 [Cupriavidus sp. HMR-1]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH MTY+ FMNGLKK+SI+LDRK+L+ +AI DK  F++IVNQ+K  + 
Sbjct: 61  WIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118

Source: Ralstonia eutropha JMP134

Species: Cupriavidus pinatubonensis

Genus: Cupriavidus

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134095003|ref|YP_001100078.1| 50S ribosomal protein L20 [Herminiimonas arsenicoxydans] gi|166219652|sp|A4G616.1|RL20_HERAR RecName: Full=50S ribosomal protein L20 gi|133738906|emb|CAL61953.1| 50S ribosomal subunit protein L20 [Herminiimonas arsenicoxydans]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKVL QAKGY GRR+ VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVLDQAKGYRGRRSKVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA REH +TY+ FMNGLK++SI+LDRK+LA +A+ DK  F++IVNQ+K  + 
Sbjct: 61  WITRINAASREHGLTYSVFMNGLKRASIELDRKVLADMAVMDKPAFAAIVNQVKTTIA 118

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300311297|ref|YP_003775389.1| 50S ribosomal protein L20 [Herbaspirillum seropedicae SmR1] gi|300074082|gb|ADJ63481.1| 50S ribosomal subunit L20 protein [Herbaspirillum seropedicae SmR1]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 103/118 (87%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKVL  AKGY GRR +VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVLALAKGYRGRRKNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA R H +TY+ FMNGLKK++I+LDRK+LA +A+TDK  F++IVNQ+K N+ 
Sbjct: 61  WIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANIA 118

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|421745280|ref|ZP_16183138.1| 50S ribosomal protein L20 [Cupriavidus necator HPC(L)] gi|409776302|gb|EKN57721.1| 50S ribosomal protein L20 [Cupriavidus necator HPC(L)]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 102/114 (89%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           WI+RINAA REH MTY+ FMNGLKK+SI+LDRK+L+ +AI DK  F++IVNQ+K
Sbjct: 61  WIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVK 114

Source: Cupriavidus necator HPC(L)

Species: Cupriavidus sp. HPC(L)

Genus: Cupriavidus

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|17546299|ref|NP_519701.1| 50S ribosomal protein L20 [Ralstonia solanacearum GMI1000] gi|83748300|ref|ZP_00945325.1| LSU ribosomal protein L20P [Ralstonia solanacearum UW551] gi|207742949|ref|YP_002259341.1| 550s ribosomal protein l20 [Ralstonia solanacearum IPO1609] gi|300691318|ref|YP_003752313.1| 50S ribosomal protein L20 [Ralstonia solanacearum PSI07] gi|300703881|ref|YP_003745483.1| 50S ribosomal protein L20 [Ralstonia solanacearum CFBP2957] gi|386333321|ref|YP_006029490.1| 550s ribosomal protein l20 [Ralstonia solanacearum Po82] gi|421887921|ref|ZP_16319049.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Ralstonia solanacearum K60-1] gi|421898057|ref|ZP_16328424.1| 550s ribosomal protein l20 [Ralstonia solanacearum MolK2] gi|20978579|sp|Q8XZ26.1|RL20_RALSO RecName: Full=50S ribosomal protein L20 gi|17428596|emb|CAD15282.1| probable 550s ribosomal protein l20 [Ralstonia solanacearum GMI1000] gi|83725032|gb|EAP72185.1| LSU ribosomal protein L20P [Ralstonia solanacearum UW551] gi|206589263|emb|CAQ36225.1| 550s ribosomal protein l20 [Ralstonia solanacearum MolK2] gi|206594344|emb|CAQ61271.1| 550s ribosomal protein l20 [Ralstonia solanacearum IPO1609] gi|299066589|emb|CBJ37779.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Ralstonia solanacearum CMR15] gi|299071544|emb|CBJ42868.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Ralstonia solanacearum CFBP2957] gi|299078378|emb|CBJ51028.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Ralstonia solanacearum PSI07] gi|334195769|gb|AEG68954.1| 550s ribosomal protein l20 [Ralstonia solanacearum Po82] gi|344167563|emb|CCA79801.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [blood disease bacterium R229] gi|344174553|emb|CCA86351.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Ralstonia syzygii R24] gi|378966730|emb|CCF95797.1| 50S ribosomal subunit protein L20, also posttranslational autoregulator [Ralstonia solanacearum K60-1]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 104/118 (88%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+  AKGY GRRN+VYR+AKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINA  REH ++Y+ FMNGLKK+SI+LDRK+L+ +AI DK+ F++IVNQ+K N+ 
Sbjct: 61  WIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVNQVKANVA 118

Source: Ralstonia solanacearum GMI1000

Species: Ralstonia solanacearum

Genus: Ralstonia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|149926880|ref|ZP_01915139.1| ribosomal protein L20 [Limnobacter sp. MED105] gi|149824432|gb|EDM83650.1| ribosomal protein L20 [Limnobacter sp. MED105]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 103/114 (90%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPRVKRGVTARARHKKV+ QAKG+ GRRN+V+RVAKQAVM A QYAYRDRRNKKRVFR+L
Sbjct: 1   MPRVKRGVTARARHKKVIAQAKGFRGRRNNVFRVAKQAVMRAGQYAYRDRRNKKRVFRAL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           WI+RINAAVREH MTY+ F+NGLKK++I LDRK+LA +A+TDK  F++IV Q++
Sbjct: 61  WITRINAAVREHGMTYSVFINGLKKAAIGLDRKVLADLAVTDKAAFAAIVGQVR 114

Source: Limnobacter sp. MED105

Species: Limnobacter sp. MED105

Genus: Limnobacter

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TIGR_CMR|SO_2302	118	SO_2302 "ribosomal protein L20	0.959	0.991	0.675	4.3e-38
UNIPROTKB|P0A479	117	rplT "50S ribosomal protein L2	0.934	0.974	0.675	8e-37
TIGR_CMR|VC_A0290	117	VC_A0290 "ribosomal protein L2	0.934	0.974	0.675	8e-37
UNIPROTKB|P0A7L3	118	rplT "50S ribosomal subunit pr	0.959	0.991	0.632	3.5e-36
TIGR_CMR|CPS_2906	119	CPS_2906 "ribosomal protein L2	0.959	0.983	0.641	9.2e-36
TIGR_CMR|CBU_1323	119	CBU_1323 "ribosomal protein L2	0.959	0.983	0.615	4e-35
TIGR_CMR|CHY_1576	117	CHY_1576 "ribosomal protein L2	0.959	1.0	0.564	3.2e-33
TIGR_CMR|ECH_0197	124	ECH_0197 "ribosomal protein L2	0.983	0.967	0.603	6.7e-33
TIGR_CMR|BA_4817	118	BA_4817 "ribosomal protein L20	0.959	0.991	0.495	9.1e-29
TIGR_CMR|NSE_0215	117	NSE_0215 "ribosomal protein L2	0.959	1.0	0.529	1.5e-28

