Psyllid ID: psy9587

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MGPVDQNNASTAMELTEDEAELYDRQIRLTPLPLWNSLKMRQSCTTDKFDSGEWNPKRGQNQRQDRRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHcccHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccccccHHHHccccEEEEccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHcccHHHHHcccEEccHHHHHHHcccccccccccccccccccccccccHHccccccccccccccccccccccccHcHHHHHHHHHHHHcHHHHHHHHHHccEEEEEEccHcHHHHHHHHHHHHHcccEEEEEccccEEEcccccccEcccHHHccccHHHHHHHHHHHHccccEEEEcccccccccHHHHHcccEEEEEcccHHHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
mgpvdqnnasTAMELTEDEAELYDRQirltplplwnslkmrqscttdkfdsgewnpkrgqnqrqdrrpavprtnliykkkvcprwelnprpsayraHTVTLTTLhtnwagsqsYKIYVystgpltrvGAEIAKNIILSGVKSVclldsgvvtkedvntaqflaphedigknrakSSEARaqnlnpnvevtsnetkvdeiSEEFVHGFDVVIatscnpnqlikiddfcrskskislf
Flexible Loop (DISEMBL)
mgpvdqnnastAMELTEDEAELYDRQIRLtplplwnslkmRQSCTtdkfdsgewnpkrgqnqrqdrrpavprtnliykkkvcprwelnprpsayRAHTVTLTTlhtnwagsqsYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEdvntaqflaphedigkNRAKSsearaqnlnpnvevtsnetKVDEISEEFVHGFDVVIAtscnpnqlikiddfcrskskislf
Low Complexity Region (SEG)
MGPVDQNNASTAMELTEDEAELYDRQIRLTPLPLWNSLKMRQSCTTDKFDSGEWNPKRGQNQRQDRRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF
Disordered region (IsUnstruct)
*********************LYDRQIRLTPLPLWNSLKM********************************TNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFL************************************ISEEFVHGFDVVIATSCNPNQLIKIDDFCR********
Disordered Region (DISOPRED)
*************ELTEDEAELYDRQIRLTPLPLWNSLKMR****************************************************YRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF
Disordered Region (DISEMBL)
***********AMELTEDEAELYDRQIRLTPLPLWNSLKMRQSCT**********************PAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF
Disordered Region (DISPRO)
****DQNNASTAMELTEDEAELYDRQIRLTPLPLWNSLK***********************************************LNPRPSAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPVDQNNASTAMELTEDEAELYDRQIRLTPLPLWNSLKMRQSCTTDKFDSGEWNPKRGQNQRQDRRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q28DS0	347	SUMO-activating enzyme su	yes	N/A	0.457	0.311	0.454	2e-19
Q8JGT5	344	SUMO-activating enzyme su	N/A	N/A	0.457	0.313	0.445	1e-18
Q5NVN7	346	SUMO-activating enzyme su	yes	N/A	0.470	0.320	0.442	1e-17
Q9UBE0	346	SUMO-activating enzyme su	no	N/A	0.470	0.320	0.442	1e-17
Q6AXQ0	349	SUMO-activating enzyme su	yes	N/A	0.457	0.309	0.445	2e-17
Q9R1T2	350	SUMO-activating enzyme su	yes	N/A	0.457	0.308	0.454	3e-17
A2VE14	346	SUMO-activating enzyme su	yes	N/A	0.457	0.312	0.436	7e-17
Q6IQS6	348	SUMO-activating enzyme su	yes	N/A	0.470	0.318	0.424	9e-17
Q06624	347	DNA damage tolerance prot	yes	N/A	0.504	0.342	0.349	1e-15
Q5U300	1058	Ubiquitin-like modifier-a	no	N/A	0.440	0.098	0.416	2e-14

>sp|Q28DS0|SAE1_XENTR SUMO-activating enzyme subunit 1 OS=Xenopus tropicalis GN=sae1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 75/110 (68%), Gaps = 2/110 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   +G+NRA++S  RA+NLNP 
Sbjct: 45  LGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGSLGQNRAEASLNRARNLNPM 103

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           V V ++   +++ S++F   FDVV  TSC+ + L+++D  C  K  I  F
Sbjct: 104 VSVEADTENINQKSDDFFTQFDVVCLTSCSRDLLVRVDHICH-KHNIKFF 152

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.
Xenopus tropicalis (taxid: 8364)

>sp|Q8JGT5|SAE1_XENLA SUMO-activating enzyme subunit 1 OS=Xenopus laevis GN=sae1 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   +G+NRA++S  RA+NLNP 
Sbjct: 45  LGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGSLGQNRAEASLNRARNLNPM 103

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           V V ++   +++ S++F   FDVV  TSC  + L++++  C  K  I  F
Sbjct: 104 VSVEADTENINQKSDDFFTQFDVVCLTSCPSDLLVRVNHICH-KHNIKFF 152

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

>sp|Q5NVN7|SAE1_PONAB SUMO-activating enzyme subunit 1 OS=Pongo abelii GN=SAE1 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNL
Sbjct: 44  LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNL 102

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           NP V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct: 103 NPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Pongo abelii (taxid: 9601)

>sp|Q9UBE0|SAE1_HUMAN SUMO-activating enzyme subunit 1 OS=Homo sapiens GN=SAE1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNL
Sbjct: 44  LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNL 102

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           NP V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct: 103 NPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Homo sapiens (taxid: 9606)

>sp|Q6AXQ0|SAE1_RAT SUMO-activating enzyme subunit 1 OS=Rattus norvegicus GN=Sae1 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 2/110 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAEIAKN+IL+GVK + +LD   V+ ED+  AQFL     +G+NRA++S  RAQNLNP 
Sbjct: 50  LGAEIAKNLILAGVKGLTMLDHEQVSPEDLG-AQFLIRTGSVGQNRAEASLERAQNLNPM 108

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           V+V  +   +++  E F   FD V  T C+ + +IK+D  C   S I  F
Sbjct: 109 VDVKVDTEDIEKKPESFFTEFDAVCLTCCSKDVIIKVDQICHRNS-IKFF 157

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Rattus norvegicus (taxid: 10116)

>sp|Q9R1T2|SAE1_MOUSE SUMO-activating enzyme subunit 1 OS=Mus musculus GN=Sae1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     +G+NRA++S  RAQNLNP 
Sbjct: 51  LGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIQTGSVGRNRAEASLERAQNLNPM 109

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           V+V  +   V++  E F   FD V  T C+ + +IK+D  C   S I  F
Sbjct: 110 VDVKVDTEDVEKKPESFFTKFDAVCLTCCSRDVIIKVDQICHRNS-IKFF 158

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Mus musculus (taxid: 10090)

>sp|A2VE14|SAE1_BOVIN SUMO-activating enzyme subunit 1 OS=Bos taurus GN=SAE1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 2/110 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     +G+NRA++S  RAQNLNP 
Sbjct: 47  LGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIRTGSVGRNRAEASLERAQNLNPM 105

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct: 106 VDVKVDTENIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Bos taurus (taxid: 9913)

>sp|Q6IQS6|SAE1_DANRE SUMO-activating enzyme subunit 1 OS=Danio rerio GN=sae1 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +GAE+AKN+IL+GVK + LLD   VT+E    AQFL P +  G+N A++S  RAQ L
Sbjct: 45  LRGLGAEVAKNLILAGVKGLTLLDHEQVTEES-RRAQFLIPVDADGQNHAQASLERAQFL 103

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           NP VEV ++   V+   ++F   FD V  T C+ + ++++D  C S++ I +F
Sbjct: 104 NPMVEVKADTEPVESKPDDFFFQFDAVCLTRCSRDLMVRVDQLCASRN-IKVF 155

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

>sp|Q06624|RHC31_YEAST DNA damage tolerance protein RHC31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AOS1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 75/123 (60%), Gaps = 4/123 (3%)

Query: 106 TNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH 165
           T  A  +S K+ + + G    +G+EI K+I+LSG+  + +LD  +VT+ED+ + QF    
Sbjct: 26  TAQANMRSAKVLLINLGA---IGSEITKSIVLSGIGHLTILDGHMVTEEDLGS-QFFIGS 81

Query: 166 EDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDD 225
           ED+G+ +  +++ R Q+LNP +E+  ++  + E  EEF   FD+V+AT    ++ IKI+ 
Sbjct: 82  EDVGQWKIDATKERIQDLNPRIELNFDKQDLQEKDEEFFQQFDLVVATEMQIDEAIKINT 141

Query: 226 FCR 228
             R
Sbjct: 142 LTR 144

Could be involved in a ubiquitin-related process important for DNA damage tolerance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5U300|UBA1_RAT Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +G EIAKNIIL GVK+V L D G     D+ ++QF    EDIGKNRA+ S+ R   L
Sbjct: 80  LRGLGVEIAKNIILGGVKAVTLHDQGTTQWADL-SSQFYLREEDIGKNRAEVSQPRLAEL 138

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKS 231
           N  V VT+       + E+F+ GF VV+ T+    + +++ +FC S+ 
Sbjct: 139 NSYVPVTA---YTGPLVEDFLSGFQVVVLTNSPLEEQLRVGEFCHSRG 183

Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
242017702	337	sumo-1-activating enzyme E1a, putative [	0.427	0.299	0.558	1e-22
298402225	275	SUMO-1 activating enzyme [Heliconius mel	0.491	0.421	0.466	1e-20
298402217	275	SUMO-1 activating enzyme [Heliconius mel	0.491	0.421	0.466	1e-20
298402221	275	SUMO-1 activating enzyme [Heliconius mel	0.491	0.421	0.466	1e-20
298402233	275	SUMO-1 activating enzyme [Heliconius heu	0.491	0.421	0.458	2e-20
443691790	348	hypothetical protein CAPTEDRAFT_156595 [	0.457	0.310	0.509	2e-20
357620824	448	SUMO-1 activating enzyme [Danaus plexipp	0.457	0.241	0.477	6e-20
383850554	334	PREDICTED: SUMO-activating enzyme subuni	0.470	0.332	0.504	6e-20
307206526	334	SUMO-activating enzyme subunit 1 [Harpeg	0.470	0.332	0.504	7e-20
298402237	275	SUMO-1 activating enzyme [Heliconius heu	0.491	0.421	0.458	1e-19

>gi|242017702|ref|XP_002429326.1| sumo-1-activating enzyme E1a, putative [Pediculus humanus corporis] gi|212514229|gb|EEB16588.1| sumo-1-activating enzyme E1a, putative [Pediculus humanus corporis]

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
           GAEIAKNIILSGVKSV LLD GV+T+ED   +QFLAP E +G +RA++S  RAQ LNP V
Sbjct: 46  GAEIAKNIILSGVKSVVLLDDGVLTEED-TCSQFLAPVELVGSSRAEASLMRAQALNPMV 104

Query: 188 EVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229
            +T++ +++ E +E F   FDVVIAT C  ++L +I+  CR 
Sbjct: 105 NITADTSRIQEKNENFFKNFDVVIATECTLSELKRINQICRG 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298402225|gb|ADI82432.1| SUMO-1 activating enzyme [Heliconius melpomene melpomene] gi|298402227|gb|ADI82433.1| SUMO-1 activating enzyme [Heliconius melpomene melpomene]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 83/120 (69%), Gaps = 4/120 (3%)

Query: 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172
           S+K+ ++S   L+ +GAEIAKNIILSGVKSVCLLD   +T+ D+  +QFLAP + IG+NR
Sbjct: 1   SFKVLIFS---LSGLGAEIAKNIILSGVKSVCLLDDEKLTETDL-YSQFLAPPDKIGENR 56

Query: 173 AKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           A+ S  RA+ LNP V+V+     VD++ +++   FD+V AT     QL +I++ CR  ++
Sbjct: 57  AEISLPRAKALNPMVDVSFVTKPVDDLPDDYFKAFDIVCATGLKQEQLERINNICRDSNR 116

Source: Heliconius melpomene melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298402217|gb|ADI82428.1| SUMO-1 activating enzyme [Heliconius melpomene melpomene] gi|298402219|gb|ADI82429.1| SUMO-1 activating enzyme [Heliconius melpomene melpomene]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 83/120 (69%), Gaps = 4/120 (3%)

Query: 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172
           S+K+ ++S   L+ +GAEIAKNIILSGVKSVCLLD   +T+ D+  +QFLAP + IG+NR
Sbjct: 1   SFKVLIFS---LSGLGAEIAKNIILSGVKSVCLLDDEKLTETDL-YSQFLAPPDKIGENR 56

Query: 173 AKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           A+ S  RA+ LNP V+V+     VD++ +++   FD+V AT     QL +I++ CR  ++
Sbjct: 57  AEISLPRAKALNPMVDVSFVTKPVDDLPDDYFKAFDIVCATGLKQEQLERINNICRDSNR 116

Source: Heliconius melpomene melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298402221|gb|ADI82430.1| SUMO-1 activating enzyme [Heliconius melpomene melpomene] gi|298402223|gb|ADI82431.1| SUMO-1 activating enzyme [Heliconius melpomene melpomene] gi|298402253|gb|ADI82446.1| SUMO-1 activating enzyme [Heliconius heurippa] gi|298402289|gb|ADI82464.1| SUMO-1 activating enzyme [Heliconius cydno cordula] gi|298402291|gb|ADI82465.1| SUMO-1 activating enzyme [Heliconius cydno cordula] gi|298402293|gb|ADI82466.1| SUMO-1 activating enzyme [Heliconius cydno cordula] gi|298402295|gb|ADI82467.1| SUMO-1 activating enzyme [Heliconius cydno cordula]

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 83/120 (69%), Gaps = 4/120 (3%)

Query: 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172
           S+K+ ++S   L+ +GAEIAKNIILSGVKSVCLLD   +T+ D+  +QFLAP + IG+NR
Sbjct: 1   SFKVLIFS---LSGLGAEIAKNIILSGVKSVCLLDDEKLTETDL-YSQFLAPPDKIGENR 56

Query: 173 AKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           A+ S  RA+ LNP V+V+     VD++ +++   FD+V AT     QL +I++ CR  ++
Sbjct: 57  AEISLPRAKALNPMVDVSFVTKPVDDLPDDYFKAFDIVCATGLKQEQLERINNICRDSNR 116

Source: Heliconius melpomene melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298402233|gb|ADI82436.1| SUMO-1 activating enzyme [Heliconius heurippa] gi|298402235|gb|ADI82437.1| SUMO-1 activating enzyme [Heliconius heurippa] gi|298402255|gb|ADI82447.1| SUMO-1 activating enzyme [Heliconius heurippa]

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 4/120 (3%)

Query: 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172
           S+K+ ++S   L+ +GAEIAKNIILSGVKSVCLLD   +T+ D+  +QFLAP + IG+NR
Sbjct: 1   SFKVLIFS---LSGLGAEIAKNIILSGVKSVCLLDDEKLTETDL-YSQFLAPPDKIGENR 56

Query: 173 AKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           A+ S  RA+ LNP V+V+     VD++ +++   FD++ AT     QL +I++ CR  ++
Sbjct: 57  AEISLPRAKALNPMVDVSFVTKPVDDLPDDYFKAFDIICATGLKQEQLERINNICRDSNR 116

Source: Heliconius heurippa

Species: Heliconius heurippa

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443691790|gb|ELT93541.1| hypothetical protein CAPTEDRAFT_156595 [Capitella teleta]

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAE+AKNI+LSG+KS+ LLD  VVTKE   T+QFL P  ++GKNRA+SS  R Q LNP 
Sbjct: 45  LGAEVAKNIVLSGIKSLTLLDHQVVTKE-AFTSQFLIPRSELGKNRAESSLGRVQLLNPM 103

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           VE++++ T V +  + F   FDVV AT C   QL ++++ C  KS I  F
Sbjct: 104 VEISADPTDVADKEDAFFTDFDVVCATCCEKQQLQRLNEICH-KSDILFF 152

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|357620824|gb|EHJ72871.1| SUMO-1 activating enzyme [Danaus plexippus]

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 77/109 (70%), Gaps = 1/109 (0%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           ++ +GAEIAKNIILSGVKSVCLLDS  + + D+ + QFLAP + IG+NRA++S  RA+ L
Sbjct: 42  MSGLGAEIAKNIILSGVKSVCLLDSEKLKETDLYS-QFLAPPDKIGENRAETSLQRARAL 100

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           NP V+VT+    VD++ + +   FD++ AT     QL ++++ CR  +K
Sbjct: 101 NPMVDVTAETKAVDDLPDSYFATFDIICATGLKQEQLERVNNICRDNNK 149

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850554|ref|XP_003700860.1| PREDICTED: SUMO-activating enzyme subunit 1-like [Megachile rotundata]

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 2/113 (1%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L   GAEIAK+IIL+GVK+V  LD   VT ED  ++QFLAP E IGKNRA++S  RA+NL
Sbjct: 44  LNGFGAEIAKDIILAGVKAVTFLDHRNVTAED-RSSQFLAPKELIGKNRAEASLQRAKNL 102

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           N  V + ++ + +D+  + F   FDVV AT C   QL +I+D CR K K+  F
Sbjct: 103 NSMVIIEADTSNIDDKPDTFFSNFDVVCATQCTITQLKRINDLCR-KYKVKFF 154

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206526|gb|EFN84552.1| SUMO-activating enzyme subunit 1 [Harpegnathos saltator]

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L   GAEIAKNIIL+GV ++  LD   VT  D   +QF  P EDIGK++A++S ARAQNL
Sbjct: 44  LDGFGAEIAKNIILAGVNAITFLDHRNVTDLD-RCSQFFVPKEDIGKSKAEASLARAQNL 102

Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           NP V V ++  KVD+ S+E+   FDVV AT C   QL +I+  CR + K+  F
Sbjct: 103 NPMVNVNADTDKVDDKSDEYFGQFDVVCATHCTITQLKRINRICR-EHKVKFF 154

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|298402237|gb|ADI82438.1| SUMO-1 activating enzyme [Heliconius heurippa] gi|298402245|gb|ADI82442.1| SUMO-1 activating enzyme [Heliconius heurippa]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 4/120 (3%)

Query: 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172
           S+K+ +     L+ +GAEIAKNIILSGVKSVCLLD   +T+ D+  +QFLAP + IG+NR
Sbjct: 1   SFKVLIIG---LSGLGAEIAKNIILSGVKSVCLLDDEKLTEADL-YSQFLAPPDKIGENR 56

Query: 173 AKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           A+ S  RA+ LNP V+V+     VD++ +++   FD+V AT     QL +I++ CR  ++
Sbjct: 57  AEISLPRAKALNPMVDVSFVTKPVDDLPDDYFKAFDIVCATGLKQEQLERINNICRDSNR 116

Source: Heliconius heurippa

Species: Heliconius heurippa

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
FB|FBgn0029512	337	Aos1 "Aos1" [Drosophila melano	0.440	0.308	0.466	2.5e-26
UNIPROTKB|Q28DS0	347	sae1 "SUMO-activating enzyme s	0.457	0.311	0.454	3e-24
UNIPROTKB|Q8JGT5	344	sae1 "SUMO-activating enzyme s	0.457	0.313	0.445	1.6e-23
UNIPROTKB|B3KNJ4	299	SAE1 "cDNA FLJ14689 fis, clone	0.470	0.371	0.442	8.8e-23
UNIPROTKB|Q9UBE0	346	SAE1 "SUMO-activating enzyme s	0.470	0.320	0.442	1.3e-22
UNIPROTKB|Q5NVN7	346	SAE1 "SUMO-activating enzyme s	0.470	0.320	0.442	1.3e-22
UNIPROTKB|A2VE14	346	SAE1 "SUMO-activating enzyme s	0.457	0.312	0.436	2.1e-22
RGD|1306098	349	Sae1 "SUMO1 activating enzyme	0.457	0.309	0.445	4.9e-22
UNIPROTKB|E2RSL5	346	SAE1 "Uncharacterized protein"	0.457	0.312	0.436	5.7e-22
UNIPROTKB|F1RM03	346	SAE1 "Uncharacterized protein"	0.457	0.312	0.436	5.7e-22

FB|FBgn0029512 Aos1 "Aos1" [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 49/105 (46%), Positives = 67/105 (63%)

Query:   124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
             L  +GAEI KNIILSGV SV LLD   VT+ED   +QFL P E +  NRA++S  RA+ L
Sbjct:    47 LCGLGAEITKNIILSGVNSVKLLDDKDVTEEDF-CSQFLVPRESLNTNRAEASLTRARAL 105

Query:   184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCR 228
             NP V+++++   + E + EF   FDVV+       +L++ID  CR
Sbjct:   106 NPMVDISADREPLKEKTSEFFGQFDVVVVNGATNEELLRIDTICR 150

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;NAS

GO:0031510 "SUMO activating enzyme complex" evidence=ISS

GO:0019950 "SMT3-dependent protein catabolic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

UNIPROTKB|Q28DS0 sae1 "SUMO-activating enzyme subunit 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 239 (89.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 50/110 (45%), Positives = 75/110 (68%)

Query:   127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
             +GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   +G+NRA++S  RA+NLNP 
Sbjct:    45 LGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGSLGQNRAEASLNRARNLNPM 103

Query:   187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             V V ++   +++ S++F   FDVV  TSC+ + L+++D  C  K  I  F
Sbjct:   104 VSVEADTENINQKSDDFFTQFDVVCLTSCSRDLLVRVDHICH-KHNIKFF 152

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|Q8JGT5 sae1 "SUMO-activating enzyme subunit 1" [Xenopus laevis (taxid:8355)]

 Score = 232 (86.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
 Identities = 49/110 (44%), Positives = 74/110 (67%)

Query:   127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
             +GAE+AKN+IL+GVK++ LLD   V+ ED + AQFL P   +G+NRA++S  RA+NLNP 
Sbjct:    45 LGAEVAKNLILAGVKALTLLDHEQVSSED-SRAQFLIPSGSLGQNRAEASLNRARNLNPM 103

Query:   187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             V V ++   +++ S++F   FDVV  TSC  + L++++  C  K  I  F
Sbjct:   104 VSVEADTENINQKSDDFFTQFDVVCLTSCPSDLLVRVNHICH-KHNIKFF 152

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|B3KNJ4 SAE1 "cDNA FLJ14689 fis, clone NT2RP2005204, highly similar to Ubiquitin-like 1-activating enzyme E1A" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 50/113 (44%), Positives = 70/113 (61%)

Query:   124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
             L  +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNL
Sbjct:    44 LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNL 102

Query:   184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             NP V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct:   103 NPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9UBE0 SAE1 "SUMO-activating enzyme subunit 1" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 50/113 (44%), Positives = 70/113 (61%)

Query:   124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
             L  +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNL
Sbjct:    44 LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNL 102

Query:   184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             NP V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct:   103 NPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0004839 "ubiquitin activating enzyme activity" evidence=TAS

GO:0043008 "ATP-dependent protein binding" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=TAS;IPI

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0008022 "protein C-terminus binding" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019948 "SUMO activating enzyme activity" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

UNIPROTKB|Q5NVN7 SAE1 "SUMO-activating enzyme subunit 1" [Pongo abelii (taxid:9601)]

 Score = 225 (84.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 50/113 (44%), Positives = 70/113 (61%)

Query:   124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
             L  +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNL
Sbjct:    44 LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNL 102

Query:   184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             NP V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct:   103 NPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|A2VE14 SAE1 "SUMO-activating enzyme subunit 1" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
 Identities = 48/110 (43%), Positives = 69/110 (62%)

Query:   127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
             +GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     +G+NRA++S  RAQNLNP 
Sbjct:    47 LGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIRTGSVGRNRAEASLERAQNLNPM 105

Query:   187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct:   106 VDVKVDTENIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1306098 Sae1 "SUMO1 activating enzyme subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
 Identities = 49/110 (44%), Positives = 69/110 (62%)

Query:   127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
             +GAEIAKN+IL+GVK + +LD   V+ ED+  AQFL     +G+NRA++S  RAQNLNP 
Sbjct:    50 LGAEIAKNLILAGVKGLTMLDHEQVSPEDLG-AQFLIRTGSVGQNRAEASLERAQNLNPM 108

Query:   187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             V+V  +   +++  E F   FD V  T C+ + +IK+D  C   S I  F
Sbjct:   109 VDVKVDTEDIEKKPESFFTEFDAVCLTCCSKDVIIKVDQICHRNS-IKFF 157

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;ISO;ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISO;ISS

GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E2RSL5 SAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 5.7e-22, Sum P(2) = 5.7e-22
 Identities = 48/110 (43%), Positives = 69/110 (62%)

Query:   127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
             +GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     +G+NRA++S  RAQNLNP 
Sbjct:    47 LGAEIAKNLILAGVKGLTMLDPEQVSPEDPG-AQFLVRTGSVGRNRAEASLERAQNLNPM 105

Query:   187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct:   106 VDVKVDIENIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RM03 SAE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 5.7e-22, Sum P(2) = 5.7e-22
 Identities = 48/110 (43%), Positives = 68/110 (61%)

Query:   127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
             +GAEIAKN+IL+GVK + +LD   V+ ED   AQFL     +G+NRA++S  RAQNLNP 
Sbjct:    47 LGAEIAKNLILAGVKGLTMLDHEQVSPEDPG-AQFLIRTGSVGRNRAEASLERAQNLNPM 105

Query:   187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
             V+V  +   ++   E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct:   106 VDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	236
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	5e-35
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	5e-27
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	1e-22
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	2e-19
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	1e-17
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	2e-16
pfam00899	134	pfam00899, ThiF, ThiF family	1e-14
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	4e-14
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	9e-08
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	4e-07
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	4e-07
PTZ00245	287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	6e-07
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-06
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	2e-05
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	6e-05
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	3e-04
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	4e-04
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	7e-04
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	0.001
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	0.002
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	0.003

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score =  123 bits (310), Expect = 5e-35
 Identities = 50/103 (48%), Positives = 73/103 (70%), Gaps = 1/103 (0%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAEIAKN++LSG+ S+ +LD   VT+ED+  AQFL P ED+G+NRA++S  R + LNP 
Sbjct: 32  LGAEIAKNLVLSGIGSLTILDDRTVTEEDLG-AQFLIPAEDLGQNRAEASLERLRALNPR 90

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229
           V+V+ +   + E  EEF   FDVV+AT  +  +L+KI++ CR 
Sbjct: 91  VKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRK 133

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score =  104 bits (262), Expect = 5e-27
 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 4/104 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G EIAKN+IL+GVKSV L D+   +  D+ ++QF    EDIGKNRA++S+AR   LNP 
Sbjct: 30  LGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKNRAEASQARLAELNPY 88

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK 230
           V VT +      ++ + +  F VV+ T  +    +KI++FC S 
Sbjct: 89  VPVTVST---GPLTTDELLKFQVVVLTDASLEDQLKINEFCHSP 129

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 90.9 bits (226), Expect = 1e-22
 Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAP-HEDIGKNRAKSSEARAQN 182
              +GAEIAKN++L+G+ S+ ++D  +V+ ED+ +  FL     + G NRA +S    Q 
Sbjct: 27  AGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE 86

Query: 183 LNPNVEVTSNETKV---DEISEEFVHGFDVVIATSCNPNQLIKIDDFCR 228
           LNPNV+++  E      D   EE++  F +VIAT  N  +  K++D CR
Sbjct: 87  LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCR 135

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G EIAKN++L+GVKSV L D+      D+++  F    +D+G+NRA++   +   LNP 
Sbjct: 35  LGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSS-NFFLSEDDVGRNRAEAVVKKLAELNPY 93

Query: 187 VEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRS 229
           V V+S          EEF+  F  V+ T  +     +I+DFC S
Sbjct: 94  VHVSS----SSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHS 133

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +G+EIA N+  SGV  + L+D   V   ++N  QFLA   DIGK +A+ +  R   L
Sbjct: 7   LGGLGSEIALNLARSGVGKITLIDFDTVELSNLN-RQFLARQADIGKPKAEVAARRLNEL 65

Query: 184 NPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           NP V VT+    + E + ++F+ G D+VI    N      ++  C+ +  I + 
Sbjct: 66  NPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACK-ELGIPVI 118

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 125 TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184
           T  G EI KN++L G+ S  ++D   V +ED+    FL     +GK+RA+++    Q LN
Sbjct: 29  TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQELN 87

Query: 185 PNVE----VTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKS 231
           P+V       S E  +D     F   F VVIAT+   + L+++ D   S +
Sbjct: 88  PDVNGSAVEESPEALLDN-DPSFFSQFTVVIATNLPESTLLRLADVLWSAN 137

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G+  A+ +  +GV  + L+D   V   ++N  Q L    DIGK +A+ ++ R + +NP+
Sbjct: 12  LGSPAAEYLARAGVGKLTLVDFDTVELSNLNR-QILFTESDIGKPKAEVAKERLRAINPD 70

Query: 187 VEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           VEV +   ++   + EE + G D+V+    N      ++D C  +  
Sbjct: 71  VEVEAYPERLTPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGI 117

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G+  AK + L+GV  + ++D   V   ++   QFL    D+GK +A+ +    + LNP 
Sbjct: 41  LGSPAAKYLALAGVGKLTIVDFDTVELSNLQR-QFLFTEADVGKPKAEVAAKALRKLNPL 99

Query: 187 VEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           VEV +   ++DE + EE +  FDVV+  + N      I+D C  K  I L 
Sbjct: 100 VEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACV-KLGIPLV 149

Length = 254

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           KI V   G L   G E+ KN+ LSG +++ ++D   +   ++N  QFL   +DIGK +A+
Sbjct: 1   KILVIGAGGL---GCELLKNLALSGFRNIHVIDMDTIDVSNLNR-QFLFREKDIGKPKAE 56

Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIA 212
            +     +  P V VT +  K+ +  EEF   F+++I 
Sbjct: 57  VAAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIIC 94

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 138 SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197
           +GV  + L+D  VV   ++   Q L    D+G+ +A+++  R + +NP+VE+ +   ++D
Sbjct: 43  AGVGKLGLVDDDVVELSNLQR-QILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLD 101

Query: 198 EIS-EEFVHGFDVVIATSCNPNQLIK--IDDFCRSKSKI 233
             + EE + G+D+V+   C  N   +  I+D C    K 
Sbjct: 102 AENAEELIAGYDLVL--DCTDNFATRYLINDACVKLGKP 138

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G E+ KN+ L G   + ++D   +   ++N  QFL   +DIG+ +++ +     + NPN
Sbjct: 10  IGCELLKNLALMGFGQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKSEVAAEAVNDRNPN 68

Query: 187 VEVTSNETKVDEIS---EEFVHGFDVVI 211
            +V   + KV       + F   F +++
Sbjct: 69  CKVVPYQNKVGPEQDFNDTFFEQFHIIV 96

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
            AE AKN++L+GV++V + D G+VT  DV T   +    + G  R   +    Q LNP+V
Sbjct: 38  AAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLM--QGEAGGTRGARALGALQRLNPHV 95

Query: 188 EVTSNETKVDEIS 200
            V    TK+D  S
Sbjct: 96  SVYDAVTKLDGSS 108

Length = 287

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G E+ KN++L+G   + ++D   +   ++N  QFL   + +GK++A+ ++    + NPN
Sbjct: 10  IGCELLKNLVLTGFGEIHIIDLDTIDLSNLNR-QFLFRKKHVGKSKAQVAKEAVLSFNPN 68

Query: 187 VEVTSNETKV--DEISEEFVHGFDVV 210
           V++ +    +   + + EF   FD+V
Sbjct: 69  VKIVAYHANIKDPDFNVEFFKQFDLV 94

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 11/111 (9%)

Query: 127 VGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQ 181
           +G E+ KN  L GV +     + + D   + K ++N  QFL    D+GK +++ + A  +
Sbjct: 10  IGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNR-QFLFRPHDVGKPKSEVAAAAVK 68

Query: 182 NLNPNVEVTSNETKVDEISE-----EFVHGFDVVIATSCNPNQLIKIDDFC 227
            +NP++++T+ + +V   +E     EF    D V     N +  + +D  C
Sbjct: 69  AMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRC 119

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL---N 184
           G+ IA  +  SGV ++ L+D  VV   ++N  Q+      IG+      EA  +NL   N
Sbjct: 11  GSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFL--SQIGE---PKVEALKENLREIN 65

Query: 185 PNVEVTSNETKVDEIS-EEFVHGFDVVI 211
           P V++ +   K+DE + E      D+V+
Sbjct: 66  PFVKIEAINIKIDENNLEGLFGDCDIVV 93

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL---N 184
           G+ IA  +  SGV ++ L+D  VV   ++N  Q+      IG       EA  +NL   N
Sbjct: 40  GSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFI--SQIGM---PKVEALKENLLEIN 94

Query: 185 PNVEVTSNETKVDEIS-EEFVHGFDVVI 211
           P VE+ ++  K+DE + EE     D+V+
Sbjct: 95  PFVEIEAHNEKIDEDNIEELFKDCDIVV 122

Length = 212

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G+ +A N+  +G+  + L+D  VV   ++N  Q+ A    +G+ + ++ +     +NP 
Sbjct: 32  LGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQ--VGEPKTEALKENISEINPY 89

Query: 187 VEVTSNETKVDEIS-EEFVHGFDVVIATSCNP 217
            E+ + + K+ E + ++F    D+V     N 
Sbjct: 90  TEIEAYDEKITEENIDKFFKDADIVCEAFDNA 121

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
           G+  A  +  +GV ++ ++D   V   ++   Q L   ED+G+ + + +  R + LN ++
Sbjct: 33  GSPAALYLAGAGVGTIVIVDDDHVDLSNLQR-QILFTEEDVGRPKVEVAAQRLRELNSDI 91

Query: 188 EVTSNETKVD-EISEEFVHGFDVVIATSCNPNQLIK--IDDFC 227
           +VT+ + +V  E  E  ++  D+V+   C  N   +  I+D C
Sbjct: 92  QVTALKERVTAENLELLINNVDLVL--DCTDNFATRYLINDAC 132

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 14/126 (11%)

Query: 112 QSYKIYVYSTGPLTRVGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFLAPHE 166
           Q+  I++   G +   G E+ KN  L GV +     + + D  ++ K ++N  QFL    
Sbjct: 418 QNLNIFLVGCGAI---GCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNR-QFLFRPH 473

Query: 167 DIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISE-----EFVHGFDVVIATSCNPNQLI 221
            IGK ++ ++      +NP +++ +++ +V   +E     EF    DVVI    N     
Sbjct: 474 HIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARR 533

Query: 222 KIDDFC 227
            +D  C
Sbjct: 534 YVDSRC 539

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           VG+   + +  SG+  + L+D   V   + N  Q  A   DIGK + +  + R + +NP 
Sbjct: 41  VGSWAVEALARSGIGRITLIDMDDVCVTNTNR-QIHALLGDIGKPKVEVMKERIKQINPE 99

Query: 187 VEVTSNETKVDE--ISEEFVHGFDVVI 211
            EVT+    + E  + +    GFD VI
Sbjct: 100 CEVTAINDFITEENLEDLLSKGFDYVI 126

Length = 263

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 139 GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDE 198
           GV ++ ++D  VV + ++   Q L   + +G+ +  S+  R   LNP+V+V + + +V  
Sbjct: 158 GVGTLGIVDHDVVDRSNLQR-QILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTS 216