TIGR_CMR|SO_2302 SO_2302 "ribosomal protein L20" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/117 (67%), Positives = 98/117 (83%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             MPRVKRGVTARARHKKVLK AKGY+G R+  YRVA QAV  A QYAYRDRR KKR FR L
Sbjct:     1 MPRVKRGVTARARHKKVLKLAKGYYGARSRTYRVAVQAVTKAGQYAYRDRRQKKRQFRQL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI+RINAA R++ ++Y+ F+NGLKK+SI++DRK+LA IA+ DK+VF+++V + KE L
Sbjct:    61 WIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKVVFATLVEKAKEAL 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A479 rplT "50S ribosomal protein L20" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 77/114 (67%), Positives = 95/114 (83%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             MPRVKRGV ARARHKKVLKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR KKR FR L
Sbjct:     1 MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRAKKRQFRQL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
             WI+RINAA R++ ++Y+ F+NGLKK+SI++DRK+LA IA+ DK  F+ +V + K
Sbjct:    61 WIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAK 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_A0290 VC_A0290 "ribosomal protein L20" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 77/114 (67%), Positives = 95/114 (83%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             MPRVKRGV ARARHKKVLKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR KKR FR L
Sbjct:     1 MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRAKKRQFRQL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
             WI+RINAA R++ ++Y+ F+NGLKK+SI++DRK+LA IA+ DK  F+ +V + K
Sbjct:    61 WIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAK 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7L3 rplT "50S ribosomal subunit protein L20" [Escherichia coli K-12 (taxid:83333)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 74/117 (63%), Positives = 97/117 (82%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             M RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR L
Sbjct:     1 MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI+RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L
Sbjct:    61 WIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 117

GO:0022625 "cytosolic large ribosomal subunit" evidence=IMP

GO:0019843 "rRNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

TIGR_CMR|CPS_2906 CPS_2906 "ribosomal protein L20" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 75/117 (64%), Positives = 95/117 (81%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             M RVKRGV ARARHKKVLKQAKGY+G R+ VYRVA QAV  A QYAYRDRR +KR FR L
Sbjct:     1 MARVKRGVQARARHKKVLKQAKGYYGARSRVYRVAYQAVTKAGQYAYRDRRQRKRQFRQL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI+RINAA R++ ++Y+ F+NGLKK+SI++DRK+LA IA+ DK  F+ +V + + +L
Sbjct:    61 WIARINAAARQNGLSYSKFINGLKKASIEIDRKILADIAVYDKAAFTFLVEKAQASL 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CBU_1323 CBU_1323 "ribosomal protein L20" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 72/117 (61%), Positives = 92/117 (78%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             MPRVKRGVTARARHKKVL +AKGY+G R+ V+RVAKQAV+ A QYAYRDR+ +KR FR+L
Sbjct:     1 MPRVKRGVTARARHKKVLTKAKGYYGARSRVFRVAKQAVIKAAQYAYRDRKQRKRQFRAL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI RINAA REH ++Y+  +NGL K+S+ +DRK LA +A+ DK  F  +  + K+ L
Sbjct:    61 WIVRINAAAREHGLSYSRLINGLMKASVAIDRKNLAELAVYDKAAFGKLAEKAKQAL 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CHY_1576 CHY_1576 "ribosomal protein L20" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 66/117 (56%), Positives = 89/117 (76%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             MPR K  V +R RHKK+LK AKGYFG ++ ++RVAKQ VM ++ YAYRDRR +KR FR L
Sbjct:     1 MPRAKSSVVSRKRHKKILKLAKGYFGAKSKLFRVAKQQVMKSLMYAYRDRRARKREFRKL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI+RINAA R H +TY+  MNGLKK+ ++++RK+LA +A+ DK  F+ +V   K+NL
Sbjct:    61 WITRINAAARMHGLTYSRMMNGLKKAGVEINRKMLADLAVNDKNAFAELVEIAKKNL 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|ECH_0197 ECH_0197 "ribosomal protein L20" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 73/121 (60%), Positives = 92/121 (76%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             M RVKRGVT RARHKKV+K AKGY GR  + YR+A Q V  A+QYAYRDRRN+KR FRSL
Sbjct:     1 MARVKRGVTTRARHKKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNK 120
             WI RINAAVR+H + Y+ F++GL  +++ L+RK+LA +A+  K  F  IV+ IKE L NK
Sbjct:    61 WIMRINAAVRQHGLLYSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEAL-NK 119

Query:   121 A 121
             +
Sbjct:   120 S 120

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|BA_4817 BA_4817 "ribosomal protein L20" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 58/117 (49%), Positives = 85/117 (72%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             MPRVK G   R R KKV+K AKGY+G +N++++VA Q VM ++ YA+RDRR KKR FR L
Sbjct:     1 MPRVKGGTVTRQRRKKVIKLAKGYYGSKNTLFKVANQQVMKSLMYAFRDRRQKKRDFRKL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI+RINAA R + ++Y+  M+GLK + I+++RK+LA +A+ D+  F+ +    K N+
Sbjct:    61 WITRINAAARMNGLSYSRLMHGLKNAGIEVNRKMLADLAVHDEKAFAELATVAKNNI 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|NSE_0215 NSE_0215 "ribosomal protein L20" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 62/117 (52%), Positives = 82/117 (70%)

Query:     1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
             M RVKRGV  R RHKKV+KQAKG+ GR  + YR+A + +  + QYAYRDR+ +KR FRSL
Sbjct:     1 MARVKRGVQVRQRHKKVIKQAKGFHGRSKNCYRIALRRLEKSWQYAYRDRKVRKRDFRSL 60

Query:    61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
             WI RINAAVR   + Y+ FM GLK + + ++RK+L+ +AI+    F  IVN+ K  L
Sbjct:    61 WIQRINAAVRSFGLVYSVFMKGLKAAGVDVNRKVLSELAISQPSAFGEIVNKAKAAL 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9MHY1	RL20_ACIET	No assigned EC number	0.6949	0.9672	0.9915	yes	N/A
Q082E4	RL20_SHEFN	No assigned EC number	0.6779	0.9672	0.9915	yes	N/A
B3R4J4	RL20_CUPTR	No assigned EC number	0.7457	0.9672	1.0	yes	N/A
B4E7I8	RL20_BURCJ	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q21YT0	RL20_RHOFD	No assigned EC number	0.6864	0.9672	0.9915	yes	N/A
Q2SVE1	RL20_BURTA	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
B2SZF9	RL20_BURPP	No assigned EC number	0.7543	0.9344	0.9579	yes	N/A
A1V3R0	RL20_BURMS	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q62KI5	RL20_BURMA	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A4JDU7	RL20_BURVG	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A3NUI7	RL20_BURP0	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q5P7X8	RL20_AROAE	No assigned EC number	0.6694	0.9672	0.9915	yes	N/A
Q2KZL8	RL20_BORA1	No assigned EC number	0.6779	0.9672	0.9915	yes	N/A
Q1BWV0	RL20_BURCA	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A3N8T4	RL20_BURP6	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q1LP77	RL20_RALME	No assigned EC number	0.7457	0.9672	1.0	yes	N/A
Q7W7C8	RL20_BORPA	No assigned EC number	0.6864	0.9672	0.9915	yes	N/A
A1W8I3	RL20_ACISJ	No assigned EC number	0.6949	0.9672	0.9915	yes	N/A
A9ABF6	RL20_BURM1	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A4G616	RL20_HERAR	No assigned EC number	0.7372	0.9672	0.9915	yes	N/A
A1S6G7	RL20_SHEAM	No assigned EC number	0.6694	0.9672	0.9915	yes	N/A
A1K4E4	RL20_AZOSB	No assigned EC number	0.6694	0.9672	0.9915	yes	N/A
A0K6V3	RL20_BURCH	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q0KBZ0	RL20_CUPNH	No assigned EC number	0.7457	0.9672	1.0	yes	N/A
A2S2N4	RL20_BURM9	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q7VVR3	RL20_BORPE	No assigned EC number	0.6864	0.9672	0.9915	yes	N/A
Q5E5I3	RL20_VIBF1	No assigned EC number	0.6923	0.9590	1.0	yes	N/A
Q0ADN7	RL20_NITEC	No assigned EC number	0.7226	0.9754	1.0	yes	N/A
B2JJJ4	RL20_BURP8	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A3QEJ7	RL20_SHELP	No assigned EC number	0.6779	0.9672	0.9915	yes	N/A
Q8XZ26	RL20_RALSO	No assigned EC number	0.7288	0.9672	1.0	yes	N/A
A6SY33	RL20_JANMA	No assigned EC number	0.7457	0.9672	0.9915	yes	N/A
A9IPU1	RL20_BORPD	No assigned EC number	0.6949	0.9672	0.9915	yes	N/A
A1TR36	RL20_ACIAC	No assigned EC number	0.6779	0.9672	0.9833	yes	N/A
B5FDV4	RL20_VIBFM	No assigned EC number	0.6923	0.9590	1.0	yes	N/A
Q39H52	RL20_BURS3	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q82VV4	RL20_NITEU	No assigned EC number	0.6890	0.9754	1.0	yes	N/A
Q7WKR6	RL20_BORBR	No assigned EC number	0.6864	0.9672	0.9915	yes	N/A
Q472N5	RL20_CUPPJ	No assigned EC number	0.7457	0.9672	1.0	yes	N/A
B1YP16	RL20_BURA4	No assigned EC number	0.7543	0.9344	0.9579	yes	N/A
B2UGJ5	RL20_RALPJ	No assigned EC number	0.7288	0.9672	1.0	yes	N/A
Q13WG0	RL20_BURXL	No assigned EC number	0.7543	0.9344	0.9579	yes	N/A
A8FV59	RL20_SHESH	No assigned EC number	0.6779	0.9672	0.9915	yes	N/A
A3MJU1	RL20_BURM7	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
Q0BG03	RL20_BURCM	No assigned EC number	0.7543	0.9344	0.9579	yes	N/A
Q63TM5	RL20_BURPS	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
B1K094	RL20_BURCC	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A1WMG8	RL20_VEREI	No assigned EC number	0.6864	0.9672	0.9915	yes	N/A
Q3JT10	RL20_BURP1	No assigned EC number	0.7456	0.9344	0.9579	yes	N/A
A9C3D1	RL20_DELAS	No assigned EC number	0.6949	0.9672	0.9915	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
PRK05185	114	PRK05185, rplT, 50S ribosomal protein L20; Provisi	9e-63
COG0292	118	COG0292, RplT, Ribosomal protein L20 [Translation,	2e-57
pfam00453	108	pfam00453, Ribosomal_L20, Ribosomal protein L20	5e-53
cd07026	106	cd07026, Ribosomal_L20, Ribosomal protein L20	8e-50
TIGR01032	113	TIGR01032, rplT_bact, ribosomal protein L20	4e-46
CHL00068	115	CHL00068, rpl20, ribosomal protein L20	1e-40
PTZ00030	121	PTZ00030, PTZ00030, 60S ribosomal protein L20; Pro	8e-31
PRK14537	230	PRK14537, PRK14537, 50S ribosomal protein L20/unkn	2e-27

>gnl|CDD|179959 PRK05185, rplT, 50S ribosomal protein L20; Provisional

 Score =  186 bits (475), Expect = 9e-63
 Identities = 70/114 (61%), Positives = 91/114 (79%)

Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
            RVKRGV ARAR KK+LK AKGY G R+ +YRVAKQAVM A+QYAYRDRR KKR FR LW
Sbjct: 1   ARVKRGVVARARRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQKKRDFRKLW 60

Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKE 115
           I+RINAA R++ ++Y+ F+NGLKK+ I++DRK+LA +A+ D   F+++V + K 
Sbjct: 61  IARINAAARQNGLSYSRFINGLKKAGIEIDRKVLADLAVNDPAAFAALVEKAKA 114

Length = 114

>gnl|CDD|223369 COG0292, RplT, Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

 Score =  173 bits (441), Expect = 2e-57
 Identities = 73/117 (62%), Positives = 93/117 (79%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           M RVKRGV ARAR KK+LK AKGY G R+ +YRVAKQAVM A+QYAYRDRR +KR FR L
Sbjct: 1   MARVKRGVVARARRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           WI+RINAA RE+ ++Y+ F+NGLKK+ I++DRK+LA +AI D   F+++V + K  L
Sbjct: 61  WIARINAAARENGLSYSRFINGLKKAGIEIDRKVLADLAINDPAAFAALVEKAKAAL 117

Length = 118

>gnl|CDD|201238 pfam00453, Ribosomal_L20, Ribosomal protein L20

 Score =  161 bits (410), Expect = 5e-53
 Identities = 65/108 (60%), Positives = 85/108 (78%)

Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
            RVKRGV AR R KK+LK AKG+ G R+ ++R AKQ VM A+QYAYRDR+ KKR FR LW
Sbjct: 1   TRVKRGVVARKRRKKILKLAKGFRGARSKLFRTAKQQVMKALQYAYRDRKKKKRDFRRLW 60

Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSI 109
           I+RINAA REH ++Y+ F+NGLKK++I+L+RK+LA +AI D   F ++
Sbjct: 61  ITRINAAAREHGLSYSRFINGLKKANIELNRKVLAQLAINDPEAFKAL 108

Length = 108

>gnl|CDD|197305 cd07026, Ribosomal_L20, Ribosomal protein L20

 Score =  153 bits (389), Expect = 8e-50
 Identities = 63/106 (59%), Positives = 83/106 (78%)

Query: 6   RGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRI 65
           RGV AR R KK+LK AKG+ GRR+ ++R AKQAVM A+ YAYRDR+ KKR FR LWI+RI
Sbjct: 1   RGVVARKRRKKILKLAKGFRGRRSRLFRTAKQAVMKALAYAYRDRKQKKRDFRRLWITRI 60

Query: 66  NAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVN 111
           NAA REH ++Y+ F++GLKK++I L+RK+LA +AI D   F ++V 
Sbjct: 61  NAAAREHGLSYSRFIHGLKKANILLNRKVLAQLAILDPKAFKALVE 106

The ribosomal protein family L20 contains members from eubacteria, as well as their mitochondrial and plastid homologs. L20 is an assembly protein, required for the first in-vitro reconstitution step of the 50S ribosomal subunit, but does not seem to be essential for ribosome activity. L20 has been shown to partially unfold in the absence of RNA, in regions corresponding to the RNA-binding sites. L20 represses the translation of its own mRNA via specific binding to two distinct mRNA sites, in a manner similar to the L20 interaction with 23S ribosomal RNA. . Length = 106