Query: 199 IS-EEFVHGFDVVIATSCN 216
            + E  +   DVV+  + N
Sbjct: 217 DNVEALLQDVDVVVDGADN 235

Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
PRK08223	287	hypothetical protein; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.98
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.98
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	99.98
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.97
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.97
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	99.97
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	99.97
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.97
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	99.97
PRK14851	679	hypothetical protein; Provisional	99.97
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	99.96
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.96
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.96
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.96
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	99.96
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.96
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.96
PRK14852	989	hypothetical protein; Provisional	99.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.96
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.96
PRK07877	722	hypothetical protein; Provisional	99.96
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.96
KOG2017|consensus	427		99.95
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.95
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.95
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.95
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.94
PRK06153	393	hypothetical protein; Provisional	99.93
KOG2014|consensus	331		99.93
KOG2013|consensus	603		99.93
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.93
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.93
KOG2015|consensus	422		99.91
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.91
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.89
KOG2018|consensus	430		99.89
KOG2012|consensus	1013		99.89
KOG2016|consensus	523		99.87
KOG2012|consensus	1013		99.86
KOG2336|consensus	422		99.74
KOG2337|consensus	669		99.58
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.35
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.84
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.16
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.07
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.04
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.93
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.92
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.72
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.71
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.4
PRK04148	134	hypothetical protein; Provisional	97.34
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.28
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.24
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.23
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.22
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.14
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.1
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.08
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.07
PRK10637	457	cysG siroheme synthase; Provisional	97.05
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.05
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.89
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.81
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.79
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.77
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.72
PTZ00117	319	malate dehydrogenase; Provisional	96.66
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.63
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.62
PLN02602	350	lactate dehydrogenase	96.56
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.56
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.46
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.42
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.41
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.4
KOG4169|consensus	261		96.4
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.39
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.37
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.35
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.18
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.18
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.15
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.13
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.1
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.09
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.08
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.05
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.02
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.97
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.96
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.94
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.94
PRK08374	336	homoserine dehydrogenase; Provisional	95.92
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.9
PLN00203	519	glutamyl-tRNA reductase	95.89
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.88
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.87
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.86
PRK06270	341	homoserine dehydrogenase; Provisional	95.85
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.84
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.84
PRK06141	314	ornithine cyclodeaminase; Validated	95.8
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.76
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.73
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.72
PTZ00325	321	malate dehydrogenase; Provisional	95.71
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.7
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.69
PRK08618	325	ornithine cyclodeaminase; Validated	95.65
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.64
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.64
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.64
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.63
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	95.63
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	95.62
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.59
PRK07340	304	ornithine cyclodeaminase; Validated	95.59
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.58
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.57
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.54
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.54
PRK06223	307	malate dehydrogenase; Reviewed	95.52
PRK09496	453	trkA potassium transporter peripheral membrane com	95.5
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	95.45
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.42
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	95.42
KOG0069|consensus	336		95.41
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.39
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.36
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	95.35
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	95.35
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.33
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.31
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.3
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.29
PRK09496	453	trkA potassium transporter peripheral membrane com	95.28
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.28
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.26
PRK07417	279	arogenate dehydrogenase; Reviewed	95.26
PRK08291	330	ectoine utilization protein EutC; Validated	95.21
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.2
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	95.19
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.16
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.13
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.03
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.03
PRK05442	326	malate dehydrogenase; Provisional	95.03
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.02
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.01
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.98
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.96
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.95
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.94
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.84
PRK07063	260	short chain dehydrogenase; Provisional	94.83
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.81
PRK07680	273	late competence protein ComER; Validated	94.81
PRK06392	326	homoserine dehydrogenase; Provisional	94.8
PRK09242	257	tropinone reductase; Provisional	94.73
PRK05854	313	short chain dehydrogenase; Provisional	94.72
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.72
PLN00106	323	malate dehydrogenase	94.72
PRK06197	306	short chain dehydrogenase; Provisional	94.67
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.64
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.64
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.62
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	94.6
KOG2014|consensus	331		94.57
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	94.48
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	94.48
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.48
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.47
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	94.46
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	94.42
PRK13018	378	cell division protein FtsZ; Provisional	94.39
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.38
PRK07574	385	formate dehydrogenase; Provisional	94.33
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.28
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	94.27
PRK08251	248	short chain dehydrogenase; Provisional	94.23
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.21
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.21
PLN03209	576	translocon at the inner envelope of chloroplast su	94.2
PRK06545	359	prephenate dehydrogenase; Validated	94.2
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.18
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.18
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	94.17
PRK07831	262	short chain dehydrogenase; Provisional	94.17
PRK10669	558	putative cation:proton antiport protein; Provision	94.17
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.16
PRK07062	265	short chain dehydrogenase; Provisional	94.14
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.13
PLN02688	266	pyrroline-5-carboxylate reductase	94.12
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.08
PRK09330	384	cell division protein FtsZ; Validated	94.05
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.02
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.01
PLN03139	386	formate dehydrogenase; Provisional	93.98
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.97
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.94
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.92
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.89
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.87
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.84
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.84
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	93.83
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.8
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.79
KOG0022|consensus	375		93.76
PLN02477	410	glutamate dehydrogenase	93.76
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	93.74
PTZ00431	260	pyrroline carboxylate reductase; Provisional	93.69
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.68
PRK06199	379	ornithine cyclodeaminase; Validated	93.68
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.68
PLN02427	386	UDP-apiose/xylose synthase	93.67
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	93.63
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	93.61
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	93.6
PRK05875	276	short chain dehydrogenase; Provisional	93.6
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	93.57
PLN02206	442	UDP-glucuronate decarboxylase	93.57
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	93.56
PRK06046	326	alanine dehydrogenase; Validated	93.55
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.52
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.51
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.49
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.49
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.47
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	93.47
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.46
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.4
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	93.39
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.37
PRK08818	370	prephenate dehydrogenase; Provisional	93.35
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.33
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.31
PLN02852	491	ferredoxin-NADP+ reductase	93.31
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	93.3
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.29
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.29
CHL00194	317	ycf39 Ycf39; Provisional	93.27
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.22
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.2
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.2
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.16
PRK13529	563	malate dehydrogenase; Provisional	93.14
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	93.11
PRK13243	333	glyoxylate reductase; Reviewed	93.09
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.07
KOG0024|consensus	354		93.06
PRK05867	253	short chain dehydrogenase; Provisional	93.06
PRK06349	426	homoserine dehydrogenase; Provisional	93.06
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	93.05
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	93.04
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.98
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.98
PRK05866	293	short chain dehydrogenase; Provisional	92.92
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	92.92
PRK06194	287	hypothetical protein; Provisional	92.85
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	92.81
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.78
PRK14982	340	acyl-ACP reductase; Provisional	92.76
PRK08655	437	prephenate dehydrogenase; Provisional	92.74
PTZ00188	506	adrenodoxin reductase; Provisional	92.72
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.72
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	92.71
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.68
PLN02240	352	UDP-glucose 4-epimerase	92.68
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.68
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.66
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.65
PRK06523	260	short chain dehydrogenase; Provisional	92.62
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.62
PLN02780	320	ketoreductase/ oxidoreductase	92.61
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	92.57
PRK13403	335	ketol-acid reductoisomerase; Provisional	92.57
PLN02928	347	oxidoreductase family protein	92.56
PRK12862	763	malic enzyme; Reviewed	92.55
PLN02214	342	cinnamoyl-CoA reductase	92.54
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	92.52
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.52
PRK07478	254	short chain dehydrogenase; Provisional	92.51
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	92.51
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	92.5
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	92.48
PLN02166	436	dTDP-glucose 4,6-dehydratase	92.47
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	92.44
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	92.39
PRK12480	330	D-lactate dehydrogenase; Provisional	92.38
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	92.33
PRK10537	393	voltage-gated potassium channel; Provisional	92.28
PRK15076	431	alpha-galactosidase; Provisional	92.28
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	92.28
PRK06949	258	short chain dehydrogenase; Provisional	92.27
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.25
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	92.25
PRK06125	259	short chain dehydrogenase; Provisional	92.24
PRK08339	263	short chain dehydrogenase; Provisional	92.22
PRK06567	1028	putative bifunctional glutamate synthase subunit b	92.19
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	92.14
PRK09414	445	glutamate dehydrogenase; Provisional	92.14
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	92.13
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	92.12
PRK14030	445	glutamate dehydrogenase; Provisional	92.1
PRK00811	283	spermidine synthase; Provisional	92.09
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.08
PRK09186	256	flagellin modification protein A; Provisional	92.08
PRK12939	250	short chain dehydrogenase; Provisional	92.03
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.03
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	92.03
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.01
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.99
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	91.98
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	91.98
PRK06138	252	short chain dehydrogenase; Provisional	91.97
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.96
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.93
PRK06181	263	short chain dehydrogenase; Provisional	91.92
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.92
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.9
PRK07814	263	short chain dehydrogenase; Provisional	91.85
PRK06398	258	aldose dehydrogenase; Validated	91.84
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	91.79
PRK06436	303	glycerate dehydrogenase; Provisional	91.79
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	91.78
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	91.76
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.68
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	91.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	91.63
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.63
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.62
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.61
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	91.6
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.6
PRK06487	317	glycerate dehydrogenase; Provisional	91.58
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	91.57
PRK08278	273	short chain dehydrogenase; Provisional	91.56
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	91.53
PLN02740	381	Alcohol dehydrogenase-like	91.51
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	91.48
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	91.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.44
PRK05876	275	short chain dehydrogenase; Provisional	91.42
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	91.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.39
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	91.34
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.33
PTZ00317	559	NADP-dependent malic enzyme; Provisional	91.33
PRK14031	444	glutamate dehydrogenase; Provisional	91.32
PRK07856	252	short chain dehydrogenase; Provisional	91.31
PLN02256	304	arogenate dehydrogenase	91.3
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	91.26
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.25
PLN02253	280	xanthoxin dehydrogenase	91.25
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	91.24
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.08
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	91.07
PRK06407	301	ornithine cyclodeaminase; Provisional	91.05
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.02
PRK08264	238	short chain dehydrogenase; Validated	91.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.97
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	90.95
PRK12320	699	hypothetical protein; Provisional	90.94
PRK07589	346	ornithine cyclodeaminase; Validated	90.91
PRK12861	764	malic enzyme; Reviewed	90.91
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	90.9
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	90.9
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	90.84
PRK07453	322	protochlorophyllide oxidoreductase; Validated	90.8
PRK05717	255	oxidoreductase; Validated	90.79
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	90.76
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	90.75
PRK05479	330	ketol-acid reductoisomerase; Provisional	90.74
PRK06198	260	short chain dehydrogenase; Provisional	90.73
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	90.7
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	90.69
PRK13984	604	putative oxidoreductase; Provisional	90.66
PRK06932	314	glycerate dehydrogenase; Provisional	90.59
PLN02494	477	adenosylhomocysteinase	90.58
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.46
PRK12831	464	putative oxidoreductase; Provisional	90.43
PRK07067	257	sorbitol dehydrogenase; Provisional	90.39
PRK06139	330	short chain dehydrogenase; Provisional	90.39
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	90.38
PTZ00075	476	Adenosylhomocysteinase; Provisional	90.38
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	90.36
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.33
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	90.31
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	90.3
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	90.22
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	90.18
cd02191	303	FtsZ FtsZ is a GTPase that is similar to the eukar	90.13
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	90.1
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	90.08
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	90.05
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.03
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	90.03
PRK06185	407	hypothetical protein; Provisional	90.02
PRK06841	255	short chain dehydrogenase; Provisional	89.98
PRK12744	257	short chain dehydrogenase; Provisional	89.98
PRK08277	278	D-mannonate oxidoreductase; Provisional	89.96
PLN02695	370	GDP-D-mannose-3',5'-epimerase	89.95
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.92
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	89.88
PRK11728	393	hydroxyglutarate oxidase; Provisional	89.87
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.86
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	89.85
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	89.81
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	89.8
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	89.79
PLN02896	353	cinnamyl-alcohol dehydrogenase	89.78
PRK06823	315	ornithine cyclodeaminase; Validated	89.76
PRK08265	261	short chain dehydrogenase; Provisional	89.71
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	89.7
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.7
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.68
PRK06179	270	short chain dehydrogenase; Provisional	89.67
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	89.66
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	89.66
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	89.66
PRK07035	252	short chain dehydrogenase; Provisional	89.65
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	89.63
PRK11579	346	putative oxidoreductase; Provisional	89.62
PRK07102	243	short chain dehydrogenase; Provisional	89.61
PLN00016	378	RNA-binding protein; Provisional	89.57
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	89.55
PLN02827	378	Alcohol dehydrogenase-like	89.52
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	89.52
PRK08507	275	prephenate dehydrogenase; Validated	89.5
PRK08324	681	short chain dehydrogenase; Validated	89.49
KOG1201|consensus	300		89.47
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	89.46
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	89.45
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.4
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.39
PRK06184	502	hypothetical protein; Provisional	89.34
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	89.24
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	89.24
PRK08628	258	short chain dehydrogenase; Provisional	89.23
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	89.22
PRK06847	375	hypothetical protein; Provisional	89.15
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	89.15
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	89.13
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	89.12
PRK07825	273	short chain dehydrogenase; Provisional	89.12
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.1
KOG2250|consensus	514		89.09
PLN02306	386	hydroxypyruvate reductase	89.06
PRK08244	493	hypothetical protein; Provisional	89.03
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.0
PRK06753	373	hypothetical protein; Provisional	88.99
PRK09126	392	hypothetical protein; Provisional	88.95
PRK07523	255	gluconate 5-dehydrogenase; Provisional	88.95
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.94
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	88.89
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	88.82
COG0673	342	MviM Predicted dehydrogenases and related proteins	88.8
PRK08013	400	oxidoreductase; Provisional	88.77
PRK08643	256	acetoin reductase; Validated	88.71
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	88.68
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.66
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	88.65
PRK05855	582	short chain dehydrogenase; Validated	88.65
PLN02464	627	glycerol-3-phosphate dehydrogenase	88.65
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	88.64
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	88.64
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	88.61
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	88.6
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.59
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	88.58
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	88.58
TIGR01746	367	Thioester-redct thioester reductase domain. It has	88.57
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	88.56
PLN00198	338	anthocyanidin reductase; Provisional	88.55
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.55
PRK07236	386	hypothetical protein; Provisional	88.54
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	88.52
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	88.49
PRK08300	302	acetaldehyde dehydrogenase; Validated	88.47
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	88.47
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	88.44

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=9.8e-36  Score=254.73  Aligned_cols=137  Identities=38%  Similarity=0.555  Sum_probs=130.2

Q ss_pred             ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587          99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS  176 (236)
Q Consensus        99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~  176 (236)
                      .+|+||+++||.++  +++.++|+|+||||+||+++++|+++||++|+|+|+|.|+.+|| +|||+++.+|+|++|++++
T Consensus         2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL-~rqfl~~~~diG~~Ka~a~   80 (197)
T cd01492           2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDL-GAQFLIPAEDLGQNRAEAS   80 (197)
T ss_pred             chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhC-CCCccccHHHcCchHHHHH
Confidence            47999999999988  46778999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         177 EARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       177 ~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++|+++||+++|+.+...+++...+++++||+||+|.++.+.+..++++|+++++|+|+
T Consensus        81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~  140 (197)
T cd01492          81 LERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYA  140 (197)
T ss_pred             HHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999998887666788999999999999999999999999999999974

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=1.8e-34  Score=246.98  Aligned_cols=136  Identities=29%  Similarity=0.409  Sum_probs=127.4

Q ss_pred             cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCC--CcCCChHHHH
Q psy9587         100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH--EDIGKNRAKS  175 (236)
Q Consensus       100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~--~dIGk~Kaea  175 (236)
                      +|+||+++||.++  +++.++|+|+||||+||+++++|+++||++|+|+|+|.++++|+ +|||+++.  +|+|++|+++
T Consensus         1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl-~rq~~~~~~~~~iG~~Ka~~   79 (198)
T cd01485           1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL-GSNFFLDAEVSNSGMNRAAA   79 (198)
T ss_pred             CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcC-cccEecccchhhcCchHHHH
Confidence            5999999999987  56779999999999999999999999999999999999999999 99999998  8999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCC---cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         176 SEARAQNLNPNVEVTSNETKVD---EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~---~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++|+++||+++|+.+...+.   +...+++++||+||+|.|+...+..++++|++++||+|+
T Consensus        80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~  143 (198)
T cd01485          80 SYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFIS  143 (198)
T ss_pred             HHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999988774   234678999999999999999999999999999999984

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=2.8e-34  Score=246.33  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=128.9

Q ss_pred             cchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587         100 TLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus       100 rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ||+||+++  ||.++  +++.++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|| +|||+++++|+|++|+++
T Consensus         1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL-~Rq~l~~~~diG~~Ka~~   79 (202)
T TIGR02356         1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNL-QRQILFTEEDVGRPKVEV   79 (202)
T ss_pred             CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccch-hhhhccChhhCCChHHHH
Confidence            69999998  99877  56778999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++|+++||+++++.+...+++.+ .++++++|+||+|+|+.+++.+++++|+++++|+|+
T Consensus        80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~  141 (202)
T TIGR02356        80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLIS  141 (202)
T ss_pred             HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999887655 568899999999999999999999999999999984

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=2.9e-34  Score=249.95  Aligned_cols=136  Identities=22%  Similarity=0.314  Sum_probs=128.6

Q ss_pred             cchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587         100 TLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus       100 rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ||+||+++  ||.++  +++.++|+|+||||+||++|++|+++|||+|+|+|+|.|+++|| +||+++..+|+|++|+++
T Consensus         1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~   79 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL-QRQILHTEADVGQPKAEA   79 (228)
T ss_pred             CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc-ccccccChhhCCChHHHH
Confidence            69999999  99877  56778999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++|+++||+++|+.++..++..+ .++++++|+||+|+|+..++..++++|+++++|+|+
T Consensus        80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~  141 (228)
T cd00757          80 AAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVS  141 (228)
T ss_pred             HHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999998886654 568899999999999999999999999999999984

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=5.4e-34  Score=251.39  Aligned_cols=138  Identities=17%  Similarity=0.253  Sum_probs=129.6

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+.+  ||.++  +++.++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|| +||++++.+|||++|+
T Consensus        10 ~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~Ka   88 (245)
T PRK05690         10 MLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL-QRQVLHDDATIGQPKV   88 (245)
T ss_pred             HHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh-hhhhcCChhhCCChHH
Confidence            4689999976  88766  56778999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||+++|+.+...+++.+ .+++++||+||+|+|+.+.+.+++++|+++++|+|.
T Consensus        89 ~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~  152 (245)
T PRK05690         89 ESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVS  152 (245)
T ss_pred             HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence            999999999999999999999988765 568899999999999999999999999999999984

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=5.5e-34  Score=256.11  Aligned_cols=137  Identities=14%  Similarity=0.142  Sum_probs=130.3

Q ss_pred             ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587          99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS  176 (236)
Q Consensus        99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~  176 (236)
                      .+|.||+.++|.++  +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +||++++.+|||++|++++
T Consensus         8 ~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNL-nRQ~l~~~~diG~~Kve~a   86 (287)
T PRK08223          8 EAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF-NRQAGAMMSTLGRPKAEVL   86 (287)
T ss_pred             HHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcc-ccccCcChhHCCCcHHHHH
Confidence            57999999999887  56788999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCH--HHHHHHHHHHHHcCCcEEC
Q psy9587         177 EARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNP--NQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       177 ~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~--~~r~~In~~c~~~~ip~I~  236 (236)
                      +++|+++||.++|++++..+++.+ .+++++||+||||+|++  .+++++|+.|++++||+|+
T Consensus        87 ~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~  149 (287)
T PRK08223         87 AEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALT  149 (287)
T ss_pred             HHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999998876 67899999999999986  8999999999999999984

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=1.2e-33  Score=248.59  Aligned_cols=137  Identities=16%  Similarity=0.236  Sum_probs=128.4

Q ss_pred             ccchhhhhcccC--cc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587          99 VTLTTLHTNWAG--SQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK  174 (236)
Q Consensus        99 ~rydrq~~l~g~--~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae  174 (236)
                      .||+||+.+|+.  ++  +++.++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|| +||+++..+|||++||+
T Consensus         3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~RQ~l~~~~diG~~Ka~   81 (240)
T TIGR02355         3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL-QRQVLHSDANIGQPKVE   81 (240)
T ss_pred             cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc-ccceeeeHhhCCCcHHH
Confidence            589999999874  33  57788999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         175 SSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       175 a~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++|+++||+++|+.+...+++.+ .++++++|+||+|+|+.+++.+|+++|+++++|+|+
T Consensus        82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~  144 (240)
T TIGR02355        82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVS  144 (240)
T ss_pred             HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999888755 678899999999999999999999999999999984

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=2.4e-33  Score=259.23  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=131.3

Q ss_pred             ccccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH
Q psy9587          97 HTVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR  172 (236)
Q Consensus        97 ~~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K  172 (236)
                      +..||+||+++  ||.++  +++.++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+++++|+|++|
T Consensus         5 ~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~K   83 (355)
T PRK05597          5 DIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL-HRQVIHSTAGVGQPK   83 (355)
T ss_pred             HHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc-ccCcccChhHCCChH
Confidence            34689999999  99887  56778999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++++|+++||+++|+++...++..+ .+++++||+||+|+|+..+|..++++|++++||+|+
T Consensus        84 a~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~  148 (355)
T PRK05597         84 AESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVW  148 (355)
T ss_pred             HHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999888655 678999999999999999999999999999999984

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=3.5e-33  Score=260.97  Aligned_cols=138  Identities=17%  Similarity=0.199  Sum_probs=130.8

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+.+  ||.++  +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||
T Consensus        16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL-~RQ~l~~~~dvG~~Ka   94 (390)
T PRK07411         16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL-QRQVIHGTSWVGKPKI   94 (390)
T ss_pred             HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc-CcCcccChHHCCCcHH
Confidence            4689999999  88876  56788999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||.++|+.+...++..+ .+++++||+||+|+|+.++|..||++|++.++|+|+
T Consensus        95 ~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~  158 (390)
T PRK07411         95 ESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVY  158 (390)
T ss_pred             HHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999999998765 678999999999999999999999999999999984

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=9.2e-33  Score=241.55  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=129.4

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCC-hHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK-NRAK  174 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk-~Kae  174 (236)
                      ..||+||+++||.++  +++.++|+|+||||+||+++++|+++|||+|+|+|+|.++.+|| +||+++..+|+|+ +|++
T Consensus         7 ~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~~k~~   85 (231)
T PRK08328          7 LERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNL-NRQILHWEEDLGKNPKPL   85 (231)
T ss_pred             HHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhh-ccccccChhhcCchHHHH
Confidence            368999999999887  56778999999999999999999999999999999999999999 9999999999999 5999


Q ss_pred             HHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         175 SSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       175 a~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++|+++||+++|+.+...+++.+ .++++++|+||+|+|+..++..++++|+++++|+|.
T Consensus        86 ~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~  148 (231)
T PRK08328         86 SAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVH  148 (231)
T ss_pred             HHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999998887665 568899999999999999999999999999999984

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.98  E-value=1.3e-32  Score=257.19  Aligned_cols=138  Identities=16%  Similarity=0.198  Sum_probs=130.1

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+.+  ||.++  +++.++|+||||||+|+++|++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++|+
T Consensus        20 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka   98 (392)
T PRK07878         20 VARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL-QRQVIHGQSDVGRSKA   98 (392)
T ss_pred             HHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc-ccccccChhcCCChHH
Confidence            4689999988  98877  46778999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||+++|+.+...++..+ .+++++||+||+|+|+..++.+||++|+++++|+|+
T Consensus        99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~  162 (392)
T PRK07878         99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVW  162 (392)
T ss_pred             HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999999888755 678999999999999999999999999999999984

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.98  E-value=1.3e-32  Score=255.56  Aligned_cols=138  Identities=14%  Similarity=0.216  Sum_probs=130.8

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+++  ||.++  +++.++|+|+||||+|++++++|+++|||+|+|+|+|.|+++|| +||++++.+|||++|+
T Consensus        19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL-~RQ~l~~~~diG~~Ka   97 (370)
T PRK05600         19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI-HRQILFGASDVGRPKV   97 (370)
T ss_pred             HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc-cccccCChhHCCCHHH
Confidence            4689999999  99877  56778999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||+++|+.+...+++.+ .++++++|+||+|+|+..+|..||++|+++++|+|+
T Consensus        98 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~  161 (370)
T PRK05600         98 EVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVW  161 (370)
T ss_pred             HHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999999998765 578999999999999999999999999999999984

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=99.98  E-value=1.4e-32  Score=247.38  Aligned_cols=133  Identities=34%  Similarity=0.439  Sum_probs=125.9

Q ss_pred             cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH
Q psy9587         100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE  177 (236)
Q Consensus       100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~  177 (236)
                      .|+||+++||.++  +++.++|+|+||||+|+|+||||+++||++|+|+|+|.++.+|| +|||+++++|||++||++++
T Consensus         1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL-~rqf~~~~~dIGk~Kaea~~   79 (286)
T cd01491           1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKNRAEASQ   79 (286)
T ss_pred             CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc-ccCccCChHHhCHHHHHHHH
Confidence            3899999999987  56778999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         178 ARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       178 ~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++|+++||+++|+++...+   +.+++++||+||+|.++...+..||++|++++||||.
T Consensus        80 ~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~  135 (286)
T cd01491          80 ARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFIS  135 (286)
T ss_pred             HHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEE
Confidence            9999999999999998775   3468899999999999999999999999999999984

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.97  E-value=2.9e-31  Score=236.94  Aligned_cols=137  Identities=17%  Similarity=0.236  Sum_probs=127.5

Q ss_pred             ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587          99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS  176 (236)
Q Consensus        99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~  176 (236)
                      .+|+||.++||.++  +++.++|+|+|+||+||++|++|+++|||+|+|+|+|.++.+|+ |||+++..+++|++|++++
T Consensus        11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl-nRQ~~~~~~~vG~~Kve~~   89 (268)
T PRK15116         11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT-NRQIHALRDNVGLAKAEVM   89 (268)
T ss_pred             HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc-ccccccChhhcChHHHHHH
Confidence            58999999999987  67889999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHhhCCCceEEEEecCCCcch-hhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         177 EARAQNLNPNVEVTSNETKVDEIS-EEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       177 ~~~L~~inp~v~I~~~~~~l~~~~-~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++.++||+++|+.+...++..+ .+++ .+||+||+|.|+...+..|+++|+++++|+|.
T Consensus        90 ~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~  151 (268)
T PRK15116         90 AERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVT  151 (268)
T ss_pred             HHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999988777555 4455 47999999999999999999999999999983

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.97  E-value=7e-31  Score=210.87  Aligned_cols=121  Identities=31%  Similarity=0.478  Sum_probs=111.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      |.++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|+ +||++++.+|+|++|+++++++|+++||+++++.++.
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL-NRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC-CTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc-ccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            357899999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .+++.+ .++++++|+||+|+|+...+..|+++|+++++|+|+
T Consensus        80 ~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~  122 (135)
T PF00899_consen   80 KIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFID  122 (135)
T ss_dssp             HCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred             ccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence            996554 677899999999999999999999999999999984

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=99.97  E-value=3.5e-31  Score=243.46  Aligned_cols=137  Identities=18%  Similarity=0.198  Sum_probs=127.4

Q ss_pred             ccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC--ChH
Q psy9587          99 VTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNR  172 (236)
Q Consensus        99 ~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG--k~K  172 (236)
                      .||+||+++  ||.++  +++.++|+||||||+|+++|++|+++|||+|+|+|+|.|+.+|| +||++++++|+|  ++|
T Consensus         3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL-~RQ~l~~~~d~~~g~~K   81 (338)
T PRK12475          3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL-QRQQLYTEEDAKQKKPK   81 (338)
T ss_pred             chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc-CccccccHHHccCCccH
Confidence            589999987  67766  56778999999999999999999999999999999999999999 999999999985  899


Q ss_pred             HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      |++++++|+++||+++|+++...++..+ .++++++|+||+|+|+.+++..||++|+++++|+|+
T Consensus        82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~  146 (338)
T PRK12475         82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIY  146 (338)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999998887554 667899999999999999999999999999999985

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=99.97  E-value=3.4e-31  Score=243.57  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=128.6

Q ss_pred             ccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC--ChH
Q psy9587          99 VTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNR  172 (236)
Q Consensus        99 ~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG--k~K  172 (236)
                      .||+||+.+  ||.++  +++.++|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +||+++.++|+|  ++|
T Consensus         3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL-~RQ~l~~~~dig~g~~K   81 (339)
T PRK07688          3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL-QRQQLYTESDVKNNLPK   81 (339)
T ss_pred             chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc-CccccccHHHhcCCCcH
Confidence            589999988  88877  56778999999999999999999999999999999999999999 999999999994  699


Q ss_pred             HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++++|+++||.++++.+...+++.+ .+++++||+||+|+|+..++..|+++|++++||+|+
T Consensus        82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~  146 (339)
T PRK07688         82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIY  146 (339)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence            9999999999999999999999887765 678899999999999999999999999999999985

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.97  E-value=5.4e-31  Score=248.43  Aligned_cols=136  Identities=26%  Similarity=0.380  Sum_probs=127.8

Q ss_pred             cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH
Q psy9587         100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE  177 (236)
Q Consensus       100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~  177 (236)
                      |||||+|+||..+  .+..++|+||||||+|+|++|||+++|||+|+|+|+|.|+.+|| +||||++.+|+|++||++++
T Consensus         2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL-~~nFfl~~~diGk~kA~~~~   80 (425)
T cd01493           2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDL-GNNFFLDASSLGKSRAEATC   80 (425)
T ss_pred             cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhc-cccccCChhhcCcHHHHHHH
Confidence            7999999999988  46778999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHhhCCCceEEEEecCCCc---chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         178 ARAQNLNPNVEVTSNETKVDE---ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       178 ~~L~~inp~v~I~~~~~~l~~---~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +.|+++||+|+++.+.+.+.+   .+.+++++||+||+|.++......|+++|++.+||+|+
T Consensus        81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~  142 (425)
T cd01493          81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLY  142 (425)
T ss_pred             HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999887653   34789999999999999999999999999999999984

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=99.97  E-value=1.6e-30  Score=228.09  Aligned_cols=117  Identities=19%  Similarity=0.289  Sum_probs=111.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|||+||+||+++++|+++|+|+|+|+|+|.|+.+|| +|||||+.+|+|++|+++++++++++||+++|+.+...+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL-nRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh-ccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            489999999999999999999999999999999999999 9999999999999999999999999999999999999885


Q ss_pred             c---chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         198 E---ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~---~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +   .+.+++++||+||+|.|+.++|.+++++|+.+++|+|
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI  120 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLI  120 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence            3   3467899999999999999999999999999999997

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14851 hypothetical protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=255.39  Aligned_cols=139  Identities=15%  Similarity=0.166  Sum_probs=130.7

Q ss_pred             ccccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587          97 HTVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK  174 (236)
Q Consensus        97 ~~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae  174 (236)
                      ...+|+||+.+|+.++  +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| |||++++.+|||++|++
T Consensus        22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNL-NRQ~~~~~~dvG~~Kv~  100 (679)
T PRK14851         22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNV-NRQFGARVPSFGRPKLA  100 (679)
T ss_pred             HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEeccccc-ccCcCcChhhCCCHHHH
Confidence            4578999999999876  57789999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcCCcEEC
Q psy9587         175 SSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCN--PNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       175 a~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++|.++||.++|++++..+++.+ .++++++|+||+|+|+  ...+..|++.|++++||+|+
T Consensus       101 v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~  165 (679)
T PRK14851        101 VMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVIT  165 (679)
T ss_pred             HHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence            99999999999999999999998876 6789999999999997  56889999999999999984

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=99.96  E-value=1.2e-29  Score=228.89  Aligned_cols=117  Identities=24%  Similarity=0.307  Sum_probs=111.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|| +|||||+.+|||++||++++++|+++||+++|+++...+.
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNL-nRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNL-NRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccc-CcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            489999999999999999999999999999999999999 9999999999999999999999999999999999999998


Q ss_pred             cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHc--------CCcEE
Q psy9587         198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK--------SKISL  235 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~--------~ip~I  235 (236)
                      +.+.+++++||+||+|.|+.++|.+|++.|.+.        ++|+|
T Consensus        80 ~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI  125 (291)
T cd01488          80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLI  125 (291)
T ss_pred             chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEE
Confidence            877889999999999999999999999998765        48987

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.96  E-value=2.4e-29  Score=203.39  Aligned_cols=118  Identities=31%  Similarity=0.409  Sum_probs=112.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+||||+|++++++|+++|+++|+|+|+|.++++|| +||++++.+|+|++|+++++++++++||+++++.+...+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL-NRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh-hccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            479999999999999999999999999999999999999 9999999999999999999999999999999999998877


Q ss_pred             cch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         198 EIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       198 ~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ..+ .++++++|+||+|.|+.+.+..++++|+++++|+|.
T Consensus        80 ~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~  119 (143)
T cd01483          80 EDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVID  119 (143)
T ss_pred             hhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            644 678899999999999999999999999999999973

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.96  E-value=8.6e-30  Score=236.80  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=128.9

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..+|+||+.+  ||.++  +++.++|+|+||||+|++++++|+++||++|+|+|+|.|+.+|| +||++++.+|||++|+
T Consensus       113 ~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl-~Rq~l~~~~diG~~Ka  191 (376)
T PRK08762        113 DERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNL-QRQILHTEDRVGQPKV  191 (376)
T ss_pred             HHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhh-ccccccchhhCCCcHH
Confidence            4689999988  88765  56778999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||+++++.+...+++.+ .++++++|+||+|+|+..++.+++++|++++||+|+
T Consensus       192 ~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~  255 (376)
T PRK08762        192 DSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVY  255 (376)
T ss_pred             HHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999998887655 567899999999999999999999999999999984

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.96  E-value=1.3e-29  Score=221.97  Aligned_cols=123  Identities=21%  Similarity=0.275  Sum_probs=114.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++.++|+|+||||+||+++++|+++|||+|+|+|+|.|+++|| |||+++..+|+|++|+++++++|+++||+++|+.+
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl-nRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL-NRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh-cchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            45778999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             ecCCCcch-hhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         193 ETKVDEIS-EEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       193 ~~~l~~~~-~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ...+++.+ .+++ .+||+||+|.|+...+..|+++|+++++|+|.
T Consensus        87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~  132 (231)
T cd00755          87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVIS  132 (231)
T ss_pred             eeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence            99888655 4454 57999999999999999999999999999984

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=99.96  E-value=2e-29  Score=229.36  Aligned_cols=118  Identities=20%  Similarity=0.381  Sum_probs=112.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|||+||+|||++++|+++|+|+|+|+|+|.++.+|| +|||+++++|||++||++++++|+++||+++|+++...+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNL-nRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNL-NRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhc-CcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            489999999999999999999999999999999999999 9999999999999999999999999999999999998887


Q ss_pred             cc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         198 EI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       198 ~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +.  +.+++++||+||+|.|+.++|..++++|+.++||+|.
T Consensus        80 ~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~  120 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIE  120 (312)
T ss_pred             CccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
Confidence            63  4689999999999999999999999999999999983

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.96  E-value=9.6e-30  Score=260.04  Aligned_cols=137  Identities=21%  Similarity=0.294  Sum_probs=129.1

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCC-----ceEEEeeCCcccccCCCCCccccCCCcCCC
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGK  170 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GV-----g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk  170 (236)
                      ..||+||+++||.++  +++.++|+||||||+||+++++|+++||     |+|+|+|+|.|+.+|| ||||||+.+|||+
T Consensus       399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL-nRQfLf~~~dIGk  477 (1008)
T TIGR01408       399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL-NRQFLFRPHHIGK  477 (1008)
T ss_pred             hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc-CcCcCCChhHcCc
Confidence            479999999999887  5677899999999999999999999999     8999999999999999 9999999999999


Q ss_pred             hHHHHHHHHHHhhCCCceEEEEecCCCcc-----hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         171 NRAKSSEARAQNLNPNVEVTSNETKVDEI-----SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       171 ~Kaea~~~~L~~inp~v~I~~~~~~l~~~-----~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +||++++++++++||+++|+++...+.+.     +.++++++|+||+|.|+..+|.++++.|+.+++|+|
T Consensus       478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli  547 (1008)
T TIGR01408       478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLL  547 (1008)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence            99999999999999999999999888653     256889999999999999999999999999999997

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=99.96  E-value=2.1e-29  Score=222.29  Aligned_cols=138  Identities=25%  Similarity=0.264  Sum_probs=130.7

Q ss_pred             cccchhhhhcccCcc----ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTNWAGSQ----SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l~g~~~----~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+.+|+...    +++.++|+|+|+||+|++++++|+++|+|+++|+|+|.|+.+|| +||++++.+|+|++|+
T Consensus         8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL-~rq~~~~~~dig~~Ka   86 (254)
T COG0476           8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNL-QRQFLFTEADVGKPKA   86 (254)
T ss_pred             HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCccccccc-CceeeecccccCCcHH
Confidence            468999999988764    56788999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++.++++||.++++.+...++..+ .++++++|+|++|+|+..+|..+|++|++.++|++.
T Consensus        87 ~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~  150 (254)
T COG0476          87 EVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVH  150 (254)
T ss_pred             HHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEe
Confidence            999999999999999999999998877 588999999999999999999999999999999973

>PRK14852 hypothetical protein; Provisional

Probab=99.96  E-value=2.2e-29  Score=254.17  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=129.0

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ..+|+||+.+||.++  +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| |||++++.+|||++|+++
T Consensus       312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNL-NRQ~l~~~~dIG~~Kaev  390 (989)
T PRK14852        312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL-NRQYGASIASFGRGKLDV  390 (989)
T ss_pred             HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEeccccc-ccccCCChhhCCChHHHH
Confidence            468999999999887  57789999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCH--HHHHHHHHHHHHcCCcEEC
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNP--NQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~--~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++|+++||+++|+++...+++.+ .++++++|+||+|+|+.  ..+..+++.|++++||+|.
T Consensus       391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~  454 (989)
T PRK14852        391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVIT  454 (989)
T ss_pred             HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999998766 67899999999999974  5678888999999999984

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.96  E-value=7.5e-29  Score=214.48  Aligned_cols=134  Identities=21%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             chhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHH
Q psy9587         101 LTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEA  178 (236)
Q Consensus       101 ydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~  178 (236)
                      ++++...||.++  +++.++|+|+||||+|++++++|+++|+++|+|+|.|.|+.+|| +||+++ .+|+|++|++++++
T Consensus        11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~~~-~~dvG~~Ka~~a~~   88 (212)
T PRK08644         11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNL-NRQQYF-ISQIGMPKVEALKE   88 (212)
T ss_pred             HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccc-cccEee-hhhCCChHHHHHHH
Confidence            444555577666  56778999999999999999999999999999999999999999 999866 78999999999999


Q ss_pred             HHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCcEEC
Q psy9587         179 RAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKISLF  236 (236)
Q Consensus       179 ~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip~I~  236 (236)
                      +|+++||+++++.+...+++.+ .++++++|+||+|+|+..++..+++.|+++ ++|+|+
T Consensus        89 ~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~  148 (212)
T PRK08644         89 NLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVA  148 (212)
T ss_pred             HHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            9999999999999999888765 478899999999999999999999999999 999984

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.96  E-value=3.9e-29  Score=255.59  Aligned_cols=135  Identities=28%  Similarity=0.411  Sum_probs=127.7

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ..+|+||+++||.++  +++.++|+|+||||+|+|+|+||+++|||+|+|+|+|.|+.+|| +||||++++|||++||++
T Consensus         4 ~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL-~rQf~~~~~dIGk~Kaea   82 (1008)
T TIGR01408         4 EALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDL-SSNFFLSEDDVGRNRAEA   82 (1008)
T ss_pred             HhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhC-CCceecchHHcCchHHHH
Confidence            467999999999987  56778999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC--CcEEC
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKS--KISLF  236 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~--ip~I~  236 (236)
                      ++++|+++||+|+|+++...++   .+++++||+||+|.++...+..||++|++++  ||||+
T Consensus        83 ~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~  142 (1008)
T TIGR01408        83 VVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFIS  142 (1008)
T ss_pred             HHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            9999999999999999988774   4689999999999999999999999999999  88984

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK07877 hypothetical protein; Provisional

Probab=99.96  E-value=4.7e-29  Score=247.56  Aligned_cols=137  Identities=20%  Similarity=0.262  Sum_probs=129.3

Q ss_pred             ccccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          97 HTVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        97 ~~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ...||+||..+||.++  +++.++|+||||| +||.+|.+|+++|| |+|+|+|+|.|+.+|| ||| +++.+|+|++|+
T Consensus        86 ~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNL-nRq-~~~~~diG~~Kv  162 (722)
T PRK07877         86 RAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNL-NRV-PAGVFDLGVNKA  162 (722)
T ss_pred             hHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEccccc-ccc-cCChhhcccHHH
Confidence            3489999999999887  5678899999997 99999999999996 9999999999999999 998 689999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|.++||+++|+++...+++.+ .++++++|+||||+|++.++..||+.|++++||+|+
T Consensus       163 ~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~  226 (722)
T PRK07877        163 VVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLM  226 (722)
T ss_pred             HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999999999877 678899999999999999999999999999999985

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.96  E-value=4e-29  Score=218.05  Aligned_cols=137  Identities=21%  Similarity=0.298  Sum_probs=128.7

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ..+|.|..+|+|.++  +++.++|+|+|+|||||+++..|+++|+|+|+|+|.|.|+.+|+ |||.-....+||++|+++
T Consensus        10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~-NRQi~A~~~~iGk~Kv~v   88 (263)
T COG1179          10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT-NRQIHALLGDIGKPKVEV   88 (263)
T ss_pred             HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc-chhhHhhhhhcccHHHHH
Confidence            357888889999877  78999999999999999999999999999999999999999999 999888889999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcch-hhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEIS-EEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ++++++.+||+++|+.+...+++++ .+++ .+||+||||.|+...+..|..+|++++||+|
T Consensus        89 m~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vI  150 (263)
T COG1179          89 MKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVI  150 (263)
T ss_pred             HHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999999999887 5554 5799999999999999999999999999997

>KOG2017|consensus

Probab=99.95  E-value=2.6e-29  Score=227.85  Aligned_cols=138  Identities=20%  Similarity=0.208  Sum_probs=129.1

Q ss_pred             ccccchhhhhccc--Ccc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH
Q psy9587          97 HTVTLTTLHTNWA--GSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR  172 (236)
Q Consensus        97 ~~~rydrq~~l~g--~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K  172 (236)
                      ...||+||+-+-+  ..|  +++.+.|+||||||+||.++.+|+.+|||+|.|+|.|.||.+|| +||.+++++.+|+.|
T Consensus        43 ei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNl-hRQVlh~ea~vg~~K  121 (427)
T KOG2017|consen   43 EILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNL-HRQVLHTEARVGMHK  121 (427)
T ss_pred             HHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhH-HHHHhhhhhhhhhHH
Confidence            3579999996644  344  46778999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      |++++..++++||.++|+.+.+.++..+ .+++++||+|.||+||+.+|++|++.|...|+|+|
T Consensus       122 a~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLV  185 (427)
T KOG2017|consen  122 AESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLV  185 (427)
T ss_pred             HHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccc
Confidence            9999999999999999999999998877 78899999999999999999999999999999987

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.95  E-value=3e-28  Score=229.84  Aligned_cols=117  Identities=25%  Similarity=0.355  Sum_probs=111.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-----ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-----g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +|+||||||+|||++++|+++||     |+|+|+|+|.|+.+|| +|||+|+.+|||++||+++++.++++||+++|+++
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL-nRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~   79 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL-NRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc-CcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence            48999999999999999999999     9999999999999999 99999999999999999999999999999999999


Q ss_pred             ecCCCcch-----hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKVDEIS-----EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l~~~~-----~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ...+.+.+     .++++++|+||+|.|+.++|..+++.|+.+++|+|
T Consensus        80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli  127 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLL  127 (435)
T ss_pred             ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence            98886532     46889999999999999999999999999999997

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.95  E-value=7.1e-28  Score=217.45  Aligned_cols=117  Identities=22%  Similarity=0.304  Sum_probs=108.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCc--CCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED--IGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~d--IGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      +|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|| +||++|..+|  +|++||++++++|+++||+++++.+...
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL-~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNP-VRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccC-CcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            489999999999999999999999999999999999999 9999999999  9999999999999999999999998755


Q ss_pred             C-----------------Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 V-----------------DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l-----------------~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +                 +..+ .++++++|+||+|+|+.++|+.++.+|..+++|+|
T Consensus        80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I  137 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVI  137 (307)
T ss_pred             ccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEE
Confidence            4                 1112 56789999999999999999999999999999987

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.95  E-value=2.3e-27  Score=199.37  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=108.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+||||+|++++++|+++|+++|+|+|.|.++.+|| +||++ ..+|+|++|+++++++|+++||+++++.+...++
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl-~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNL-NRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcch-hcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            489999999999999999999999999999999999999 99985 4689999999999999999999999999999887


Q ss_pred             cch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCcEEC
Q psy9587         198 EIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKISLF  236 (236)
Q Consensus       198 ~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip~I~  236 (236)
                      ..+ .++++++|+||+|+|+...+..+++.|.+. ++|+|+
T Consensus        79 ~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~  119 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVC  119 (174)
T ss_pred             hhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            755 578999999999999999999888887777 999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.94  E-value=5.2e-27  Score=228.57  Aligned_cols=122  Identities=22%  Similarity=0.343  Sum_probs=114.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC---CChHHHHHHHHHHhhCCCceE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI---Gk~Kaea~~~~L~~inp~v~I  189 (236)
                      +++..+|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +||++|+.+|+   |++||++++++|+++||++++
T Consensus       335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL-~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i  413 (664)
T TIGR01381       335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP-VRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQA  413 (664)
T ss_pred             HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc-ccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEE
Confidence            67889999999999999999999999999999999999999999 99999999999   999999999999999999999


Q ss_pred             EEEecCC-------Ccc----------h-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         190 TSNETKV-------DEI----------S-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       190 ~~~~~~l-------~~~----------~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.+...+       ++.          + .++++++|+||+|+|+.++|+.++.+|..+++|+|
T Consensus       414 ~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI  477 (664)
T TIGR01381       414 TGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI  477 (664)
T ss_pred             EEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence            9987763       331          2 46789999999999999999999999999999998

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK06153 hypothetical protein; Provisional

Probab=99.93  E-value=5.3e-26  Score=211.04  Aligned_cols=120  Identities=14%  Similarity=0.132  Sum_probs=112.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCcc-ccCCCcCCC--hHHHHHHHHHHhhCCCceE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF-LAPHEDIGK--NRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~-l~~~~dIGk--~Kaea~~~~L~~inp~v~I  189 (236)
                      +++.++|+||||||+||.++..|+++||++|+|+|+|.|+++|| +||+ ++..+|+|+  +|++++++++.++++  .|
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNL-nRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--~I  249 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNA-FRSPGAASIEELREAPKKVDYFKSRYSNMRR--GI  249 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccc-ccccccCCHhHcCCcchHHHHHHHHHHHhCC--eE
Confidence            56788999999999999999999999999999999999999999 9998 568899999  999999999999998  56


Q ss_pred             EEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         190 TSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       190 ~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.+...+++.+...+++||+||+|+|+.++|..|+++|.+++||+|
T Consensus       250 ~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~I  295 (393)
T PRK06153        250 VPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFI  295 (393)
T ss_pred             EEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence            7788888777766789999999999999999999999999999997

>KOG2014|consensus

Probab=99.93  E-value=3e-26  Score=204.64  Aligned_cols=137  Identities=35%  Similarity=0.485  Sum_probs=131.4

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ...||||+||||...  .++.++|+|+|.+|+|+|++|||+++|||+++++|+-.|.++++ +.|||...+++|+.|+++
T Consensus        11 ~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~-~~qFli~~~~vg~~raea   89 (331)
T KOG2014|consen   11 IALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDV-GAQFLISASSVGQTRAEA   89 (331)
T ss_pred             HHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcC-CceeEEchhhhchHHHHH
Confidence            456999999999877  46778999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..++++.+||.|+|....+.+.+.+.+++.+||+||....+.+....+|++||+++|+|+
T Consensus        90 s~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~  149 (331)
T KOG2014|consen   90 SLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFY  149 (331)
T ss_pred             HHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEE
Confidence            999999999999999999999999999999999999999999999999999999999986

>KOG2013|consensus

Probab=99.93  E-value=1.8e-26  Score=216.15  Aligned_cols=121  Identities=21%  Similarity=0.364  Sum_probs=115.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++..+||||||||||||++|+|++.|+++|+|||-|+|+.||| ||||||+.++||++||.++++..++.||.+++..++
T Consensus        10 i~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNL-NRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yh   88 (603)
T KOG2013|consen   10 IKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNL-NRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYH   88 (603)
T ss_pred             hccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccch-hhhheeehhhcCchHHHHHHHHHHHhCCCCceEecc
Confidence            3567899999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             cCCCcc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..+.+.  +.+++.+||+|+.|.||..+|..+|++|.....|+|
T Consensus        89 anI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLI  132 (603)
T KOG2013|consen   89 ANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLI  132 (603)
T ss_pred             ccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCce
Confidence            998764  578999999999999999999999999999999987