>gnl|CDD|130104 TIGR01032, rplT_bact, ribosomal protein L20

 Score =  144 bits (365), Expect = 4e-46
 Identities = 68/112 (60%), Positives = 87/112 (77%)

Query: 3   RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWI 62
           RVKRGV AR R KK+LKQAKG+ G R   YRVAKQ V+ AM YAYRDRR +KR FRSLWI
Sbjct: 2   RVKRGVVARRRRKKILKQAKGFRGTRKRHYRVAKQTVIKAMAYAYRDRRQRKRDFRSLWI 61

Query: 63  SRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           +RINAA R+H ++Y+ F+NGLKK++I+++RK+L+ +AI D   F  IV + K
Sbjct: 62  TRINAAARQHGLSYSRFINGLKKANIEINRKVLSELAINDPEAFKEIVEKAK 113

This model describes bacterial ribosomal protein L20 and its chloroplast equvalent. This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly (SS 5/09/03) [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|214352 CHL00068, rpl20, ribosomal protein L20

 Score =  130 bits (330), Expect = 1e-40
 Identities = 58/114 (50%), Positives = 79/114 (69%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           M RVKRG  AR R KK+LK A G+ G  + ++R A Q  M A+  +YRDR+ KKR FR L
Sbjct: 1   MTRVKRGYIARKRRKKILKFASGFRGAHSRLFRTANQQKMKALVSSYRDRKKKKRDFRRL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           WI+RINAA+RE+ ++Y+ F++ L K+ I L+RK+LA IAI D   F +I N+I 
Sbjct: 61  WITRINAAIRENGVSYSKFIHNLYKNQILLNRKILAQIAILDPNCFYTISNKII 114

Length = 115

>gnl|CDD|185406 PTZ00030, PTZ00030, 60S ribosomal protein L20; Provisional

 Score =  105 bits (265), Expect = 8e-31
 Identities = 49/105 (46%), Positives = 72/105 (68%)

Query: 10  ARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAV 69
            +    KV K AKG+ GR  + +++A+  VM A+ Y+Y  RR +KR+ R  WI  INAA 
Sbjct: 1   MKIPRDKVFKLAKGFRGRSKNCFKLARNRVMKALLYSYISRRKRKRILRVHWIQTINAAT 60

Query: 70  REHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           REH MTY+ F+NGL  S+IQL+RK+LA++AIT+   F ++V++ K
Sbjct: 61  REHNMTYSRFINGLNNSNIQLNRKILANLAITEPFSFKALVDESK 105

Length = 121

>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion protein; Provisional

 Score =  100 bits (251), Expect = 2e-27
 Identities = 48/108 (44%), Positives = 70/108 (64%)

Query: 13  RHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREH 72
           R KKVLK AKGYFG ++++Y+ A + VM ++QYAYRDR+ +KR FR LWISRINA     
Sbjct: 13  RRKKVLKMAKGYFGSKSTLYKTAHEQVMRSLQYAYRDRKQRKRDFRKLWISRINAGAMLC 72

Query: 73  KMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNK 120
            + Y+  M+GL  + + ++RK+L+ +A     VF   V   K+ L+  
Sbjct: 73  GIKYSRLMHGLALAKVDINRKVLSDLAHLQPEVFVQYVELAKKFLSQF 120

Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
COG0292	118	RplT Ribosomal protein L20 [Translation, ribosomal	100.0
CHL00068	115	rpl20 ribosomal protein L20	100.0
TIGR01032	113	rplT_bact ribosomal protein L20. This protein bind	100.0
PRK05185	114	rplT 50S ribosomal protein L20; Provisional	100.0
PRK14537	230	50S ribosomal protein L20/unknown domain fusion pr	100.0
PF00453	108	Ribosomal_L20: Ribosomal protein L20; InterPro: IP	100.0
PTZ00030	121	60S ribosomal protein L20; Provisional	100.0
KOG4707|consensus	147		100.0

>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-62  Score=356.96  Aligned_cols=118  Identities=62%  Similarity=0.991  Sum_probs=116.6

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM   80 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (122)
                      |||||+|+++++|||||||+||||+|+++++|++|+|+|++|++|||+||+++|||||+|||+|||||+|++|+|||+||
T Consensus         1 M~RvK~gv~~r~RrKkiLK~AKG~~G~r~~~~r~Akq~v~ka~~yaYrdRr~rKRdFR~LWI~RINAA~R~~GlsYS~fi   80 (118)
T COG0292           1 MARVKRGVVARARRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKLWIARINAAARENGLSYSRFI   80 (118)
T ss_pred             CCcccccHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      +||+++||+|||||||||||+||.+|.+||+.++.+++
T Consensus        81 ~gLkkA~I~inRKvLadlAi~d~~aF~~lv~~aK~al~  118 (118)
T COG0292          81 NGLKKAGIEIDRKVLADLAINDPAAFAALVEKAKAALA  118 (118)
T ss_pred             HHHHHcCchhhHHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998874

>CHL00068 rpl20 ribosomal protein L20

Probab=100.00  E-value=1.1e-59  Score=342.65  Aligned_cols=114  Identities=51%  Similarity=0.797  Sum_probs=112.6

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM   80 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (122)
                      |||||+|+++++||++||++|+||+|++++||++|+|+|+|||+|||+||++|||+||+|||+|||||+|++|+|||+||
T Consensus         1 M~Rvk~g~~~r~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (115)
T CHL00068          1 MTRVKRGYIARKRRKKILKFASGFRGAHSRLFRTANQQKMKALVSSYRDRKKKKRDFRRLWITRINAAIRENGVSYSKFI   80 (115)
T ss_pred             CCCccccHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHH
Q psy9578          81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK  114 (122)
Q Consensus        81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k  114 (122)
                      +||+++||+|||||||||||+||.+|.+||+.+.
T Consensus        81 ~gL~~~~i~LnRKvLa~LAi~dp~~F~~lv~~~~  114 (115)
T CHL00068         81 HNLYKNQILLNRKILAQIAILDPNCFYTISNKII  114 (115)
T ss_pred             HHHHHcCCCccHHHHHHHHhcCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999763

>TIGR01032 rplT_bact ribosomal protein L20

Probab=100.00  E-value=4.9e-59  Score=338.25  Aligned_cols=113  Identities=60%  Similarity=0.960  Sum_probs=111.5

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      ||||+|+++++||++||++|+||+|++|+||++|+|+|+|||+|||+||++|||+||+|||+|||||+|++|+|||+||+
T Consensus         1 ~Rvkrg~~~r~rrkkilk~akGf~G~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~   80 (113)
T TIGR01032         1 MRVKGGVVARRRRKKILKQAKGFRGTRKRHYRVAKQTVIKAMAYAYRDRRQRKRDFRSLWITRINAAARQHGLSYSRFIN   80 (113)
T ss_pred             CCCcccHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHHHHHHH
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK  114 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k  114 (122)
                      +|+++||+|||||||||||+||.+|.+||+.++
T Consensus        81 ~L~~~~i~LnRKvLa~lAi~dp~~F~~lv~~~k  113 (113)
T TIGR01032        81 GLKKANIEINRKVLSELAINDPEAFAEIVEQAK  113 (113)
T ss_pred             HHHHcCCCccHHHHHHHHhcCHHHHHHHHHHhC
Confidence            999999999999999999999999999999874