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.93  E-value=8.6e-26  Score=199.04  Aligned_cols=113  Identities=29%  Similarity=0.402  Sum_probs=100.6

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ..+|+||+++||.++  +++.++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+|| +|||+++. ++|++|+++
T Consensus         6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL-~RQfl~~~-dvGk~KAea   83 (287)
T PTZ00245          6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADV-CTNYLMQG-EAGGTRGAR   83 (287)
T ss_pred             HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhh-cccccccc-ccCCcHHHH
Confidence            468999999999988  56778999999999999999999999999999999999999999 99999997 689999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCH
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNP  217 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~  217 (236)
                      ++++|+++||+++|+.+...+++.     ++|++||.+..+.
T Consensus        84 Aa~~L~eLNP~V~V~~i~~rld~~-----n~fqvvV~~~~~l  120 (287)
T PTZ00245         84 ALGALQRLNPHVSVYDAVTKLDGS-----SGTRVTMAAVITE  120 (287)
T ss_pred             HHHHHHHHCCCcEEEEcccccCCc-----CCceEEEEEcccH
Confidence            999999999999999998877653     3566666555443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.93  E-value=4.1e-25  Score=189.66  Aligned_cols=119  Identities=17%  Similarity=0.267  Sum_probs=106.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++..+|+|+||||+|+++|++|+++|+++++|+|.|.|+++|| +||+ +..+|+|++|+++++++|+++||.++++.+
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~   95 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNL-NRQQ-YKASQVGEPKTEALKENISEINPYTEIEAY   95 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccc-cccc-CChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence            46778999999999999999999999999999999999999999 9996 566899999999999999999999999999


Q ss_pred             ecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHH-HHcCCc
Q psy9587         193 ETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFC-RSKSKI  233 (236)
Q Consensus       193 ~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c-~~~~ip  233 (236)
                      ...+++.+ .++++++|+||+|+|+..++..+.+.| +..+.+
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~  138 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDK  138 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCC
Confidence            99998766 567899999999999999998865554 454443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2015|consensus

Probab=99.91  E-value=9.3e-25  Score=196.91  Aligned_cols=114  Identities=20%  Similarity=0.280  Sum_probs=109.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ...+|+|+|+||+|||++|+|+++|++.++++|.|+++.+|| ||||+|++.|+|++||+++|+.+.+..|.+.|..+..
T Consensus        39 ~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNL-NRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~  117 (422)
T KOG2015|consen   39 QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNL-NRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQ  117 (422)
T ss_pred             hhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccc-hhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeec
Confidence            346899999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      ++.+...+++++||+||++.|+.+.|++||.+..+
T Consensus       118 kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~  152 (422)
T KOG2015|consen  118 KIQDKPISFYKRFDLIICGLDSIEARRWINGMLVR  152 (422)
T ss_pred             chhcCCHHHHhhhceEEecccchhHHHHHHHHHHH
Confidence            99999999999999999999999999999998765

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.91  E-value=3.2e-24  Score=189.26  Aligned_cols=110  Identities=17%  Similarity=0.161  Sum_probs=100.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-----c-----eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-----K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN  184 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-----g-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in  184 (236)
                      +..+|+||||||+||+++++|+++|+     |     +|+|+|+|.|+++|| +|| +|...|||++||+++++++.+++
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL-nRQ-lf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV-GRQ-AFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh-hcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence            55789999999999999999999973     4     899999999999999 999 57779999999999999999988


Q ss_pred             CCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         185 PNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       185 p~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                       .++|+++...+.+  .+++.++|+||+|+|+.++|..|++.|.+
T Consensus        88 -~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~  129 (244)
T TIGR03736        88 -GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEG  129 (244)
T ss_pred             -CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence             8999999988876  23467899999999999999999999988

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.89  E-value=1.1e-23  Score=192.32  Aligned_cols=124  Identities=16%  Similarity=0.146  Sum_probs=111.4

Q ss_pred             cccchhhhhccc---Cc-c--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh
Q psy9587          98 TVTLTTLHTNWA---GS-Q--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN  171 (236)
Q Consensus        98 ~~rydrq~~l~g---~~-~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~  171 (236)
                      ..||.||+.+.+   .. +  +++.++|+   |||+|+.++.+|++ |||+|+|+|+|.|+.+|| +  ++|+.+|||++
T Consensus        52 ~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL-~--~L~~~~diG~~  124 (318)
T TIGR03603        52 LITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAE-I--DLYSKEFILKK  124 (318)
T ss_pred             HHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhH-H--HHhChhhcCcH
Confidence            469999998844   33 3  45667777   99999999999999 999999999999999999 7  89999999999


Q ss_pred             HHHHHHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHH--HHHHHHHcCCcEEC
Q psy9587         172 RAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIK--IDDFCRSKSKISLF  236 (236)
Q Consensus       172 Kaea~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~--In~~c~~~~ip~I~  236 (236)
                      |+++++++|.++||.++++..        .++++++|+||+|+|++.+|..  +|++|.+.++|+|+
T Consensus       125 K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~  183 (318)
T TIGR03603       125 DIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTI  183 (318)
T ss_pred             HHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEE
Confidence            999999999999999999763        3578999999999999999966  99999999999984

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>KOG2018|consensus

Probab=99.89  E-value=1.2e-23  Score=189.35  Aligned_cols=135  Identities=15%  Similarity=0.181  Sum_probs=123.7

Q ss_pred             cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH
Q psy9587         100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE  177 (236)
Q Consensus       100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~  177 (236)
                      .+.|....+|.++  +++.+-|.||||||+||+++..|+++|+++|.|+|+|-|+.+.| |||....-.|||.||+.+++
T Consensus        56 qLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSL-NrHs~Atl~DVG~PK~~clk  134 (430)
T KOG2018|consen   56 QLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSL-NRHSCATLADVGTPKVMCLK  134 (430)
T ss_pred             HHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhh-hhhhhhhHhhcCCchHHHHH
Confidence            3556667788777  67888899999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHhhCCCceEEEEecCCCcch-hhh-cCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         178 ARAQNLNPNVEVTSNETKVDEIS-EEF-VHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       178 ~~L~~inp~v~I~~~~~~l~~~~-~~~-l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.++++.|+++|.+...-++..+ .++ +.+.|+|+||.||..+...|-++|+.+|+++|
T Consensus       135 kh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vi  194 (430)
T KOG2018|consen  135 KHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVI  194 (430)
T ss_pred             HHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceE
Confidence            99999999999999998887765 444 46799999999999999999999999999997

>KOG2012|consensus

Probab=99.89  E-value=1e-23  Score=207.12  Aligned_cols=136  Identities=21%  Similarity=0.262  Sum_probs=126.8

Q ss_pred             ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCc-----eEEEeeCCcccccCCCCCccccCCCcCCCh
Q psy9587          99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVK-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKN  171 (236)
Q Consensus        99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~  171 (236)
                      -|||-|++++|...  ++..+++.+||+|+||||++||++++|+|     +|++.|.|.||.||| ||||||++.|||++
T Consensus       411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNL-nRQFLFR~~dVgk~  489 (1013)
T KOG2012|consen  411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNL-NRQFLFRPWDVGKP  489 (1013)
T ss_pred             CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccc-cceeeccccccCch
Confidence            58999999999876  56678999999999999999999999995     799999999999999 99999999999999


Q ss_pred             HHHHHHHHHHhhCCCceEEEEecCCCcc-----hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         172 RAKSSEARAQNLNPNVEVTSNETKVDEI-----SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       172 Kaea~~~~L~~inp~v~I~~~~~~l~~~-----~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      |++++++....+||.++|+++..++...     +.+|+.+.|+|+.+.||..+|.++++.|..+.+|++
T Consensus       490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLL  558 (1013)
T KOG2012|consen  490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLL  558 (1013)
T ss_pred             HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchh
Confidence            9999999999999999999998887653     477899999999999999999999999999999974

>KOG2016|consensus

Probab=99.87  E-value=9.6e-23  Score=189.63  Aligned_cols=139  Identities=27%  Similarity=0.366  Sum_probs=127.7

Q ss_pred             ccccchhhhhcccCccc--cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587          97 HTVTLTTLHTNWAGSQS--YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK  174 (236)
Q Consensus        97 ~~~rydrq~~l~g~~~~--lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae  174 (236)
                      +..+||||+|+||..||  +..++|+++|||++||+++|||++.|||.|+++|+..|+.+|+ +.+|+...+++|++||+
T Consensus         6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~-g~nF~~~~~~~GksrA~   84 (523)
T KOG2016|consen    6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDL-GNNFFLDAKSIGKSRAE   84 (523)
T ss_pred             hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecch-hhHHHHHHHhhchhHHH
Confidence            45789999999998874  6778999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEEecCCC---cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         175 SSEARAQNLNPNVEVTSNETKVD---EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       175 a~~~~L~~inp~v~I~~~~~~l~---~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +..+.|+++||+|.-+...+..+   ..+++++++|++||.+.-+.++...+.++|+.+++|++.
T Consensus        85 a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~  149 (523)
T KOG2016|consen   85 ATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLL  149 (523)
T ss_pred             HHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEE
Confidence            99999999999999777665543   346889999999999999999999999999999999974

>KOG2012|consensus

Probab=99.86  E-value=3.3e-22  Score=196.62  Aligned_cols=134  Identities=34%  Similarity=0.443  Sum_probs=127.3

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ...|+||+-+.|.+.  ++..++|+|.|+||+|.||||||+++||+++||.|...+..+|| ..||+++++|||+++|++
T Consensus        17 E~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DL-ssqf~L~E~DigknRA~a   95 (1013)
T KOG2012|consen   17 ESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDL-SSQFYLSEEDIGKNRAEA   95 (1013)
T ss_pred             hhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhh-ccceeeeHHhcCCchHHH
Confidence            356999999999876  77889999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..++|+++|++|.|.++++.++   .+++++|++||.+..+.+....|+++||+++|.||
T Consensus        96 s~~~LaeLN~yV~V~v~t~~~~---~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi  152 (1013)
T KOG2012|consen   96 SVEKLAELNNYVPVVVLTGPLT---EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFI  152 (1013)
T ss_pred             HHHHHHHhhcceeeEEecCccc---HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEE
Confidence            9999999999999999998874   57999999999999999999999999999999987

>KOG2336|consensus

Probab=99.74  E-value=7e-18  Score=150.45  Aligned_cols=118  Identities=13%  Similarity=0.261  Sum_probs=104.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++...|.|||.||+||-+|..|.++|+|++.|+|.|.|+..|. ||- ||.++..|.+|++++...|..+||+|.++++
T Consensus        79 rIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANM-NRL-Ff~P~QaGlsKv~AA~~TL~~iNPDV~iE~h  156 (422)
T KOG2336|consen   79 RIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRL-FFQPDQAGLSKVDAAVQTLAEINPDVVIEVH  156 (422)
T ss_pred             HHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcc-ccc-ccCcccccchHHHHHHHHHHhcCCCeEEEEe
Confidence            56778899999999999999999999999999999999999999 997 7889999999999999999999999999999


Q ss_pred             ecCCCcc-h----------hhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCC
Q psy9587         193 ETKVDEI-S----------EEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       193 ~~~l~~~-~----------~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~i  232 (236)
                      +..++.- +          ..+.  +..|+|..|.||+++|..+|..|-+.+.
T Consensus       157 n~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q  209 (422)
T KOG2336|consen  157 NYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQ  209 (422)
T ss_pred             ecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhh
Confidence            8877531 1          1111  3489999999999999999999987653

>KOG2337|consensus

Probab=99.58  E-value=3.2e-15  Score=141.98  Aligned_cols=121  Identities=21%  Similarity=0.285  Sum_probs=104.4

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC---CChHHHHHHHHHHhhCCCceEE
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI---Gk~Kaea~~~~L~~inp~v~I~  190 (236)
                      ++..++++.|+|.+||.||++|+..||++||++|...|+.+|- .||.+|+.+|.   |++||++++++|++++|.++-+
T Consensus       338 is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNP-VRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~at  416 (669)
T KOG2337|consen  338 ISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNP-VRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEAT  416 (669)
T ss_pred             hhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccch-hhhhhhhhhhhhccCCcchHHHHHHHHHhCcccccc
Confidence            4557889999999999999999999999999999999999999 99999999996   5999999999999999999877


Q ss_pred             EEecCCC-------cc-----------hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         191 SNETKVD-------EI-----------SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       191 ~~~~~l~-------~~-----------~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+...+-       +.           -++++++.|+|+..+|+.++|++-.=+|...++-+|
T Consensus       417 G~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivI  479 (669)
T KOG2337|consen  417 GYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVI  479 (669)
T ss_pred             ceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEe
Confidence            7654331       11           145788999999999999999988877777666554

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.35  E-value=2.6e-12  Score=125.33  Aligned_cols=123  Identities=13%  Similarity=0.076  Sum_probs=100.1

Q ss_pred             cccchhhhhcccCc---c-----ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC
Q psy9587          98 TVTLTTLHTNWAGS---Q-----SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG  169 (236)
Q Consensus        98 ~~rydrq~~l~g~~---~-----~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG  169 (236)
                      ..||..|+..+...   +     ..+..+|+|+|.|++|+.++.+|+.+|+++|+.+|.|.+ .+|+ +|        ||
T Consensus       103 lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNl-nR--------Ig  172 (637)
T TIGR03693       103 LDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHAL-DR--------IH  172 (637)
T ss_pred             HHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhh-hH--------HH
Confidence            36888888666532   2     236689999999999999999999999999999999999 9999 99        77


Q ss_pred             ChHHHHHHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCC--CHHHHHHHHHHHHHcCCcEE
Q psy9587         170 KNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC--NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       170 k~Kaea~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I  235 (236)
                      +. ++.+++    .||.++++.++..-.+.-.+.++++|+||+.+|  +.....++|+.|.+.|+|+|
T Consensus       173 El-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I  235 (637)
T TIGR03693       173 EL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFI  235 (637)
T ss_pred             HH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence            75 544444    999999999876433334778999999999998  45678999999999995443

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.84  E-value=1.5e-08  Score=84.61  Aligned_cols=114  Identities=14%  Similarity=0.193  Sum_probs=95.4

Q ss_pred             ceEEEEcCChhHHHHHHHHH---HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         117 YVYSTGPLTRVGAEIAKNII---LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La---~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      -.|.++|||.+|--++-+|.   +.|+.+|.++|+..|++.|+-.|   .-...+|.+|++.+ ++|.+-.+.-+|++.+
T Consensus        19 GeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr---r~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~p   94 (217)
T COG4015          19 GEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR---RLGAKVGEYKVDFI-KRLGRVHFGRRVEAFP   94 (217)
T ss_pred             ceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH---HhCCCcchhHHHHH-HHhCcCCCCceeeccc
Confidence            36889999999999999998   67899999999999999998122   22356999999975 5677788888999999


Q ss_pred             cCCCcchhhhcCCCcEEEEcC---CCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATS---CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~---d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.++..|..++.+ |+|+.|.   |..+.-..|.++|++.|+.-|
T Consensus        95 E~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti  138 (217)
T COG4015          95 ENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI  138 (217)
T ss_pred             ccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe
Confidence            9999988888877 8887774   677888899999999998654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.16  E-value=1.9e-05  Score=74.44  Aligned_cols=93  Identities=18%  Similarity=0.186  Sum_probs=66.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|||+||+.+|.+|++.|.++|++.|...-.                    +    +++...... ++++..-+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~--------------------~----~~i~~~~~~-~v~~~~vD~   56 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEK--------------------C----ARIAELIGG-KVEALQVDA   56 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHH--------------------H----HHHHhhccc-cceeEEecc
Confidence            368999999999999999999999999998843211                    1    112111111 455554444


Q ss_pred             Ccc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+.  ..++++++|+||.|....... .+-+.|.+.|++++
T Consensus        57 ~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yv   96 (389)
T COG1748          57 ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYV   96 (389)
T ss_pred             cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEE
Confidence            332  257889999999998877666 77889999999875

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.07  E-value=2.3e-05  Score=70.76  Aligned_cols=76  Identities=14%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+.++|+|+|+||+|..++..|+..|+++|+|+|.+                    ..|++.+++.+...++.+.+....
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~--------------------~~ka~~la~~l~~~~~~~~~~~~~  184 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD--------------------PARAAALADELNARFPAARATAGS  184 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC--------------------HHHHHHHHHHHHhhCCCeEEEecc
Confidence            355789999999999999999999999999998743                    247788888887776654432221


Q ss_pred             cCCCcchhhhcCCCcEEEEcC
Q psy9587         194 TKVDEISEEFVHGFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~  214 (236)
                      .     ..+.+.++|+||.|+
T Consensus       185 ~-----~~~~~~~aDiVInaT  200 (284)
T PRK12549        185 D-----LAAALAAADGLVHAT  200 (284)
T ss_pred             c-----hHhhhCCCCEEEECC
Confidence            1     122346677777774

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.04  E-value=4.5e-05  Score=65.64  Aligned_cols=91  Identities=10%  Similarity=0.069  Sum_probs=64.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++.++|+|||.|.+|...++.|...| .++++++++      + ...                   +.++.+.-.+...
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~------~-~~~-------------------l~~l~~~~~i~~~   59 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPE------L-TEN-------------------LVKLVEEGKIRWK   59 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC------C-CHH-------------------HHHHHhCCCEEEE
Confidence            457789999999999999999999999 579998753      2 111                   1111111123333


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      ...+.   ...+.++|+||.|+++.+....|.+.|. .++++
T Consensus        60 ~~~~~---~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lv   97 (202)
T PRK06718         60 QKEFE---PSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALF   97 (202)
T ss_pred             ecCCC---hhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcE
Confidence            33332   3457889999999999999999999994 46654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.99  E-value=2e-05  Score=60.59  Aligned_cols=86  Identities=16%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++.++|+|||.|.+|..-++.|..+| .+++++.++. +  .. .                          ..++  ..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~--~~-~--------------------------~~i~--~~   50 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E--FS-E--------------------------GLIQ--LI   50 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H--HH-H--------------------------TSCE--EE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h--hh-h--------------------------hHHH--HH
Confidence            357789999999999999999999999 5799988775 1  11 0                          1112  22


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ...+   . +.+.++++||.|+++......|.+.|+++++|+-
T Consensus        51 ~~~~---~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn   89 (103)
T PF13241_consen   51 RREF---E-EDLDGADLVFAATDDPELNEAIYADARARGILVN   89 (103)
T ss_dssp             ESS----G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEE
T ss_pred             hhhH---H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEE
Confidence            3333   1 3478899999999999999999999999999873

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.93  E-value=4.8e-05  Score=61.14  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .++.++|+|+|+||.|..++..|...|+++|+++.           |.         ..|++.+++.+    +...+...
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n-----------Rt---------~~ra~~l~~~~----~~~~~~~~   64 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN-----------RT---------PERAEALAEEF----GGVNIEAI   64 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE-----------SS---------HHHHHHHHHHH----TGCSEEEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE-----------CC---------HHHHHHHHHHc----Ccccccee
Confidence            46778999999999999999999999999999976           43         13666666666    44444444


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCH
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNP  217 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~  217 (236)
                      .-.  + -.+.+.++|+||.|+...
T Consensus        65 ~~~--~-~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   65 PLE--D-LEEALQEADIVINATPSG   86 (135)
T ss_dssp             EGG--G-HCHHHHTESEEEE-SSTT
T ss_pred             eHH--H-HHHHHhhCCeEEEecCCC
Confidence            321  1 125678899999998643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.92  E-value=0.00011  Score=63.46  Aligned_cols=91  Identities=11%  Similarity=0.060  Sum_probs=69.0

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|||.|.+|..-++.|...|. ++++++++.-  ..+                    . .+.+.   -+++.+.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~--~~l--------------------~-~l~~~---~~i~~~~   59 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE--SEL--------------------T-LLAEQ---GGITWLA   59 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC--HHH--------------------H-HHHHc---CCEEEEe
Confidence            466789999999999999999999997 5999986431  011                    1 11111   1455555


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      ..+.   .+.+.++++||.|+++.+....+...|++.++++
T Consensus        60 ~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilv   97 (205)
T TIGR01470        60 RCFD---ADILEGAFLVIAATDDEELNRRVAHAARARGVPV   97 (205)
T ss_pred             CCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence            5554   3457899999999999999999999999999987

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.81  E-value=9.1e-05  Score=68.86  Aligned_cols=92  Identities=20%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      |+|+|+|.+|+.+++.|++.+-. ++++.|.+.-                    |++.+++.+    ...+++....++.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~--------------------~~~~~~~~~----~~~~~~~~~~d~~   56 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE--------------------KAERLAEKL----LGDRVEAVQVDVN   56 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH--------------------HHHHHHT------TTTTEEEEE--TT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH--------------------HHHHHHhhc----cccceeEEEEecC
Confidence            68999999999999999998865 8999884332                    233333332    2346666666655


Q ss_pred             cch--hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         198 EIS--EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~~~--~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +..  .++++++|+||.|..+. ....+-+.|.+.|+++|
T Consensus        57 ~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yv   95 (386)
T PF03435_consen   57 DPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYV   95 (386)
T ss_dssp             THHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEE
T ss_pred             CHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCee
Confidence            433  56789999999999887 77789999999999876

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.72  E-value=0.00037  Score=57.71  Aligned_cols=86  Identities=9%  Similarity=0.111  Sum_probs=62.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++..+|+|||.|.+|...++.|...|.. +++++++..+  .+                        .++ +  .++..
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIsp~~~~--~l------------------------~~l-~--~i~~~   59 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVSPEICK--EM------------------------KEL-P--YITWK   59 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCccCH--HH------------------------Hhc-c--CcEEE
Confidence            56778999999999999999999999975 8888755322  11                        011 1  12233


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      ...+.   .+.+.++|+||.|+++.+....+...|++++
T Consensus        60 ~~~~~---~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~   95 (157)
T PRK06719         60 QKTFS---NDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ   95 (157)
T ss_pred             ecccC---hhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence            33332   3456889999999999999999999998853

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.71  E-value=0.00032  Score=61.52  Aligned_cols=105  Identities=11%  Similarity=0.058  Sum_probs=75.4

Q ss_pred             chhhhhcccCccccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH
Q psy9587         101 LTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA  180 (236)
Q Consensus       101 ydrq~~l~g~~~~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L  180 (236)
                      |++....+...-+++..+|+|||.|.++..=++.|..+|.. |+++-++.-++  +                 ..    +
T Consensus        10 ~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~~e--l-----------------~~----l   65 (223)
T PRK05562         10 YNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFSKE--F-----------------LD----L   65 (223)
T ss_pred             hhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCCHH--H-----------------HH----H
Confidence            44444444554466778999999999999999999999955 99987664211  1                 00    1


Q ss_pred             HhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         181 QNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       181 ~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .. ++  .++.....+.   .+.+.++++||.|+++......|.+.|+..++++.
T Consensus        66 ~~-~~--~i~~~~r~~~---~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn  114 (223)
T PRK05562         66 KK-YG--NLKLIKGNYD---KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYI  114 (223)
T ss_pred             Hh-CC--CEEEEeCCCC---hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence            11 22  3555555553   34568999999999999999999999999998764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.40  E-value=0.0011  Score=59.93  Aligned_cols=36  Identities=14%  Similarity=0.088  Sum_probs=32.3

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+|+||+|..++..|+..|+.+|+|++.+
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            455789999999999999999999999999998864

>PRK04148 hypothetical protein; Provisional

Probab=97.34  E-value=0.0024  Score=51.89  Aligned_cols=92  Identities=11%  Similarity=0.033  Sum_probs=70.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +..+|++|||| .|..+|..|+..|. .++.+|-+.-                    .++.+    ++.    .+.+...
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~--------------------aV~~a----~~~----~~~~v~d   65 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK--------------------AVEKA----KKL----GLNAFVD   65 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH--------------------HHHHH----HHh----CCeEEEC
Confidence            44679999999 89999999999996 5777773321                    12222    222    2456667


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++.+.+.++.+++|+|-.+--+++...-|-++|++.+.++++
T Consensus        66 Dlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i  107 (134)
T PRK04148         66 DLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII  107 (134)
T ss_pred             cCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence            777767888999999999999999999999999999998874

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.28  E-value=0.0015  Score=56.79  Aligned_cols=93  Identities=12%  Similarity=0.048  Sum_probs=66.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++.++|+|||.|.+|..=++.|+.+|.. ++++-++.  ...+  .+               +.    ...   ++...
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~--~~el--~~---------------~~----~~~---~i~~~   61 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF--EPEL--KA---------------LI----EEG---KIKWI   61 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc--cHHH--HH---------------HH----Hhc---Ccchh
Confidence            45778999999999999999999999987 66665554  2222  11               11    111   13333


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ...+   ..+.+..+++||.|+++......|.+.|++++||+-
T Consensus        62 ~~~~---~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vN  101 (210)
T COG1648          62 EREF---DAEDLDDAFLVIAATDDEELNERIAKAARERRILVN  101 (210)
T ss_pred             hccc---ChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCcee
Confidence            3333   334556699999999999999999999999999873

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.24  E-value=0.0014  Score=53.10  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=53.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCce--EEEEe
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVE--VTSNE  193 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~--I~~~~  193 (236)
                      +|.|||+ |.+|+.+|..|+..|+. +|.|+|.+                    ..|++..+..|....+...  +....
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~--------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~   61 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN--------------------EDKAEGEALDLSHASAPLPSPVRITS   61 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS--------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC--------------------cccceeeehhhhhhhhhccccccccc
Confidence            5899999 99999999999999996 49999832                    1256667777776655443  33333


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .     ..+-++++|+||.+...
T Consensus        62 ~-----~~~~~~~aDivvitag~   79 (141)
T PF00056_consen   62 G-----DYEALKDADIVVITAGV   79 (141)
T ss_dssp             S-----SGGGGTTESEEEETTST
T ss_pred             c-----cccccccccEEEEeccc
Confidence            2     34567899999988753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.23  E-value=0.0014  Score=59.21  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+.++|+|+|+||.|..++..|+..|+.+|+|+|.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            3457899999999999999999999999999998553

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.0022  Score=56.07  Aligned_cols=91  Identities=15%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      .++|+|+|.+|..+|+.|+..|-. ++++|.|.-.                       +.+.+...   ....++...-+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~-----------------------~~~~~~~~---~~~~~v~gd~t   54 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEER-----------------------VEEFLADE---LDTHVVIGDAT   54 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHH-----------------------HHHHhhhh---cceEEEEecCC
Confidence            578999999999999999999988 5666644311                       11112211   12233333333


Q ss_pred             cch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHH-cCCcEE
Q psy9587         198 EIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRS-KSKISL  235 (236)
Q Consensus       198 ~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~-~~ip~I  235 (236)
                      +..   ..-+.++|++|.++++......+..++.+ +|+|-+
T Consensus        55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~v   96 (225)
T COG0569          55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRV   96 (225)
T ss_pred             CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcE
Confidence            222   33468899999999998888888888876 788865

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.14  E-value=0.0028  Score=58.12  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc-eEEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV-EVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v-~I~~~  192 (236)
                      +..+|.|||+|.+|+.+|..|+..|+. +|.|+|-+                    ..|++..+..|....|.. ++...
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~--------------------~~~~~g~~~Dl~~~~~~~~~~~i~   64 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN--------------------KEKAEGDAMDLSHAVPFTSPTKIY   64 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------CchhHHHHHHHHhhccccCCeEEE
Confidence            446899999999999999999999985 79998831                    224555666676665432 22222


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..     +.+-++++|+||.+..
T Consensus        65 ~~-----~~~~~~~adivIitag   82 (315)
T PRK00066         65 AG-----DYSDCKDADLVVITAG   82 (315)
T ss_pred             eC-----CHHHhCCCCEEEEecC
Confidence            22     2244799999998765

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.10  E-value=0.0034  Score=56.94  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=32.3

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+.++|+|+|+||.+..++-.|+..|+.+|+|++.+
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt  157 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR  157 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            455789999999999999999999999999998854

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.08  E-value=0.0022  Score=57.83  Aligned_cols=35  Identities=6%  Similarity=-0.026  Sum_probs=31.6

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|+|+||.|..++..|+..|+.+|+|++.
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR  157 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR  157 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence            35678999999999999999999999999999863

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.07  E-value=0.0032  Score=57.15  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=50.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC--ceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN--VEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~--v~I~~~~~  194 (236)
                      +|.|+|+|++|+.++..|+..|+. +|.|+|.+.                    .|++..+..|....+.  ..+.....
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~--------------------~~~~~~a~dL~~~~~~~~~~~~i~~~   61 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE--------------------EKAEGEALDLEDALAFLPSPVKIKAG   61 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc--------------------chhhHhHhhHHHHhhccCCCeEEEcC
Confidence            589999999999999999999985 899998532                    2344556656554321  11222211


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           +.+.++++|+||.|+..
T Consensus        62 -----~~~~l~~aDIVIitag~   78 (306)
T cd05291          62 -----DYSDCKDADIVVITAGA   78 (306)
T ss_pred             -----CHHHhCCCCEEEEccCC
Confidence                 22346899999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK10637 cysG siroheme synthase; Provisional

Probab=97.05  E-value=0.0048  Score=59.25  Aligned_cols=93  Identities=10%  Similarity=0.001  Sum_probs=69.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++.++|+|||.|.++..=++.|..+|. +++++-++.       +                   +.+.++...-+++..
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~-------~-------------------~~~~~l~~~~~i~~~   61 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF-------I-------------------PQFTAWADAGMLTLV   61 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC-------C-------------------HHHHHHHhCCCEEEE
Confidence            4677899999999999999999999997 488875432       1                   011112112245555


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ...+.   .+.+.++++||.|+|+......|.+.|+..++++-
T Consensus        62 ~~~~~---~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN  101 (457)
T PRK10637         62 EGPFD---ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN  101 (457)
T ss_pred             eCCCC---hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence            55553   35578999999999999999999999999998763

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.05  E-value=0.0014  Score=62.36  Aligned_cols=75  Identities=23%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|||+|-.|.-+|++|...|+.+|+++           ||++         -||+.+++++.     .++....
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia-----------NRT~---------erA~~La~~~~-----~~~~~l~  230 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA-----------NRTL---------ERAEELAKKLG-----AEAVALE  230 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE-----------cCCH---------HHHHHHHHHhC-----CeeecHH
Confidence            577899999999999999999999999999994           6662         36777777766     1222111


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPN  218 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~  218 (236)
                           .-.+.+..+|+||.|+..+.
T Consensus       231 -----el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         231 -----ELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             -----HHHHhhhhCCEEEEecCCCc
Confidence                 12467889999999987543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.00  E-value=0.0038  Score=57.16  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc---eEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV---EVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v---~I~~~~  193 (236)
                      +|.|||+|.||+.+|..|+..|+ ++|.|+|-                    .+.|++..+.-|....+..   .++.+.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di--------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~   60 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV--------------------NEGVAEGEALDFHHATALTYSTNTKIRA   60 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC--------------------CcchhhHHHHHHHhhhccCCCCCEEEEE
Confidence            47899999999999999999998 57999982                    1234555666676654421   233333


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .     +.+-++++|+||.+...
T Consensus        61 ~-----~y~~~~~aDivvitaG~   78 (307)
T cd05290          61 G-----DYDDCADADIIVITAGP   78 (307)
T ss_pred             C-----CHHHhCCCCEEEECCCC
Confidence            2     23567999999988753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.0049  Score=58.26  Aligned_cols=94  Identities=20%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|+|+|++|..+|+.|+..|.. ++++|.+.-+                   ..+...++|.+..    ++...
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~-V~~~d~~~~~-------------------~~~~~~~~l~~~~----~~~~~   58 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAK-VILTDEKEED-------------------QLKEALEELGELG----IELVL   58 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchH-------------------HHHHHHHHHHhcC----CEEEe
Confidence            3567899999999999999999999974 8898754310                   1111223343332    22333


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ....+   +...++|+||.+++..... .+-..|+++|||++
T Consensus        59 ~~~~~---~~~~~~d~vv~~~g~~~~~-~~~~~a~~~~i~~~   96 (450)
T PRK14106         59 GEYPE---EFLEGVDLVVVSPGVPLDS-PPVVQAHKKGIEVI   96 (450)
T ss_pred             CCcch---hHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEE
Confidence            32222   3457899999988653332 36677788899875

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.89  E-value=0.0046  Score=55.40  Aligned_cols=36  Identities=8%  Similarity=-0.010  Sum_probs=32.5

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+|+||+|..++..|...|+.++++++.+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            456789999999999999999999999999998754

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.81  E-value=0.0061  Score=55.35  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             EEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC---ceEEEEec
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN---VEVTSNET  194 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~---v~I~~~~~  194 (236)
                      |.|||+|.+|+.+|..|+..|+ .+|+|+|.+                    +.|++..+..|....+.   +++.. ..
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~--------------------~~~~~g~~~DL~~~~~~~~~~~i~~-~~   59 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN--------------------EEKAKGDALDLSHASAFLATGTIVR-GG   59 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------ccHHHHHHHhHHHhccccCCCeEEE-CC
Confidence            4789999999999999999998 569999942                    12455666677766654   22221 11


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           +.+-++++|+||.|...
T Consensus        60 -----~~~~l~~aDiVIitag~   76 (300)
T cd00300          60 -----DYADAADADIVVITAGA   76 (300)
T ss_pred             -----CHHHhCCCCEEEEcCCC
Confidence                 13467899999998763

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.79  E-value=0.0083  Score=47.48  Aligned_cols=92  Identities=23%  Similarity=0.281  Sum_probs=56.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCceEEEEec
Q psy9587         118 VYSTGPL-TRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v~I~~~~~  194 (236)
                      +|+|+|+ |-.|..+++.+.. .|+.=...+|...   ++.      . ..|+|.         +..+. ..+.+.    
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~-g~d~g~---------~~~~~~~~~~v~----   58 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------V-GKDVGE---------LAGIGPLGVPVT----   58 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------T-TSBCHH---------HCTSST-SSBEB----
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------c-cchhhh---------hhCcCCcccccc----
Confidence            5899999 9999999999998 7776666667543   111      0 122321         11111 111111    


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                         ..-.+.+..+|+|||++ +++.-...-++|.++++|+|.
T Consensus        59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~Vi   96 (124)
T PF01113_consen   59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVI   96 (124)
T ss_dssp             ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEE
T ss_pred             ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEE
Confidence               22245666699999999 777777888888888999873

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.77  E-value=0.0039  Score=59.39  Aligned_cols=76  Identities=11%  Similarity=0.073  Sum_probs=53.4

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..++|+|+|+|+.|..++++|+..|+.+|+++.           |.         ..|++.+++.+.    ...+..  
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n-----------Rt---------~~ra~~La~~~~----~~~~~~--  232 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN-----------RT---------IEKAQKITSAFR----NASAHY--  232 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC-----------CC---------HHHHHHHHHHhc----CCeEec--
Confidence            4567899999999999999999999999999954           53         125555555432    112111  


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPN  218 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~  218 (236)
                        + +...+.+.++|+||.|+..+.
T Consensus       233 --~-~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        233 --L-SELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             --H-HHHHHHhccCCEEEECcCCCC
Confidence              1 112467889999999997654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0072  Score=54.88  Aligned_cols=34  Identities=9%  Similarity=-0.012  Sum_probs=31.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|+|+||.+-.++..|+..|+.+|+|++.
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR  158 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR  158 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence            4578999999999999999999999999999763

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.66  E-value=0.0084  Score=55.00  Aligned_cols=35  Identities=23%  Similarity=0.151  Sum_probs=31.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            44689999999999999999999998889999954

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.63  E-value=0.01  Score=54.12  Aligned_cols=84  Identities=17%  Similarity=0.159  Sum_probs=55.6

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +...+|+|+|+|.+|..+++.|...|+.+++++|.+.                    .|+..+++.+.    . .+..  
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~--------------------~ra~~la~~~g----~-~~~~--  228 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY--------------------ERAEELAKELG----G-NAVP--  228 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH--------------------HHHHHHHHHcC----C-eEEe--
Confidence            4567899999999999999999999999999987432                    23444444432    1 1111  


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                        + +...+.+.++|+||.|+.+......+.+..
T Consensus       229 --~-~~~~~~l~~aDvVi~at~~~~~~~~~~~~~  259 (311)
T cd05213         229 --L-DELLELLNEADVVISATGAPHYAKIVERAM  259 (311)
T ss_pred             --H-HHHHHHHhcCCEEEECCCCCchHHHHHHHH
Confidence              1 112345678999999998766633344443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.62  E-value=0.011  Score=54.29  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc---eEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV---EVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v---~I~~~  192 (236)
                      .+|.|||+|.||+.+|..|+..|.. +|.|+|-+                    ..|++..+..|....|..   +|...
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~--------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~   63 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVV--------------------EDKLKGEAMDLQHGSAFLKNPKIEAD   63 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence            4789999999999999999999985 69999832                    124556666677665432   22211


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                       .     +.+.++++|+||.+..
T Consensus        64 -~-----dy~~~~~adivvitaG   80 (312)
T cd05293          64 -K-----DYSVTANSKVVIVTAG   80 (312)
T ss_pred             -C-----CHHHhCCCCEEEECCC
Confidence             1     2234799999998765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=96.56  E-value=0.011  Score=55.11  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=51.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC---ceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN---VEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~---v~I~~~  192 (236)
                      .+|.|||+|.||+.+|..|+..|+ .+|.|+|-+                    +.|++..+..|....+.   ++|...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~--------------------~~~~~g~a~DL~~~~~~~~~~~i~~~   97 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN--------------------PDKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC--------------------CchhhHHHHHHHhhhhcCCCCEEEeC
Confidence            588999999999999999999998 479999841                    12345555556655432   333221


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                       .     +.+.++++|+||.+...
T Consensus        98 -~-----dy~~~~daDiVVitAG~  115 (350)
T PLN02602         98 -T-----DYAVTAGSDLCIVTAGA  115 (350)
T ss_pred             -C-----CHHHhCCCCEEEECCCC
Confidence             1     23458999999988653

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.56  E-value=0.011  Score=62.12  Aligned_cols=107  Identities=18%  Similarity=0.050  Sum_probs=60.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +.++|+|+|+|.+|..++++|+..+--.  .+..+.-+..++     +..-.|....+++.+++.    .|.++  +..-
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~--~~~~~~~~~~~~-----lV~VaD~~~~~a~~la~~----~~~~~--~v~l  634 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTIS--YYGDDSEEPTDV-----HVIVASLYLKDAKETVEG----IENAE--AVQL  634 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCcc--cccccccccccc-----EEEEECCCHHHHHHHHHh----cCCCc--eEEe
Confidence            4568999999999999999998753211  111111111111     122233333344444433    34433  2222


Q ss_pred             CCCcc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ++.+.  -.++++++|+||.|+... .-..+.+.|.+.|+.++
T Consensus       635 Dv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv  676 (1042)
T PLN02819        635 DVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLV  676 (1042)
T ss_pred             ecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEE
Confidence            22221  134557899999998763 34677888888888876

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.0085  Score=58.93  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             cccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+| ++|+++++.++..+.++|.++|.|...                    -..+...|++..|..++..+
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~--------------------~~~i~~el~~~~~~~~~~~~  307 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYK--------------------LYLIDMELREKFPELKLRFY  307 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHH--------------------HHHHHHHHHhhCCCcceEEE
Confidence            577899999965 799999999999999999999977643                    23467788999998899988


Q ss_pred             ecCCCcch--hhhcCC--CcEEEEcC
Q psy9587         193 ETKVDEIS--EEFVHG--FDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~~l~~--~DlVI~~~  214 (236)
                      -.++.+..  ...+.+  .|+|+-|.
T Consensus       308 igdVrD~~~~~~~~~~~kvd~VfHAA  333 (588)
T COG1086         308 IGDVRDRDRVERAMEGHKVDIVFHAA  333 (588)
T ss_pred             ecccccHHHHHHHHhcCCCceEEEhh
Confidence            88887654  445666  89988654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.42  E-value=0.027  Score=48.31  Aligned_cols=109  Identities=9%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .++.++|+|+|+|.+|..+++.|...|. +++++|.+.-....+ ..       ..|...++.  +.+...  .+.|-..
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~-~~-------~~g~~~v~~--~~l~~~--~~Dv~vp   91 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARA-AE-------LFGATVVAP--EEIYSV--DADVFAP   91 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH-HH-------HcCCEEEcc--hhhccc--cCCEEEe
Confidence            4677889999999999999999999998 577888553111111 00       001000000  111111  1222221


Q ss_pred             ---ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ---ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ---~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                         ...+++.+...+ ++++|+....++-+...-.++.+++||.|+
T Consensus        92 ~A~~~~I~~~~~~~l-~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~  136 (200)
T cd01075          92 CALGGVINDDTIPQL-KAKAIAGAANNQLADPRHGQMLHERGILYA  136 (200)
T ss_pred             cccccccCHHHHHHc-CCCEEEECCcCccCCHhHHHHHHHCCCEEe
Confidence               122333333333 478888777664443455667778887664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.41  E-value=0.015  Score=53.44  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=30.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|.|||+|.+|+.+|..|+..|+..+.|+|-+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~   39 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV   39 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            44689999999999999999999998669999853

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.40  E-value=0.0038  Score=56.91  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             EEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC--ce--EEEEe
Q psy9587         119 YSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN--VE--VTSNE  193 (236)
Q Consensus       119 VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~--v~--I~~~~  193 (236)
                      |+|.| +|++|+++++.|+..|+.+|.++|.|.-...++                    ...+++..+.  ++  +....
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l--------------------~~~l~~~~~~~~v~~~~~~vi   60 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL--------------------ERELRSRFPDPKVRFEIVPVI   60 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH--------------------HHHCHHHC--TTCEEEEE--C
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH--------------------HHHHhhcccccCcccccCcee
Confidence            57777 678999999999999999999999776544444                    4455555443  32  23445


Q ss_pred             cCCCcch--hhhcC--CCcEEEEcC
Q psy9587         194 TKVDEIS--EEFVH--GFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~--~~~l~--~~DlVI~~~  214 (236)
                      .++.+..  ...++  +.|+|+-+.
T Consensus        61 gDvrd~~~l~~~~~~~~pdiVfHaA   85 (293)
T PF02719_consen   61 GDVRDKERLNRIFEEYKPDIVFHAA   85 (293)
T ss_dssp             TSCCHHHHHHHHTT--T-SEEEE--
T ss_pred             ecccCHHHHHHHHhhcCCCEEEECh
Confidence            5555432  34556  788988664

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>KOG4169|consensus

Probab=96.40  E-value=0.012  Score=52.25  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=58.4

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++++++| |||+|-++++.|+.-|+..+.+.|    +.+|+                  .+..+|+++||.+++..+.
T Consensus         4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~----~~En~------------------~a~akL~ai~p~~~v~F~~   61 (261)
T KOG4169|consen    4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD----SEENP------------------EAIAKLQAINPSVSVIFIK   61 (261)
T ss_pred             cCceEEEecCCchhhHHHHHHHHHcCchheeehh----hhhCH------------------HHHHHHhccCCCceEEEEE
Confidence            455666555 999999999999999999888866    22333                  3677899999999999998


Q ss_pred             cCCCcch---------hhhcCCCcEEEEcC
Q psy9587         194 TKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      .++....         ...+...|++|...
T Consensus        62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgA   91 (261)
T KOG4169|consen   62 CDVTNRGDLEAAFDKILATFGTIDILINGA   91 (261)
T ss_pred             eccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence            8887521         12345678888654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.39  E-value=0.0051  Score=45.63  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC--ceEEEe-eCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV--KSVCLL-DSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV--g~I~Lv-D~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|+|||+|.+|+.++..|+..|.  .++.++ +.+.                    .|    .+++.+..+ +.  ... 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~--------------------~~----~~~~~~~~~-~~--~~~-   52 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP--------------------EK----AAELAKEYG-VQ--ATA-   52 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH--------------------HH----HHHHHHHCT-TE--EES-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH--------------------HH----HHHHHHhhc-cc--ccc-
Confidence            47899999999999999999995  344433 3111                    12    233334443 11  111 


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDF  226 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~  226 (236)
                         ..+.+.++.+|+||.|+.+......+.++
T Consensus        53 ---~~~~~~~~~advvilav~p~~~~~v~~~i   81 (96)
T PF03807_consen   53 ---DDNEEAAQEADVVILAVKPQQLPEVLSEI   81 (96)
T ss_dssp             ---EEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred             ---CChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence               12456677899999999988877777777

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.37  E-value=0.025  Score=47.59  Aligned_cols=80  Identities=23%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++..+|+|+|+ |++|..+++.|+..|. ++++++.+                    ..|++.+++.+.+.. ...+...
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~--------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD--------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC--------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            46678999996 9999999999999884 78887632                    124555566554332 2333332


Q ss_pred             ecCCCcc-hhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEI-SEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~-~~~~l~~~DlVI~~~d~  216 (236)
                      ... +.. ..+.+.++|+||.|+..
T Consensus        84 ~~~-~~~~~~~~~~~~diVi~at~~  107 (194)
T cd01078          84 ETS-DDAARAAAIKGADVVFAAGAA  107 (194)
T ss_pred             eCC-CHHHHHHHHhcCCEEEECCCC
Confidence            111 111 14567889999988754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.35  E-value=0.052  Score=41.41  Aligned_cols=83  Identities=16%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCCc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDE  198 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~~  198 (236)
                      |+|+|+|.+|-++++.|...| -.++++|.|.-.                        .+.+.+..    +..+.++..+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~------------------------~~~~~~~~----~~~i~gd~~~   51 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER------------------------VEELREEG----VEVIYGDATD   51 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH------------------------HHHHHHTT----SEEEES-TTS
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH------------------------HHHHHhcc----cccccccchh
Confidence            689999999999999999944 569999966422                        22223222    2344455444


Q ss_pred             ch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc
Q psy9587         199 IS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSK  230 (236)
Q Consensus       199 ~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~  230 (236)
                      ..   ..-+++++.||.++++......+...+++.
T Consensus        52 ~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~   86 (116)
T PF02254_consen   52 PEVLERAGIEKADAVVILTDDDEENLLIALLAREL   86 (116)
T ss_dssp             HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred             hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence            22   335678999999999999888888888873

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.18  E-value=0.02  Score=50.86  Aligned_cols=31  Identities=13%  Similarity=0.123  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|+|+|.+|+.++..|+..|. +++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            48999999999999999999985 68998864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.18  E-value=0.0047  Score=50.69  Aligned_cols=98  Identities=14%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|.|+|+|..|+.+|..|+..| .+++|+..+.=....+ +.+..                 -....|.+++.. .-..+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i-~~~~~-----------------n~~~~~~~~l~~-~i~~t   60 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEI-NETRQ-----------------NPKYLPGIKLPE-NIKAT   60 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHH-HHHTS-----------------ETTTSTTSBEET-TEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHH-HHhCC-----------------CCCCCCCcccCc-ccccc
Confidence            4789999999999999999999 6688887664222222 11000                 000112222111 00112


Q ss_pred             cchhhhcCCCcEEEEcCCCHHHHHHHHHHHH--HcCCcEE
Q psy9587         198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCR--SKSKISL  235 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~--~~~ip~I  235 (236)
                      ..-.+.++++|+||.++.+...+..+.++..  +.+.++|
T Consensus        61 ~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii  100 (157)
T PF01210_consen   61 TDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII  100 (157)
T ss_dssp             SSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred             cCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE
Confidence            2224577899999999998888877777665  3344443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.15  E-value=0.023  Score=52.40  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..+|.|||+|.+|+.+|..++.+|.. ++++|.+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            35799999999999999999999987 88888654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.13  E-value=0.037  Score=50.22  Aligned_cols=102  Identities=18%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHh----CC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILS----GV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN  182 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~----GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~  182 (236)
                      +++..+|+++|+|+.|.-+++.|..+    |+      ++|.++|.+-+=..+-         .|+...|...+.    .
T Consensus        22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r---------~~l~~~~~~~a~----~   88 (279)
T cd05312          22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR---------KDLTPFKKPFAR----K   88 (279)
T ss_pred             ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC---------CcchHHHHHHHh----h
Confidence            45678899999999999999999988    99      6999999765422211         122233333222    2


Q ss_pred             hCCCceEEEEecCCCcchhhhcC--CCcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587         183 LNPNVEVTSNETKVDEISEEFVH--GFDVVIATSC--NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       183 inp~v~I~~~~~~l~~~~~~~l~--~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++        ... ..-.+.++  +.|++|.+..  ..=+...|..++....-|+||
T Consensus        89 ~~~--------~~~-~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF  137 (279)
T cd05312          89 DEE--------KEG-KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF  137 (279)
T ss_pred             cCc--------ccC-CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence            222        000 11245566  7799988763  456777888888888888886

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.024  Score=54.17  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +..+|+|+|+|++|.++|..|...|.. ++++|....                   .....+.+.|++.  .+++  +..
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~~~-------------------~~~~~~~~~l~~~--gv~~--~~~   70 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDGDD-------------------ERHRALAAILEAL--GATV--RLG   70 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCch-------------------hhhHHHHHHHHHc--CCEE--EEC
Confidence            446899999999999999999999985 888884321                   0122334445544  3333  222


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .-..    ...++|+||.+..-.... .+-..|++.|+|++
T Consensus        71 ~~~~----~~~~~D~Vv~s~Gi~~~~-~~~~~a~~~gi~v~  106 (480)
T PRK01438         71 PGPT----LPEDTDLVVTSPGWRPDA-PLLAAAADAGIPVW  106 (480)
T ss_pred             CCcc----ccCCCCEEEECCCcCCCC-HHHHHHHHCCCeec
Confidence            1111    335689999887533222 23344567777764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.10  E-value=0.013  Score=47.02  Aligned_cols=37  Identities=8%  Similarity=-0.008  Sum_probs=31.7

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..+|+|+|+|++|..+++.|...|...++++|.+.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            3457899999999999999999999877899988653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.09  E-value=0.016  Score=48.61  Aligned_cols=35  Identities=11%  Similarity=0.052  Sum_probs=30.0

Q ss_pred             ccccceEEEEcCChh-HHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRV-GAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~Ggv-Gsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            467789999999985 8889999999999 5888773

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.08  E-value=0.0092  Score=52.19  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=33.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~  150 (236)
                      ++..+|+|+|+|+.|..+++.|+..|+.  +|+++|.+-
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            5667899999999999999999999999  999999773

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.05  E-value=0.023  Score=52.39  Aligned_cols=79  Identities=14%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGV-K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PN  186 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GV-g-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~  186 (236)
                      +-.+|.|||+ |.||+.+|..|+..|+ +     +|.|+|-..                  .+.|++..+..|.... |.
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~------------------~~~~a~g~a~Dl~~~~~~~   63 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP------------------AMKALEGVAMELEDCAFPL   63 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC------------------cccccchHHHHHhhccccc
Confidence            3468999998 9999999999999887 4     588877321                  1123444555566555 32


Q ss_pred             ce-EEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         187 VE-VTSNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       187 v~-I~~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .. ++     +...+.+-++++|+||.+.+.
T Consensus        64 ~~~~~-----i~~~~~~~~~daDvVVitAG~   89 (323)
T TIGR01759        64 LAGVV-----ATTDPEEAFKDVDAALLVGAF   89 (323)
T ss_pred             cCCcE-----EecChHHHhCCCCEEEEeCCC
Confidence            21 11     112245678999999988753

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.02  E-value=0.037  Score=49.91  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            578999999999999999999997 588888543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.00  E-value=0.05  Score=47.69  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=32.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++..+|+|.|.|.||..+++.|...|..-+.+.|.
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            457789999999999999999999999987778885

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.97  E-value=0.06  Score=46.92  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=33.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++.++|+|.|+|.+|..+|+.|...|...+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            35778999999999999999999999999999999543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.96  E-value=0.016  Score=42.73  Aligned_cols=37  Identities=30%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..++++|+|+|.+|..++..|...|..++.++|.|.
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi   57 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI   57 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4567899999999999999999999888999999844

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.94  E-value=0.049  Score=50.00  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=53.6

Q ss_pred             cceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .++|+|+|+|+.|...++.|. ..|+.++++++.+                    ..|++.+++++.+..+ +++...  
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~--------------------~~~a~~~a~~~~~~~g-~~v~~~--  185 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD--------------------SAKAEALALQLSSLLG-IDVTAA--  185 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC--------------------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence            358999999999999999997 5788889997522                    2367777887765432 333322  


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                         +...+.+.++|+||.|+..
T Consensus       186 ---~~~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       186 ---TDPRAAMSGADIIVTTTPS  204 (326)
T ss_pred             ---CCHHHHhccCCEEEEecCC
Confidence               1124567889999999865

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.94  E-value=0.026  Score=50.58  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=65.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHh----CC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILS----GV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN  182 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~----GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~  182 (236)
                      .++..+|+++|+|+.|.-+++.|+.+    |+      ++|.++|.+-+=..+-         .|+-    +.-+...+.
T Consensus        22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l~----~~~~~~a~~   88 (255)
T PF03949_consen   22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDLN----PHKKPFARK   88 (255)
T ss_dssp             -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSHS----HHHHHHHBS
T ss_pred             CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccCC----hhhhhhhcc
Confidence            46778999999999999999999999    99      8999999774322111         1221    112223333


Q ss_pred             hCCCceEEEEecCCCcchhhhcCCC--cEEEEcC--CCHHHHHHHHHHHHHcCCcEEC
Q psy9587         183 LNPNVEVTSNETKVDEISEEFVHGF--DVVIATS--CNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       183 inp~v~I~~~~~~l~~~~~~~l~~~--DlVI~~~--d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++....        ..-.+.++.+  |++|.+.  .+.=+...+..++.....|+||
T Consensus        89 ~~~~~~~--------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF  138 (255)
T PF03949_consen   89 TNPEKDW--------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF  138 (255)
T ss_dssp             SSTTT----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred             Ccccccc--------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence            4433211        1124556666  8988876  3455777888888888888886

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.92  E-value=0.093  Score=48.57  Aligned_cols=21  Identities=19%  Similarity=0.085  Sum_probs=19.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHH
Q psy9587         117 YVYSTGPLTRVGAEIAKNIIL  137 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~  137 (236)
                      .+|.|+|+|.||+.+++.|..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            468999999999999999886

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.90  E-value=0.054  Score=42.35  Aligned_cols=88  Identities=15%  Similarity=0.085  Sum_probs=51.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEEE
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVTS  191 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~~  191 (236)
                      +|+||| .|-+|.++++.|...=- .-+.++....                ..|+.        +...+|    ...+..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----------------~~g~~--------~~~~~~~~~~~~~~~~   56 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----------------SAGKP--------LSEVFPHPKGFEDLSV   56 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----------------TTTSB--------HHHTTGGGTTTEEEBE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----------------ccCCe--------eehhccccccccceeE
Confidence            589999 88999999999997222 2233333222                13332        222222    222222


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..     ...+.++++|+||.|+++........++ .+.|+++|
T Consensus        57 ~~-----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~Vi   94 (121)
T PF01118_consen   57 ED-----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVI   94 (121)
T ss_dssp             EE-----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEE
T ss_pred             ee-----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEE
Confidence            22     2334568999999999887776665555 67777664

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN00203 glutamyl-tRNA reductase

Probab=95.89  E-value=0.023  Score=55.76  Aligned_cols=76  Identities=13%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +...+|+|||+|.+|..++++|...|+.+|++++.+.                    .|++.+++.+    +.+.+....
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~--------------------era~~La~~~----~g~~i~~~~  319 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE--------------------ERVAALREEF----PDVEIIYKP  319 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH--------------------HHHHHHHHHh----CCCceEeec
Confidence            4567899999999999999999999999999976321                    2344444333    233332211


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .   +...+.+.++|+||.|+..
T Consensus       320 ~---~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        320 L---DEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             H---hhHHHHHhcCCEEEEccCC
Confidence            1   1124567899999999754

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.88  E-value=0.071  Score=43.51  Aligned_cols=86  Identities=17%  Similarity=0.184  Sum_probs=57.9

Q ss_pred             EEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         119 YSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       119 VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      |+|+|+ |.+|..+++.|...| .+++.+           .|.         ..|.+.        .+  .++....++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~-----------~R~---------~~~~~~--------~~--~~~~~~~d~~   49 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTAL-----------VRS---------PSKAED--------SP--GVEIIQGDLF   49 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEE-----------ESS---------GGGHHH--------CT--TEEEEESCTT
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEE-----------ecC---------chhccc--------cc--ccccceeeeh
Confidence            689996 999999999999999 445553           232         012222        33  5556666665


Q ss_pred             cch--hhhcCCCcEEEEcCCC----HHHHHHHHHHHHHcCCcEE
Q psy9587         198 EIS--EEFVHGFDVVIATSCN----PNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~~~--~~~l~~~DlVI~~~d~----~~~r~~In~~c~~~~ip~I  235 (236)
                      +..  .+.++++|.||++..+    ...-..+-+.|.+.+++-+
T Consensus        50 d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~   93 (183)
T PF13460_consen   50 DPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV   93 (183)
T ss_dssp             CHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred             hhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccc
Confidence            432  5567899999999753    4455677778888887543

...

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.87  E-value=0.023  Score=52.62  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+|.+|--.+..+...|..+|.++|.+.-.                    .+.++    +... ..+......-.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R--------------------l~~A~----~~~g-~~~~~~~~~~~  225 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER--------------------LELAK----EAGG-ADVVVNPSEDD  225 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH--------------------HHHHH----HhCC-CeEeecCcccc
Confidence            79999999999999999999999999999854321                    11111    1111 11111111100


Q ss_pred             --cchhhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         198 --EISEEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       198 --~~~~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                        ....+.-  .++|++|+|+.+..+.....++++..|.-+
T Consensus       226 ~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~  266 (350)
T COG1063         226 AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVV  266 (350)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence              0011222  359999999998888888888888776543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.86  E-value=0.057  Score=38.92  Aligned_cols=53  Identities=19%  Similarity=0.106  Sum_probs=37.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL  183 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i  183 (236)
                      +|+|||.|.+|+++|..|+..|. +++|++...-          +.  ......=.+.+.+.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~----------~~--~~~~~~~~~~~~~~l~~~   53 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR----------LL--PGFDPDAAKILEEYLRKR   53 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS----------SS--TTSSHHHHHHHHHHHHHT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch----------hh--hhcCHHHHHHHHHHHHHC
Confidence            47899999999999999999996 5888874321          11  223333455666677766

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.85  E-value=0.071  Score=49.36  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=19.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS  138 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~  138 (236)
                      .+|+|+|+|.+|..+++.|...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4689999999999999999765

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.84  E-value=0.034  Score=49.91  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=28.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|+|+|++|..++..+...|+..+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            3457899999999999999888999998877764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.84  E-value=0.023  Score=50.05  Aligned_cols=31  Identities=19%  Similarity=0.188  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC--ceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV--KSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV--g~I~LvD~  148 (236)
                      +|.|||+|.+|+.++..|...|.  ..+.++|.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r   36 (267)
T PRK11880          4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP   36 (267)
T ss_pred             EEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence            58999999999999999999884  34566553

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.80  E-value=0.055  Score=49.44  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=50.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ..++|+|+|+|+.|...++.+.. .|+.+|++++.+                    ..|++.+++.+.+..  ..+... 
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs--------------------~~~a~~~a~~~~~~g--~~~~~~-  180 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD--------------------PAKAEALAAELRAQG--FDAEVV-  180 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC--------------------HHHHHHHHHHHHhcC--CceEEe-
Confidence            44689999999999999987775 678889987632                    235666777766532  122221 


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNP  217 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~  217 (236)
                          ....+.+.++|+||+|+.+.
T Consensus       181 ----~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        181 ----TDLEAAVRQADIISCATLST  200 (314)
T ss_pred             ----CCHHHHHhcCCEEEEeeCCC
Confidence                11234567888888887653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.76  E-value=0.032  Score=49.96  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            578999999999999999999997 59999854

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.73  E-value=0.042  Score=50.10  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      +|.|||+|.+|+.+|..|+..|+ .++.|+|.+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            48899999999999999999996 679999953

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.72  E-value=0.011  Score=47.29  Aligned_cols=89  Identities=15%  Similarity=0.090  Sum_probs=49.9

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCcc-ccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF-LAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~-l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      |+|+|+|++|+.+|-.|...|.. +++++... ..+.+ ..+- -+...+ |.                ..+... ....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~-~~~g~~~~~~~-~~----------------~~~~~~-~~~~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAI-KEQGLTITGPD-GD----------------ETVQPP-IVIS   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHH-HHHCEEEEETT-EE----------------EEEEEE-EEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhh-hheeEEEEecc-cc----------------eecccc-cccC
Confidence            68999999999999999997776 77777444 21112 1110 000000 00                000000 0000


Q ss_pred             cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      . .......+|+||.|+-.......+..+...
T Consensus        60 ~-~~~~~~~~D~viv~vKa~~~~~~l~~l~~~   90 (151)
T PF02558_consen   60 A-PSADAGPYDLVIVAVKAYQLEQALQSLKPY   90 (151)
T ss_dssp             S-HGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred             c-chhccCCCcEEEEEecccchHHHHHHHhhc
Confidence            0 023457899999999887777777765443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.71  E-value=0.03  Score=51.64  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=29.5

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~  148 (236)
                      +-.+|+|+|+ |.||+.++..|+..|.. +|.|+|-
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            4458999998 99999999999987775 7999996

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.70  E-value=0.097  Score=47.98  Aligned_cols=35  Identities=9%  Similarity=0.078  Sum_probs=30.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|||+|.+|..+|+.|...|+. +..+|.
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~  167 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSR  167 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            46778999999999999999999999985 666664

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.69  E-value=0.081  Score=46.97  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=24.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      +|+|+|| |.+|..+++.+... ++.-..++|.+
T Consensus         3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~   36 (257)
T PRK00048          3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP   36 (257)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            6899999 99999999988764 55555566654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.65  E-value=0.073  Score=48.83  Aligned_cols=78  Identities=8%  Similarity=0.069  Sum_probs=54.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+|+|+|+|+.|...+..++ ..|+.++.++|.+                    ..|++.+++++....+ +++....
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~--------------------~~~a~~~~~~~~~~~~-~~~~~~~  184 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT--------------------FEKAYAFAQEIQSKFN-TEIYVVN  184 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC--------------------HHHHHHHHHHHHHhcC-CcEEEeC
Confidence            3467999999999998888875 5688999998632                    2356677777765432 3333321


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPN  218 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~  218 (236)
                      .     -.+.+.++|+||.|+.+.+
T Consensus       185 ~-----~~~~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        185 S-----ADEAIEEADIIVTVTNAKT  204 (325)
T ss_pred             C-----HHHHHhcCCEEEEccCCCC
Confidence            1     2456688999999997654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.64  E-value=0.043  Score=49.61  Aligned_cols=31  Identities=32%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      |.|||+|.+|+.+|..|+..|.++++|+|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5789999999999999999887699999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.64  E-value=0.029  Score=56.02  Aligned_cols=86  Identities=13%  Similarity=0.180  Sum_probs=62.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|+. ++++|.|.-.                    ++    .+++.  +  ..++.++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~--------------------v~----~~~~~--g--~~v~~GDa  451 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDH--------------------IE----TLRKF--G--MKVFYGDA  451 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHH--------------------HH----HHHhc--C--CeEEEEeC
Confidence            5789999999999999999999986 8888976532                    12    22221  2  23444444


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      ++.+   ..-++++|++|.|+++.+....+-..++++.
T Consensus       452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~  489 (621)
T PRK03562        452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF  489 (621)
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            4322   2346789999999999999999988888764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.64  E-value=0.044  Score=49.44  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|.|||+|..|+.+|.+|+.+|.. ++++|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCH
Confidence            4799999999999999999999985 99998654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.63  E-value=0.075  Score=47.39  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=25.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhC--CceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSG--VKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~G--Vg~I~LvD~D  149 (236)
                      +|.|||||.+|..+++.|...+  +.-+.++|.+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            5899999999999999998764  4445566654

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=95.63  E-value=0.0043  Score=53.09  Aligned_cols=48  Identities=10%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             ccccceEEEEcCChhHHH-HHHHHHHhCCceE------EEe---eCCcccccCCCCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAE-IAKNIILSGVKSV------CLL---DSGVVTKEDVNTAQF  161 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGse-vak~La~~GVg~I------~Lv---D~D~Ve~sNL~~rq~  161 (236)
                      +++..+|.|+|.|+.|+. ++..|+.+|++.+      +++   |.+..+.+|+ |||+
T Consensus       102 ~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~-n~~~  159 (193)
T TIGR03882       102 RLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAI-NQRA  159 (193)
T ss_pred             HHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHH-HHHH
Confidence            456678999999999988 9999999999988      888   8888888888 7774

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=95.62  E-value=0.022  Score=51.32  Aligned_cols=108  Identities=11%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+|.|||||.+|..+++.|..-+.   .-..+.|.+.-...++      .     +..++-.--+.|....|++-|++-.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~------~-----~~~~~~~~l~~ll~~~~DlVVE~A~   71 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL------A-----GRVALLDGLPGLLAWRPDLVVEAAG   71 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh------h-----ccCcccCCHHHHhhcCCCEEEECCC
Confidence            478999999999999999875433   2233444433111122      1     1111111134444566776666532


Q ss_pred             -cCCCcchhhhcC-CCcEEEEcCC---CHHHHHHHHHHHHHcCCcEE
Q psy9587         194 -TKVDEISEEFVH-GFDVVIATSC---NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 -~~l~~~~~~~l~-~~DlVI~~~d---~~~~r~~In~~c~~~~ip~I  235 (236)
                       .-+.+..+..++ +.|+++.+..   +......|.+.|++.+..++
T Consensus        72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~  118 (267)
T PRK13301         72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIR  118 (267)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEE
Confidence             333344566666 8999998865   55678889999998876553

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.59  E-value=0.038  Score=50.13  Aligned_cols=31  Identities=16%  Similarity=0.144  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|+|+|++|+.++-.|+++|. .+++++..
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            58999999999999999999996 58888864

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.59  E-value=0.073  Score=48.50  Aligned_cols=75  Identities=13%  Similarity=0.007  Sum_probs=53.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+|+|+|+|+.|...++.+.. .|+.++.++|.+                    ..|++.+++++.....  .+.  .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~--------------------~~~a~~~a~~~~~~~~--~~~--~  179 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT--------------------AASAAAFCAHARALGP--TAE--P  179 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC--------------------HHHHHHHHHHHHhcCC--eeE--E
Confidence            44689999999999999999975 678888887632                    2367777877765422  222  1


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNP  217 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~  217 (236)
                          ....+.+.++|+||.|+.+.
T Consensus       180 ----~~~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        180 ----LDGEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             ----CCHHHHhhcCCEEEEccCCC
Confidence                11245678999999998654

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.58  E-value=0.055  Score=48.45  Aligned_cols=103  Identities=16%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCc----------eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK----------SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN  182 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg----------~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~  182 (236)
                      .++..+|+++|+|+.|.-+++.|..+|+.          +|.++|..-+=..+-   .      ++...|... ++.   
T Consensus        22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r---~------~l~~~~~~~-~~~---   88 (254)
T cd00762          22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR---K------ETCPNEYHL-ARF---   88 (254)
T ss_pred             ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC---C------ccCHHHHHH-HHH---
Confidence            46678999999999999999999999997          899999775432221   1      122222221 111   


Q ss_pred             hCCCceEEEEecCCCcchhhhcC--CCcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587         183 LNPNVEVTSNETKVDEISEEFVH--GFDVVIATSC--NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       183 inp~v~I~~~~~~l~~~~~~~l~--~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++.       ... ..-.+.++  +.|++|....  +.=+...|..++.....|+||
T Consensus        89 ~~~~-------~~~-~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF  138 (254)
T cd00762          89 ANPE-------RES-GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF  138 (254)
T ss_pred             cCcc-------ccc-CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence            1111       000 11134455  6788876643  445667777777777778775

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.57  E-value=0.1  Score=45.20  Aligned_cols=81  Identities=6%  Similarity=0.024  Sum_probs=48.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCc---eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVK---SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg---~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ..+|+|||+|.+|..++..|+..|..   .+.+++           |+        ...|++.++    +..+ +.  ..
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~-----------~~--------~~~~~~~~~----~~~~-~~--~~   57 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSN-----------RS--------NVEKLDQLQ----ARYN-VS--TT   57 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEEC-----------CC--------CHHHHHHHH----HHcC-cE--Ee
Confidence            35789999999999999999988732   233322           10        011222222    2221 22  11


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                           ....+.++++|+||.|+.+...+..+.++.
T Consensus        58 -----~~~~~~~~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         58 -----TDWKQHVTSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             -----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence                 112345678999999998877777666665

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.54  E-value=0.045  Score=49.39  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEecC-
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNETK-  195 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~~-  195 (236)
                      +|.|||+|..|+.++.+|+..|.. ++++|.+.-....+ .        +.|..-+....+.+... ++++-+...+.. 
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~-~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~   71 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEAL-A--------EEGATGADSLEELVAKLPAPRVVWLMVPAGE   71 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHH-H--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCc
Confidence            588999999999999999999964 88888764222222 0        01111111122222222 345444444432 


Q ss_pred             CCcc----hhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEI----SEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~----~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ....    -...++.-++||++. .++.....+.+.+.+.|+-|+
T Consensus        72 ~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~  116 (301)
T PRK09599         72 ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV  116 (301)
T ss_pred             HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence            1111    122344557888885 456666677888888887664

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.54  E-value=0.021  Score=52.54  Aligned_cols=33  Identities=12%  Similarity=0.026  Sum_probs=28.6

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeC
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~  148 (236)
                      ..+|.|||+ |.||+.+|..|+..|+-      +|.|+|-
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            357899999 99999999999998884      5999884

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.52  E-value=0.1  Score=47.03  Aligned_cols=32  Identities=28%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|.|||+|.+|+.+|..|+..|.+++.|+|-
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            46899999999999999999998669999986

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.50  E-value=0.14  Score=48.16  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+|.+|..+++.|...|.. ++++|.+.-                    +++    .+.+ .  ..+.....+..
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~~--------------------~~~----~~~~-~--~~~~~~~gd~~   53 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTDEE--------------------RLR----RLQD-R--LDVRTVVGNGS   53 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-EEEEECCHH--------------------HHH----HHHh-h--cCEEEEEeCCC
Confidence            588999999999999999998875 778875331                    111    1111 0  12333333333


Q ss_pred             cch--h-hhcCCCcEEEEcCCCHHHHHHHHHHHHHc
Q psy9587         198 EIS--E-EFVHGFDVVIATSCNPNQLIKIDDFCRSK  230 (236)
Q Consensus       198 ~~~--~-~~l~~~DlVI~~~d~~~~r~~In~~c~~~  230 (236)
                      +..  . ..+.++|.||.++++......+...|+..
T Consensus        54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~   89 (453)
T PRK09496         54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL   89 (453)
T ss_pred             CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence            221  2 22678999999988877777777777775

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=95.45  E-value=0.041  Score=50.55  Aligned_cols=75  Identities=17%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      +|.|||+ |.||+.+|..|+..|+ .+|.|+|-.      .                ++..+-.|....+.+++......
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~------~----------------a~g~alDL~~~~~~~~i~~~~~~   59 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV------N----------------TPGVAADLSHINTPAKVTGYLGP   59 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC------c----------------cceeehHhHhCCCcceEEEecCC
Confidence            5789999 9999999999999997 579999955      1                11112223333334455543110


Q ss_pred             CCcchhhhcCCCcEEEEcCCC
Q psy9587         196 VDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       196 l~~~~~~~l~~~DlVI~~~d~  216 (236)
                        ..-.+-++++|+||.+...
T Consensus        60 --~~~y~~~~daDivvitaG~   78 (310)
T cd01337          60 --EELKKALKGADVVVIPAGV   78 (310)
T ss_pred             --CchHHhcCCCCEEEEeCCC
Confidence              0013557899999888653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.42  E-value=0.085  Score=50.04  Aligned_cols=93  Identities=15%  Similarity=0.103  Sum_probs=54.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC-C
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK-V  196 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~-l  196 (236)
                      +|+|+|+|+.|..+|+.|...|. .+++.|.....                   +...+...|.+.  .+++.  ... .
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~-------------------~~~~~~~~l~~~--gi~~~--~g~~~   57 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP-------------------ELLERQQELEQE--GITVK--LGKPL   57 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch-------------------hhHHHHHHHHHc--CCEEE--ECCcc
Confidence            58999999999999999999997 58887743211                   112223345443  33432  221 1


Q ss_pred             Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .... ...+.++|+||.+..-.... .+-..|++.++|++
T Consensus        58 ~~~~~~~~~~~~d~vv~s~gi~~~~-~~~~~a~~~~i~v~   96 (459)
T PRK02705         58 ELESFQPWLDQPDLVVVSPGIPWDH-PTLVELRERGIEVI   96 (459)
T ss_pred             chhhhhHHhhcCCEEEECCCCCCCC-HHHHHHHHcCCcEE
Confidence            1001 12467899998865432222 23445567788775

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=95.42  E-value=0.054  Score=51.31  Aligned_cols=79  Identities=14%  Similarity=0.071  Sum_probs=54.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCce------EEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKS------VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PN  186 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~------I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~  186 (236)
                      +..+|.|||+ |.||+.+|-.|+..|+-.      |+|+|.|.                  .+.|++..+-.|.... |.
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~------------------~~~~a~g~a~DL~d~a~~~  104 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER------------------SKEALEGVAMELEDSLYPL  104 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc------------------cchhhhHHHHHHHHhhhhh
Confidence            4578999999 999999999999999853      66666433                  3345666666666654 43


Q ss_pred             c-eEEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         187 V-EVTSNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       187 v-~I~~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      . ++.....     +.+-++++|+||.+...
T Consensus       105 ~~~v~i~~~-----~y~~~kdaDIVVitAG~  130 (387)
T TIGR01757       105 LREVSIGID-----PYEVFEDADWALLIGAK  130 (387)
T ss_pred             cCceEEecC-----CHHHhCCCCEEEECCCC
Confidence            2 2222222     34568999999988653

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>KOG0069|consensus

Probab=95.41  E-value=0.061  Score=50.02  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=51.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .+..++|+|+|+|+||.++|+.|...| ..| .+.          +|+-..         -+...    +.+..      
T Consensus       159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i-~y~----------~r~~~~---------~~~~~----~~~~~------  207 (336)
T KOG0069|consen  159 DLEGKTVGILGLGRIGKAIAKRLKPFG-CVI-LYH----------SRTQLP---------PEEAY----EYYAE------  207 (336)
T ss_pred             cccCCEEEEecCcHHHHHHHHhhhhcc-cee-eee----------cccCCc---------hhhHH----Hhccc------
Confidence            567899999999999999999999977 433 322          222010         01111    11111      


Q ss_pred             ecCCCcchhhhcCCCcEEEEc-CCCHHHHHHHHHHHH
Q psy9587         193 ETKVDEISEEFVHGFDVVIAT-SCNPNQLIKIDDFCR  228 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~-~d~~~~r~~In~~c~  228 (236)
                          .....+++.++|+||.| ..+.+++..+|+-.-
T Consensus       208 ----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~  240 (336)
T KOG0069|consen  208 ----FVDIEELLANSDVIVVNCPLTKETRHLINKKFI  240 (336)
T ss_pred             ----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHH
Confidence                12235678889987655 588999999987443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.39  E-value=0.047  Score=49.50  Aligned_cols=33  Identities=12%  Similarity=-0.019  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|+|+|++|+.++..|+.+|. .++++..+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            468999999999999999999995 577887665

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.36  E-value=0.036  Score=50.73  Aligned_cols=29  Identities=17%  Similarity=0.162  Sum_probs=25.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|+|+|+|++||.++-.|+++| ..++++-
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~   30 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAG-HDVTLLV   30 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence            5899999999999999999999 6666643

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=95.35  E-value=0.036  Score=51.03  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|.|||+|.||+.+|..|+.-+++ .+.|+|-.
T Consensus         2 KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             eEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence            588999999999999999999999 99999943

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=95.35  E-value=0.048  Score=49.64  Aligned_cols=71  Identities=17%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             EEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc--eEEEEecCCC
Q psy9587         121 TGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV--EVTSNETKVD  197 (236)
Q Consensus       121 IVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v--~I~~~~~~l~  197 (236)
                      |||+|.||+.+|..|+..|+ ++|.|+|-.                    ..|++..+..|....+..  .++...    
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~--------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~----   56 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN--------------------KDKAEGEAMDLQHAASFLPTPKKIRS----   56 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------CChhhHHHHHHHHhhcccCCCeEEec----
Confidence            68999999999999999998 469998831                    224555566666654322  122221    


Q ss_pred             cchhhhcCCCcEEEEcCCC
Q psy9587         198 EISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~  216 (236)
                       .+.+-++++|+||.+...
T Consensus        57 -~~~~~~~daDivVitag~   74 (299)
T TIGR01771        57 -GDYSDCKDADLVVITAGA   74 (299)
T ss_pred             -CCHHHHCCCCEEEECCCC
Confidence             123568999999988753

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.33  E-value=0.065  Score=51.56  Aligned_cols=34  Identities=18%  Similarity=-0.005  Sum_probs=29.7

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            345679999999999999999999998 7888883

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.31  E-value=0.012  Score=52.68  Aligned_cols=33  Identities=21%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|||+|.+|+.+|..|+..|.. ++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCH
Confidence            4689999999999999999999974 88888664

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.30  E-value=0.018  Score=47.35  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=56.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC-
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK-  195 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~-  195 (236)
                      .+|.+||+|..|+.++++|+..|.. ++++|.+.-....+ ...        |-..++..++.+.+-  ++-+...... 
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~-~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~   69 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEAL-AEA--------GAEVADSPAEAAEQA--DVVILCVPDDD   69 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHH-HHT--------TEEEESSHHHHHHHB--SEEEE-SSSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhh-HHh--------hhhhhhhhhhHhhcc--cceEeecccch
Confidence            3689999999999999999999986 78888553222222 100        111111122222222  2223322221 


Q ss_pred             -CCc---c--hhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 -VDE---I--SEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 -l~~---~--~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                       +.+   .  -...+..=++||+++ .+++....+.+.+..+|+.||
T Consensus        70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v  116 (163)
T PF03446_consen   70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV  116 (163)
T ss_dssp             HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred             hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence             000   0  112234457788775 578889999999999887765

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.29  E-value=0.052  Score=49.01  Aligned_cols=33  Identities=15%  Similarity=0.134  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.++..|...|. .+++++|.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            468999999999999999999997 468888854

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.28  E-value=0.069  Score=50.32  Aligned_cols=93  Identities=15%  Similarity=0.039  Sum_probs=61.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ...+|+|+|+|.+|..+++.|...|.. ++++|.|.=.                        .+.+.+..+.+.  ...+
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~~------------------------~~~~~~~~~~~~--~i~g  282 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPER------------------------AEELAEELPNTL--VLHG  282 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHH------------------------HHHHHHHCCCCe--EEEC
Confidence            456899999999999999999998886 7888855311                        112222222322  3333


Q ss_pred             CCCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         195 KVDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       195 ~l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      +.....   ...+.++|.||.++++......+...|++.+.+-
T Consensus       283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~  325 (453)
T PRK09496        283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKK  325 (453)
T ss_pred             CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCe
Confidence            333221   2346789999999887777777777888877653

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.28  E-value=0.17  Score=45.35  Aligned_cols=36  Identities=25%  Similarity=0.162  Sum_probs=32.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|.|.|.+|+.+++.|...|..-+.+.|.
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467789999999999999999999999887778773

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.26  E-value=0.085  Score=50.34  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=63.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      +++..+|++.|+|+.|..+++.|..+|+.  +|.++|.--+-..+-   .-+    +.++.|...+.+......   +  
T Consensus       196 ~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r---~~~----~~~~~k~~~a~~~~~~~~---~--  263 (432)
T COG0281         196 KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGR---EDL----TMNQKKYAKAIEDTGERT---L--  263 (432)
T ss_pred             CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCC---ccc----ccchHHHHHHHhhhcccc---c--
Confidence            46677899999999999999999999998  999999554322222   100    245566655433322221   1  


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEEC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I~  236 (236)
                                .+.+.+.|++|.|... .-+..++.+++..   |+||
T Consensus       264 ----------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIf  297 (432)
T COG0281         264 ----------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIF  297 (432)
T ss_pred             ----------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEe
Confidence                      1145678888877653 4455566666655   6654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.26  E-value=0.05  Score=48.61  Aligned_cols=31  Identities=13%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|...|. ++.++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            58899999999999999999986 58888864

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.21  E-value=0.13  Score=47.30  Aligned_cols=75  Identities=15%  Similarity=0.096  Sum_probs=51.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|+|+|+.|...+..|.. .|+.++++++.+                    ..|++.+++++++.. .+++.... 
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~--------------------~~~a~~l~~~~~~~~-g~~v~~~~-  189 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD--------------------AAKAEAYAADLRAEL-GIPVTVAR-  189 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC--------------------HHHHHHHHHHHhhcc-CceEEEeC-
Confidence            3579999999999999999985 578899997632                    126667777766433 23333221 


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                          .-.+.+.++|+||.|+..
T Consensus       190 ----d~~~al~~aDiVi~aT~s  207 (330)
T PRK08291        190 ----DVHEAVAGADIIVTTTPS  207 (330)
T ss_pred             ----CHHHHHccCCEEEEeeCC
Confidence                123556789999998765

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.20  E-value=0.059  Score=47.71  Aligned_cols=32  Identities=16%  Similarity=0.112  Sum_probs=27.2

Q ss_pred             EEEEcC-ChhHHHHHHHHHHhC--C-ceEEEeeCCc
Q psy9587         119 YSTGPL-TRVGAEIAKNIILSG--V-KSVCLLDSGV  150 (236)
Q Consensus       119 VlIVG~-GgvGsevak~La~~G--V-g~I~LvD~D~  150 (236)
                      |.|||+ |.+|+.++..|+..|  . .+|.|+|-+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~   36 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE   36 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence            578999 999999999999998  4 5799998543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=95.19  E-value=0.1  Score=49.84  Aligned_cols=95  Identities=12%  Similarity=0.043  Sum_probs=62.4

Q ss_pred             eEEEEcCChhHH-HHHHHHHH----hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         118 VYSTGPLTRVGA-EIAKNIIL----SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGs-evak~La~----~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +|.|||+|++-+ .+.+.|+.    .++++|+|+|-|.  +..| ..-            ...+.+.+.+..+.++++..
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl-~~v------------~~~~~~~~~~~~~~~~v~~t   66 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKL-EIV------------GALAKRMVKKAGLPIKVHLT   66 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHH-HHH------------HHHHHHHHHhhCCCeEEEEe
Confidence            578999999755 56666665    5678999999875  3334 111            22344555666666666654


Q ss_pred             ecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i  232 (236)
                      ..     -.+.+.++|+||.+.  ...+.+..-.++..++|+
T Consensus        67 ~d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi  103 (419)
T cd05296          67 TD-----RREALEGADFVFTQIRVGGLEARALDERIPLKHGV  103 (419)
T ss_pred             CC-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence            33     346688999999885  455566566666666654

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.16  E-value=0.039  Score=46.11  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=33.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK  153 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~  153 (236)
                      .+..++|+|+|+|.||.++|+.|...|+ ++..+|...-..
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~   72 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE   72 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh
Confidence            5678899999999999999999999999 688888766543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.13  E-value=0.039  Score=49.20  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=26.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|+|+|++|+.++..|+..|. .+++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            48999999999999999999985 4888775