This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. GO process changed accordingly

>PRK05185 rplT 50S ribosomal protein L20; Provisional

Probab=100.00  E-value=1.5e-58  Score=336.12  Aligned_cols=113  Identities=62%  Similarity=1.002  Sum_probs=111.9

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      ||||+|+++++||++||++|+||+|++++||++|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||+
T Consensus         1 ~Rvk~g~~~r~rrkkilk~akGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~   80 (114)
T PRK05185          1 ARVKRGVVARARRKKILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQKKRDFRKLWIARINAAARQNGLSYSRFIN   80 (114)
T ss_pred             CCCcccHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHHHHHHH
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK  114 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k  114 (122)
                      +|+++||+|||||||||||+||.+|.+||+.++
T Consensus        81 ~L~~~~i~LNRK~La~lAi~dp~~F~~lv~~~k  113 (114)
T PRK05185         81 GLKKAGIEIDRKVLADLAVNDPAAFAALVEKAK  113 (114)
T ss_pred             HHHHhCCCccHHHHHHHHhcCHHHHHHHHHHHh
Confidence            999999999999999999999999999999886

>PRK14537 50S ribosomal protein L20/unknown domain fusion protein; Provisional

Probab=100.00  E-value=3.4e-57  Score=359.42  Aligned_cols=118  Identities=42%  Similarity=0.715  Sum_probs=116.3

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM   80 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (122)
                      ||||++|+++++||++||++|+||+|++|+|||+|+|+|+|||+|||+||++|||+||+|||+|||||+|++|+|||.||
T Consensus         1 M~RvkrG~~arkRRKKILKlAKGfrGrrs~lyR~A~q~V~KAL~YAYrdRK~KKRdFR~LWItRINAAaR~~GlsYS~fI   80 (230)
T PRK14537          1 MAKISFTPARHRRRKKVLKMAKGYFGSKSTLYKTAHEQVMRSLQYAYRDRKQRKRDFRKLWISRINAGAMLCGIKYSRLM   80 (230)
T ss_pred             CCCcccchHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      +||+++||.|||||||||||+||.+|.+||+.++.+++
T Consensus        81 ~gLkka~I~LNRKvLAdLAI~Dp~sF~~Lv~~ak~al~  118 (230)
T PRK14537         81 HGLALAKVDINRKVLSDLAHLQPEVFVQYVELAKKFLS  118 (230)
T ss_pred             HHHHHcCCCccHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998764

>PF00453 Ribosomal_L20: Ribosomal protein L20; InterPro: IPR005813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8.1e-57  Score=324.30  Aligned_cols=108  Identities=63%  Similarity=1.002  Sum_probs=104.4

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      ||||+|+++++||++||++|+||+|++++||++|+|+|+|||+|||+||++|||+||+|||+|||||+|++|+|||.||+
T Consensus         1 ~Rvk~g~~~~~rrkkilk~akGf~G~~~~~~r~a~q~v~kal~yay~~Rk~kKR~fR~lWI~RINAa~r~~g~~Ys~fi~   80 (108)
T PF00453_consen    1 MRVKRGVVARKRRKKILKLAKGFRGRRSNCYRIAKQQVMKALQYAYRDRKLKKRDFRRLWITRINAAAREHGLSYSRFIN   80 (108)
T ss_dssp             --S-STTHHHHHHHHHHHHTTTSSGGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHH
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSI  109 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~l  109 (122)
                      +|+++||+|||||||||||+||++|++|
T Consensus        81 ~L~~~~i~LNRKiLa~LAi~dp~~F~~L  108 (108)
T PF00453_consen   81 GLKKANIELNRKILADLAINDPESFKSL  108 (108)
T ss_dssp             HHHHCTSSTSCTTGGGHHTSSHHHHHHH
T ss_pred             HHHHhCCcCcHHHHHHHHhcCHHHHhhC
Confidence            9999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L20 is a protein from the large (50S) subunit; in Escherichia coli it is known to bind directly to the 23S rRNA, and is required for ribosome assembly, but does not take part in protein synthesis. It belongs to a family of ribosomal proteins, including L20 from eubacteria, plant and alga chloroplasts and cyanelles [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_S 3CF5_N 3PIO_N 3PIP_N 2ZJQ_N 2ZJR_N 2ZJP_N 3DLL_N 3KIT_U 2X9U_U ....

>PTZ00030 60S ribosomal protein L20; Provisional

Probab=100.00  E-value=4.4e-55  Score=320.76  Aligned_cols=110  Identities=45%  Similarity=0.817  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHCCccc
Q psy9578          11 RARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLKKSSIQL   90 (122)
Q Consensus        11 ~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~~L~k~~i~L   90 (122)
                      ++||++||++|+||+|++++||++|+|+|+|||+|||+||++|||+||+|||+|||||+|+||+|||.||++|+++||.|
T Consensus         2 ~~rrkkilk~AkGf~G~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~~Ys~fi~~L~k~~i~L   81 (121)
T PTZ00030          2 KIPRDKVFKLAKGFRGRSKNCFKLARNRVMKALLYSYISRRKRKRILRVHWIQTINAATREHNMTYSRFINGLNNSNIQL   81 (121)
T ss_pred             cchHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHhhChHHHHHHHHHHHHHhccc
Q psy9578          91 DRKLLASIAITDKLVFSSIVNQIKENLTNK  120 (122)
Q Consensus        91 NRKiLa~lAi~dp~~F~~lv~~~k~~~~~~  120 (122)
                      ||||||||||+||.+|.+||+.++.+++.+
T Consensus        82 NRK~Ls~LAi~dp~sF~~lv~~~k~~l~~~  111 (121)
T PTZ00030         82 NRKILANLAITEPFSFKALVDESKYQLNER  111 (121)
T ss_pred             cHHHHHHHHhcCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999887654

>KOG4707|consensus

Probab=100.00  E-value=6.8e-40  Score=245.92  Aligned_cols=117  Identities=38%  Similarity=0.608  Sum_probs=114.1

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM   80 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (122)
                      |.++++|++.+.|+++|+++|+||||++++|||.|.++|+|||+|+++||.+||+|||.|||+||||++++||+.||.|+
T Consensus         8 l~~~~r~~d~~~rr~~l~k~Aa~frgr~~~~~r~A~r~v~rAlvy~~k~R~~kK~~mr~lwieRv~A~~~e~gv~y~~F~   87 (147)
T KOG4707|consen    8 LWLRNRGPDRYMRRQELFKFAAHFRGRKRRCYRLAVRTVIRALVYATKDRYLKKRDMRTLWIERVNAGAAEHGVRYSPFK   87 (147)
T ss_pred             ceeeccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHh
Q psy9578          81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL  117 (122)
Q Consensus        81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~  117 (122)
                      ++|.+++|.||+|+||||||.||.||.+||+.+++..
T Consensus        88 ~~L~k~~ilLn~k~Lsqlai~eP~sf~~lv~~~k~r~  124 (147)
T KOG4707|consen   88 HGLHKSPILLNRKVLSQLAIVEPRSFCALVVLSKERH  124 (147)
T ss_pred             CCccccccchhHHHhhhhhhhCchhhhhHhhccHhhC
Confidence            9999999999999999999999999999999988743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
1vs6_Q	118	Crystal Structure Of The Bacterial Ribosome From Es		1e-33
1p85_O	117	Real Space Refined Coordinates Of The 50s Subunit F		5e-33
2gya_O	115	Structure Of The 50s Subunit Of A Pre-Translocation		1e-32
1nkw_O	118	Crystal Structure Of The Large Ribosomal Subunit Fr		8e-31
1pnu_O	117	Crystal Structure Of A Streptomycin Dependent Ribos		4e-30
2ghj_A	118	Crystal Structure Of Folded And Partially Unfolded		2e-26
2j01_U	118	Structure Of The Thermus Thermophilus 70s Ribosome		2e-24
3fin_U	117	T. Thermophilus 70s Ribosome In Complex With Mrna,		9e-24
3mrz_Q	116	Recognition Of The Amber Stop Codon By Release Fact		4e-22
1gyz_A	60	Bacterial Ribosomal Protein L20 From Aquifex Aeolic		8e-15
2ftc_L	118	Structural Model For The Large Subunit Of The Mamma		5e-14
3bbo_S	119	Homology Model For The Spinach Chloroplast 50s Subu		1e-13