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.12  Score=49.13  Aligned_cols=90  Identities=11%  Similarity=0.056  Sum_probs=54.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      -.|+|+|.|+.|-.+|+.|...|.. ++..|...    +.              +    ..+.|.+.++.+.+..  +  
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~~----~~--------------~----~~~~l~~~~~g~~~~~--~--   59 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGIP-FAVMDSRE----QP--------------P----GLDTLAREFPDVELRC--G--   59 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCCe-EEEEeCCC----Cc--------------h----hHHHHHhhcCCcEEEe--C--
Confidence            4689999999999999999999984 78877322    01              0    1123444344444332  2  


Q ss_pred             CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                       ..+.+.+.++|+||.+..-+... -.-..++++++|++
T Consensus        60 -~~~~~~~~~~d~vV~sp~i~~~~-p~~~~a~~~~i~i~   96 (448)
T PRK03803         60 -GFDCELLVQASEIIISPGLALDT-PALRAAAAMGIEVI   96 (448)
T ss_pred             -CCChHHhcCCCEEEECCCCCCCC-HHHHHHHHCCCcEE
Confidence             12234567899998876322221 23445567788875

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.03  E-value=0.18  Score=43.41  Aligned_cols=85  Identities=14%  Similarity=0.123  Sum_probs=49.9

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC--CceEEEEec
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP--NVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp--~v~I~~~~~  194 (236)
                      +|+||| +|.+|+.++..|+..| .+++++|.+.                    .|++.+++.......  .+.+.....
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~--------------------~~~~~l~~~~~~~~~~~g~~~~~~~~   60 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL--------------------EKAEEAAAKALEELGHGGSDIKVTGA   60 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH--------------------HHHHHHHHHHHhhccccCCCceEEEe
Confidence            478997 8999999999999998 4677766322                    122222222211111  011111111


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                          ...+.+.++|+||.|+-.......+.++.
T Consensus        61 ----~~~ea~~~aDvVilavp~~~~~~~l~~l~   89 (219)
T TIGR01915        61 ----DNAEAAKRADVVILAVPWDHVLKTLESLR   89 (219)
T ss_pred             ----ChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence                12345678899999988777666666654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.03  E-value=0.11  Score=47.44  Aligned_cols=33  Identities=18%  Similarity=0.052  Sum_probs=28.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ....|+|+|+|++|..++..+...|+ ++..++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            45689999999999999999999999 5777775

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05442 malate dehydrogenase; Provisional

Probab=95.03  E-value=0.037  Score=51.12  Aligned_cols=33  Identities=12%  Similarity=0.060  Sum_probs=28.5

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEeeC
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGV-K-----SVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GV-g-----~I~LvD~  148 (236)
                      -.+|.|||+ |.+|+.+|..|+..|+ +     +|.|+|-
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            357899998 9999999999998888 4     6999884

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.02  E-value=0.048  Score=48.99  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|+|||+|.+|+.++..|+..|.. ++++|.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCE-EEEEECCH
Confidence            589999999999999999999875 78888653

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.01  E-value=0.37  Score=43.66  Aligned_cols=35  Identities=6%  Similarity=-0.002  Sum_probs=27.8

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhC-CceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSG-VKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~G-Vg~I~LvD~D  149 (236)
                      +.++|+|.| +|++|+.+++.|+..| ..+++++|.+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~   39 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD   39 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            346788888 5899999999999987 4578887744

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.98  E-value=0.097  Score=50.04  Aligned_cols=93  Identities=13%  Similarity=0.073  Sum_probs=56.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +.++|+|+|.|..|..+|+.|...|. .+++.|.+.-+  ..  .               ...+.|.+.  .+.+  ...
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~--~~--~---------------~~~~~l~~~--gi~~--~~~   68 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE--EL--G---------------EVSNELKEL--GVKL--VLG   68 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc--cc--h---------------HHHHHHHhC--CCEE--EeC
Confidence            44689999999999999999999997 58888854311  11  0               011223332  2222  222


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..   ..+.+.++|+||.+..-... .-+-..|++.+||++
T Consensus        69 ~~---~~~~~~~~dlVV~Spgi~~~-~p~~~~a~~~~i~i~  105 (458)
T PRK01710         69 EN---YLDKLDGFDVIFKTPSMRID-SPELVKAKEEGAYIT  105 (458)
T ss_pred             CC---ChHHhccCCEEEECCCCCCC-chHHHHHHHcCCcEE
Confidence            11   13445789999987532222 234555677888875

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.96  E-value=0.13  Score=46.64  Aligned_cols=32  Identities=13%  Similarity=-0.018  Sum_probs=27.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|+|+|..|+.+++.|+..|. .++++|.+
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            368999999999999999999996 57888854

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.95  E-value=0.14  Score=45.04  Aligned_cols=23  Identities=4%  Similarity=-0.044  Sum_probs=21.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV  140 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV  140 (236)
                      +|.|||+|.+|+.+++.|...|.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~   24 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPA   24 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC
Confidence            48999999999999999999885

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.94  E-value=0.11  Score=47.51  Aligned_cols=31  Identities=26%  Similarity=0.144  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|.|||+|.+|+.+|..|+..|.+.+.++|-
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            6899999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.84  E-value=0.19  Score=45.64  Aligned_cols=35  Identities=11%  Similarity=0.069  Sum_probs=30.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..++..+...|+.++.++|..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~  203 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS  203 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence            45689999999999999999999999888887743

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.26  Score=42.43  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+...++..++..+
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~   63 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDA--------------------ALAERAAAAIARDVAGARVLAV   63 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHhccCCceEEEE
Confidence            45678889994 69999999999999975 66766321                    2334445555544444455555


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~  214 (236)
                      ..++++..  ..       .+...|++|.+.
T Consensus        64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a   94 (260)
T PRK07063         64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNA   94 (260)
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence            55554321  11       123567777664

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.81  E-value=0.19  Score=48.47  Aligned_cols=34  Identities=15%  Similarity=0.057  Sum_probs=28.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|+|+|+.|..+|+.|...|. +++..|..
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   39 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR   39 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence            34578999999999999999999998 47887843

>PRK07680 late competence protein ComER; Validated

Probab=94.81  E-value=0.13  Score=45.67  Aligned_cols=31  Identities=10%  Similarity=0.121  Sum_probs=25.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~  148 (236)
                      +|.|||+|.+|+.++..|...|.   ..+.++|.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r   35 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR   35 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            47899999999999999999985   35666654

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.80  E-value=0.24  Score=45.81  Aligned_cols=20  Identities=25%  Similarity=0.124  Sum_probs=18.6

Q ss_pred             eEEEEcCChhHHHHHHHHHH
Q psy9587         118 VYSTGPLTRVGAEIAKNIIL  137 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~  137 (236)
                      +|.|+|+|.||..+++.|..
T Consensus         2 rVaIiGfG~VG~~va~~L~~   21 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKS   21 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHh
Confidence            58899999999999999987

>PRK09242 tropinone reductase; Provisional

Probab=94.73  E-value=0.4  Score=41.20  Aligned_cols=81  Identities=14%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++++|+|+ |++|..+++.|+..|.. +.+++.+.                    .+.+.+.+.+...+|..++..+
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~--------------------~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDA--------------------DALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCH--------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence            35568889985 79999999999999974 77766321                    1334456666666677777777


Q ss_pred             ecCCCcch---------hhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS---------EEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~---------~~~l~~~DlVI~~~d  215 (236)
                      ..++.+..         .+.+...|+||.+..
T Consensus        66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66665421         122456788887764

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.72  E-value=0.22  Score=44.92  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=26.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++++|.| .+|+|.++++.|+..|. ++.+++.
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R   46 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR   46 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            3456788888 55999999999999996 4666653

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.72  E-value=0.26  Score=43.86  Aligned_cols=35  Identities=9%  Similarity=-0.035  Sum_probs=30.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.++|+|+|+||+|..++..|+..|. +++++|.+.
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~  150 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV  150 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999996 799988653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN00106 malate dehydrogenase

Probab=94.72  E-value=0.17  Score=46.77  Aligned_cols=36  Identities=8%  Similarity=0.068  Sum_probs=31.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCc
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~  150 (236)
                      ...+|+|+|+ |.||+.++..|+..|. .+|.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3468999999 9999999999998888 4799999655

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.67  E-value=0.26  Score=43.90  Aligned_cols=34  Identities=24%  Similarity=0.095  Sum_probs=27.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            4557889999 57999999999999997 4666654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.64  E-value=0.086  Score=52.44  Aligned_cols=86  Identities=10%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|+. ++++|.|.-.                    +    +.+++.  .  ..++.++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~--------------------v----~~~~~~--g--~~v~~GDa  451 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISA--------------------V----NLMRKY--G--YKVYYGDA  451 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHH--------------------H----HHHHhC--C--CeEEEeeC
Confidence            4789999999999999999999996 8888966421                    1    122221  1  23444444


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      ++..   ..-++++|++|.++++.+....+-..+++.+
T Consensus       452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~  489 (601)
T PRK03659        452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF  489 (601)
T ss_pred             CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence            4322   2346789999999999999988888888764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.64  E-value=0.078  Score=48.22  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGA-DVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCC-cEEEEecHH
Confidence            58999999999999999999996 488888653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.62  E-value=0.045  Score=49.72  Aligned_cols=32  Identities=22%  Similarity=0.090  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|.|+|+|++|+.++..|+..|. .+++++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence            47899999999999999999994 478888654

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.60  E-value=0.22  Score=37.57  Aligned_cols=64  Identities=9%  Similarity=0.144  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHhhCCCceEEEE--ecCCCcch---hhhcCCCcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587         171 NRAKSSEARAQNLNPNVEVTSN--ETKVDEIS---EEFVHGFDVVIATSC--NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       171 ~Kaea~~~~L~~inp~v~I~~~--~~~l~~~~---~~~l~~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ......++.+.+.  +.+...+  ........   +..++++|+||..+|  +......+.+.|.+.+||++|
T Consensus        10 ~~~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~   80 (97)
T PF10087_consen   10 DRERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY   80 (97)
T ss_pred             ccHHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence            3445566667775  3466666  33333322   557889999999887  578899999999999999986

>KOG2014|consensus

Probab=94.57  E-value=0.011  Score=54.04  Aligned_cols=26  Identities=50%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             cccccChhhHHhhhhcccccCCCCCc
Q psy9587          11 TAMELTEDEAELYDRQIRLTPLPLWN   36 (236)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (236)
                      +++||||+|..|||||||+--|--|+
T Consensus         2 ~~~else~E~alYDRQIRLWG~~AQ~   27 (331)
T KOG2014|consen    2 KGEELSEQEIALYDRQIRLWGLEAQR   27 (331)
T ss_pred             chhhhhHHHHHHHHHHHHHccHHHHH
Confidence            57899999999999999986554444

>TIGR00065 ftsZ cell division protein FtsZ

Probab=94.48  E-value=0.24  Score=46.31  Aligned_cols=48  Identities=10%  Similarity=0.158  Sum_probs=34.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceE--EEeeCCc--ccccCCCCCccccCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSV--CLLDSGV--VTKEDVNTAQFLAPH  165 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I--~LvD~D~--Ve~sNL~~rq~l~~~  165 (236)
                      .+|.|||+||-||.++..|...|+..+  ..+|.|.  ++.++. .+.++++.
T Consensus        18 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a-~~ki~iG~   69 (349)
T TIGR00065        18 AKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKA-DKKILIGK   69 (349)
T ss_pred             CeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-CeEEEcCC
Confidence            568889999999999999999998644  4467775  443444 33344443

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=94.48  E-value=0.26  Score=44.92  Aligned_cols=47  Identities=11%  Similarity=0.126  Sum_probs=33.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCc--ccccCCCCCccccCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGV--VTKEDVNTAQFLAPH  165 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~--Ve~sNL~~rq~l~~~  165 (236)
                      +|.|||+||-|+.++..|.+.|+.  .+..+|.|.  ++.+.. .+-+++.+
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~-~~k~~ig~   52 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKA-PNKIQLGK   52 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCC-CcEEEcCC
Confidence            578899999999999999999986  355667765  333333 33334443

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.48  E-value=0.46  Score=40.53  Aligned_cols=90  Identities=18%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             EEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         119 YSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       119 VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      |+|+|+ |.+|..++..|...|.. ++++           .|..           .....+.|+..  .+++.  ..++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l-----------~R~~-----------~~~~~~~l~~~--g~~vv--~~d~~   53 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRAL-----------VRDP-----------SSDRAQQLQAL--GAEVV--EADYD   53 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEE-----------ESSS-----------HHHHHHHHHHT--TTEEE--ES-TT
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEE-----------Eecc-----------chhhhhhhhcc--cceEe--ecccC
Confidence            688995 89999999999996654 4442           2321           12233445543  44443  44554


Q ss_pred             cc-h-hhhcCCCcEEEEcCC---C--HHHHHHHHHHHHHcCCcEE
Q psy9587         198 EI-S-EEFVHGFDVVIATSC---N--PNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~~-~-~~~l~~~DlVI~~~d---~--~~~r~~In~~c~~~~ip~I  235 (236)
                      +. . .+.++++|.||.++.   .  ......+.+.|.+.|++.+
T Consensus        54 ~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~   98 (233)
T PF05368_consen   54 DPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF   98 (233)
T ss_dssp             -HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred             CHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence            32 2 567899999999887   3  4566788899999998775

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.47  E-value=0.43  Score=42.65  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|.|||+|.+|+.+++.|...|.   .++.++|.+.-                   .|.+    .+....+.+.+     
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~-------------------~~~~----~l~~~~~~~~~-----   54 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN-------------------EHFN----QLYDKYPTVEL-----   54 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH-------------------HHHH----HHHHHcCCeEE-----
Confidence            58899999999999999999883   45666653210                   1111    12222222221     


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                        .....+.+.++|+||.|+-+......+.++.
T Consensus        55 --~~~~~e~~~~aDvVilavpp~~~~~vl~~l~   85 (277)
T PRK06928         55 --ADNEAEIFTKCDHSFICVPPLAVLPLLKDCA   85 (277)
T ss_pred             --eCCHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence              1112345678899999988777777676664

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=94.46  E-value=0.1  Score=48.06  Aligned_cols=33  Identities=30%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|.|||+|..|+-+|..++.+|.. +++.|..
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence            46799999999999999999996665 8888865

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=94.42  E-value=0.35  Score=38.47  Aligned_cols=79  Identities=14%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|+|+| ++|+|-++++.|+..|..++.+++.+    .              -..+.+.+...+...+  .++.....+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~----~--------------~~~~~~~l~~~l~~~~--~~~~~~~~D   60 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS----E--------------DSEGAQELIQELKAPG--AKITFIECD   60 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS----C--------------HHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec----c--------------cccccccccccccccc--ccccccccc
Confidence            3578888 67999999999999999998888754    0              1124555666666544  566776666


Q ss_pred             CCcch---------hhhcCCCcEEEEcCC
Q psy9587         196 VDEIS---------EEFVHGFDVVIATSC  215 (236)
Q Consensus       196 l~~~~---------~~~l~~~DlVI~~~d  215 (236)
                      +....         .+.....|++|.|..
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~ld~li~~ag   89 (167)
T PF00106_consen   61 LSDPESIRALIEEVIKRFGPLDILINNAG   89 (167)
T ss_dssp             TTSHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            55321         123457899987764

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK13018 cell division protein FtsZ; Provisional

Probab=94.39  E-value=0.27  Score=46.48  Aligned_cols=71  Identities=8%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCc--ccccCCCCCccccCCC-----------cCCChHHHHHHHH
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGV--VTKEDVNTAQFLAPHE-----------DIGKNRAKSSEAR  179 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~--Ve~sNL~~rq~l~~~~-----------dIGk~Kaea~~~~  179 (236)
                      ...+|.|||+||-|+.++..|...|+.  .+..++.|.  ++.+.. ...++++..           ++|+.-++...+.
T Consensus        27 ~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a-~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~  105 (378)
T PRK13018         27 GNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKA-DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDE  105 (378)
T ss_pred             CCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCC-CcEEecCCccCCCCCCCCChHHHHHHHHHHHHH
Confidence            345788999999999999999999986  456677776  444444 333444331           2344445555555


Q ss_pred             HHhhCCC
Q psy9587         180 AQNLNPN  186 (236)
Q Consensus       180 L~~inp~  186 (236)
                      +++.-..
T Consensus       106 I~~~le~  112 (378)
T PRK13018        106 IKEVLKG  112 (378)
T ss_pred             HHHHhcC
Confidence            5555433

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.38  E-value=0.07  Score=48.39  Aligned_cols=35  Identities=11%  Similarity=0.032  Sum_probs=31.4

Q ss_pred             ccccceEEEEcCCh-hHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTR-VGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~Gg-vGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|+|.|+ +|..++..|...|. .+++++.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~  191 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS  191 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence            45678899999999 99999999999999 8999875

>PRK07574 formate dehydrogenase; Provisional

Probab=94.33  E-value=0.21  Score=47.30  Aligned_cols=36  Identities=14%  Similarity=0.106  Sum_probs=30.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~  224 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRH  224 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCC
Confidence            46778999999999999999999999985 6677743

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.28  E-value=0.069  Score=50.75  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=31.8

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +...+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            46678999999999999999999999999999874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=94.27  E-value=0.38  Score=46.10  Aligned_cols=93  Identities=12%  Similarity=0.018  Sum_probs=62.1

Q ss_pred             eEEEEcCChh-HHHHHHHHH----HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH-HhhCCCceEEE
Q psy9587         118 VYSTGPLTRV-GAEIAKNII----LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA-QNLNPNVEVTS  191 (236)
Q Consensus       118 ~VlIVG~Ggv-Gsevak~La----~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L-~~inp~v~I~~  191 (236)
                      +|.|||+|++ .-.+++.|+    ...+++|+|+|-|.   +-+    -          .+..+++++ .+..+.++++.
T Consensus         2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl----~----------~v~~l~~~~~~~~g~~~~v~~   64 (425)
T cd05197           2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERL----D----------IILTIAKRYVEEVGADIKFEK   64 (425)
T ss_pred             EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHH----H----------HHHHHHHHHHHhhCCCeEEEE
Confidence            5789999986 335666666    35568999999664   222    0          133344444 56666666666


Q ss_pred             EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i  232 (236)
                      ...     -.+-+.++|+||.+.  +..+.+..=.+++.++|+
T Consensus        65 ttD-----~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~  102 (425)
T cd05197          65 TMD-----LEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV  102 (425)
T ss_pred             eCC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCc
Confidence            543     346789999999885  677778777778888764

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.27  Score=41.87  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|+|.| .|++|..+++.|+..|. ++.+++.+.                    .+.+.+...+...+|..++.....+
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR-DLALCARRT--------------------DRLEELKAELLARYPGIKVAVAALD   61 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH--------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence            4678888 77999999999999995 577766432                    1223344555555666666666666


Q ss_pred             CCcch---------hhhcCCCcEEEEcC
Q psy9587         196 VDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       196 l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +++..         ...+...|+||.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a   89 (248)
T PRK08251         62 VNDHDQVFEVFAEFRDELGGLDRVIVNA   89 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55421         11234567777664

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.21  E-value=0.37  Score=45.05  Aligned_cols=95  Identities=11%  Similarity=0.042  Sum_probs=63.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc---cCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK---EDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~---sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ...|.|+||||+|-.+..-+..+|.++|.-+|-..-..   .-+ +-..++.+.+.+     -+.+.+.++.+       
T Consensus       186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f-GAT~~vn~~~~~-----~vv~~i~~~T~-------  252 (366)
T COG1062         186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF-GATHFVNPKEVD-----DVVEAIVELTD-------  252 (366)
T ss_pred             CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc-CCceeecchhhh-----hHHHHHHHhcC-------
Confidence            46899999999999999999999999999998543221   112 222222222222     13333333332       


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                                  .+.|.+|+|+.+......--+.|++-|.-++
T Consensus       253 ------------gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~  283 (366)
T COG1062         253 ------------GGADYAFECVGNVEVMRQALEATHRGGTSVI  283 (366)
T ss_pred             ------------CCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence                        1688899999998888777778887666544

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.21  E-value=0.27  Score=43.90  Aligned_cols=30  Identities=7%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHh-CCceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIILS-GVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~-GVg~I~LvD  147 (236)
                      +|+|+|||.+|..+++.|... ++.-..+++
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~   33 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIV   33 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence            689999999999999999875 444333444

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.20  E-value=0.57  Score=46.61  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=49.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-------CC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-------PN  186 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-------p~  186 (236)
                      ..++|+|.|+ |++|..+++.|+..|.. +++++.+.                    .|.+.+.+.+.++.       +.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~--------------------ekl~~l~~~l~~~~L~~~Ga~~~  137 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSA--------------------QRAESLVQSVKQMKLDVEGTQPV  137 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCH--------------------HHHHHHHHHhhhhcccccccccc
Confidence            4567899995 89999999999999974 55544321                    12222333332211       11


Q ss_pred             ceEEEEecCCCcch--hhhcCCCcEEEEcCC
Q psy9587         187 VEVTSNETKVDEIS--EEFVHGFDVVIATSC  215 (236)
Q Consensus       187 v~I~~~~~~l~~~~--~~~l~~~DlVI~~~d  215 (236)
                      -+++.+..++.+..  ...+.++|+||.|..
T Consensus       138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG  168 (576)
T PLN03209        138 EKLEIVECDLEKPDQIGPALGNASVVICCIG  168 (576)
T ss_pred             CceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence            23556666665432  445788999998864

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.20  E-value=0.089  Score=48.88  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=27.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|+|||+|.+|+.+++.|...|. .+.++|.|.
T Consensus         2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~   33 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP   33 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence            58999999999999999999997 466777543

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.18  E-value=0.35  Score=45.85  Aligned_cols=92  Identities=11%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..++|+|+|.|+.|..+|+.|+..|.. +++.|.+...                   .   ..++|.+....+.  .+..
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~-v~~~d~~~~~-------------------~---~~~~l~~~~~gi~--~~~g   58 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAE-VAAYDAELKP-------------------E---RVAQIGKMFDGLV--FYTG   58 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCc-------------------h---hHHHHhhccCCcE--EEeC
Confidence            346789999999999999999999974 7777743210                   0   0122433222333  3332


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..   ....+.++|+||.+..-.... -+-..|+++++|++
T Consensus        59 ~~---~~~~~~~~d~vv~spgi~~~~-p~~~~a~~~~i~v~   95 (445)
T PRK04308         59 RL---KDALDNGFDILALSPGISERQ-PDIEAFKQNGGRVL   95 (445)
T ss_pred             CC---CHHHHhCCCEEEECCCCCCCC-HHHHHHHHcCCcEE
Confidence            22   223456899999886432222 23445577888875

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.18  E-value=0.073  Score=44.80  Aligned_cols=34  Identities=21%  Similarity=0.139  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      +|+|||+|..|..+|..+++.|.. ++++|.+.-.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEA   34 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHH
Confidence            489999999999999999999976 9999976543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.17  E-value=0.34  Score=43.21  Aligned_cols=24  Identities=13%  Similarity=0.025  Sum_probs=21.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV  140 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV  140 (236)
                      -+|.+||+|..|..+++.|...|+
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~   27 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANV   27 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC
Confidence            368999999999999999999983

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.46  Score=41.06  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=26.8

Q ss_pred             ccceEEEEcC-C-hhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPL-T-RVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~-G-gvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++++|.|+ | |+|..+++.|+..|.. +.+.|
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~   49 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD   49 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence            4568899996 5 7999999999999986 66665

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.17  E-value=0.13  Score=50.38  Aligned_cols=33  Identities=12%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      -+|+|+|+|.+|..+++.|...|.. ++++|.|.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~  450 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSR  450 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCC-EEEEECCH
Confidence            4688999999999999999999975 88889664

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.16  E-value=0.24  Score=46.66  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=32.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      +|.|||+|-+|..+|..|+..|.. ++++|.+.-....+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~-V~~~d~~~~~v~~l   39 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHE-VTGVDIDQEKVDKL   39 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCe-EEEEECCHHHHHHh
Confidence            488999999999999999999975 88899876555556

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.14  E-value=0.65  Score=40.11  Aligned_cols=81  Identities=17%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++++|.|+ ||+|.++++.|+..|.. +.+++.+.                    .+.+.+.+.+.+.++..++..+
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~   64 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE--------------------ERLASAEARLREKFPGARLLAA   64 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH--------------------HHHHHHHHHHHhhCCCceEEEE
Confidence            45578899996 58999999999999986 66666321                    2334455566666666666666


Q ss_pred             ecCCCcch---------hhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS---------EEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~---------~~~l~~~DlVI~~~d  215 (236)
                      ..++.+..         .+.+...|++|.+..
T Consensus        65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   96 (265)
T PRK07062         65 RCDVLDEADVAAFAAAVEARFGGVDMLVNNAG   96 (265)
T ss_pred             EecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            65655421         112345788887753

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.13  E-value=0.14  Score=49.68  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|.|||+|.+|+.+|.+|+..|. .++++|.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            468999999999999999999998 588988653

>PLN02688 pyrroline-5-carboxylate reductase

Probab=94.12  E-value=0.28  Score=43.08  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|.+||+|.+|+.+++.|...|.   ..|++++          +|.         ..|++.    +.+.  .+.+.    
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~----------~r~---------~~~~~~----~~~~--g~~~~----   52 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTAD----------DSN---------PARRDV----FQSL--GVKTA----   52 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe----------CCC---------HHHHHH----HHHc--CCEEe----
Confidence            47899999999999999999885   2455542          111         112222    2222  22221    


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                         ....+..+++|+||.|+.+......+.+++
T Consensus        53 ---~~~~e~~~~aDvVil~v~~~~~~~vl~~l~   82 (266)
T PLN02688         53 ---ASNTEVVKSSDVIILAVKPQVVKDVLTELR   82 (266)
T ss_pred             ---CChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence               112344567899999986666666665553

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.08  E-value=0.42  Score=42.70  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHH-hCCceEEEee
Q psy9587         118 VYSTGP-LTRVGAEIAKNIIL-SGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~-~GVg~I~LvD  147 (236)
                      +|+|+| +|..|..+++.+.. .++.-+.++|
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d   34 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE   34 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            689999 59999999999985 5666667777

>PRK09330 cell division protein FtsZ; Validated

Probab=94.05  E-value=0.32  Score=46.10  Aligned_cols=98  Identities=13%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCce--EEEeeCCc--ccccCCCCCccccCCCc-----------CCChHHHHHHHHH
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKS--VCLLDSGV--VTKEDVNTAQFLAPHED-----------IGKNRAKSSEARA  180 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~--I~LvD~D~--Ve~sNL~~rq~l~~~~d-----------IGk~Kaea~~~~L  180 (236)
                      ..+|-|||+||-|+.++..|...|+..  +..++.|.  ++.+.. ..-+++...-           +|+-=++...+.+
T Consensus        13 ~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a-~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~e~I   91 (384)
T PRK09330         13 GAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKA-PVKIQLGEKLTRGLGAGANPEVGRKAAEESREEI   91 (384)
T ss_pred             CCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCC-CeEEEcCCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence            356788999999999999999999864  55556655  444444 3333443321           1111111111111


Q ss_pred             HhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCC------CHHHHHHHHHHHHHcCCcEE
Q psy9587         181 QNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC------NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       181 ~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d------~~~~r~~In~~c~~~~ip~I  235 (236)
                                          .+.++++|+||.+..      +-.+. .|.+++++.+++.|
T Consensus        92 --------------------~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltv  131 (384)
T PRK09330         92 --------------------REALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTV  131 (384)
T ss_pred             --------------------HHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEE
Confidence                                234567888765532      23333 78888888887654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.02  E-value=0.36  Score=48.33  Aligned_cols=34  Identities=18%  Similarity=0.056  Sum_probs=30.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|||+|..|-..|..|++.|.. ++++|.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            457899999999999999999999986 8998864

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.01  E-value=0.11  Score=39.76  Aligned_cols=33  Identities=12%  Similarity=0.108  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhC--CceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSG--VKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~G--Vg~I~LvD~D~  150 (236)
                      +|+|||+|..|...+..+...+  +.-..++|.+.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~   36 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP   36 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence            5899999999999999999883  33345667654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN03139 formate dehydrogenase; Provisional

Probab=93.98  E-value=0.19  Score=47.56  Aligned_cols=36  Identities=11%  Similarity=-0.003  Sum_probs=31.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~  231 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRL  231 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCC
Confidence            57788999999999999999999999986 6667754

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.97  E-value=0.4  Score=43.27  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .+...++|.| .+|||-++|+.|++-|.. +.|+-           |.         +.|-+.++++|+..+ .+++..+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLva-----------R~---------~~kL~~la~~l~~~~-~v~v~vi   61 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVA-----------RR---------EDKLEALAKELEDKT-GVEVEVI   61 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEe-----------Cc---------HHHHHHHHHHHHHhh-CceEEEE
Confidence            3567889999 569999999999999988 44543           33         347788899999888 8899999


Q ss_pred             ecCCCcch-hh-----hc---CCCcEEEEcCC
Q psy9587         193 ETKVDEIS-EE-----FV---HGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~-~~-----~l---~~~DlVI~~~d  215 (236)
                      +-++++.+ .+     +.   -..|++|.+.+
T Consensus        62 ~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          62 PADLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             ECcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            88887643 11     11   25899998753

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.94  E-value=0.42  Score=46.92  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=30.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|+|||+|.+|-..|..|.+.|.. ++++|...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAGP  170 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            457899999999999999999999985 88998543

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.92  E-value=0.13  Score=41.23  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=44.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ..+|.|||+|-+|..+++.|...|.. |.-+-          +|.             ...++++...-+...+..    
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~----------srs-------------~~sa~~a~~~~~~~~~~~----   61 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHE-VVGVY----------SRS-------------PASAERAAAFIGAGAILD----   61 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSE-EEEES----------SCH-------------H-HHHHHHC--TT---------
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE----------eCC-------------cccccccccccccccccc----
Confidence            36789999999999999999999965 32221          222             123444555544432221    


Q ss_pred             CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                          ..+.+..+|+||.|+-+........+++.
T Consensus        62 ----~~~~~~~aDlv~iavpDdaI~~va~~La~   90 (127)
T PF10727_consen   62 ----LEEILRDADLVFIAVPDDAIAEVAEQLAQ   90 (127)
T ss_dssp             ----TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred             ----cccccccCCEEEEEechHHHHHHHHHHHH
Confidence                12456889999999855554444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.89  E-value=0.14  Score=47.29  Aligned_cols=93  Identities=12%  Similarity=0.029  Sum_probs=53.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|..|+.++..|+..|  .++++..+.-....+ +.... .....+..         .++.+.  +..     
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i-~~~~~-~~~~l~~~---------~~l~~~--i~~-----   67 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDI-NDNHR-NSRYLGND---------VVLSDT--LRA-----   67 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHH-HhcCC-CcccCCCC---------cccCCC--eEE-----
Confidence            46899999999999999999998  456665443222233 22110 01111100         001111  111     


Q ss_pred             CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         197 DEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      +....+.+.++|+||.|+-+...+..+.++...
T Consensus        68 t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~  100 (341)
T PRK12439         68 TTDFAEAANCADVVVMGVPSHGFRGVLTELAKE  100 (341)
T ss_pred             ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhh
Confidence            111224467889999999888888777777654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.87  E-value=0.26  Score=46.22  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=28.5

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|+||| +|.+|+.+++.|...|.. ++++|.+
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~  131 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD  131 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence            36799998 999999999999999954 8888854

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.84  E-value=0.3  Score=47.11  Aligned_cols=77  Identities=8%  Similarity=0.049  Sum_probs=50.6

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHh-------CCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILS-------GVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-  184 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~-------GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-  184 (236)
                      +..+|.|||+ |.||+.+|..|+..       |+. +|.++|                    +.+.|++..+-.|..-. 
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD--------------------~~~~~a~G~amDL~daa~  158 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE--------------------RSKQALEGVAMELEDSLY  158 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc--------------------CCcchhHHHHHHHHHhhh
Confidence            4578999999 99999999999987       442 355544                    23345566666666554 


Q ss_pred             CCc-eEEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         185 PNV-EVTSNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       185 p~v-~I~~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      |.. +|.....     +.+-++++|+||.+...
T Consensus       159 ~~~~~v~i~~~-----~ye~~kdaDiVVitAG~  186 (444)
T PLN00112        159 PLLREVSIGID-----PYEVFQDAEWALLIGAK  186 (444)
T ss_pred             hhcCceEEecC-----CHHHhCcCCEEEECCCC
Confidence            332 2222222     34668999999988754

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.84  E-value=0.097  Score=47.13  Aligned_cols=40  Identities=10%  Similarity=0.067  Sum_probs=33.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      ++|+|+|+||.+..++..|...|+.+|+|++.+.-....|
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            4789999999999999999999999999998765333333

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.83  E-value=0.4  Score=42.96  Aligned_cols=78  Identities=13%  Similarity=0.091  Sum_probs=49.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|.+||+|-+|..+++.|...|.   .+|.++|.+.                    .+++.    +.+.. .++  ..  
T Consensus         4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~--------------------~~~~~----l~~~~-g~~--~~--   54 (272)
T PRK12491          4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV--------------------SNLKN----ASDKY-GIT--IT--   54 (272)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH--------------------HHHHH----HHHhc-CcE--Ee--
Confidence            58999999999999999999885   2355544211                    12222    22211 122  11  


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                         ....+.+.++|+||.|+-+......+.++.
T Consensus        55 ---~~~~e~~~~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         55 ---TNNNEVANSADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             ---CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence               112345678899999998777666676655

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.80  E-value=0.46  Score=49.89  Aligned_cols=94  Identities=11%  Similarity=0.012  Sum_probs=56.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH--HHHHHHHHHhhCCCceEEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR--AKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K--aea~~~~L~~inp~v~I~~~  192 (236)
                      +.++|+|||+|..|...|..|++.|.. ++|+|..    ..+ +-...+.-.+.-.+|  ++.-.+.+.+.  .+++...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~----~~~-GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n  376 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF----HDL-GGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKN  376 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC----CCC-CceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEe
Confidence            467899999999999999999999985 8898854    234 333333322333344  22233344444  3444332


Q ss_pred             ecCCCcch-hhhcC-CCcEEEEcCCC
Q psy9587         193 ETKVDEIS-EEFVH-GFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~-~~~l~-~~DlVI~~~d~  216 (236)
                      ..--.... .++.+ +||.||.|++.
T Consensus       377 ~~vG~dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        377 FVVGKTATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             EEeccEEeHHHhccccCCEEEEeCCC
Confidence            21101112 33444 69999999875

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.79  E-value=0.2  Score=45.76  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=29.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3568999999999999999998999987877764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG0022|consensus

Probab=93.76  E-value=0.3  Score=45.34  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC--Ccccc-cCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS--GVVTK-EDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~--D~Ve~-sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ..+.|+|+|+|++|..+++---..|.++|.=+|-  |.++. .-+ +---+.++.|.-+    .+.+.|.++-       
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f-GaTe~iNp~d~~~----~i~evi~EmT-------  259 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF-GATEFINPKDLKK----PIQEVIIEMT-------  259 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc-CcceecChhhccc----cHHHHHHHHh-------
Confidence            3478999999999999999999999999998882  22221 111 1111222222222    1222222221       


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCcEE
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKISL  235 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip~I  235 (236)
                                  -.++|.-++|+.+.+....--+.|++- |+.++
T Consensus       260 ------------dgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~  292 (375)
T KOG0022|consen  260 ------------DGGVDYSFECIGNVSTMRAALESCHKGWGKSVV  292 (375)
T ss_pred             ------------cCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence                        157899999999999888888888765 55443

>PLN02477 glutamate dehydrogenase

Probab=93.76  E-value=0.49  Score=45.18  Aligned_cols=37  Identities=24%  Similarity=0.120  Sum_probs=32.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|+|.||..+|+.|...|..-+.+.|.+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4677899999999999999999999998877687744

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=93.74  E-value=0.12  Score=46.39  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=26.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh--CCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D  149 (236)
                      +..+|.|||+|.+|..++++|...  |+.-..++|.+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~   41 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD   41 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence            346799999999999999999864  44433455654

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=93.69  E-value=0.32  Score=43.05  Aligned_cols=30  Identities=17%  Similarity=0.160  Sum_probs=24.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC---ceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD  147 (236)
                      +|+|||+|.+|+.+++.|...|.   .++.+.|
T Consensus         5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~   37 (260)
T PTZ00431          5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHT   37 (260)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCCCcceEEEEC
Confidence            58999999999999999999874   2355554

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.68  E-value=0.24  Score=47.80  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ...+|+|+|+|..|..+++.|...| ..+++.|..... .+. .-+                    ....++++  ...+
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~-~~~--------------------~~~~~~i~--~~~g   60 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGL-AAQ--------------------PLLLEGIE--VELG   60 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cch-hhh--------------------hhhccCce--eecC
Confidence            3578999999999999999999999 558898866554 333 111                    11122222  2222


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..   ..+.+..+|+||-+-.-+..-. +-+.+++.|+|++
T Consensus        61 ~~---~~~~~~~~d~vV~SPGi~~~~p-~v~~A~~~gi~i~   97 (448)
T COG0771          61 SH---DDEDLAEFDLVVKSPGIPPTHP-LVEAAKAAGIEII   97 (448)
T ss_pred             cc---chhccccCCEEEECCCCCCCCH-HHHHHHHcCCcEE
Confidence            22   1245688999998754221111 5556777888775

>PRK06199 ornithine cyclodeaminase; Validated

Probab=93.68  E-value=0.5  Score=44.55  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc-eEEEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV-EVTSN  192 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v-~I~~~  192 (236)
                      ..+++|+|+|.-+-.-++.++..  ++.++.++|.+                    ..|++.+++++.+..+.+ ++...
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~--------------------~~~a~~f~~~~~~~~~~~~~v~~~  214 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG--------------------QKSLDSFATWVAETYPQITNVEVV  214 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC--------------------HHHHHHHHHHHHHhcCCCceEEEe
Confidence            36889999999999999998864  47788886622                    247788888888876654 35543


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      ..     ..+.+.++|+|+.|+.+
T Consensus       215 ~s-----~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        215 DS-----IEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             CC-----HHHHHcCCCEEEEccCC
Confidence            21     34667899999998853

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.68  E-value=0.2  Score=47.29  Aligned_cols=92  Identities=14%  Similarity=0.080  Sum_probs=54.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +.++|+|+|.|++|..+|+.|+..|.. +.+.|.+...   .                 ....+.|.+.  .+++  ...
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~~~~---~-----------------~~~~~~l~~~--g~~~--~~~   58 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGKPFS---E-----------------NPEAQELLEE--GIKV--ICG   58 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCCcc---c-----------------hhHHHHHHhc--CCEE--EeC
Confidence            456789999999999999999999975 7777743211   0                 0122334433  2232  221


Q ss_pred             CCCcchhhhcC-CCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVH-GFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~-~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..   ..+.+. .+|+||.+..-... ..+-+.|++.++|++
T Consensus        59 ~~---~~~~~~~~~d~vV~s~gi~~~-~~~~~~a~~~~i~v~   96 (447)
T PRK02472         59 SH---PLELLDEDFDLMVKNPGIPYT-NPMVEKALEKGIPII   96 (447)
T ss_pred             CC---CHHHhcCcCCEEEECCCCCCC-CHHHHHHHHCCCcEE
Confidence            11   112233 38999887632221 234566678888875

>PLN02427 UDP-apiose/xylose synthase

Probab=93.67  E-value=0.59  Score=43.16  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=27.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..+|+|.| +|-+|+.+++.|+..|--+++.+|.
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            3445789999 5899999999999985335777774

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=93.63  E-value=0.95  Score=41.02  Aligned_cols=31  Identities=16%  Similarity=0.062  Sum_probs=24.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.|+ |-+|+++++.|...|--+++.+|.
T Consensus         3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            5889996 899999999999864235777663

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=93.61  E-value=0.34  Score=44.86  Aligned_cols=92  Identities=11%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceE-EEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSV-CLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I-~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|+|+ |.+|.++++.|....--++ .+.|...     .            |+        .+.+..+..... ...
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-----~------------g~--------~l~~~~~~~~~~-~~~   56 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-----A------------GK--------PLSDVHPHLRGL-VDL   56 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-----c------------Cc--------chHHhCcccccc-cCc
Confidence            47899997 7899999999997633334 3444111     1            11        011111211100 011


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+.+.....+.++|+|+.|+.+........+ |.+.|+.+|
T Consensus        57 ~~~~~~~~~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VI   96 (343)
T PRK00436         57 VLEPLDPEILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVI   96 (343)
T ss_pred             eeecCCHHHhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEE
Confidence            1111122244679999999988655555444 455777765

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.60  E-value=0.25  Score=44.55  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEecC-
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNETK-  195 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~~-  195 (236)
                      +|.|||+|.+|..++++|+..|.. ++++|.+.-...-+ .        +.|...+....+-+++. .+++-+...+.. 
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~-v~v~dr~~~~~~~~-~--------~~g~~~~~s~~~~~~~~~~advVi~~vp~~~   71 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHE-VVGYDVNQEAVDVA-G--------KLGITARHSLEELVSKLEAPRTIWVMVPAGE   71 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH-H--------HCCCeecCCHHHHHHhCCCCCEEEEEecCch
Confidence            488999999999999999999974 77888653211111 0        11211111122222221 133334433332 


Q ss_pred             CCcch-hh---hcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEIS-EE---FVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~~-~~---~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ....- .+   .+..=.+||++. ..+.....+.+.+..+++.|+
T Consensus        72 ~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v  116 (299)
T PRK12490         72 VTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV  116 (299)
T ss_pred             HHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence            11110 11   233336888884 456666777777777777654

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.60  E-value=0.64  Score=40.37  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~   40 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN   40 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4568899995 7999999999999998 57777643

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=93.57  E-value=0.24  Score=47.25  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=42.6

Q ss_pred             eEEEEcCChhHHHHHH--HHH---HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAK--NII---LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak--~La---~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +|.|||+|++|...+.  .++   .....++.|+|.|.=....+                ...+...+....+..+++..
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~----------------~~~~~~~~~~~~~~~~I~~t   65 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETV----------------EILAKKIVEELGAPLKIEAT   65 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHH----------------HHHHHHHHHhcCCCeEEEEe
Confidence            5889999999998665  454   22224799998543111111                11122223333333444422