>pdb|1VS6|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 118

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 97/118 (82%)
Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           M RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR L
Sbjct: 1   MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQL 60
Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           WI+RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L 
Sbjct: 61  WIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 118

>pdb|1P85|O Chain O, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 117

Iteration: 1
 Score =  135 bits (340), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 96/117 (82%)
Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
            RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR LW
Sbjct: 1   ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLW 60
Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118
           I+RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L 
Sbjct: 61  IARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 117

>pdb|2GYA|O Chain O, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 115

Iteration: 1
 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 96/115 (83%)
Query: 3   RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWI 62
           RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR LWI
Sbjct: 1   RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWI 60
Query: 63  SRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           +RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L
Sbjct: 61  ARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 115

>pdb|1NKW|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 118

Iteration: 1
 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 81/111 (72%)
Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPR K G+  R RHKKVLK+AKG++G R+  YR A Q +++A  Y YRDRRNKKR FR L
Sbjct: 1   MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRL 60
Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVN 111
           WI RINA  R H M Y+TF+NGLK+++I L+RK+LA IA  +   F ++V+
Sbjct: 61  WIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVD 111

>pdb|1PNU|O Chain O, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 117

Iteration: 1
 Score =  126 bits (316), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 80/110 (72%)
Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K G+  R RHKKVLK+AKG++G R+  YR A Q +++A  Y YRDRRNKKR FR LW
Sbjct: 1   PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLW 60
Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVN 111
           I RINA  R H M Y+TF+NGLK+++I L+RK+LA IA  +   F ++V+
Sbjct: 61  IQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVD 110

>pdb|2GHJ|A Chain A, Crystal Structure Of Folded And Partially Unfolded Forms Of Aquifex Aeolicus Ribosomal Protein L20 Length = 118

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 3   RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWI 62
           RVK G ++R + KK+LK AKGY G+R+  YR AK+AV  A+ Y YRDR+ +KR FR LWI
Sbjct: 2   RVK-GPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVXRALYYQYRDRKLRKREFRRLWI 60
Query: 63  SRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           +RINAAVR + + Y+TF+NGLKK+ I+LDRK+LA  A+ D   F  +VN++KE L
Sbjct: 61  ARINAAVRAYGLNYSTFINGLKKAGIELDRKILADXAVRDPQAFEQVVNKVKEAL 115

>pdb|2J01|U Chain U, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 118

Iteration: 1
 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPR K GV  R +HKK+LK AKGY+G R+  +R A++ +  A  YAY  R+ +KR FR L
Sbjct: 1   MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRL 60
Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           WI RINAA R+H + Y+TF++GLKK+ I++DRK LA +A+ +  VF+ +V + K
Sbjct: 61  WIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAK 114

>pdb|3FIN|U Chain U, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117

Iteration: 1
 Score =  104 bits (260), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 80/113 (70%)
Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K GV  R +HKK+LK AKGY+G R+  +R A++ +  A  YAY  R+ +KR FR LW
Sbjct: 1   PRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLW 60
Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           I RINAA R+H + Y+TF++GLKK+ I++DRK LA +A+ +  VF+ +V + K
Sbjct: 61  IVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAK 113

>pdb|3MRZ|Q Chain Q, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 116

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K GV  R +HKK+LK AKGY+G R S  R A++ +  A  YAY  R+ +KR FR LW
Sbjct: 1   PRAKTGVVRRRKHKKILKLAKGYWGLR-SKSRKARETLFAAGNYAYAHRKRRKRDFRRLW 59
Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIK 114
           I RINAA R+H + Y+TF++GLKK+ I++DRK LA +A+ +  VF+ +V + K
Sbjct: 60  IVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAK 112

>pdb|1GYZ|A Chain A, Bacterial Ribosomal Protein L20 From Aquifex Aeolicus Length = 60

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 45/57 (78%)
Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           WI+RINAAVR + + Y+TF+NGLKK+ I+LDRK+LA +A+ D   F  +VN++KE L
Sbjct: 1   WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEAL 57

>pdb|2FTC|L Chain L, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 118

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 60/97 (61%)
Query: 13  RHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREH 72
           R ++VLK A+ + GR+N  YR+A + V+ A     + R  KK+  R+LWI+RI AA +EH
Sbjct: 13  RIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEH 72
Query: 73  KMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSI 109
            + Y   +  L K  ++L+RK+LA +AI +   F S+
Sbjct: 73  GLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSL 109

>pdb|3BBO|S Chain S, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           M RVKRG  AR R KK+   A  + G  + + R   Q  + A+  A+RDR  +KR FR L
Sbjct: 1   MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRL 60
Query: 61  WISRINAAVREHKMTYN--TFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQI 113
           WI+RINAA+RE  + YN   F++ L K  + L+RK+LA IAI +      I N+I
Sbjct: 61  WITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEI 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3v2d_U	118	50S ribosomal protein L20; ribosome associated inh	5e-62
2zjr_N	118	50S ribosomal protein L20; ribosome, large ribosom	7e-62
3r8s_Q	117	50S ribosomal protein L20; protein biosynthesis, R	1e-59
3bbo_S	119	Ribosomal protein L20; large ribosomal subunit, sp	2e-58
2ghj_A	118	50S ribosomal protein L20; folding intermediate, r	1e-57
2ftc_L	118	MRPL20 protein; mitochondrial ribosome, large ribo	3e-56

>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ... Length = 118

 Score =  184 bits (469), Expect = 5e-62
 Identities = 57/117 (48%), Positives = 81/117 (69%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPR K GV  R +HKK+LK AKGY+G R+  +R A++ +  A  YAY  R+ +KR FR L
Sbjct: 1   MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           WI RINAA R+H + Y+TF++GLKK+ I++DRK LA +A+ +  VF+ +V + K   
Sbjct: 61  WIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 117

>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ... Length = 118

 Score =  183 bits (468), Expect = 7e-62
 Identities = 62/117 (52%), Positives = 82/117 (70%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           MPR K G+  R RHKKVLK+AKG++G R+  YR A Q +++A  Y YRDRRNKKR FR L
Sbjct: 1   MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRL 60

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           WI RINA  R H M Y+TF+NGLK+++I L+RK+LA IA  +   F ++V+  +   
Sbjct: 61  WIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR 117

>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ... Length = 117

 Score =  178 bits (454), Expect = 1e-59
 Identities = 73/115 (63%), Positives = 96/115 (83%)

Query: 3   RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWI 62
           RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR LWI
Sbjct: 2   RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWI 61

Query: 63  SRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           +RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L
Sbjct: 62  ARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 116

>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 119

 Score =  175 bits (445), Expect = 2e-58
 Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 1   MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSL 60
           M RVKRG  AR R KK+   A  + G  + + R   Q  + A+  A+RDR  +KR FR L
Sbjct: 1   MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRL 60

Query: 61  WISRINAAVREHKM--TYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKE 115
           WI+RINAA+RE  +   Y+ F++ L K  + L+RK+LA IAI +      I N+I +
Sbjct: 61  WITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIK 117

>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A Length = 118

 Score =  173 bits (440), Expect = 1e-57
 Identities = 62/115 (53%), Positives = 87/115 (75%)

Query: 6   RGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRI 65
           +G ++R + KK+LK AKGY G+R+  YR AK+AVM A+ Y YRDR+ +KR FR LWI+RI
Sbjct: 4   KGPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARI 63

Query: 66  NAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNK 120
           NAAVR + + Y+TF+NGLKK+ I+LDRK+LA +A+ D   F  +VN++KE L  +
Sbjct: 64  NAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQVQ 118

>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 118

 Score =  169 bits (431), Expect = 3e-56
 Identities = 39/112 (34%), Positives = 61/112 (54%)

Query: 6   RGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRI 65
           R      R ++VLK A+ + GR+N  YR+A + V+ A     + R  KK+  R+LWI+RI
Sbjct: 6   RVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRI 65

Query: 66  NAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
            AA +EH + Y   +  L K  ++L+RK+LA +AI +   F S+        
Sbjct: 66  TAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRRR 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3v2d_U	118	50S ribosomal protein L20; ribosome associated inh	100.0
2zjr_N	118	50S ribosomal protein L20; ribosome, large ribosom	100.0
3r8s_Q	117	50S ribosomal protein L20; protein biosynthesis, R	100.0
3bbo_S	119	Ribosomal protein L20; large ribosomal subunit, sp	100.0
2ghj_A	118	50S ribosomal protein L20; folding intermediate, r	100.0
2ftc_L	118	MRPL20 protein; mitochondrial ribosome, large ribo	100.0

>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...

Probab=100.00  E-value=1.3e-63  Score=363.41  Aligned_cols=118  Identities=48%  Similarity=0.841  Sum_probs=115.1

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM   80 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (122)
                      |||||+|+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||
T Consensus         1 M~Rvkrg~~ar~Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi   80 (118)
T 3v2d_U            1 MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFI   80 (118)
T ss_dssp             -CCCCCTTHHHHHHHHHHHHTTTCSGGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      +||+++||+|||||||||||+||++|.+||+.++++++
T Consensus        81 ~gL~k~~i~LNRK~La~lAi~dp~~F~~lv~~ak~~~~  118 (118)
T 3v2d_U           81 HGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQG  118 (118)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHCHHHHHHHHHHHHHTC-
T ss_pred             HHHHHcCCCCcHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998763

>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...

Probab=100.00  E-value=9.5e-63  Score=358.94  Aligned_cols=116  Identities=53%  Similarity=0.903  Sum_probs=113.5

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM   80 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi   80 (122)
                      |||||+|+++++||+|||++|+||+|++|+||++|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||
T Consensus         1 M~Rvkrg~~ar~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYS~fi   80 (118)
T 2zjr_N            1 MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFI   80 (118)
T ss_dssp             -CCCCCTTHHHHHHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHH
Q psy9578          81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKEN  116 (122)
Q Consensus        81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~  116 (122)
                      +||+++||+|||||||||||+||++|.+||+.++.+
T Consensus        81 ~gL~k~~I~LNRKvLA~lAi~dp~~F~~lv~~ak~~  116 (118)
T 2zjr_N           81 NGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA  116 (118)
T ss_dssp             HHHHHCTTCCCCSSHHHHHHHCHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCccHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998864

>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...

Probab=100.00  E-value=4.6e-62  Score=354.90  Aligned_cols=117  Identities=62%  Similarity=1.017  Sum_probs=115.4

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      ||||+|+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||+
T Consensus         1 ~Rvkrg~~ar~Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~   80 (117)
T 3r8s_Q            1 ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFIN   80 (117)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTTCCTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHhccccCcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      ||+++||+|||||||||||+||++|.+||++++++++
T Consensus        81 ~L~k~~i~LNRK~La~lAi~dp~~F~~lv~~ak~~~~  117 (117)
T 3r8s_Q           81 GLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA  117 (117)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCCcHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998874

>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.2e-61  Score=353.52  Aligned_cols=116  Identities=42%  Similarity=0.613  Sum_probs=114.6

Q ss_pred             CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC--cHHH
Q psy9578           1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKM--TYNT   78 (122)
Q Consensus         1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl--sYs~   78 (122)
                      |||||+|+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+  |||.
T Consensus         1 M~Rvkrg~~ar~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl~~sYs~   80 (119)
T 3bbo_S            1 MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSK   80 (119)
T ss_dssp             CCCSCCTTHHHHHHHHHHHHCSSCSSSTTSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHH
Q psy9578          79 FMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKEN  116 (122)
Q Consensus        79 fi~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~  116 (122)
                      ||+||+++||+|||||||||||+||.+|.+||+++++.
T Consensus        81 fi~~L~k~~I~LNRKvLa~lAi~dp~~F~~l~~~~k~~  118 (119)
T 3bbo_S           81 FIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIKK  118 (119)
T ss_dssp             HHHHHHHHTCCCSCSSGGGGTTSCTTTTTHHHHHHHHH
T ss_pred             HHHHHHHhCCCccHHHHHHHHHhCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999874

>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A

Probab=100.00  E-value=3.4e-61  Score=350.74  Aligned_cols=116  Identities=56%  Similarity=0.909  Sum_probs=97.7

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      |||| |+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|+||+|||.||+
T Consensus         1 ~Rvk-g~~ar~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYS~fi~   79 (118)
T 2ghj_A            1 MRVK-GPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFIN   79 (118)
T ss_dssp             ------------------CCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             CCCC-cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            7999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      ||+++||+|||||||||||+||++|.+||+.++.+++
T Consensus        80 gL~k~~I~LNRKvLA~lAi~dp~~F~~lv~~ak~~l~  116 (118)
T 2ghj_A           80 GLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQ  116 (118)
T ss_dssp             HHTTTTCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCccHHHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998873

>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=4.2e-58  Score=334.49  Aligned_cols=112  Identities=35%  Similarity=0.566  Sum_probs=109.4