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..     -.+.++++|+||.+..
T Consensus        66 tD-----~~eal~~AD~Vi~ai~   83 (423)
T cd05297          66 TD-----RREALDGADFVINTIQ   83 (423)
T ss_pred             CC-----HHHHhcCCCEEEEeeE
Confidence            21     2356789999998875

linked to 3D####ucture

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.57  E-value=0.56  Score=44.91  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=27.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..+|+|.| .|-||+.+++.|...|.. +..+|.
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~  151 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDN  151 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeC
Confidence            3567899999 589999999999999975 556663

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=93.56  E-value=0.19  Score=45.32  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=58.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|.|||+|..|+.++.+|+..|. ++.++|.+.-....+ .... .    ....-.+.+.+.+  ..+++-+...+....
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l-~~~g-~----~~~~s~~~~~~~~--~~~dvIi~~vp~~~~   72 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAM-KEDR-T----TGVANLRELSQRL--SAPRVVWVMVPHGIV   72 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH-HHcC-C----cccCCHHHHHhhc--CCCCEEEEEcCchHH
Confidence            48999999999999999999996 477888765333333 1110 0    0000011111111  123444444333311


Q ss_pred             cc----hhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEE
Q psy9587         198 EI----SEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~~----~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I  235 (236)
                      ..    -...+..=++||++... +.....+.+.+...|+.|+
T Consensus        73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~v  115 (298)
T TIGR00872        73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL  115 (298)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEE
Confidence            11    11234444788888654 4555566667777777664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06046 alanine dehydrogenase; Validated

Probab=93.55  E-value=0.48  Score=43.47  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             cceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|+|+|+.|...+..|. ..++.++.++|.+.                    .+++.+++.+.+..+ +++.....
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~--------------------~~~~~~~~~~~~~~~-~~v~~~~~  187 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK--------------------SSAEKFVERMSSVVG-CDVTVAED  187 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH--------------------HHHHHHHHHHHhhcC-ceEEEeCC
Confidence            468999999999999999998 45778888877443                    244555555554332 33333221


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           -.+.+. +|+|+.|+.+
T Consensus       188 -----~~~~l~-aDiVv~aTps  203 (326)
T PRK06046        188 -----IEEACD-CDILVTTTPS  203 (326)
T ss_pred             -----HHHHhh-CCEEEEecCC
Confidence                 123444 8888888865

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.52  E-value=0.72  Score=41.92  Aligned_cols=34  Identities=9%  Similarity=-0.128  Sum_probs=26.9

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|.|+ |.+|+++++.|+..|.. ++++|.+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~   37 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLD   37 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCC
Confidence            3467899995 78999999999999964 6666644

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.51  E-value=0.18  Score=47.51  Aligned_cols=32  Identities=25%  Similarity=0.158  Sum_probs=28.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|+|.|++|..+|+.|...|. +++.+|.+
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~   35 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKS   35 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578999999999999999999997 58888843

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.49  E-value=0.12  Score=46.33  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..+|+|||+|..|+.+|..|+..|. .++++|.+.
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            3579999999999999999999998 599998654

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.49  E-value=0.68  Score=39.16  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=27.2

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|.| +|++|..+++.|+..|. ++.+++.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~   39 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC   39 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            446788898 68999999999999997 46666643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.47  E-value=0.12  Score=46.70  Aligned_cols=36  Identities=17%  Similarity=0.073  Sum_probs=31.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~  183 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARS  183 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4567899999999999999999999997 79888864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=93.47  E-value=0.12  Score=49.19  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +...+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r  214 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence            45678999999999999999999999999999764

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.46  E-value=0.7  Score=41.32  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=56.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+.+-|..+++.|...|..-+..+-.+.       ..+ .+..                  .+.  ..++.+.++
T Consensus         2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~-------~~~-~~~~------------------~g~--~~v~~g~l~   53 (256)
T TIGR00715         2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSE-------GKH-LYPI------------------HQA--LTVHTGALD   53 (256)
T ss_pred             eEEEEechHHHHHHHHHHHhCCCeEEEEEccCC-------ccc-cccc------------------cCC--ceEEECCCC
Confidence            588999988899999999998865433322111       111 1110                  001  123333444


Q ss_pred             cch-hhhcC--CCcEEEEcCCCHH--HHHHHHHHHHHcCCcEE
Q psy9587         198 EIS-EEFVH--GFDVVIATSCNPN--QLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~~~-~~~l~--~~DlVI~~~d~~~--~r~~In~~c~~~~ip~I  235 (236)
                      ... .+++.  +.|+|||++.+..  ....+.+.|.+.+||++
T Consensus        54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYV   96 (256)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence            333 24443  5899999999876  45678899999999986

This enzyme was found to be a monomer by gel filtration.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.40  E-value=0.42  Score=45.95  Aligned_cols=91  Identities=12%  Similarity=-0.038  Sum_probs=55.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +.++|+|+|+|-.|-.+++.|...|.. +++.|.+...  +.              .+    ...|.+   .  +.....
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~~--~~--------------~~----~~~l~~---~--~~~~~~   60 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNAV--EA--------------RE----VGALAD---A--ALLVET   60 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCcc--cc--------------hH----HHHHhh---c--CEEEeC
Confidence            346799999999999999999999998 6777754321  11              00    112333   1  111111


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                         ....+.+.++|+||.+..=+... .+-+.|++.+||++
T Consensus        61 ---~~~~~~~~~~d~vV~SpgI~~~~-p~~~~a~~~~i~i~   97 (468)
T PRK04690         61 ---EASAQRLAAFDVVVKSPGISPYR-PEALAAAARGTPFI   97 (468)
T ss_pred             ---CCChHHccCCCEEEECCCCCCCC-HHHHHHHHcCCcEE
Confidence               22335567899999876422221 23455677888875

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=93.39  E-value=0.25  Score=47.93  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=63.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh--HHHHHHHHHHhh-CCCceEEEEe-
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN--RAKSSEARAQNL-NPNVEVTSNE-  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~--Kaea~~~~L~~i-np~v~I~~~~-  193 (236)
                      .|.|||+|..|+.+|.+|+..|. +++++|.+.=....+ ... ..   .-|..  -+..+++.+..+ .|.+-+.... 
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l-~~~-~~---~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~   76 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEF-VKK-AK---EGNTRVKGYHTLEELVNSLKKPRKVILLIKA   76 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHh-hh---hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence            58999999999999999999998 599998754332222 110 00   00100  112233333332 2443333322 


Q ss_pred             cCCCc----chhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDE----ISEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~----~~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I  235 (236)
                      ....+    .-...++.=|+|||+... +.......+.+.++|+.|+
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl  123 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL  123 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            11111    112345666899999754 5555666678888888765

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.37  E-value=0.59  Score=41.28  Aligned_cols=31  Identities=16%  Similarity=0.120  Sum_probs=25.7

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            478888 58999999999999996 57777754

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.35  E-value=0.41  Score=45.08  Aligned_cols=33  Identities=15%  Similarity=-0.129  Sum_probs=26.4

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..+|+|||+ |.+|+.+++.|-...-.+|+.+|.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            357899999 999999999999653335777774

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.33  E-value=0.058  Score=44.36  Aligned_cols=101  Identities=15%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             eEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCc-CCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         118 VYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHED-IGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~d-IGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      +|+|+|+|.+|..+++.+.. .++.-+.+.|.  .+++.+   .+++..+. -|+.+.++-.     -+-...+......
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~---a~ll~~Ds~hg~~~~~v~~-----~~~~l~i~g~~i~   71 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETL---AHLLKYDSVHGRFPGEVEV-----DEDGLIVNGKKIK   71 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHH---HHHhcccCCCCCCCCcEEE-----eCCEEEECCEEEE
Confidence            58899999999999999874 45554555553  333333   22444322 2554332110     0111111111111


Q ss_pred             CC-cchhhh--c--CCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         196 VD-EISEEF--V--HGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       196 l~-~~~~~~--l--~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                      +. +.++..  +  .+.|+||+|+.-..++........
T Consensus        72 ~~~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~  109 (149)
T smart00846       72 VLAERDPANLPWKELGVDIVVECTGKFTTREKASAHLK  109 (149)
T ss_pred             EEecCChHHCcccccCCeEEEeccccccchHHHHHHHH
Confidence            11 111111  1  368999999988777766655544

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.31  E-value=0.49  Score=47.05  Aligned_cols=101  Identities=16%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHH-----hCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHH
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIIL-----SGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQ  181 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~-----~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~  181 (236)
                      .++..+|+++|+|+.|.-+|+.|+.     .|+      ++|.++|.+-+=..+-   .     +++...|...+..   
T Consensus       318 ~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r---~-----~~l~~~k~~fa~~---  386 (581)
T PLN03129        318 DLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR---K-----DSLQPFKKPFAHD---  386 (581)
T ss_pred             chhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC---C-----ccChHHHHHHHhh---
Confidence            3556789999999999999999988     477      6899999775432211   1     1133334443332   


Q ss_pred             hhCCCceEEEEecCCCcchhhhcCC--CcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587         182 NLNPNVEVTSNETKVDEISEEFVHG--FDVVIATSC--NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       182 ~inp~v~I~~~~~~l~~~~~~~l~~--~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~  236 (236)
                        .+.         . ..-.+.++.  .|++|.+..  +.=+...|..+|.....|+||
T Consensus       387 --~~~---------~-~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF  433 (581)
T PLN03129        387 --HEP---------G-ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF  433 (581)
T ss_pred             --ccc---------C-CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence              110         0 112345555  788887763  455677888888888888886

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.31  E-value=0.46  Score=46.34  Aligned_cols=35  Identities=11%  Similarity=0.040  Sum_probs=29.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHH--hCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIIL--SGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~--~GVg~I~LvD~D~  150 (236)
                      +.++|+|||+|..|.+.|..|+.  .|. +++|+|...
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence            34679999999999999999997  454 599999665

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=93.30  E-value=0.24  Score=47.93  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEec-CC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNET-KV  196 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~-~l  196 (236)
                      |.|||+|..|..+|.+|+..|. +++++|.+.-....+ ...+.-. .  +..-+...++....+ .|.+-+...+. ..
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l-~~~~~~g-~--~~~~~~s~~e~v~~l~~~dvIil~v~~~~~   76 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEF-LAEHAKG-K--KIVGAYSIEEFVQSLERPRKIMLMVKAGAP   76 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHH-HhhccCC-C--CceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence            6899999999999999999998 588888765433333 1110000 0  000011122222222 24443443332 11


Q ss_pred             Ccc----hhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEI----SEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~----~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+.    -...+..=|+|||+.. .+.......+.+.+.++.||
T Consensus        77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv  120 (467)
T TIGR00873        77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV  120 (467)
T ss_pred             HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE
Confidence            111    1234455689999974 44554555666778887765

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.29  E-value=0.38  Score=44.65  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEE-EeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVC-LLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~-LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      +|+|+|+ |.+|.++++.|...-.-++. +++.+.-                .|+.        +.+.+|.+.... ...
T Consensus         2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s----------------agk~--------~~~~~~~l~~~~-~~~   56 (346)
T TIGR01850         2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES----------------AGKP--------VSEVHPHLRGLV-DLN   56 (346)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh----------------cCCC--------hHHhCccccccC-Cce
Confidence            5899998 89999999999965233344 5453321                1111        111222211100 111


Q ss_pred             CCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.+.+ .++.+++|+||.|+.+........++ .+.|+.+|
T Consensus        57 ~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VI   96 (346)
T TIGR01850        57 LEPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVI   96 (346)
T ss_pred             eecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEE
Confidence            11111 23446899999999887776666655 44676665

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.29  E-value=0.14  Score=45.34  Aligned_cols=33  Identities=24%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      |+|||+|-+|+.+|..|++.|. +++|+|.+.+-
T Consensus         2 vvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~   34 (358)
T PF01266_consen    2 VVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG   34 (358)
T ss_dssp             EEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence            7899999999999999999999 69999988553

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.27  E-value=0.6  Score=41.96  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|+|.| .|-+|+++++.|...|.. ++.++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~   31 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLV   31 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCe-EEEEE
Confidence            578899 588999999999999864 66654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.22  E-value=0.53  Score=39.89  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|+|+ |++|.++++.|+..|.. +++++.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4568899995 78999999999999987 8887744

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.20  E-value=0.24  Score=47.24  Aligned_cols=88  Identities=18%  Similarity=0.086  Sum_probs=54.0

Q ss_pred             ccceEEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|+|+|+|+.|.. +|+.|...|.. +++.|....                    .  .. +.|.+.  .+.+.  .
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~~~--------------------~--~~-~~l~~~--gi~~~--~   57 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLKES--------------------A--VT-QRLLEL--GAIIF--I   57 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCCCC--------------------h--HH-HHHHHC--CCEEe--C
Confidence            3457899999999999 79999999987 667663221                    0  01 124433  33332  1


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .    ...+.+.++|+||.+..=+.... .-+.++++++|++
T Consensus        58 ~----~~~~~~~~~d~vv~spgi~~~~~-~~~~a~~~~i~i~   94 (461)
T PRK00421         58 G----HDAENIKDADVVVYSSAIPDDNP-ELVAARELGIPVV   94 (461)
T ss_pred             C----CCHHHCCCCCEEEECCCCCCCCH-HHHHHHHCCCcEE
Confidence            1    12345568999998764322222 2355677888875

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.20  E-value=0.3  Score=43.83  Aligned_cols=35  Identities=14%  Similarity=-0.082  Sum_probs=29.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|.|+|++|..++..+...|..++..+|.+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~  197 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS  197 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35689999999999999999999999877777643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.16  E-value=0.76  Score=45.97  Aligned_cols=35  Identities=17%  Similarity=0.084  Sum_probs=30.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.++|+|||.|..|-..|..|++.|.. ++++|...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence            467899999999999999999999985 88988543

>PRK13529 malate dehydrogenase; Provisional

Probab=93.14  E-value=0.48  Score=46.91  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=66.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHH----hCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIIL----SGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN  182 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~----~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~  182 (236)
                      .++..+|+++|+|+.|.-+|+.|+.    .|+      .+|.++|.+-+=.++-         .|+...|..-+..    
T Consensus       292 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r---------~~l~~~k~~fa~~----  358 (563)
T PRK13529        292 PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDM---------PDLLDFQKPYARK----  358 (563)
T ss_pred             ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC---------CcchHHHHHHhhh----
Confidence            3456789999999999999999987    599      5899999775432211         1233334433322    


Q ss_pred             hCCCceEEEEecCCCcchhhhcCCC--cEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587         183 LNPNVEVTSNETKVDEISEEFVHGF--DVVIATSC--NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       183 inp~v~I~~~~~~l~~~~~~~l~~~--DlVI~~~d--~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++....... . ....-.+.++..  |++|.+..  +.=+...|..++.....|+||
T Consensus       359 ~~~~~~~~~~-~-~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF  414 (563)
T PRK13529        359 REELADWDTE-G-DVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIF  414 (563)
T ss_pred             cccccccccc-c-CCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence            1211001000 0 001114455655  88887764  455677888888888888886

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=93.11  E-value=0.41  Score=44.57  Aligned_cols=91  Identities=12%  Similarity=-0.051  Sum_probs=52.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-------ceEEEeeCCcc-cccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-------KSVCLLDSGVV-TKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-------g~I~LvD~D~V-e~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I  189 (236)
                      +|.|+|+|.-|+.+|..|+..|.       .+++++..+.. +.++                    +.+.+.+-..+.+.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~--------------------~~~~in~~~~n~~y   60 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRN--------------------LTEIINTTHENVKY   60 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHH--------------------HHHHHHhcCCCccc
Confidence            37899999999999999998883       46777754210 0001                    12222211111110


Q ss_pred             E---EEecCC--CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         190 T---SNETKV--DEISEEFVHGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       190 ~---~~~~~l--~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                      -   ..+..+  +....+.++++|+||.++.+...+..+.++..
T Consensus        61 lpgi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~  104 (342)
T TIGR03376        61 LPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKG  104 (342)
T ss_pred             cCCCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHh
Confidence            0   001111  11224567889999999988887777777653

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.09  E-value=0.15  Score=47.08  Aligned_cols=36  Identities=11%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|+ ++..+|..
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  182 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT  182 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4678999999999999999999999998 47777753

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.07  E-value=0.42  Score=44.34  Aligned_cols=35  Identities=11%  Similarity=0.245  Sum_probs=25.7

Q ss_pred             hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         201 EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .+.+.++|+||+|+.+...... .+.|.+.|+++|+
T Consensus        73 ~el~~~vDVVIdaT~~~~~~e~-a~~~~~aGk~VI~  107 (341)
T PRK04207         73 EDLLEKADIVVDATPGGVGAKN-KELYEKAGVKAIF  107 (341)
T ss_pred             hHhhccCCEEEECCCchhhHHH-HHHHHHCCCEEEE
Confidence            3455789999999977655544 4577778898874

>KOG0024|consensus

Probab=93.06  E-value=0.38  Score=44.75  Aligned_cols=36  Identities=14%  Similarity=-0.089  Sum_probs=31.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|+|.|+|.+|-.....+-.+|..+|.++|-+.
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~  204 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA  204 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence            457899999999999999999999999999988543

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.06  E-value=0.88  Score=39.05  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=27.6

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r   41 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAAR   41 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            35578899996 79999999999999985 666553

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.06  E-value=0.65  Score=44.30  Aligned_cols=21  Identities=14%  Similarity=0.061  Sum_probs=18.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHH
Q psy9587         117 YVYSTGPLTRVGAEIAKNIIL  137 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~  137 (236)
                      .+|.|+|+|.+|..+++.|..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~   24 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEE   24 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHH
Confidence            578999999999999988854

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=93.05  E-value=0.59  Score=42.98  Aligned_cols=75  Identities=16%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+++|||+|..|...++.|.. ..+.++.++|                    ....|++.+++++++..  +++....
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~--------------------r~~~~~~~~~~~~~~~g--~~v~~~~  184 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC--------------------RTPSTREKFALRASDYE--VPVRAAT  184 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC--------------------CCHHHHHHHHHHHHhhC--CcEEEeC
Confidence            34688999999999998877754 2344555544                    23446777777776542  2333321


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           ...+.++++|+|+.|+.+
T Consensus       185 -----~~~eav~~aDiVitaT~s  202 (325)
T TIGR02371       185 -----DPREAVEGCDILVTTTPS  202 (325)
T ss_pred             -----CHHHHhccCCEEEEecCC
Confidence                 234667899999999854

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=93.04  E-value=0.2  Score=46.49  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=32.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTK  153 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~  153 (236)
                      ..-|+|||+|-+|+.+|..|++. |..+++|+|.+.+-.
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~   68 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG   68 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence            35689999999999999999985 877899999876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.98  E-value=0.28  Score=47.41  Aligned_cols=88  Identities=7%  Similarity=-0.042  Sum_probs=54.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ...+|+|+|+|..|-.+++.|...|. ++++.|...       .             +   .. .+++.  .+.+  ...
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------~-------------~---~~-~l~~~--g~~~--~~~   61 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------D-------------A---LR-PHAER--GVAT--VST   61 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------H-------------H---HH-HHHhC--CCEE--EcC
Confidence            34679999999999999999999996 577777321       0             0   11 13332  2222  221


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .   ...+.++++|+||.+..-+... -+-..+++.+||++
T Consensus        62 ~---~~~~~l~~~D~VV~SpGi~~~~-p~~~~a~~~gi~v~   98 (488)
T PRK03369         62 S---DAVQQIADYALVVTSPGFRPTA-PVLAAAAAAGVPIW   98 (488)
T ss_pred             c---chHhHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEe
Confidence            1   1234567899999887533222 34556678888875

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.98  E-value=0.5  Score=42.22  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            37899999999999999999996 588888664

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.92  E-value=0.85  Score=40.68  Aligned_cols=34  Identities=12%  Similarity=0.068  Sum_probs=27.2

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            34567889995 8999999999999997 4666663

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=92.92  E-value=0.48  Score=36.49  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             cCChhHHHHHHHHHHh----CCceEEEeeCC
Q psy9587         123 PLTRVGAEIAKNIILS----GVKSVCLLDSG  149 (236)
Q Consensus       123 G~GgvGsevak~La~~----GVg~I~LvD~D  149 (236)
                      |+|.+|..+++.|...    ++.-..|.|.+
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~   31 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS   31 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC
Confidence            8999999999999976    45656666755

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK06194 hypothetical protein; Provisional

Probab=92.85  E-value=0.98  Score=39.44  Aligned_cols=33  Identities=21%  Similarity=0.094  Sum_probs=27.1

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|.| .|++|.++++.|+..|.. ++++|.
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r   38 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMK-LVLADV   38 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeC
Confidence            346788888 579999999999999974 777774

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=92.81  E-value=0.16  Score=48.06  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|||+|.||+.+|+.|...|+. +..+|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            46788999999999999999999999996 556675

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.78  E-value=0.18  Score=45.07  Aligned_cols=33  Identities=27%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|+|||+|..|+.+|..|+..|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4579999999999999999999997 48888865

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.76  E-value=0.17  Score=47.09  Aligned_cols=38  Identities=11%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHH-hCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIIL-SGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~-~GVg~I~LvD~D~  150 (236)
                      .++.++|+|+|+ |.+|+++++.|+. .|+.++++++.+.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~  191 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ  191 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence            356789999998 8999999999985 5899999988653

>PRK08655 prephenate dehydrogenase; Provisional

Probab=92.74  E-value=0.25  Score=47.28  Aligned_cols=31  Identities=16%  Similarity=0.047  Sum_probs=26.4

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+||| +|.+|+.+++.|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            578997 89999999999999996 57887754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=92.72  E-value=0.76  Score=45.06  Aligned_cols=95  Identities=14%  Similarity=0.095  Sum_probs=55.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh--CCCceEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL--NPNVEVTS  191 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i--np~v~I~~  191 (236)
                      +.++|+|||+|..|.++|..|+ ..|+. ++|+|....----+  |. -..++.   ++.+.+.+.+.+.  ++.+++..
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgGLv--R~-GVaPdh---~~~k~v~~~f~~~~~~~~v~f~g  110 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYGLI--RY-GVAPDH---IHVKNTYKTFDPVFLSPNYRFFG  110 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCccEE--EE-eCCCCC---ccHHHHHHHHHHHHhhCCeEEEe
Confidence            4468999999999999999765 56664 99988665443333  32 222222   3333444444332  34444432


Q ss_pred             EecCCCc-ch-hhhcCCCcEEEEcCCCH
Q psy9587         192 NETKVDE-IS-EEFVHGFDVVIATSCNP  217 (236)
Q Consensus       192 ~~~~l~~-~~-~~~l~~~DlVI~~~d~~  217 (236)
                       +..+.. .+ .++...||.||.+++..
T Consensus       111 -nv~VG~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        111 -NVHVGVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             -eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence             222221 12 44567899999998753

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.72  E-value=0.58  Score=42.71  Aligned_cols=32  Identities=22%  Similarity=0.125  Sum_probs=28.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|.|+|+ |.+|+.++..|+..|+. +++++|.+
T Consensus         2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            5889998 99999999999999985 79999974

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.71  E-value=0.95  Score=38.68  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~   40 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLN   40 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCC
Confidence            34578899996 89999999999999985 6676643

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.68  E-value=0.73  Score=41.65  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=59.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC-
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV-  196 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l-  196 (236)
                      +|.+||+|-.|..++.+|+..|. +++++|.+. ....+      .   +.|...+....+.+  ...++-+...+..- 
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~-~~~~~------~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~   68 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP-VADEL------L---SLGAVSVETARQVT--EASDIIFIMVPDTPQ   68 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH-hHHHH------H---HcCCeecCCHHHHH--hcCCEEEEeCCChHH
Confidence            48899999999999999999996 577887653 11111      1   12222222222211  12233333333220 


Q ss_pred             -C-----cch-hhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 -D-----EIS-EEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 -~-----~~~-~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                       .     +.. ...+..-.+||+|+ .++.....+.+.+..+|+.|+
T Consensus        69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~v  115 (292)
T PRK15059         69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYL  115 (292)
T ss_pred             HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence             0     000 11122235777775 567788889999999888764

>PLN02240 UDP-glucose 4-epimerase

Probab=92.68  E-value=2  Score=38.70  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=26.5

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            4567899984 8999999999999986 577776

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.68  E-value=0.15  Score=43.21  Aligned_cols=41  Identities=20%  Similarity=0.112  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQ  160 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq  160 (236)
                      +|.|+|+|=+|..+|-.|+..|.. +.-+|.|.-....| ++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l-~~g   42 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEAL-NNG   42 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHH-HTT
T ss_pred             EEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHH-hhc
Confidence            588999999999999999999965 77778887666666 443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.66  E-value=0.7  Score=43.92  Aligned_cols=39  Identities=15%  Similarity=0.024  Sum_probs=31.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      .+|+|||+|-+|..+|..|+..|. +++.+|.|.-..+.+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l   42 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTI   42 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            568999999999999999999995 488888765444445

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.65  E-value=0.19  Score=44.81  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.++..|+..|. .++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            468999999999999999999998 68888854

>PRK06523 short chain dehydrogenase; Provisional

Probab=92.62  E-value=0.77  Score=39.44  Aligned_cols=76  Identities=9%  Similarity=0.010  Sum_probs=49.2

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh-HHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++.++|+|.|+ |++|.++++.|+..|.. +.+++.+.-+  .+ ...+.+-..|+... -++.+.+.+.+....+.+-.
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~~--~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   82 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRPD--DL-PEGVEFVAADLTTAEGCAAVARAVLERLGGVDILV   82 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChhh--hc-CCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            45678899994 79999999999999985 7777765422  23 22233345567654 34555556666555555554


Q ss_pred             Ee
Q psy9587         192 NE  193 (236)
Q Consensus       192 ~~  193 (236)
                      +.
T Consensus        83 ~~   84 (260)
T PRK06523         83 HV   84 (260)
T ss_pred             EC
Confidence            43

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.62  E-value=0.88  Score=43.72  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=29.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|||+|..|...|..|++.|.. ++++|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            457899999999999999999999986 8888754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.61  E-value=0.88  Score=41.38  Aligned_cols=61  Identities=10%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+.++|.|+ ||+|.++|+.|+..|.. +.+++.+.                    .+.+.+++.+.+.++..++..+..
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~--------------------~~l~~~~~~l~~~~~~~~~~~~~~  111 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNP--------------------DKLKDVSDSIQSKYSKTQIKTVVV  111 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCH--------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence            467889995 69999999999999984 77776321                    234556666766666555555544


Q ss_pred             CCC
Q psy9587         195 KVD  197 (236)
Q Consensus       195 ~l~  197 (236)
                      ++.
T Consensus       112 Dl~  114 (320)
T PLN02780        112 DFS  114 (320)
T ss_pred             ECC
Confidence            443

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=92.57  E-value=1.3  Score=38.74  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=24.2

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~  148 (236)
                      +|+|.| +|.+|.++++.|+..|- -+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            367888 58999999999999874 35766663

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=92.57  E-value=0.17  Score=47.08  Aligned_cols=34  Identities=21%  Similarity=0.034  Sum_probs=29.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++.++|+|||+|.+|..+|++|..+|+. +.+.|
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~   46 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGV   46 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEE
Confidence            46778999999999999999999999995 55555

>PLN02928 oxidoreductase family protein

Probab=92.56  E-value=0.18  Score=46.81  Aligned_cols=35  Identities=17%  Similarity=0.034  Sum_probs=31.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|||+|.+|..+|+.|...|+ ++..+|.
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            4778899999999999999999999998 5777775

>PRK12862 malic enzyme; Reviewed

Probab=92.55  E-value=0.46  Score=48.82  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++..+|++.|+|+.|..+++.|...|+.  +|.++|..-+=..+-   .     +++...|...+.+    .++      
T Consensus       191 ~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r---~-----~~l~~~~~~~a~~----~~~------  252 (763)
T PRK12862        191 IEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGR---T-----ELMDPWKARYAQK----TDA------  252 (763)
T ss_pred             hhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCC---C-----ccccHHHHHHhhh----ccc------
Confidence            4567899999999999999999999995  899999664322211   0     1133344443332    121      


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~  236 (236)
                        .    .-.+.+++.|++|.+.. +.-+...+..+|   .-|+||
T Consensus       253 --~----~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~---~~piif  289 (763)
T PRK12862        253 --R----TLAEVIEGADVFLGLSAAGVLKPEMVKKMA---PRPLIF  289 (763)
T ss_pred             --C----CHHHHHcCCCEEEEcCCCCCCCHHHHHHhc---cCCEEE
Confidence              1    12455677888887654 334556666666   456664

>PLN02214 cinnamoyl-CoA reductase

Probab=92.54  E-value=2.2  Score=38.85  Aligned_cols=99  Identities=10%  Similarity=0.004  Sum_probs=56.3

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+|.|+ |.+|+.+++.|+..|.. ++.++.+.   ++.               +.. ....+....  -+++...
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~---~~~---------------~~~-~~~~~~~~~--~~~~~~~   66 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNP---DDP---------------KNT-HLRELEGGK--ERLILCK   66 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCc---hhh---------------hHH-HHHHhhCCC--CcEEEEe
Confidence            4567899996 89999999999999864 55444221   111               000 011111111  1344555


Q ss_pred             cCCCcch--hhhcCCCcEEEEcCCC------------HHHHHHHHHHHHHcCCc-EE
Q psy9587         194 TKVDEIS--EEFVHGFDVVIATSCN------------PNQLIKIDDFCRSKSKI-SL  235 (236)
Q Consensus       194 ~~l~~~~--~~~l~~~DlVI~~~d~------------~~~r~~In~~c~~~~ip-~I  235 (236)
                      .++.+..  .+.++++|+||.+...            ...-..+-+.|++.++. +|
T Consensus        67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V  123 (342)
T PLN02214         67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVV  123 (342)
T ss_pred             cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            5555432  4456788999877531            22344566678777763 44

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=92.52  E-value=0.18  Score=46.05  Aligned_cols=33  Identities=15%  Similarity=-0.019  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      -|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            37899999999999999999997 5999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.52  E-value=0.71  Score=43.47  Aligned_cols=29  Identities=21%  Similarity=0.229  Sum_probs=25.8

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      |+|+|+|+.|-.+|+.|...|.. ++..|.
T Consensus         2 ~~~iG~G~~G~a~a~~l~~~G~~-V~~sD~   30 (433)
T TIGR01087         2 ILILGLGKTGRAVARFLHKKGAE-VTVTDL   30 (433)
T ss_pred             EEEEEeCHhHHHHHHHHHHCCCE-EEEEeC
Confidence            68999999999999999999984 777774

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.51  E-value=0.86  Score=39.07  Aligned_cols=33  Identities=21%  Similarity=0.092  Sum_probs=26.9

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r   38 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAK-VVVGAR   38 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            4567888985 69999999999999984 766663

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=92.51  E-value=1.1  Score=42.74  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=30.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|||.|..|.+.|..|++.|.. ++|+|..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~  165 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL  165 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            456899999999999999999999974 9999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=92.50  E-value=0.63  Score=41.97  Aligned_cols=106  Identities=17%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC-
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV-  196 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l-  196 (236)
                      +|.|||+|..|+.++.+|+..|. .++++|.+.-....+ ...        |...+....+.+.  ..++-+...+... 
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~-~~~--------g~~~~~s~~~~~~--~aDvVi~~vp~~~~   70 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDAL-VDK--------GATPAASPAQAAA--GAEFVITMLPNGDL   70 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHH-HHc--------CCcccCCHHHHHh--cCCEEEEecCCHHH
Confidence            58999999999999999999996 588888764333333 111        1111111111111  1123333333221 


Q ss_pred             -Cc----c-h-hhhcCCCcEEEEc-CCCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 -DE----I-S-EEFVHGFDVVIAT-SCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 -~~----~-~-~~~l~~~DlVI~~-~d~~~~r~~In~~c~~~~ip~I  235 (236)
                       ..    . . ...++.-.+||++ +.++.....+.+.+.+.++.|+
T Consensus        71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l  117 (296)
T PRK15461         71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM  117 (296)
T ss_pred             HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence             00    0 0 1112333466666 4567777788888888887654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=92.48  E-value=0.18  Score=45.91  Aligned_cols=34  Identities=21%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ..|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            458999999999999999999996 5999998754

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=92.47  E-value=1.2  Score=42.63  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=27.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..+|+|.| .|-||+++++.|...|.. ++.+|..
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~-V~~ldr~  153 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDE-VIVIDNF  153 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            3456799999 688999999999999864 7777743

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=92.44  E-value=0.24  Score=43.92  Aligned_cols=105  Identities=10%  Similarity=0.162  Sum_probs=54.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe-c
Q psy9587         118 VYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE-T  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~-~  194 (236)
                      +|.|||||++|..+++.+-.-  ++.-+.+.|.+.=...++ -+.       ++..+...+-+.+  --+++-|++-. +
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~~~-------~~~~~~s~ide~~--~~~DlvVEaAS~~   71 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-EAS-------VGRRCVSDIDELI--AEVDLVVEAASPE   71 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-Hhh-------cCCCccccHHHHh--hccceeeeeCCHH
Confidence            588999999999999876533  355566667665444444 222       2222221111111  12223333211 1


Q ss_pred             CCCcchhhhc-CCCcEEEEcCCC---HHHHHHHHHHHHHcCC
Q psy9587         195 KVDEISEEFV-HGFDVVIATSCN---PNQLIKIDDFCRSKSK  232 (236)
Q Consensus       195 ~l~~~~~~~l-~~~DlVI~~~d~---~~~r~~In~~c~~~~i  232 (236)
                      -+.+..+..+ .++|++|.++.-   ...+..+.+.|+..+-
T Consensus        72 Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~  113 (255)
T COG1712          72 AVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGA  113 (255)
T ss_pred             HHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence            1222233444 458999887754   4455566666665543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=92.39  E-value=0.73  Score=42.15  Aligned_cols=74  Identities=18%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+++|+|+|..|-.-++.|+. .++.+|.++|.+                    ..+++.+++++++ . .+.+.....
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~--------------------~~~~~~~~~~~~~-~-~~~v~~~~~  185 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS--------------------PERAEAFAARLRD-L-GVPVVAVDS  185 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS--------------------HHHHHHHHHHHHC-C-CTCEEEESS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC--------------------hhHHHHHHHhhcc-c-cccceeccc
Confidence            3588999999999999988764 668888887722                    2468888999998 4 666665432


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           ..+.++++|+|+.|+.+
T Consensus       186 -----~~~av~~aDii~taT~s  202 (313)
T PF02423_consen  186 -----AEEAVRGADIIVTATPS  202 (313)
T ss_dssp             -----HHHHHTTSSEEEE----
T ss_pred             -----hhhhcccCCEEEEccCC
Confidence                 34678899999999864

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=92.38  E-value=0.22  Score=46.04  Aligned_cols=36  Identities=22%  Similarity=0.101  Sum_probs=30.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++..+|+|||+|.+|..+|+.|...|.. +..+|..
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~  178 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAY  178 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCC
Confidence            46778899999999999999999999974 7777743

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=92.33  E-value=0.32  Score=47.48  Aligned_cols=113  Identities=14%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh---HHHHHHHHHHhh-CCCceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN---RAKSSEARAQNL-NPNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~---Kaea~~~~L~~i-np~v~I~~~  192 (236)
                      ..|.+||+|..|+.+|.||+..|.. ++++|.+.=....+ ...    ...-|..   -+...++....+ .|.+-+...
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l-~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v   80 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDET-VER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV   80 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHH-HHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence            4689999999999999999999985 88888653222222 100    0000110   112222333222 244444433


Q ss_pred             ecCC--Cc---chhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKV--DE---ISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l--~~---~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I  235 (236)
                      ...-  .+   .-...+..=|+|||+.. ++.....+.+.+.+.|+.||
T Consensus        81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            2211  11   01233455689999975 47777788889999998775

>PRK10537 voltage-gated potassium channel; Provisional

Probab=92.28  E-value=0.8  Score=43.45  Aligned_cols=85  Identities=6%  Similarity=-0.066  Sum_probs=55.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ..+|+|+|.|.+|.++++.|...|. .++++|.|.++. .. ..                          .  +....++
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~-~~-~~--------------------------g--~~vI~GD  288 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH-RL-PD--------------------------D--ADLIPGD  288 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh-hc-cC--------------------------C--CcEEEeC
Confidence            4578999999999999999998887 478888763211 11 00                          1  1122333


Q ss_pred             CCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         196 VDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       196 l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      .++..   ..-+++++.||.++++......+-..+++.+
T Consensus       289 ~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~  327 (393)
T PRK10537        289 SSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS  327 (393)
T ss_pred             CCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence            33221   2345678888888888777777777777765

>PRK15076 alpha-galactosidase; Provisional

Probab=92.28  E-value=0.68  Score=44.39  Aligned_cols=93  Identities=14%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             eEEEEcCChhHHHHHH--HHH-HhCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHH-HHHHHHhhCCCceEEE
Q psy9587         118 VYSTGPLTRVGAEIAK--NII-LSGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS-SEARAQNLNPNVEVTS  191 (236)
Q Consensus       118 ~VlIVG~GgvGsevak--~La-~~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea-~~~~L~~inp~v~I~~  191 (236)
                      +|.|||+|++|...+.  .++ ..+.  .+++|+|-|.   +-+ .             ++.+ +...+....+.++|+.
T Consensus         3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~---er~-~-------------~~~~l~~~~~~~~~~~~~i~~   65 (431)
T PRK15076          3 KITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP---ERL-E-------------ESEIVARKLAESLGASAKITA   65 (431)
T ss_pred             EEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH---HHH-H-------------HHHHHHHHHHHhcCCCeEEEE
Confidence            6899999999866655  554 2233  3899999543   111 0             0222 2333334444455553


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCC--HHHHHHHH-HHHHHcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCN--PNQLIKID-DFCRSKSK  232 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~--~~~r~~In-~~c~~~~i  232 (236)
                      ...     -.+.++++|+||.+...  ...+...+ ++..++|+
T Consensus        66 ttD-----~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~  104 (431)
T PRK15076         66 TTD-----RREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGL  104 (431)
T ss_pred             ECC-----HHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCC
Confidence            222     13557899999988754  33333233 34444443

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=92.28  E-value=0.2  Score=44.36  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=26.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~   34 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGID-VTIIERRP   34 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence            589999999999999999999988 88888654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06949 short chain dehydrogenase; Provisional

Probab=92.27  E-value=1.2  Score=38.00  Aligned_cols=34  Identities=24%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|..+++.|+..|.. +++++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557888898 589999999999999984 666654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.25  E-value=0.55  Score=41.90  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|.|||+|.+|..++.+|+..|.. +.++|.+.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYS-LVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCH
Confidence            689999999999999999999964 77888654

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.25  E-value=0.34  Score=45.48  Aligned_cols=92  Identities=13%  Similarity=0.019  Sum_probs=55.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh--h---
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN--L---  183 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~--i---  183 (236)
                      +..+|.|+|+|+=|+.+|..|+..|.      .+++++..|..    + +          ++.    ..+.+.+  .   
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~----~-~----------~~~----~~~~in~~~~N~~   70 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI----V-E----------GEK----LSDIINTKHENVK   70 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc----c-c----------chH----HHHHHHhcCCCcc
Confidence            34679999999999999999999874      46777654431    0 0          000    1111211  1   


Q ss_pred             -CCCceEEEEecCC--CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         184 -NPNVEVTSNETKV--DEISEEFVHGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       184 -np~v~I~~~~~~l--~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                       -|.+++   +..+  +....+.++++|+||.++.+...+..+.++..
T Consensus        71 ylp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~  115 (365)
T PTZ00345         71 YLPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKE  115 (365)
T ss_pred             cCCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhcc
Confidence             112211   1111  11223567889999999988888877777653

>PRK06125 short chain dehydrogenase; Provisional

Probab=92.24  E-value=1.7  Score=37.44  Aligned_cols=34  Identities=15%  Similarity=0.086  Sum_probs=28.5

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~   40 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD   40 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            4578899997 6999999999999998 68887743

>PRK08339 short chain dehydrogenase; Provisional

Probab=92.22  E-value=1.3  Score=38.69  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=28.2

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++++|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~   41 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRN   41 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence            35578899996 68999999999999974 7777643

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=92.19  E-value=1.2  Score=47.08  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccccc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKE  154 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~s  154 (236)
                      +.++|+|||+|..|-++|..|++.|.. ++++|...++.-
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl  420 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLL  420 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccccc
Confidence            567899999999999999999999977 999998655433

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=92.14  E-value=0.22  Score=46.27  Aligned_cols=33  Identities=15%  Similarity=0.057  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            368999999999999999999996 599999875

>PRK09414 glutamate dehydrogenase; Provisional

Probab=92.14  E-value=1.3  Score=42.79  Aligned_cols=35  Identities=17%  Similarity=0.012  Sum_probs=31.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++.++|+|.|.|.||..+|+.|...|..-+.+.|
T Consensus       229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            46778999999999999999999999988777767

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=92.13  E-value=0.21  Score=47.16  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|||+|.+|..+++.|...|+. +..+|+
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            46778999999999999999999999996 666775

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=92.12  E-value=0.23  Score=46.31  Aligned_cols=35  Identities=9%  Similarity=0.018  Sum_probs=31.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+..++|+|||+|-+|..++++|...|+++|++..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n  205 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS  205 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence            46778999999999999999999999999999964

>PRK14030 glutamate dehydrogenase; Provisional

Probab=92.10  E-value=1.1  Score=43.36  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=32.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|=|.|-||+.+|+.|...|..-+.+.|.+
T Consensus       225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~  261 (445)
T PRK14030        225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD  261 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4678899999999999999999999999988876633

>PRK00811 spermidine synthase; Provisional

Probab=92.09  E-value=0.64  Score=41.88  Aligned_cols=35  Identities=9%  Similarity=-0.013  Sum_probs=25.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+++|+|+ |+.....|...++.+++.+|-|.
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            456899999975 55555555555899999999665

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.08  E-value=1.5  Score=41.05  Aligned_cols=33  Identities=12%  Similarity=0.119  Sum_probs=25.9

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|+|+ |.+|..+++.|...|.. +++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence            3457888984 89999999999999864 666553

>PRK09186 flagellin modification protein A; Provisional

Probab=92.08  E-value=0.96  Score=38.60  Aligned_cols=32  Identities=22%  Similarity=0.143  Sum_probs=26.2

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~   35 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGI-VIAAD   35 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            4578899995 69999999999999975 55554

>PRK12939 short chain dehydrogenase; Provisional

Probab=92.03  E-value=1.7  Score=36.76  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=25.9

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~   38 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGAT-VAFND   38 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence            4567888985 89999999999999975 55555

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.03  E-value=0.86  Score=41.83  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=28.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            468999999999999999888999987877764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=92.03  E-value=1.1  Score=43.00  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=61.5

Q ss_pred             eEEEEcCChh-HHHHHHHHHH----hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH-HhhCCCceEEE
Q psy9587         118 VYSTGPLTRV-GAEIAKNIIL----SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA-QNLNPNVEVTS  191 (236)
Q Consensus       118 ~VlIVG~Ggv-Gsevak~La~----~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L-~~inp~v~I~~  191 (236)
                      +|.|||+|++ +-.++..|+.    .++++|+|+|-|.   ..| .+             +..+++++ .+..+.++|+.
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl-~~-------------v~~l~~~~~~~~g~~~~v~~   64 (437)
T cd05298           2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQ-EK-------------VAEAVKILFKENYPEIKFVY   64 (437)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHH-HH-------------HHHHHHHHHHhhCCCeEEEE
Confidence            5789999986 2355666653    4568999999554   223 11             23344444 45555666665


Q ss_pred             EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i  232 (236)
                      ...     -.+-++++|+||.+.  +..+.+..=.+++.++|+
T Consensus        65 Ttd-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi  102 (437)
T cd05298          65 TTD-----PEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV  102 (437)
T ss_pred             ECC-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc
Confidence            433     346789999999885  667888877788888886

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.01  E-value=1.8  Score=39.47  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=27.4

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|.| +|=+|+++++.|...|. +++.+|..
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            446789999 58899999999999986 57777743

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.99  E-value=1  Score=42.56  Aligned_cols=88  Identities=13%  Similarity=0.064  Sum_probs=53.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .++|+|+|.|+.|-..++.|...|. +++..|.+.-    .              ..    ...|.+   .+.+.  ...
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~----~--------------~~----~~~l~~---g~~~~--~~~   57 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRIT----P--------------PG----LDKLPE---NVERH--TGS   57 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCC----c--------------hh----HHHHhc---CCEEE--eCC
Confidence            3578999999999999999999997 5888884320    1              00    112221   33332  221


Q ss_pred             CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .   ....++++|+||....-... ...-..|++.|+|++
T Consensus        58 ~---~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g~~v~   93 (438)
T PRK03806         58 L---NDEWLLAADLIVASPGIALA-HPSLSAAADAGIEIV   93 (438)
T ss_pred             C---CHHHhcCCCEEEECCCCCCC-CHHHHHHHHCCCeEE
Confidence            1   22345678998877643322 233445678888864

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=91.98  E-value=1.4  Score=39.23  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      ..|+|+|-.+=|-.++..|...|..-+.=+-.+                  .|.             ...-.+..+.+.+
T Consensus         3 ~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~------------------~g~-------------~~~~~~~v~~G~l   51 (248)
T PRK08057          3 PRILLLGGTSEARALARALAAAGVDIVLSLAGR------------------TGG-------------PADLPGPVRVGGF   51 (248)
T ss_pred             ceEEEEechHHHHHHHHHHHhCCCeEEEEEccC------------------CCC-------------cccCCceEEECCC
Confidence            358889988999999999998887533221111                  111             0011334555666


Q ss_pred             -Ccch-hhhc--CCCcEEEEcCCCHHH--HHHHHHHHHHcCCcEE
Q psy9587         197 -DEIS-EEFV--HGFDVVIATSCNPNQ--LIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 -~~~~-~~~l--~~~DlVI~~~d~~~~--r~~In~~c~~~~ip~I  235 (236)
                       +... .+++  .++++|||++.++..  ...+.+.|.+.+||++
T Consensus        52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyi   96 (248)
T PRK08057         52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYL   96 (248)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence             4333 4455  378999999999764  4688899999999986

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=91.98  E-value=0.23  Score=48.78  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=31.3

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+|+||+|..++..|+..|+ ++.+++.+
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~  411 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT  411 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            455789999999999999999999999 89998765

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.97  E-value=1.5  Score=37.22  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=26.9

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r   37 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADR   37 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecC
Confidence            34567888885 79999999999999864 666653

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.96  E-value=1  Score=42.68  Aligned_cols=88  Identities=11%  Similarity=0.024  Sum_probs=52.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|+|+|+|+.|-..+..|...|- -.+++.|...    +.              +    ..++|.+   .+++  +.+.
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~----~~--------------~----~~~~l~~---g~~~--~~g~   60 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE----TP--------------P----GQEQLPE---DVEL--HSGG   60 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC----Cc--------------h----hHHHhhc---CCEE--EeCC
Confidence            568999999999999999999865 4677877332    11              0    1122322   3333  2221


Q ss_pred             CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .   +.+.+.++|+||.+..=+... -.-..+++++||++
T Consensus        61 ~---~~~~~~~~d~vV~SpgI~~~~-p~~~~a~~~gi~i~   96 (438)
T PRK04663         61 W---NLEWLLEADLVVTNPGIALAT-PEIQQVLAAGIPVV   96 (438)
T ss_pred             C---ChHHhccCCEEEECCCCCCCC-HHHHHHHHCCCcEE
Confidence            1   234457899998776322221 23445577888875

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.93  E-value=0.29  Score=45.82  Aligned_cols=36  Identities=22%  Similarity=0.025  Sum_probs=31.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+...+|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            3566779999999999999999999999 59999865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06181 short chain dehydrogenase; Provisional

Probab=91.92  E-value=1.4  Score=37.87  Aligned_cols=31  Identities=16%  Similarity=0.191  Sum_probs=25.5

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35788886 8999999999999996 5777664

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.92  E-value=0.26  Score=44.16  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++|+|||+|.+|+.+|..|+.+|. .++++|.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            569999999999999999999996 588888653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.90  E-value=0.25  Score=47.41  Aligned_cols=37  Identities=16%  Similarity=0.039  Sum_probs=32.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            3467899999999999999999999999 688888664

>PRK07814 short chain dehydrogenase; Provisional

Probab=91.85  E-value=1.2  Score=38.63  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=28.1

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++..+|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34567888995 5899999999999998 67777753

>PRK06398 aldose dehydrogenase; Validated

Probab=91.84  E-value=1  Score=38.97  Aligned_cols=74  Identities=14%  Similarity=0.070  Sum_probs=47.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~  191 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.+++.+.-...++     .+-..|+..+. ++.+.+.+.+.+..+.+-.
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~-----~~~~~D~~~~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDV-----DYFKVDVSNKEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccCce-----EEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3556889999 56999999999999997 467777553222122     23345776653 4555666666555566555


Q ss_pred             Ee
Q psy9587         192 NE  193 (236)
Q Consensus       192 ~~  193 (236)
                      +.
T Consensus        78 ~~   79 (258)
T PRK06398         78 NN   79 (258)
T ss_pred             EC
Confidence            54

>cd00704 MDH Malate dehydrogenase

Probab=91.79  E-value=0.24  Score=45.65  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=29.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCce------EEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKS------VCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~------I~LvD~D  149 (236)
                      ++|+|+|+ |.+|+.++..|+..|+-.      |+|+|-+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            36899999 999999999999988865      9999864

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=91.79  E-value=0.31  Score=44.54  Aligned_cols=36  Identities=8%  Similarity=-0.042  Sum_probs=30.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|+|+|.+|.++|+.|...|+. +..+|..
T Consensus       119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~  154 (303)
T PRK06436        119 LLYNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRS  154 (303)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            57789999999999999999988888884 7777754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.78  E-value=0.24  Score=44.81  Aligned_cols=32  Identities=19%  Similarity=0.062  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|+|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            58999999999999999999997 599999764

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=91.76  E-value=0.39  Score=41.02  Aligned_cols=93  Identities=11%  Similarity=0.022  Sum_probs=54.4

Q ss_pred             eEEEEcCChhHHH-HHHHHHH----hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHH-HHHhhCCCceEEE
Q psy9587         118 VYSTGPLTRVGAE-IAKNIIL----SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEA-RAQNLNPNVEVTS  191 (236)
Q Consensus       118 ~VlIVG~GgvGse-vak~La~----~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~-~L~~inp~v~I~~  191 (236)
                      +|.|||+|++-.. .+..++.    ....+|.|+|-|.   +-| .             .+..+++ ..++.++.++|+.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL-~-------------~~~~~~~~~~~~~~~~~~v~~   63 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERL-E-------------IVERLARRMVEEAGADLKVEA   63 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHH-H-------------HHHHHHHHHHHHCTTSSEEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHH-H-------------HHHHHHHHHHHhcCCCeEEEE
Confidence            4789999987554 3333332    3346899998665   222 1             1233444 4456777777766


Q ss_pred             EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i  232 (236)
                      ...     -.+-++++|+||.+.  +..+.+..=.+++.++|+
T Consensus        64 ttd-----~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi  101 (183)
T PF02056_consen   64 TTD-----RREALEGADFVINQIRVGGLEAREIDEEIPLKYGI  101 (183)
T ss_dssp             ESS-----HHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTT
T ss_pred             eCC-----HHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCC
Confidence            544     346688999999886  445555555556666665

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.68  E-value=1.3  Score=39.10  Aligned_cols=34  Identities=18%  Similarity=0.015  Sum_probs=29.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|+.++..+|.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~  153 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4568899999999999999998999987877764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=91.67  E-value=0.65  Score=44.15  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=50.5

Q ss_pred             EEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         119 YSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       119 VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      |.++|.||.|.. +|+.|...|.. ++..|.....                       ..+.|++.  .+.  .+..   
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~-v~~~D~~~~~-----------------------~~~~l~~~--gi~--~~~g---   50 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQ-VSGSDIAENA-----------------------TTKRLEAL--GIP--IYIG---   50 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCe-EEEECCCcch-----------------------HHHHHHHC--cCE--EeCC---
Confidence            678999999998 99999999987 6666632210                       12234433  233  3222   


Q ss_pred             cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                       ...+.+.++|+||.+..=..... .-..++++++|++
T Consensus        51 -~~~~~~~~~d~vV~spgi~~~~p-~~~~a~~~~i~v~   86 (448)
T TIGR01082        51 -HSAENLDDADVVVVSAAIKDDNP-EIVEAKERGIPVI   86 (448)
T ss_pred             -CCHHHCCCCCEEEECCCCCCCCH-HHHHHHHcCCceE
Confidence             23345677999987753222112 2334567788875

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=91.63  E-value=0.28  Score=47.63  Aligned_cols=42  Identities=17%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQ  160 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq  160 (236)
                      +|+|+|+|-+|..+|-.|+..|.| +++.+|.|.-....| +..
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l-~~g   45 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAW-NSD   45 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHH-HcC
Confidence            489999999999999999999865 477788877666666 444

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.63  E-value=0.28  Score=49.90  Aligned_cols=35  Identities=14%  Similarity=0.079  Sum_probs=30.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|.|||+|..|+.+|..++.+|+. ++|+|.+.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~  346 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQ  346 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            456899999999999999999999986 88989653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.62  E-value=1.6  Score=40.78  Aligned_cols=32  Identities=9%  Similarity=-0.083  Sum_probs=27.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ...+|+|+|+||+|...++....+| -+++.+|
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~  197 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT  197 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence            3578999999999999999999999 6677766

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.61  E-value=0.32  Score=44.15  Aligned_cols=37  Identities=14%  Similarity=0.057  Sum_probs=32.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|+|+|++|..++..|...|. +++++|.+.
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~  185 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS  185 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3466899999999999999999999998 899988663

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=91.60  E-value=0.58  Score=43.29  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.+++.|+|.|.||..+|+.+...|+. |...|..
T Consensus       143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~-v~y~~~~  178 (324)
T COG1052         143 DLRGKTLGIIGLGRIGQAVARRLKGFGMK-VLYYDRS  178 (324)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC
Confidence            46788999999999999999999944444 5555533

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.60  E-value=0.25  Score=50.20  Aligned_cols=35  Identities=20%  Similarity=0.094  Sum_probs=30.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|.|||+|..|+.+|..++.+|.. ++|+|.+.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~  346 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQ  346 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCH
Confidence            346799999999999999999999985 89999553

>PRK06487 glycerate dehydrogenase; Provisional

Probab=91.58  E-value=0.27  Score=45.13  Aligned_cols=35  Identities=11%  Similarity=0.021  Sum_probs=29.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|||+|.||.++|+.|...|+. +..+|.
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~  179 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQL  179 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECC
Confidence            46778999999999999999999999985 555563

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=91.57  E-value=0.29  Score=44.80  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|||+|.||.++|+.+...|+. +..+|.
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~  176 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYST  176 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECC
Confidence            46889999999999999999999988885 666675

>PRK08278 short chain dehydrogenase; Provisional

Probab=91.56  E-value=1.6  Score=38.27  Aligned_cols=34  Identities=12%  Similarity=0.050  Sum_probs=27.7

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++++|.| .|++|..+++.|+..|. ++.+++..
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT   39 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            446788899 57999999999999998 47777754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=91.53  E-value=2.1  Score=31.84  Aligned_cols=77  Identities=17%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ..+|+-+|||. |......+.+..-.+++-+|.+.-                    -.+.+.+++.+....-+|+.+..+
T Consensus         2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~--------------------~~~~a~~~~~~~~~~~~i~~~~~d   60 (112)
T PF12847_consen    2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPE--------------------MLEIARERAAEEGLSDRITFVQGD   60 (112)
T ss_dssp             TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHH--------------------HHHHHHHHHHHTTTTTTEEEEESC
T ss_pred             CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHH--------------------HHHHHHHHHHhcCCCCCeEEEECc
Confidence            46789999965 655555555455566888885331                    133455566555556678888888


Q ss_pred             CCcchhhhcCCCcEEEEcC
Q psy9587         196 VDEISEEFVHGFDVVIATS  214 (236)
Q Consensus       196 l~~~~~~~l~~~DlVI~~~  214 (236)
                      + ....+....||+|++..
T Consensus        61 ~-~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   61 A-EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             C-HGGTTTSSCEEEEEECS
T ss_pred             c-ccCcccCCCCCEEEECC
Confidence            7 44455667899999877

...

>PLN02740 Alcohol dehydrogenase-like

Probab=91.51  E-value=1.1  Score=41.31  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=29.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~  232 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN  232 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            34689999999999999999999999878877643

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=91.48  E-value=0.8  Score=39.32  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=26.9

Q ss_pred             cceEEEEcCChhHHHHHHHHH--HhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNII--LSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La--~~GVg~I~LvD~D  149 (236)
                      ..+|+|+|+|.+|..+++.+.  ..|+.-+.++|.|
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            357999999999999998743  4577767788865

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=91.44  E-value=0.31  Score=44.37  Aligned_cols=37  Identities=19%  Similarity=0.061  Sum_probs=32.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK  153 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~  153 (236)
                      ...|+|||.|-+|..+|..|++.|. +++++|.+.+-.
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~   40 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGG   40 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCC
Confidence            3578999999999999999999999 899999887744

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.44  E-value=1.5  Score=44.03  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=29.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|||+|..|...|..|++.|.. ++|+|..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~  225 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN  225 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            446899999999999999999999975 8898854

>PRK05876 short chain dehydrogenase; Provisional

Probab=91.42  E-value=1.2  Score=39.15  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=27.6

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~   39 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVD   39 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            456788888 679999999999999985 7776643

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=91.42  E-value=0.25  Score=45.45  Aligned_cols=33  Identities=12%  Similarity=0.056  Sum_probs=28.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCc
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~  150 (236)
                      +|.|||+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4789999 9999999999999987 5799999644

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.39  E-value=0.32  Score=46.50  Aligned_cols=36  Identities=17%  Similarity=0.076  Sum_probs=31.6

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +...+|+|+|+|.+|..+++.+...|+ +++++|.|.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            467899999999999999999999999 588888654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=91.34  E-value=1.7  Score=41.62  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|||+|..|..+|..|++.|.. ++++|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~  175 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA  175 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            346899999999999999999999985 8898854

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.33  E-value=0.24  Score=50.56  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=30.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|.|||+|..|+.+|..++.+|+. ++|+|.+.
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~  368 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATP  368 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCH
Confidence            456899999999999999999999986 88888653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=91.33  E-value=0.84  Score=45.24  Aligned_cols=106  Identities=15%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHH----HhCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNII----LSGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN  182 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La----~~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~  182 (236)
                      +++..+|+++|+|+.|.-+|+.|+    ..|+      .+|.++|.+-+=..+-   .     +++...|..-+..    
T Consensus       294 ~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r---~-----~~l~~~k~~fa~~----  361 (559)
T PTZ00317        294 PPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTR---G-----DKLAKHKVPFART----  361 (559)
T ss_pred             ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC---C-----ccccHHHHHHhcc----
Confidence            356678999999999999999988    4799      7999999775432211   0     1133333332221    


Q ss_pred             hCCCceEEEEecCCCcchhhhcCCC--cEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587         183 LNPNVEVTSNETKVDEISEEFVHGF--DVVIATSC--NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       183 inp~v~I~~~~~~l~~~~~~~l~~~--DlVI~~~d--~~~~r~~In~~c~~~~ip~I~  236 (236)
                      -++. .    .... ..-.+.++..  |++|.+..  +.=+...|..++.....|+||
T Consensus       362 ~~~~-~----~~~~-~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIF  413 (559)
T PTZ00317        362 DISA-E----DSSL-KTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIF  413 (559)
T ss_pred             cccc-c----cccC-CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence            1000 0    0000 1123455555  88887653  445667777788777778775

>PRK14031 glutamate dehydrogenase; Provisional

Probab=91.32  E-value=0.96  Score=43.70  Aligned_cols=37  Identities=24%  Similarity=0.144  Sum_probs=33.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|.|-||+..|+.|...|..-+.+.|.+
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~  261 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD  261 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4678899999999999999999999999988888833

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.31  E-value=1.2  Score=38.13  Aligned_cols=77  Identities=13%  Similarity=0.061  Sum_probs=47.2

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh-HHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++.++++|.| .|++|.++++.|+..|.. +.++|.+.-. ... .....+-..|+..+ ..+.+.+.+.+..+.+.+-.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~-~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   80 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE-TVD-GRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLV   80 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh-hhc-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3557788888 569999999999999984 7777765422 111 12222334567654 34445555555555555555


Q ss_pred             Ee
Q psy9587         192 NE  193 (236)
Q Consensus       192 ~~  193 (236)
                      +.
T Consensus        81 ~~   82 (252)
T PRK07856         81 NN   82 (252)
T ss_pred             EC
Confidence            53

>PLN02256 arogenate dehydrogenase

Probab=91.30  E-value=0.32  Score=44.45  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=29.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+|||+|.+|+.+++.|...|. ++..+|.+.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD   69 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence            45679999999999999999999885 577888664

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=91.26  E-value=2.6  Score=36.11  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=25.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~   35 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN   35 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46788885 6999999999999997 57777743

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.25  E-value=0.48  Score=42.93  Aligned_cols=31  Identities=13%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|+|+|+|.+|+.++..|...|... .+++.
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g~   34 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVV-RIIGR   34 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeE-EEEee
Confidence            57899999999999999999999984 34443

>PLN02253 xanthoxin dehydrogenase

Probab=91.25  E-value=1.7  Score=37.85  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++++|.| +|++|.++++.|+..|.. +.++|.
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~   50 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDL   50 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence            4556788888 579999999999999975 677764

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.24  E-value=0.25  Score=50.15  Aligned_cols=35  Identities=17%  Similarity=0.039  Sum_probs=30.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~  150 (236)
                      ...+|.|||+|..|+.+|..++ .+|+. ++++|.+.
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~  343 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINP  343 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCH
Confidence            4578999999999999999999 88976 88888653

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.08  E-value=2.1  Score=36.38  Aligned_cols=33  Identities=30%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|.| .|++|.++++.|+..|.. +.+++.
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r   36 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAK-VVIADL   36 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            346788999 689999999999999874 666553

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=91.07  E-value=0.73  Score=47.25  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=59.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      .++..+|++.|+|+.|..+++.|...|+.  +|.++|..-+=..   .|     .+++...|...+..    -++     
T Consensus       182 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~---~r-----~~~~~~~k~~~a~~----~~~-----  244 (752)
T PRK07232        182 KIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYK---GR-----TEGMDEWKAAYAVD----TDA-----  244 (752)
T ss_pred             ChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecC---CC-----cccccHHHHHHhcc----CCC-----
Confidence            35567899999999999999999999995  8999995543211   11     01233334433221    111     


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~  236 (236)
                         .    .-.+.+++.|++|.+.. +.-+...|..+|.   -|+||
T Consensus       245 ---~----~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~~---~piif  281 (752)
T PRK07232        245 ---R----TLAEAIEGADVFLGLSAAGVLTPEMVKSMAD---NPIIF  281 (752)
T ss_pred             ---C----CHHHHHcCCCEEEEcCCCCCCCHHHHHHhcc---CCEEE
Confidence               0    12455667888876653 3345556666653   56664

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=91.05  E-value=1.7  Score=39.66  Aligned_cols=76  Identities=8%  Similarity=0.060  Sum_probs=52.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+++|+|+|.-|-.-+..++. -++.+|.++|.                    ...|++.+++++.+.. .++++....
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r--------------------~~~~a~~f~~~~~~~~-~~~v~~~~~  175 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR--------------------NFDHARAFAERFSKEF-GVDIRPVDN  175 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC--------------------CHHHHHHHHHHHHHhc-CCcEEEeCC
Confidence            4688999999999988888774 35566666552                    2346777888887643 334444321


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNP  217 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~  217 (236)
                           ..+.+.++|+|+.|+.+.
T Consensus       176 -----~~eav~~aDIV~taT~s~  193 (301)
T PRK06407        176 -----AEAALRDADTITSITNSD  193 (301)
T ss_pred             -----HHHHHhcCCEEEEecCCC
Confidence                 356678999999988653

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.02  E-value=1  Score=43.59  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=33.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|=|.|-||..+|+.|...|..-+++.|.+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4678899999999999999999999999988888855

>PRK08264 short chain dehydrogenase; Validated

Probab=91.00  E-value=0.42  Score=40.44  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=30.3

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+|+| .|++|.++++.|+..|..++.+++.+.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            456788898 589999999999999997788888653

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.97  E-value=0.56  Score=47.63  Aligned_cols=34  Identities=24%  Similarity=0.125  Sum_probs=29.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D  149 (236)
                      ...+|.|||+|..|+.+|..++ .+|+. ++|+|.+
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~  337 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIP-VRIKDIN  337 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCC
Confidence            3467999999999999999998 48976 8888866

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=90.95  E-value=1.4  Score=39.38  Aligned_cols=31  Identities=13%  Similarity=0.021  Sum_probs=24.8

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++|+|.| +|++|+.+++.|+..|.. +.+++
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence            35788888 589999999999999975 54444

>PRK12320 hypothetical protein; Provisional

Probab=90.94  E-value=1.4  Score=44.83  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=25.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| +|-+|+.+++.|...|. +++.+|.
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr   32 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQ   32 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            478899 79999999999999996 4666774

>PRK07589 ornithine cyclodeaminase; Validated

Probab=90.91  E-value=1.6  Score=40.77  Aligned_cols=74  Identities=11%  Similarity=0.061  Sum_probs=50.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+++|+|+|..+-.-++.+.. ..+.++.+++.                    ...|++.+++++++.  .+++.... 
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r--------------------~~~~a~~~~~~~~~~--~~~v~~~~-  185 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI--------------------DPAATAKLARNLAGP--GLRIVACR-  185 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC--------------------CHHHHHHHHHHHHhc--CCcEEEeC-
Confidence            4678999999999888876663 35566666542                    234677788888762  44444422 


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                          ...+.+.++|+|++|+.+
T Consensus       186 ----~~~~av~~ADIIvtaT~S  203 (346)
T PRK07589        186 ----SVAEAVEGADIITTVTAD  203 (346)
T ss_pred             ----CHHHHHhcCCEEEEecCC
Confidence                135677899999999854

>PRK12861 malic enzyme; Reviewed

Probab=90.91  E-value=0.78  Score=47.11  Aligned_cols=97  Identities=11%  Similarity=0.089  Sum_probs=59.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      +++..+|++.|+|+.|..+++.|...|+.  +|.++|..-+=..+-   .     +.+...|...+..    -++     
T Consensus       186 ~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r---~-----~~l~~~k~~~a~~----~~~-----  248 (764)
T PRK12861        186 SIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGR---T-----TLMDPDKERFAQE----TDA-----  248 (764)
T ss_pred             ChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCC---c-----ccCCHHHHHHHhh----cCC-----
Confidence            34567899999999999999999999996  899999665422211   1     1133334443322    121     


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~  236 (236)
                         .    .-.+.+++.|++|.+.. +.-+...+..++.   -|+||
T Consensus       249 ---~----~L~eai~~advliG~S~~g~ft~e~v~~Ma~---~PIIF  285 (764)
T PRK12861        249 ---R----TLAEVIGGADVFLGLSAGGVLKAEMLKAMAA---RPLIL  285 (764)
T ss_pred             ---C----CHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc---CCEEE
Confidence               1    12455667788876653 2334555666654   56664

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=90.90  E-value=1.3  Score=46.87  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=30.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.++|+|||+|..|-.+|..|++.|. +++|+|...
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            45789999999999999999999997 599998643

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=90.90  E-value=0.34  Score=44.12  Aligned_cols=34  Identities=15%  Similarity=0.049  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .|+|||+|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            37899999999999999999996 59999987653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=90.84  E-value=0.36  Score=44.75  Aligned_cols=32  Identities=16%  Similarity=0.061  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            48999999999999999999996 599999874

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=90.80  E-value=1.5  Score=39.39  Aligned_cols=33  Identities=18%  Similarity=0.006  Sum_probs=26.6

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            446788888 57999999999999995 5777664

>PRK05717 oxidoreductase; Validated

Probab=90.79  E-value=1.1  Score=38.59  Aligned_cols=78  Identities=14%  Similarity=0.033  Sum_probs=46.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCc
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNV  187 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v  187 (236)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.+.-..    ..+ .....+-..|+.... .+.+.+.+.+..+.+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4557889999 57999999999999996 577777543211    112 222233356676543 233444555555445


Q ss_pred             eEEEEe
Q psy9587         188 EVTSNE  193 (236)
Q Consensus       188 ~I~~~~  193 (236)
                      .+-.+.
T Consensus        86 d~li~~   91 (255)
T PRK05717         86 DALVCN   91 (255)
T ss_pred             CEEEEC
Confidence            554443

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=90.76  E-value=1.3  Score=39.29  Aligned_cols=32  Identities=13%  Similarity=-0.039  Sum_probs=25.7

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++|+|.| +|.+|+.+++.|+..|.. +++++.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r   36 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYT-VKATVR   36 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEc
Confidence            35789999 689999999999999875 555443

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=90.75  E-value=0.37  Score=41.77  Aligned_cols=32  Identities=22%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      -|+|||+|..|..+|..|++.|+. ++|+|.+.
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLR-VLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            379999999999999999999995 88888775

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=90.74  E-value=0.34  Score=44.95  Aligned_cols=33  Identities=24%  Similarity=-0.015  Sum_probs=28.1

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ++.++|.|||+|.+|..+|++|..+|+. +.+.+
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~-Vvv~~   47 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVD-VVVGL   47 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCE-EEEEE
Confidence            4667899999999999999999999984 55544

>PRK06198 short chain dehydrogenase; Provisional

Probab=90.73  E-value=1.1  Score=38.43  Aligned_cols=36  Identities=17%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+| .|++|..+++.|+..|..++.+++.+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4557788899 47999999999999999878888764

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=90.70  E-value=1.7  Score=36.87  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=26.5

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|.| .|++|..+++.|+..|.. +.++|.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r   35 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDL   35 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence            456788898 578999999999998874 666653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=90.69  E-value=0.36  Score=44.64  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|.|||+|.||+.+++-|...|+. +..+|+
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~  173 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP  173 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence            46688999999999999999999999998 666675

>PRK13984 putative oxidoreductase; Provisional

Probab=90.66  E-value=1.6  Score=43.18  Aligned_cols=35  Identities=17%  Similarity=-0.004  Sum_probs=30.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+|||+|..|...|..|.+.|+. ++++|.+.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~  316 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLS  316 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            456899999999999999999999985 88887554

>PRK06932 glycerate dehydrogenase; Provisional

Probab=90.59  E-value=0.36  Score=44.25  Aligned_cols=35  Identities=14%  Similarity=0.082  Sum_probs=29.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|||+|.||.++|+.|...|+. +..+|.
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~  178 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEH  178 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECC
Confidence            46789999999999999999999999986 555553

>PLN02494 adenosylhomocysteinase

Probab=90.58  E-value=0.41  Score=46.54  Aligned_cols=37  Identities=16%  Similarity=0.076  Sum_probs=32.6

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      +..++|+|+|+|.+|..+|+.+...|+ ++.++|.|..
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~  288 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI  288 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            567899999999999999999999999 5888887654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=90.46  E-value=0.31  Score=44.99  Aligned_cols=33  Identities=21%  Similarity=0.082  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            4689999999999999999999997 89999754

>PRK12831 putative oxidoreductase; Provisional

Probab=90.43  E-value=1.3  Score=42.51  Aligned_cols=34  Identities=15%  Similarity=0.043  Sum_probs=29.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.+.|+|||+|..|...|..|++.|.. ++|+|..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~  172 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL  172 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence            457899999999999999999999985 8888843

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=90.39  E-value=1.2  Score=38.33  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccC----CCCCccccCCCcCCCh-HHHHHHHHHHhhCCCce
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKED----VNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNVE  188 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sN----L~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v~  188 (236)
                      ..++|+|.| .|++|.++++.|+..|.. +.++|.+.-....    + ...+.+-..|+... -.+.+.+.+.+..+.+.
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARLAALEI-GPAAIAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            446788898 589999999999999975 7777766432221    2 22222233455433 34455555655555556


Q ss_pred             EEEEe
Q psy9587         189 VTSNE  193 (236)
Q Consensus       189 I~~~~  193 (236)
                      +-++.
T Consensus        83 ~li~~   87 (257)
T PRK07067         83 ILFNN   87 (257)
T ss_pred             EEEEC
Confidence            55553

>PRK06139 short chain dehydrogenase; Provisional

Probab=90.39  E-value=1.9  Score=39.53  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=28.0

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R   39 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR   39 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            34578899996 79999999999999985 777664

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=90.38  E-value=0.38  Score=47.19  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .-|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            458999999999999999999998 58899976543

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=90.38  E-value=0.45  Score=46.27  Aligned_cols=37  Identities=14%  Similarity=-0.016  Sum_probs=32.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|+|+|.+|..+|+.|...|+ +++++|.|.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4678899999999999999999999999 588887664

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=90.36  E-value=0.38  Score=44.08  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ..|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            468999999999999999999998 5999986643

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.33  E-value=1.2  Score=38.29  Aligned_cols=35  Identities=9%  Similarity=0.163  Sum_probs=28.8

Q ss_pred             cccceEEEEcCC---hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|++   |+|..+++.|+..|. ++.+++..
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence            355679999984   799999999999997 57777654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=90.31  E-value=0.33  Score=44.60  Aligned_cols=33  Identities=15%  Similarity=0.030  Sum_probs=29.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|.+|+.+|..|++.|+. ++|+|.+.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~   40 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence            4689999999999999999999975 88998764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=90.30  E-value=1.3  Score=42.99  Aligned_cols=95  Identities=17%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC--CChHHHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI--GKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI--Gk~Kaea~~~~L~~inp~v~I~  190 (236)
                      .....+|+|||+|.-|-..+..|++.|+. +++++.....-    .+ ..|+--+.  -+.=++-..+.|.+..  +++.
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~~~~G----Gl-l~yGIP~~kl~k~i~d~~i~~l~~~G--v~~~  191 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD-VTVFERVALDG----GL-LLYGIPDFKLPKDILDRRLELLERSG--VEFK  191 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCe-EEEeCCcCCCc----ee-EEecCchhhccchHHHHHHHHHHHcC--eEEE
Confidence            34457999999999999999999999998 66666433211    22 23332222  2222445556666665  5554


Q ss_pred             EEecCC-CcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKV-DEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l-~~~~~~~l~~~DlVI~~~d  215 (236)
                      ....-- +-...++++.||.|+.|+.
T Consensus       192 ~~~~vG~~it~~~L~~e~Dav~l~~G  217 (457)
T COG0493         192 LNVRVGRDITLEELLKEYDAVFLATG  217 (457)
T ss_pred             EcceECCcCCHHHHHHhhCEEEEecc
Confidence            433221 2223566788999998875

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=90.22  E-value=1.5  Score=40.72  Aligned_cols=30  Identities=13%  Similarity=-0.065  Sum_probs=25.3

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEe
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLL  146 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~Lv  146 (236)
                      .+|+|+| .|-+|.++++.|.....-+|+.+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~   34 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTAL   34 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence            5789998 79999999999997666677777

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=90.18  E-value=1.4  Score=37.23  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhhCCCceEEEEecCCCcch-hh---hc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         172 RAKSSEARAQNLNPNVEVTSNETKVDEIS-EE---FV--HGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       172 Kaea~~~~L~~inp~v~I~~~~~~l~~~~-~~---~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      -++.++++|++.+|.++|..+...+.+.. .+   .+  ++.|+|+.+...+....++.+.....+.+++
T Consensus        60 v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~  129 (177)
T TIGR00696        60 VLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVM  129 (177)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEE
Confidence            36778999999999999988866665432 21   22  5799999999999999999988777766654

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=90.13  E-value=2.1  Score=39.17  Aligned_cols=36  Identities=8%  Similarity=0.075  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTK  153 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~  153 (236)
                      +|.|||.||-|+.++..|...|+.  .+..+|.|.-..
T Consensus         2 ~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L   39 (303)
T cd02191           2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDL   39 (303)
T ss_pred             EEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHH
Confidence            478899999999999999999875  477778887433

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=90.10  E-value=0.41  Score=44.00  Aligned_cols=32  Identities=22%  Similarity=-0.012  Sum_probs=26.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|||+|..|..++++|..+|+. +.+.+
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~   33 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL   33 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence            557899999999999999999999985 44433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=90.08  E-value=0.83  Score=40.86  Aligned_cols=103  Identities=19%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             EEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC--CCc
Q psy9587         121 TGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK--VDE  198 (236)
Q Consensus       121 IVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~--l~~  198 (236)
                      +||+|..|..++.+|+..|. +++++|.+.-....+ ..        .|...+....+.+.  +.++-+.+.+..  +.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l-~~--------~g~~~~~s~~~~~~--~advVil~vp~~~~~~~   68 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEA-VA--------AGAQAAASPAEAAE--GADRVITMLPAGQHVIS   68 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHH-HH--------cCCeecCCHHHHHh--cCCEEEEeCCChHHHHH
Confidence            48999999999999999996 588888764332223 11        12111112222222  224444444321  110


Q ss_pred             -----ch-hhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         199 -----IS-EEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       199 -----~~-~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                           .. ...+..-.+||+++ ..+.....+.+.+.++|+.|+
T Consensus        69 v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~v  112 (288)
T TIGR01692        69 VYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFM  112 (288)
T ss_pred             HHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence                 01 11233345777765 457777889999988888765

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=90.05  E-value=0.4  Score=43.58  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      |+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~~-v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGLK-IALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCCE-EEEEeCCCc
Confidence            78999999999999999999984 888887653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.03  E-value=0.48  Score=45.20  Aligned_cols=37  Identities=14%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      +..++|+|+|+|.+|..+++.+...|+. +.++|.|..
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~  229 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPI  229 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChh
Confidence            5678999999999999999999999995 888886653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=90.03  E-value=2.5  Score=36.57  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=24.6

Q ss_pred             EEEEc-CChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         119 YSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       119 VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      |+|.| +|-+|+.+++.|+..|. +++.++.+.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   32 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH-EVTILTRSP   32 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC-EEEEEeCCC
Confidence            46777 68899999999999996 477777554

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06185 hypothetical protein; Provisional

Probab=90.02  E-value=0.43  Score=44.16  Aligned_cols=32  Identities=16%  Similarity=0.071  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~   38 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKH   38 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            4689999999999999999999985 8889965

>PRK06841 short chain dehydrogenase; Provisional

Probab=89.98  E-value=0.59  Score=39.94  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~   48 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRS   48 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45578999995 89999999999999974 7777654

>PRK12744 short chain dehydrogenase; Provisional

Probab=89.98  E-value=2.4  Score=36.46  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=25.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCL  145 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~L  145 (236)
                      ++.++|+|.| .|++|.++++.|+..|...+.+
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            3456788888 6699999999999999874544

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=89.96  E-value=1.4  Score=38.38  Aligned_cols=35  Identities=26%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~   43 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN   43 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35577888885 7999999999999998 48888764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=89.95  E-value=2.6  Score=39.04  Aligned_cols=33  Identities=12%  Similarity=0.050  Sum_probs=26.6

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|.|+ |-||+++++.|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            3367888996 8999999999999886 4777774

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.92  E-value=0.39  Score=48.10  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||.|-+|+.+|..|++.|.. ++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~-V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQ-VTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            4689999999999999999999985 99999874

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=89.88  E-value=0.39  Score=44.31  Aligned_cols=31  Identities=16%  Similarity=0.090  Sum_probs=27.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~  148 (236)
                      +|+|+|+ |.||+.++..|+..|+-      .|.|+|-
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~   38 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI   38 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence            4789999 99999999999998886      5999995

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=89.87  E-value=0.46  Score=44.03  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh--CCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D~  150 (236)
                      ..|+|||+|.+|+.+|..|++.  |. +++|+|...
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            3589999999999999999998  75 699999763

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.86  E-value=1.9  Score=39.18  Aligned_cols=32  Identities=16%  Similarity=0.052  Sum_probs=27.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..+|+|.|+|++|..++..+...|+ ++..+|.
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~  198 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDI  198 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcC
Confidence            4689999999999999999999998 4666664

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=89.85  E-value=1.4  Score=40.80  Aligned_cols=86  Identities=16%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|+||| .|.+|.++++.|...|.-  ++.++-..                .+.|+. ..         .....+...  
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~----------------~~~g~~-~~---------~~~~~~~~~--   52 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD----------------RSAGRK-VT---------FKGKELEVN--   52 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc----------------ccCCCe-ee---------eCCeeEEEE--
Confidence            378899 778999999999986554  33333211                111210 00         011122221  


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .++   .+.+.++|+||.|+.+..++....++ .+.|..+|
T Consensus        53 ~~~---~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VI   89 (339)
T TIGR01296        53 EAK---IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVI   89 (339)
T ss_pred             eCC---hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEE
Confidence            121   23347899999999988777766554 44565544

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=89.81  E-value=0.52  Score=45.68  Aligned_cols=35  Identities=9%  Similarity=0.064  Sum_probs=30.5

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+|+||+|..++..|+..|+ +++++|.+
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~  364 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRT  364 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            355789999999999999999999998 78888754

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=89.80  E-value=0.75  Score=42.74  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|.|+|+|+=|+.+|+.|+..| ..++++..|.-...++ +... -..                +.-|++.   .+..+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i-~~~~-~N~----------------~yLp~i~---lp~~l   59 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEI-NETR-ENP----------------KYLPGIL---LPPNL   59 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHH-HhcC-cCc----------------cccCCcc---CCccc
Confidence            36889999999999999999999 5577776543333333 1110 000                0011111   11111


Q ss_pred             --CcchhhhcCCCcEEEEcCCCHHHHHHHHHH
Q psy9587         197 --DEISEEFVHGFDVVIATSCNPNQLIKIDDF  226 (236)
Q Consensus       197 --~~~~~~~l~~~DlVI~~~d~~~~r~~In~~  226 (236)
                        +.+-.+.++++|+|+.++.+...+..+.++
T Consensus        60 ~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          60 KATTDLAEALDGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             ccccCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence              112245667789888888887777777665

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=89.79  E-value=0.42  Score=46.02  Aligned_cols=31  Identities=23%  Similarity=0.113  Sum_probs=27.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..|+|||+|-+|+++|..|++.|+. ++|+|.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~   33 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM   33 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence            4689999999999999999999986 888883

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=89.78  E-value=1.5  Score=39.92  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=24.2

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+|+|.| +|.+|+.+++.|+..|.. +++++
T Consensus        11 ~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~   41 (353)
T PLN02896         11 GTYCVTGATGYIGSWLVKLLLQRGYT-VHATL   41 (353)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence            4688899 688999999999999875 54444

>PRK06823 ornithine cyclodeaminase; Validated

Probab=89.76  E-value=2.3  Score=39.03  Aligned_cols=76  Identities=9%  Similarity=0.051  Sum_probs=50.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+++|+|+|..+-.-++.+.. ..+.++.++|                    ....|++++++.+++.  .+++... 
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~--------------------r~~~~a~~~~~~~~~~--~~~v~~~-  183 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWG--------------------RSETALEEYRQYAQAL--GFAVNTT-  183 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC--------------------CCHHHHHHHHHHHHhc--CCcEEEE-
Confidence            34688999999999999888764 2345555544                    2234677778777654  2344332 


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNP  217 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~  217 (236)
                          +...+.+.++|+|+.|+.+.
T Consensus       184 ----~~~~~av~~ADIV~taT~s~  203 (315)
T PRK06823        184 ----LDAAEVAHAANLIVTTTPSR  203 (315)
T ss_pred             ----CCHHHHhcCCCEEEEecCCC
Confidence                22356678999999988653

>PRK08265 short chain dehydrogenase; Provisional

Probab=89.71  E-value=0.89  Score=39.42  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++.++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~   40 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDA   40 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            35578899995 7999999999999998 588877653

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=89.70  E-value=2.4  Score=42.80  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus       411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~  447 (676)
T TIGR02632       411 TLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLN  447 (676)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            345678999995 7999999999999997 57777743