Q ss_pred             cCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy9578           5 KRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLK   84 (122)
Q Consensus         5 krg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~~L~   84 (122)
                      .+|+++++||+|||++|+||+|++|+||++|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||+||+
T Consensus         5 ~rg~~a~~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~sYs~fi~~L~   84 (118)
T 2ftc_L            5 NRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLV   84 (118)
T ss_pred             ccchHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCcccchhhhHHHHhhChHHHHHHHHHHHHH
Q psy9578          85 KSSIQLDRKLLASIAITDKLVFSSIVNQIKEN  116 (122)
Q Consensus        85 k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~  116 (122)
                      ++||+|||||||||||+||.+|.+||+.++..
T Consensus        85 k~~I~LNRKvLa~lAi~dp~~F~~lv~~ak~~  116 (118)
T 2ftc_L           85 KCQVELNRKVLADLAIYEPKTFKSLAALASRR  116 (118)
T ss_pred             HhCCCccHHHHHHHHHcCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d2j01u1	117	a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus	3e-49
d2zjrn1	117	a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinoco	5e-48
d2gyco1	115	a.144.2.1 (O:2-116) Ribosomal protein L20 {Escheri	3e-47
d1gyza_	60	a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeol	1e-23

>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]} Length = 117

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Thermus thermophilus [TaxId: 274]

 Score =  150 bits (382), Expect = 3e-49
 Identities = 56/116 (48%), Positives = 80/116 (68%)

Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K GV  R +HKK+LK AKGY+G R+  +R A++ +  A  YAY  R+ +KR FR LW
Sbjct: 1   PRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLW 60

Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           I RINAA R+H + Y+TF++GLKK+ I++DRK LA +A+ +  VF+ +V + K   
Sbjct: 61  IVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 116

>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]} Length = 117

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  147 bits (374), Expect = 5e-48
 Identities = 61/116 (52%), Positives = 81/116 (69%)

Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K G+  R RHKKVLK+AKG++G R+  YR A Q +++A  Y YRDRRNKKR FR LW
Sbjct: 1   PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLW 60

Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           I RINA  R H M Y+TF+NGLK+++I L+RK+LA IA  +   F ++V+  +   
Sbjct: 61  IQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR 116

>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]} Length = 115

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]

 Score =  145 bits (368), Expect = 3e-47
 Identities = 73/115 (63%), Positives = 96/115 (83%)

Query: 3   RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWI 62
           RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR LWI
Sbjct: 1   RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWI 60

Query: 63  SRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           +RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L
Sbjct: 61  ARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 115

>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]} Length = 60

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Aquifex aeolicus [TaxId: 63363]

 Score = 84.2 bits (209), Expect = 1e-23
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           WI+RINAAVR + + Y+TF+NGLKK+ I+LDRK+LA +A+ D   F  +VN++KE L
Sbjct: 1   WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEAL 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d2zjrn1	117	Ribosomal protein L20 {Deinococcus radiodurans [Ta	100.0
d2j01u1	117	Ribosomal protein L20 {Thermus thermophilus [TaxId	100.0
d2gyco1	115	Ribosomal protein L20 {Escherichia coli [TaxId: 56	100.0
d1gyza_	60	Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63	99.97

>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.2e-60  Score=345.68  Aligned_cols=117  Identities=52%  Similarity=0.877  Sum_probs=115.3

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      ||||+|+++++||++||++|+||+|++|+||++|+|+|+|||+|||+||++|||+||+|||+|||||||++|+|||.||+
T Consensus         1 pRvk~g~~~~~rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~gl~YS~fi~   80 (117)
T d2zjrn1           1 PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFIN   80 (117)
T ss_dssp             CCCCCTTHHHHHHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHccccCCCccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      +|+++||+|||||||||||+||++|++||+.++++++
T Consensus        81 ~L~~~~I~LnRK~Ls~lAi~dp~~F~~lv~~aK~a~~  117 (117)
T d2zjrn1          81 GLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ  117 (117)
T ss_dssp             HHHHCTTCCCCSSHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred             HHHHhCCCCcHHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998764

>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.9e-60  Score=341.73  Aligned_cols=117  Identities=48%  Similarity=0.836  Sum_probs=115.4

Q ss_pred             CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578           2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN   81 (122)
Q Consensus         2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~   81 (122)
                      ||||+|+++++||++||++|+||+|++|+||++|+|+|+|||+|||+||+.|||+||+|||+|||||+|++|+|||.||+
T Consensus         1 pRvk~g~~~~~rrkkilk~akGfrG~~s~~~r~A~~~v~kAl~yayrdRk~kKr~fR~LWI~RINAa~r~~glsYS~fi~   80 (117)
T d2j01u1           1 PRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIH   80 (117)
T ss_dssp             CCCCCCSHHHHHHHHHHHHTTTCSSGGGTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHccccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578          82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT  118 (122)
Q Consensus        82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~  118 (122)
                      +|+++||+|||||||||||+||++|++||+.++.++.
T Consensus        81 ~L~k~~I~LnRKvLs~lAi~dp~~F~~lv~~~k~~~G  117 (117)
T d2j01u1          81 GLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQG  117 (117)
T ss_dssp             HHHTTCCSCSCTTTTTTTTSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCcccHHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998863

>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.4e-59  Score=335.43  Aligned_cols=115  Identities=63%  Similarity=1.032  Sum_probs=112.9

Q ss_pred             cccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy9578           3 RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNG   82 (122)
Q Consensus         3 Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~~   82 (122)
                      |||+|+++++||++||++|+||+|++++||++|+|+|+|||+|||+||+.||||||+|||+|||||+|+||+|||.||++
T Consensus         1 Rvk~g~~~~~rrkkilk~akGf~G~~~~~~r~A~~~v~kA~~ya~rdRk~kKr~fR~LWI~RINAA~r~~gl~Ys~fi~~   80 (115)
T d2gyco1           1 RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFING   80 (115)
T ss_dssp             CCCCCSSSSSSSSSSSSSCTTCCSSSSSCSTTSSSSSSSTTSSSTTCCTTSTTTGGGSSSSSHHHHSSSSSCCGGGTSTT
T ss_pred             CCCCcHHHHHHHHHHHHHccccCcCccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHh
Q psy9578          83 LKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL  117 (122)
Q Consensus        83 L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~  117 (122)
                      |+++||+|||||||||||+||++|++||+.++++|
T Consensus        81 L~k~~I~LnRKvLs~lAi~dp~~F~~lv~~aK~~l  115 (115)
T d2gyco1          81 LKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL  115 (115)
T ss_dssp             TTTSSSCCCSSSTTSSSSSCSSSSSTTTTTTTSCC
T ss_pred             HHHhCCcCcHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999988654

>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: PABP domain-like
superfamily: Ribosomal protein L20
family: Ribosomal protein L20
domain: Ribosomal protein L20
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=8.9e-32  Score=174.24  Aligned_cols=59  Identities=54%  Similarity=0.907  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhcc
Q psy9578          61 WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTN  119 (122)
Q Consensus        61 WI~RINAa~R~~glsYs~fi~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~~  119 (122)
                      ||+|||||+|+||+|||+||++|++++|.||||||||||++||++|++||+.+|++++.
T Consensus         1 WI~RINAa~r~~g~~YS~fi~~L~k~~I~LnRK~La~LAi~dp~~F~~lv~~~k~~l~~   59 (60)
T d1gyza_           1 WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQV   59 (60)
T ss_dssp             CCHHHHHHHTTTTCCSHHHHHHHHHHTCCCCSSSSHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHhCCCHHHHHHHHHHcCCCCcHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999875