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.70  E-value=0.53  Score=44.77  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=30.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|||+|.+|..+|+.+...|+. +..+|.
T Consensus       148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~  182 (409)
T PRK11790        148 EVRGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDI  182 (409)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            57889999999999999999999999985 666674

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.68  E-value=0.38  Score=44.63  Aligned_cols=33  Identities=30%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence            3589999999999999999999985 89998764

>PRK06179 short chain dehydrogenase; Provisional

Probab=89.67  E-value=2  Score=37.13  Aligned_cols=75  Identities=11%  Similarity=0.091  Sum_probs=45.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|.| .|++|.++++.|+..|.. +++++.+.-..... ..- -+-..|+..+. .+.+.+.+.+....+.+-.+..
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~-~~~-~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~a   81 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAAPI-PGV-ELLELDVTDDASVQAAVDEVIARAGRIDVLVNNA   81 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcccc-CCC-eeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            4678888 579999999999999976 77777664333323 221 22245665543 3445555555555555555443

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=89.66  E-value=1.9  Score=40.11  Aligned_cols=89  Identities=9%  Similarity=-0.024  Sum_probs=54.4

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHH--hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIIL--SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~--~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +..+|+|||+ |-+|.++++.|..  .-+.+|.++-.+.    .. ++.+-+                 .  ...+.++ 
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~----sa-G~~~~~-----------------~--~~~~~v~-   57 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEE----SA-GETLRF-----------------G--GKSVTVQ-   57 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccC----cC-CceEEE-----------------C--CcceEEE-
Confidence            3467899996 7799999999998  5677787775442    12 222111                 0  1122333 


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                         .++   ...++++|+||.|+.+..+..+..++ .+.|..+|
T Consensus        58 ---~~~---~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VI   94 (336)
T PRK08040         58 ---DAA---EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVI   94 (336)
T ss_pred             ---eCc---hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEE
Confidence               111   12246899999999777666655555 45677665

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=89.66  E-value=7  Score=29.20  Aligned_cols=92  Identities=13%  Similarity=0.002  Sum_probs=48.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ..+|+-+|||. |......+...+-++++-+|...                    ...+.+++.+....- .+++.....
T Consensus        20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~--------------------~~~~~a~~~~~~~~~-~~~~~~~~~   77 (124)
T TIGR02469        20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNP--------------------EALRLIERNARRFGV-SNIVIVEGD   77 (124)
T ss_pred             CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCH--------------------HHHHHHHHHHHHhCC-CceEEEecc
Confidence            35788999976 76655555555557788888321                    123444444444321 134444443


Q ss_pred             CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      ...........||+|+...........+.++.+.
T Consensus        78 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  111 (124)
T TIGR02469        78 APEALEDSLPEPDRVFIGGSGGLLQEILEAIWRR  111 (124)
T ss_pred             ccccChhhcCCCCEEEECCcchhHHHHHHHHHHH
Confidence            3211112235899999875433333444444443

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=89.66  E-value=0.44  Score=44.17  Aligned_cols=31  Identities=19%  Similarity=0.190  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      -|+|||+|..|+..|..|++.|.. +.|+|..
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIE-TILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence            489999999999999999999986 7788765

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK07035 short chain dehydrogenase; Provisional

Probab=89.65  E-value=0.83  Score=39.02  Aligned_cols=78  Identities=15%  Similarity=0.084  Sum_probs=45.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCC------CCccccCCCcCCChH-HHHHHHHHHhhCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVN------TAQFLAPHEDIGKNR-AKSSEARAQNLNP  185 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~------~rq~l~~~~dIGk~K-aea~~~~L~~inp  185 (236)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.+.-....+.      ..++.+-..|++... .+.+.+.+.+..+
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4556788898 56999999999999997 5888876431111110      111122234665543 3445555555555


Q ss_pred             CceEEEE
Q psy9587         186 NVEVTSN  192 (236)
Q Consensus       186 ~v~I~~~  192 (236)
                      .+.+-.+
T Consensus        85 ~id~li~   91 (252)
T PRK07035         85 RLDILVN   91 (252)
T ss_pred             CCCEEEE
Confidence            5554443

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=89.63  E-value=2.9  Score=44.36  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=53.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCC--CcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH--EDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~--~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +.++|+|||+|..|...|..|++.|. +++|+|...    .+ +.+.-+.-  .-.++.-.+...+.+.++  .+++...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~----~~-GG~l~~gip~~rl~~e~~~~~~~~l~~~--Gv~~~~~  500 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALH----VV-GGVLQYGIPSFRLPRDIIDREVQRLVDI--GVKIETN  500 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC----CC-cceeeccCCccCCCHHHHHHHHHHHHHC--CCEEEeC
Confidence            45689999999999999999999998 488988543    23 22211111  112222233444455554  3444332


Q ss_pred             ecCCC-cch-hhhc--CCCcEEEEcCCC
Q psy9587         193 ETKVD-EIS-EEFV--HGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~-~~~-~~~l--~~~DlVI~~~d~  216 (236)
                      . .+. +.. .++.  .+||-||.|++.
T Consensus       501 ~-~vg~~~~~~~l~~~~~yDaViIATGa  527 (1006)
T PRK12775        501 K-VIGKTFTVPQLMNDKGFDAVFLGVGA  527 (1006)
T ss_pred             C-ccCCccCHHHHhhccCCCEEEEecCC
Confidence            1 111 111 2222  369999998865

>PRK11579 putative oxidoreductase; Provisional

Probab=89.62  E-value=2.1  Score=39.14  Aligned_cols=32  Identities=13%  Similarity=-0.063  Sum_probs=21.5

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~  148 (236)
                      .+|+|||+|.+|.. .+..+... |+.-..++|.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~   38 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS   38 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            57899999999974 56666553 4443445553

>PRK07102 short chain dehydrogenase; Provisional

Probab=89.61  E-value=2.6  Score=35.79  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=25.3

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|.| .|++|..+++.|+..|.. +.++|.+
T Consensus         3 ~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~   34 (243)
T PRK07102          3 KILIIGATSDIARACARRYAAAGAR-LYLAARD   34 (243)
T ss_pred             EEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCC
Confidence            567788 689999999999999974 7777744

>PLN00016 RNA-binding protein; Provisional

Probab=89.57  E-value=2.8  Score=38.72  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             ccceEEEE----c-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587         115 KIYVYSTG----P-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       115 k~~~VlIV----G-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I  189 (236)
                      ...+|+|+    | .|-+|+.+++.|+..|. ++++++.+.-....+ .-     ..      .... ..+..  ..  +
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~-~~-----~~------~~~~-~~l~~--~~--v  112 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKM-KK-----EP------FSRF-SELSS--AG--V  112 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhh-cc-----Cc------hhhh-hHhhh--cC--c
Confidence            44678999    7 58899999999999995 577777543221111 00     00      0000 11111  12  3


Q ss_pred             EEEecCCCcchhhhc--CCCcEEEEcCC-CHHHHHHHHHHHHHcCC-cEE
Q psy9587         190 TSNETKVDEISEEFV--HGFDVVIATSC-NPNQLIKIDDFCRSKSK-ISL  235 (236)
Q Consensus       190 ~~~~~~l~~~~~~~l--~~~DlVI~~~d-~~~~r~~In~~c~~~~i-p~I  235 (236)
                      +....++.+ -.+.+  .++|+||.+.. .......+-+.|++.|+ .||
T Consensus       113 ~~v~~D~~d-~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        113 KTVWGDPAD-VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             eEEEecHHH-HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            334444332 11222  47899998864 34455667788888887 455

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=89.55  E-value=0.51  Score=43.47  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=28.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~D  149 (236)
                      .+|+|+|+ |.+|+.++..|+..|+-      .|.++|-.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~   42 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP   42 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence            46899998 99999999999998875      79999863

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02827 Alcohol dehydrogenase-like

Probab=89.52  E-value=1.5  Score=40.57  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +...|+|+|+|++|..++..+...|+..+..+|.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~  226 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI  226 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            4578999999999999999988999987777763

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=89.52  E-value=1.6  Score=40.86  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHH-hCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIIL-SGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~-~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ..+|.|||+ |-+|.++++.|.. ..+  .++.++...                ...|+.=      .+.  ...+.++.
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~----------------~saGk~~------~~~--~~~l~v~~   60 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK----------------RSAGKTV------QFK--GREIIIQE   60 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc----------------ccCCCCe------eeC--CcceEEEe
Confidence            357899996 7789999998884 443  345555422                2233320      000  01112221


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                          +   +.+.++++|+||.|..+..++.+..+ +.+.|.++|
T Consensus        61 ----~---~~~~~~~~Divf~a~~~~~s~~~~~~-~~~~G~~VI   96 (347)
T PRK06728         61 ----A---KINSFEGVDIAFFSAGGEVSRQFVNQ-AVSSGAIVI   96 (347)
T ss_pred             ----C---CHHHhcCCCEEEECCChHHHHHHHHH-HHHCCCEEE
Confidence                1   22334789999999987766655555 455676665

>PRK08507 prephenate dehydrogenase; Validated

Probab=89.50  E-value=0.57  Score=41.59  Aligned_cols=32  Identities=16%  Similarity=0.102  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|...|.. .++.+|.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~   34 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN   34 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            588999999999999999999973 67777764

>PRK08324 short chain dehydrogenase; Validated

Probab=89.49  E-value=1.9  Score=43.45  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~  455 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD  455 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            3457899999 59999999999999998 58887743

>KOG1201|consensus

Probab=89.47  E-value=0.98  Score=41.43  Aligned_cols=80  Identities=14%  Similarity=0.041  Sum_probs=56.1

Q ss_pred             cccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCc--cccc-CCCCCc---cccCCCcCCChH-HHHHHHHHHhhCC
Q psy9587         114 YKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGV--VTKE-DVNTAQ---FLAPHEDIGKNR-AKSSEARAQNLNP  185 (236)
Q Consensus       114 lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~--Ve~s-NL~~rq---~l~~~~dIGk~K-aea~~~~L~~inp  185 (236)
                      .+...|+|-|.| |+|-++|..+++-|. ++.++|-..  .+++ +. .|+   ...-..|+++.+ ...+++++++-.-
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~-~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKE-IRKIGEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHH-HHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            466789999987 899999999999999 788888432  2221 11 221   222345777654 7888888888888


Q ss_pred             CceEEEEecC
Q psy9587         186 NVEVTSNETK  195 (236)
Q Consensus       186 ~v~I~~~~~~  195 (236)
                      .+.|-+.+..
T Consensus       114 ~V~ILVNNAG  123 (300)
T KOG1201|consen  114 DVDILVNNAG  123 (300)
T ss_pred             CceEEEeccc
Confidence            8887776544

>TIGR02028 ChlP geranylgeranyl reductase

Probab=89.46  E-value=0.49  Score=44.34  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=27.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .|+|||+|..|+..|..|++.|+. +.|+|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            589999999999999999999986 7777753

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=89.45  E-value=1.2  Score=45.01  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      .+|+|||+|.+|..+++.|...|. .++.++|.+
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~   37 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRR   37 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            568999999999999999999995 468888854

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.40  E-value=0.53  Score=42.83  Aligned_cols=31  Identities=19%  Similarity=0.035  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|+|+|..|+.++..|+..|.. ++++|.+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~   36 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVP-VRLWARR   36 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            589999999999999999999864 8888875

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.39  E-value=0.69  Score=39.16  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=29.8

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++..+++|+|+ |++|..+++.|+..|. ++.++|.+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            34567899996 9999999999999997 478888654

>PRK06184 hypothetical protein; Provisional

Probab=89.34  E-value=0.46  Score=45.68  Aligned_cols=32  Identities=16%  Similarity=0.109  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            4689999999999999999999996 8888853

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=89.24  E-value=2.7  Score=42.87  Aligned_cols=34  Identities=12%  Similarity=0.045  Sum_probs=30.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|||+|..|...|..|++.|.. ++|+|..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~  463 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL  463 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            456899999999999999999999985 8898864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=89.24  E-value=0.7  Score=39.31  Aligned_cols=35  Identities=17%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~   38 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRS   38 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCc
Confidence            45678899996 6999999999999998 47776643

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08628 short chain dehydrogenase; Provisional

Probab=89.23  E-value=2.1  Score=36.70  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=27.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .|++|..+++.|+..|.. +.+++.+
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~   40 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRS   40 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCC
Confidence            4567889998 569999999999999986 5555543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=89.22  E-value=2.8  Score=37.80  Aligned_cols=34  Identities=18%  Similarity=0.028  Sum_probs=28.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|.|+|++|..++..+...|+..+..+|.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~  193 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3468999999999999999999999987776664

>PRK06847 hypothetical protein; Provisional

Probab=89.15  E-value=0.61  Score=42.48  Aligned_cols=33  Identities=15%  Similarity=0.001  Sum_probs=28.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...|+|||+|..|..+|..|.+.|+. ++|+|.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~   36 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEID   36 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecC
Confidence            35789999999999999999999996 7888754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=89.15  E-value=0.52  Score=43.78  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|.+|..+|-.|++.|+. ++|+|..
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLD-VTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence            4589999999999999999999965 8898876

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=89.13  E-value=3.3  Score=41.48  Aligned_cols=34  Identities=12%  Similarity=-0.004  Sum_probs=25.9

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|.| +|-+|+++++.|...|--+++.+|.
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            345799999 5889999999999864235666664

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=89.12  E-value=0.45  Score=43.50  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=27.5

Q ss_pred             EEEEcCChhHHHHHHHHHHhC-CceEEEeeCCc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSG-VKSVCLLDSGV  150 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~G-Vg~I~LvD~D~  150 (236)
                      |+|||+|..|+.+|..|++.| +. ++|+|...
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~   33 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKIK-IALIEANS   33 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCce-EEEEeCCC
Confidence            789999999999999999999 85 78888653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07825 short chain dehydrogenase; Provisional

Probab=89.12  E-value=1.1  Score=39.01  Aligned_cols=76  Identities=12%  Similarity=0.064  Sum_probs=47.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCccccc----CCCCCccccCCCcCCChH-HHHHHHHHHhhCCCce
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKE----DVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVE  188 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~s----NL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~  188 (236)
                      +..+|+|.|+ ||+|..+++.|+..|.. +.+.+.+.-...    .+ . ...+-..|+..+. .+.+.+.+.+.+..+.
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKETAAEL-G-LVVGGPLDVTDPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh-c-cceEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4467889995 79999999999999986 777765432211    12 1 1123345666544 3445556666656666


Q ss_pred             EEEEe
Q psy9587         189 VTSNE  193 (236)
Q Consensus       189 I~~~~  193 (236)
                      +-.+.
T Consensus        81 ~li~~   85 (273)
T PRK07825         81 VLVNN   85 (273)
T ss_pred             EEEEC
Confidence            55554

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.10  E-value=0.55  Score=38.76  Aligned_cols=34  Identities=24%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++.++|+|||.|-.|..++..|+..| .+++++=
T Consensus       164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~  197 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT  197 (203)
T ss_dssp             GCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred             hcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence            467789999999999999999999999 7888864

...

>KOG2250|consensus

Probab=89.09  E-value=2.4  Score=41.32  Aligned_cols=39  Identities=28%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      .++.++|.|=|+|.+|++.++.|...|-.-|.|.|.+-+
T Consensus       248 ~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~  286 (514)
T KOG2250|consen  248 GIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGV  286 (514)
T ss_pred             CcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCcee
Confidence            467889999999999999999999999998888886654

>PLN02306 hydroxypyruvate reductase

Probab=89.06  E-value=0.56  Score=44.36  Aligned_cols=36  Identities=14%  Similarity=0.026  Sum_probs=29.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.||.++|+.|. ..|+. +..+|..
T Consensus       162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~  198 (386)
T PLN02306        162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLY  198 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            477899999999999999999986 67874 6677753

>PRK08244 hypothetical protein; Provisional

Probab=89.03  E-value=0.5  Score=45.29  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~   34 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVK-TCVIERL   34 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            3589999999999999999999996 7888843

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.00  E-value=3.6  Score=36.84  Aligned_cols=33  Identities=18%  Similarity=0.069  Sum_probs=26.8

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ++.++++|.|+ ||+|.++++.|+..|.. +.+.|
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~   43 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVND   43 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEec
Confidence            45678889995 58999999999999985 66655

>PRK06753 hypothetical protein; Provisional

Probab=88.99  E-value=0.61  Score=42.52  Aligned_cols=31  Identities=13%  Similarity=-0.006  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .|+|||+|..|..+|..|++.|+. ++|++.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~   32 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKN   32 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            589999999999999999999997 7888744

>PRK09126 hypothetical protein; Provisional

Probab=88.95  E-value=0.55  Score=43.13  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~   36 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQP   36 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence            4589999999999999999999996 78888654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=88.95  E-value=0.78  Score=39.36  Aligned_cols=35  Identities=14%  Similarity=0.085  Sum_probs=28.6

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ |++|.++++.|+..|.. +.+.|.+
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~   43 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRD   43 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCC
Confidence            35578999995 89999999999999984 7777754

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.94  E-value=1.9  Score=39.37  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~  221 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN  221 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            45789999999999999999999999778777644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=88.89  E-value=0.59  Score=38.58  Aligned_cols=30  Identities=17%  Similarity=0.250  Sum_probs=23.1

Q ss_pred             EEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         120 STGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       120 lIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|||+|..|-.+|..|...|+..++|+|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~   30 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN   30 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence            589999999999999999999889999954

...

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=88.82  E-value=0.84  Score=32.23  Aligned_cols=28  Identities=14%  Similarity=0.089  Sum_probs=24.4

Q ss_pred             EEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         121 TGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       121 IVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      |||+|-.|...|..|.+.|. +++|+|..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~   28 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN   28 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            79999999999999999999 69998844

...

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=88.80  E-value=2.6  Score=37.77  Aligned_cols=34  Identities=9%  Similarity=0.073  Sum_probs=23.1

Q ss_pred             cceEEEEcCChhHH-HHHHHHHHhC--CceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGA-EIAKNIILSG--VKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGs-evak~La~~G--Vg~I~LvD~D  149 (236)
                      ..+|+|||||+++. ..+..+...+  +.-+.++|.+
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~   39 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD   39 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC
Confidence            46789999998775 4777777766  3445555533

>PRK08013 oxidoreductase; Provisional

Probab=88.77  E-value=0.53  Score=43.81  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~   36 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV   36 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence            4589999999999999999999986 88888654

>PRK08643 acetoin reductase; Validated

Probab=88.71  E-value=2  Score=36.77  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.1

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++++|+| .|++|..+++.|+..|. ++.++|.+
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~   35 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYN   35 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4677777 66999999999999997 47777754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=88.68  E-value=7.4  Score=34.08  Aligned_cols=35  Identities=17%  Similarity=-0.045  Sum_probs=26.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ...+|+-+|||+ | .++..++..|.++++-+|.|..
T Consensus       119 ~~~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~  153 (250)
T PRK00517        119 PGKTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQ  153 (250)
T ss_pred             CCCEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHH
Confidence            457899999987 6 4555678889888888886643

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.66  E-value=0.5  Score=43.50  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=27.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      .|+|||+|..|..+|..|++.|.| +++|+|..
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~   35 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAA   35 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence            479999999999999999999743 58888864

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=88.65  E-value=2.2  Score=39.57  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=49.4

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+|+|+|+ |-+|.++++.|...+.-  ++..+-..                +..|++        +.  ......... 
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~----------------~~aG~~--------l~--~~~~~l~~~-   57 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS----------------ESAGHS--------VP--FAGKNLRVR-   57 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc----------------ccCCCe--------ec--cCCcceEEe-
Confidence            57899995 78999999999965543  33343211                122332        00  111111111 


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                       .+   ...-++++|+||.|+.+..+.. +...+.+.|+.+|
T Consensus        58 -~~---~~~~~~~vD~vFla~p~~~s~~-~v~~~~~~G~~VI   94 (336)
T PRK05671         58 -EV---DSFDFSQVQLAFFAAGAAVSRS-FAEKARAAGCSVI   94 (336)
T ss_pred             -eC---ChHHhcCCCEEEEcCCHHHHHH-HHHHHHHCCCeEE
Confidence             11   1112478999999998655554 4555566777765

>PRK05855 short chain dehydrogenase; Validated

Probab=88.65  E-value=2.5  Score=40.35  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=28.0

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r  347 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI  347 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            45567889985 89999999999999986 777664

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=88.65  E-value=0.56  Score=46.98  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=31.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK  153 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~  153 (236)
                      .-|+|||.|.+|+.+|..|++.|.. +.|+|.+.+..
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a~  107 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFSS  107 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccCC
Confidence            5689999999999999999999996 88998775543

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=88.64  E-value=0.57  Score=43.05  Aligned_cols=30  Identities=20%  Similarity=0.193  Sum_probs=26.8

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      |+|||+|..|..+|..|++.|. ++.|+|..
T Consensus         2 viIiGaG~AGl~~A~~la~~g~-~v~liE~~   31 (388)
T TIGR01790         2 LAVIGGGPAGLAIALELARPGL-RVQLIEPH   31 (388)
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            7899999999999999999998 48888854

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=88.64  E-value=0.5  Score=43.93  Aligned_cols=32  Identities=13%  Similarity=0.110  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|.+|..+|-.|++.|+. ++|+|..
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            4689999999999999999999986 8888864

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=88.61  E-value=2.3  Score=38.49  Aligned_cols=31  Identities=16%  Similarity=0.198  Sum_probs=25.9

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| .|.+|+.+++.|...|...+.++|.
T Consensus         3 ~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          3 KILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             EEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            578888 5789999999999999876767664

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.60  E-value=2.8  Score=36.37  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             cccceEEEEcC---ChhHHHHHHHHHHhCCceEEEeeCCc----ccc--cCCCCCccccCCCcCCChH-HHHHHHHHHhh
Q psy9587         114 YKIYVYSTGPL---TRVGAEIAKNIILSGVKSVCLLDSGV----VTK--EDVNTAQFLAPHEDIGKNR-AKSSEARAQNL  183 (236)
Q Consensus       114 lk~~~VlIVG~---GgvGsevak~La~~GVg~I~LvD~D~----Ve~--sNL~~rq~l~~~~dIGk~K-aea~~~~L~~i  183 (236)
                      ++.++++|.|+   +|+|.++++.|+..|.. +.+.|.+.    .+.  ..+ ..+..+-..|+..+. ++.+.+.+.+.
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~   82 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFGRALRLTERIAKRL-PEPAPVLELDVTNEEHLASLADRVREH   82 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCccchhHHHHHHHhc-CCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence            45578999996   79999999999999985 77776432    111  122 222233345676543 45555555554


Q ss_pred             CCCceEEEE
Q psy9587         184 NPNVEVTSN  192 (236)
Q Consensus       184 np~v~I~~~  192 (236)
                      ...+.+-++
T Consensus        83 ~g~iD~li~   91 (256)
T PRK07889         83 VDGLDGVVH   91 (256)
T ss_pred             cCCCcEEEE
Confidence            444454444

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.59  E-value=0.55  Score=43.29  Aligned_cols=32  Identities=16%  Similarity=0.053  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~~~   34 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIK-TTIFESKS   34 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCe-EEEecCCC
Confidence            489999999999999999999985 89998653

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=88.58  E-value=3.2  Score=37.04  Aligned_cols=28  Identities=18%  Similarity=0.083  Sum_probs=23.5

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEE
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVC  144 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~  144 (236)
                      .++|+|.| .|.+|+.+++.|+..|.. ++
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~~-V~   33 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGYT-VK   33 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EE
Confidence            35789999 689999999999999875 44

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=88.58  E-value=2.3  Score=38.58  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=29.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|.|+|++|..++..+...|++++..++.
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~  210 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG  210 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            4568999999999999999999999977777764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR01746 Thioester-redct thioester reductase domain

Probab=88.57  E-value=4.5  Score=35.92  Aligned_cols=30  Identities=13%  Similarity=0.050  Sum_probs=23.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEee
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD  147 (236)
                      +|+|.|+ |.+|+++++.|+..|. .++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~   32 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV   32 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            3678885 8999999999999884 3566554

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=88.56  E-value=1.4  Score=42.61  Aligned_cols=96  Identities=13%  Similarity=-0.045  Sum_probs=59.2

Q ss_pred             cceEEEEcCChhHHHHHHH-HH----HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKN-II----LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~-La----~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      ..+|.|||.|+++..-.-. +.    ...+.+|.|+|-|.       .|+-         -=...+..-+.+.++.++|+
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~-------~r~~---------~i~~~~~~~v~~~g~~~kv~   66 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDE-------ERLK---------IIAILAKKLVEEAGAPVKVE   66 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCH-------HHHH---------HHHHHHHHHHHhhCCCeEEE
Confidence            4578899999876543221 11    34557888888544       2220         00234555567777777776


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i  232 (236)
                      ....     -.+-|+++|+|+.+.  +....+..=.++..++|+
T Consensus        67 ~ttd-----~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~  105 (442)
T COG1486          67 ATTD-----RREALEGADFVITQIRVGGLEAREKDERIPLKHGL  105 (442)
T ss_pred             EecC-----HHHHhcCCCEEEEEEeeCCcccchhhhccchhhCc
Confidence            6544     346789999999885  566666665556665553

>PLN00198 anthocyanidin reductase; Provisional

Probab=88.55  E-value=2.4  Score=38.21  Aligned_cols=34  Identities=9%  Similarity=-0.091  Sum_probs=26.2

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|.| +|.+|+.+++.|+..|. ++++++.|
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~   42 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD   42 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence            346788898 77899999999999987 45555433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.55  E-value=0.55  Score=43.48  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|..+|..|++.|.. ++|+|...
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~   51 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQP   51 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCC
Confidence            4689999999999999999999986 78887543

>PRK07236 hypothetical protein; Provisional

Probab=88.54  E-value=0.73  Score=42.56  Aligned_cols=34  Identities=12%  Similarity=-0.197  Sum_probs=29.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            46799999999999999999999986 88888553

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=88.52  E-value=3.1  Score=37.54  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|.+||+|..|..++.-|...|.   .+|.+.|++.                        ..++.+.+.++-. +     
T Consensus         3 ~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~------------------------e~~~~l~~~~g~~-~-----   52 (266)
T COG0345           3 KIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE------------------------EKRAALAAEYGVV-T-----   52 (266)
T ss_pred             eEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH------------------------HHHHHHHHHcCCc-c-----
Confidence            57899999999999999999994   4555544211                        1122455555432 1     


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                        ...+.+.....|+||.|.-+......+.++-
T Consensus        53 --~~~~~~~~~~advv~LavKPq~~~~vl~~l~   83 (266)
T COG0345          53 --TTDNQEAVEEADVVFLAVKPQDLEEVLSKLK   83 (266)
T ss_pred             --cCcHHHHHhhCCEEEEEeChHhHHHHHHHhh
Confidence              2224466788999999998876666666554

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=88.49  E-value=2.2  Score=43.95  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             cceEEEEcCChhHHHH-HHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEI-AKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsev-ak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|+|+|+.|... |+.|...|.. ++..|...     .               .  .. +.|.+.  .+.+  +.+
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~~G~~-V~~sD~~~-----~---------------~--~~-~~L~~~--gi~~--~~g   55 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLDRGYS-VSGSDLSE-----G---------------K--TV-EKLKAK--GARF--FLG   55 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHHCCCe-EEEECCCC-----C---------------h--HH-HHHHHC--CCEE--eCC
Confidence            3568999999999998 9999999987 66666321     0               0  01 224443  3333  222


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .    ..+.+.++|+||.+..-...... -+.+++.|+|++
T Consensus        56 ~----~~~~~~~~d~vV~SpgI~~~~p~-~~~a~~~gi~v~   91 (809)
T PRK14573         56 H----QEEHVPEDAVVVYSSSISKDNVE-YLSAKSRGNRLV   91 (809)
T ss_pred             C----CHHHcCCCCEEEECCCcCCCCHH-HHHHHHCCCcEE
Confidence            2    22456789999977532222222 334677888875

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=88.47  E-value=1.4  Score=40.53  Aligned_cols=93  Identities=10%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|||+|.+|...+..|.+. ++.-..++|.|.=       +            +....++   +.  .+.  ....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e-------s------------~gla~A~---~~--Gi~--~~~~   57 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE-------S------------DGLARAR---RL--GVA--TSAE   57 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh-------h------------HHHHHHH---Hc--CCC--cccC
Confidence            46799999999999988887764 2333334443320       0            0001111   11  111  1111


Q ss_pred             CCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+...- ..-+.+.|+|++|+.+. ........+.+.|+.+|
T Consensus        58 ~ie~LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VI   98 (302)
T PRK08300         58 GIDGLLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAI   98 (302)
T ss_pred             CHHHHHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEE
Confidence            111100 01236799999999775 44555667778888776

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=88.47  E-value=0.62  Score=45.26  Aligned_cols=35  Identities=23%  Similarity=0.148  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .-|+|||.|.+|+.+|..|++.|.+ +.|+|...+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~   41 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLA   41 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCC
Confidence            4589999999999999999999997 8888876553

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=88.44  E-value=1.3  Score=41.41  Aligned_cols=34  Identities=21%  Similarity=0.030  Sum_probs=28.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|.|+|++|..++..+...|+..+...|.
T Consensus       185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~  218 (393)
T TIGR02819       185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDL  218 (393)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            3468899999999999999999999987776553

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		1e-18
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		8e-11
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		1e-09
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		3e-06
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		3e-06
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		4e-06
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		4e-06
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		4e-06
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		2e-05
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-05
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-05
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-05
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-05
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-05
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		2e-05
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-05

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNL
Sbjct: 44  LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNL 102
Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236
           NP V+V  +   +++  E F   FD V  T C+ + ++K+D  C  K+ I  F
Sbjct: 103 NPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-KNSIKFF 154

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G EIAKN+ L+GVKSV L D      ED+++  FL   +DIG  RAK + ++   LN  
Sbjct: 37  LGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLT-EDDIGVPRAKVTVSKLAELNQY 95
Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDF 226
           V V+     VDE+S E++  F  V+ T  +  + ++I+DF
Sbjct: 96  VPVSV----VDELSTEYLKNFKCVVVTETSLTKQLEINDF 131

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 124 LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183
           L  +G EIAKN++L+GVKS+ + D   V   D++T QF    +DIG+ R   + A+   L
Sbjct: 35  LKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLST-QFFLTEKDIGQKRGDVTRAKLAEL 93
Query: 184 NPNVEVTSNETKVDEISEEFVHGFDVVIAT-SCNPNQLIKIDDFCRS 229
           N  V V   ++ +D++++  +  F VV+AT + +    +KI++FC S
Sbjct: 94  NAYVPVNVLDS-LDDVTQ--LSQFQVVVATDTVSLEDKVKINEFCHS 137

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 125 TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184
           T  G EI KN++L G+ S  ++D   V+ ED     FL     IGKNRA+++    Q LN
Sbjct: 41  TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGKNRAEAAMEFLQELN 99
Query: 185 PNVEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDD 225
            +V  +  E   + + +    F   F VV+AT    +  +++ D
Sbjct: 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 125 TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184
           T  G EI KN++L G+ S  ++D   V+ ED     FL     IGKNRA+++    Q LN
Sbjct: 39  TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGKNRAEAAMEFLQELN 97
Query: 185 PNVEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDD 225
            +V  +  E   + + +    F   F VV+AT    +  +++ D
Sbjct: 98  SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 125 TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184
           T  G EI KN++L G+ S  ++D   V+ ED     FL     IGKNRA+++    Q LN
Sbjct: 42  TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGKNRAEAAMEFLQELN 100
Query: 185 PNVEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDD 225
            +V  +  E   + + +    F   F VV+AT    +  +++ D
Sbjct: 101 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 144

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 125 TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184
           T  G EI KN++L G+ S  ++D   V+ ED     FL     IGKNRA+++    Q LN
Sbjct: 39  TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGKNRAEAAMEFLQELN 97
Query: 185 PNVEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDD 225
            +V  +  E   + + +    F   F VV+AT    +  +++ D
Sbjct: 98  SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 125 TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184
           T  G EI KN++L G+ S  ++D   V+ ED     FL     IGKNRA+++    Q LN
Sbjct: 41  TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ-RSSIGKNRAEAAMEFLQELN 99
Query: 185 PNVEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDD 225
            +V  +  E   + + +    F   F VV+AT    +  +++ D
Sbjct: 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 42  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 97
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIA 212
            +     +  PN  V  +  K+ + ++ F   F +++ 
Sbjct: 98  VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVC 135

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 42  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 97
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI 211
            +     +  PN  V  +  K+ + ++ F   F +++
Sbjct: 98  VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 42  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 97
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI 211
            +     +  PN  V  +  K+ + ++ F   F +++
Sbjct: 98  VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 42  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 97
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI 211
            +     +  PN  V  +  K+ + ++ F   F +++
Sbjct: 98  VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 71  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 126
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIA 212
            +     +  PN  V  +  K+ + ++ F   F +++ 
Sbjct: 127 VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVC 164

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 39  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 94
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI 211
            +     +  PN  V  +  K+ + ++ F   F +++
Sbjct: 95  VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 131

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 52  KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 107
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIA 212
            +     +  PN  V  +  K+ + ++ F   F +++ 
Sbjct: 108 VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVC 145

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
           K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+
Sbjct: 413 KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAE 468
Query: 175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLI 221
            +     +  PN  V  +  K+ + ++ F   F +++   C  + +I
Sbjct: 469 VAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV---CGLDSII 512

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	1e-38
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	8e-04
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	6e-32
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	2e-28
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	2e-20
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	3e-13
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	4e-12
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	1e-10
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	6e-05
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	7e-05
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	1e-04
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	2e-04

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  136 bits (343), Expect = 1e-38
 Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +GAEIAKN+IL+GVK + +LD   VT ED   AQFL     +G+NRA++S  RAQNLNP 
Sbjct: 47  LGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNLNPM 105

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           V+V  +   +++  E F   FD V  T C+ + ++K+D  C   S 
Sbjct: 106 VDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSI 151

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 7  NNASTAMELTEDEAELYDRQIRL 29
                  ++E+EA  YDRQIRL
Sbjct: 3  EKEEAGGGISEEEAAQYDRQIRL 25

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  120 bits (303), Expect = 6e-32
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
            G EI KN++L G+ S  ++D   V+ ED     F      IGKNRA+++    Q LN +
Sbjct: 43  TGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGKNRAEAAMEFLQELNSD 101

Query: 187 VEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           V  +  E   + + +    F   F VV+AT    +  +++ D   +   
Sbjct: 102 VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQI 150

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  112 bits (280), Expect = 2e-28
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 112 QSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 171
           Q+  + +     L   G EIAKN++L+GVKS+ + D   V   D++  QF    +DIG+ 
Sbjct: 26  QTSNVLILGLKGL---GVEIAKNVVLAGVKSMTVFDPEPVQLADLS-TQFFLTEKDIGQK 81

Query: 172 RAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSK 230
           R   + A+   LN  V V              +  F VV+AT   +    +KI++FC S 
Sbjct: 82  RGDVTRAKLAELNAYVPVN---VLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSS 138

Query: 231 SK 232
             
Sbjct: 139 GI 140

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 88.7 bits (219), Expect = 2e-20
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 66  RRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGS------QSYKIYVY 119
           +   + +       +  P  +  PR         +         G        + K+++ 
Sbjct: 372 KFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLV 431

Query: 120 STGPLTRVGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
            +G +   G E+ KN  L G+ S     + + D+  + K ++N  QFL   +D+GKN+++
Sbjct: 432 GSGAI---GCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN-RQFLFRPKDVGKNKSE 487

Query: 175 SSEARAQNLNP--NVEVTSNETKVDEISE-----EFVHGFDVVIATSCNPNQLIKIDDFC 227
            +      +NP    ++ +   KV   +E      F    D V     N +    +D  C
Sbjct: 488 VAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRC 547

Query: 228 RS 229
             
Sbjct: 548 VF 549

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
           G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+ +     +  PN 
Sbjct: 52  GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAEVAAEFLNDRVPNC 110

Query: 188 EVTSNETKVDEISEEFVHGFDVVI 211
            V  +  K+ + ++ F   F +++
Sbjct: 111 NVVPHFNKIQDFNDTFYRQFHIIV 134

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 7/158 (4%)

Query: 54  WNPKRGQNQRQDRRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQS 113
            + ++  +            +   +     ++     P  +     +  +L         
Sbjct: 355 ASGRQTVDAALAAAQTNAAADWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTC-- 412

Query: 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173
            K+ V   G L   G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A
Sbjct: 413 -KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKA 467

Query: 174 KSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI 211
           + +     +  PN  V  +  K+ + ++ F   F +++
Sbjct: 468 EVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 505

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 60.1 bits (145), Expect = 1e-10
 Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
           G E+ KN++L+G   + L+D   +   ++N  QFL   + +G+++A+ ++       P  
Sbjct: 29  GCELLKNLVLTGFSHIDLIDLDTIDVSNLNR-QFLFQKKHVGRSKAQVAKESVLQFYPKA 87

Query: 188 EVTSNETKV--DEISEEFVHGFDVVI 211
            + +    +   + + EF   F +V+
Sbjct: 88  NIVAYHDSIMNPDYNVEFFRQFILVM 113

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLAPHEDIGKNRAKSSEARAQNLNPN 186
           G  +++ +I  GV+ +  +D+G V     N   Q L   ED GK +A+ + A  + + P 
Sbjct: 339 GCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL 396

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKI 223
           ++ T  +  +  I     H      A   + ++L  +
Sbjct: 397 MDATGVKLSIPMIG----HKLVNEEAQHKDFDRLRAL 429

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Length = 353

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 160 QFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVI 211
           Q L   +D+GKN+ +  +      N  + V+     +++ +    V   D+ +
Sbjct: 161 QVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 213

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 166 EDIGKNRAKSSEARAQNLNPNVEVTSNETKVD-EISEEFVHGFDVVI 211
             +G+ + +S+      +NP++ +T     +D       +   D+V+
Sbjct: 80  ATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVL 126

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 166 EDIGKNRAKSSEARAQNLNPNVEVTSNETKVD-EISEEFVHGFDVVI 211
           EDI + +++ S+ R   LNP++++T+ + ++  E  ++ V   DVV+
Sbjct: 77  EDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVL 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	99.97
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	99.97
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	99.97
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	99.97
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	99.97
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	99.96
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.96
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	99.96
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.96
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	99.96
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.95
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.95
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	99.94
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.99
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.93
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.81
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.71
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.69
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.6
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.6
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.55
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.47
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.44
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.41
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.4
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.36
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.32
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.16
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.15
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.07
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.97
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.95
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.92
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.91
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.91
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.89
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.83
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.75
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.72
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.72
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.7
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.66
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.64
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.63
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.6
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.54
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.53
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.48
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.46
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.45
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.44
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.43
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.42
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.36
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.36
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.36
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.36
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.34
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.33
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.31
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.31
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.31
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.29
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.28
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.27
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.25
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.25
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.25
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.24
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.23
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.23
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.2
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.2
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.19
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.17
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.13
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.13
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.1
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.09
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.09
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.06
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.04
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.02
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.0
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.99
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.98
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.98
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.98
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.96
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.95
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.93
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.92
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.91
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.9
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.88
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.88
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.85
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.82
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.82
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.81
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.8
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.8
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.79
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.78
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.78
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.76
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.74
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.73
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.73
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.72
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.69
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.69
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.69
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.65
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.64
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.64
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.61
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.61
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.58
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.57
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.56
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.55
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.55
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.52
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.48
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.47
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.43
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.41
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.41
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.4
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.4
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.38
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.37
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	95.36
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.36
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.35
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.34
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.33
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.31
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.31
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.3
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.29
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.28
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.28
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.26
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.25
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.25
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.24
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.23
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	95.21
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.2
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.19
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.17
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.14
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.13
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.11
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.1
1lnq_A	336	MTHK channels, potassium channel related protein;	95.09
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.07
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.05
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.03
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.02
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.99
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.99
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.98
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.95
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	94.95
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	94.92
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.87
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	94.86
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.85
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.85
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.84
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.83
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.82
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.8
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	94.77
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.76
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.75
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.74
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	94.74
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.73
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	94.7
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	94.67
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.66
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	94.66
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.65
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.63
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.62
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.62
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.61
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	94.58
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.58
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.58
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.57
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.56
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.55
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.55
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	94.52
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.5
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	94.48
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.45
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.44
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.43
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.43
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.42
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.41
4f6c_A	427	AUSA reductase domain protein; thioester reductase	94.4
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	94.36
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.35
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.35
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.34
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.32
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.32
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.31
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.3
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	94.27
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	94.25
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	94.25
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.23
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.22
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	94.19
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.15
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	94.15
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.15
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	94.13
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.13
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.12
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.12
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.11
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.11
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.1
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.07
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.06
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.06
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.06
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.05
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.02
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	94.02
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	94.01
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	94.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	93.99
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.98
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	93.96
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	93.96
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.96
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.95
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.93
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.93
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.92
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	93.92
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	93.91
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.89
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	93.89
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.88
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.86
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.86
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.84
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.84
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.84
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.84
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.82
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.82
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	93.82
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.76
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	93.74
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	93.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.69
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.69
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	93.66
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	93.65
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.63
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.63
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	93.6
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.58
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.57
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.57
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.56
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.55
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.55
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	93.54
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.53
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	93.53
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.52
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.52
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	93.51
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.5
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.49
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.49
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.49
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.47
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	93.46
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	93.46
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.45
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.44
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	93.44
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.43
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.43
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.42
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	93.41
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.41
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.41
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.37
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.37
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	93.35
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	93.35
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.33
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.33
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.32
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.3
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	93.27
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.27
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.23
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.23
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.23
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	93.22
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	93.21
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.2
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.2
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.19
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	93.18
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.18
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.17
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.17
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.17
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.17
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	93.15
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.15
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.14
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	93.12
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	93.11
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	93.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.09
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	93.09
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.09
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.08
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.07
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	93.06
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.06
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.06
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	93.01
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.99
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	92.95
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	92.95
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	92.95
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	92.94
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.94
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.93
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	92.92
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.92
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	92.92
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	92.91
1xq1_A	266	Putative tropinone reducatse; structural genomics,	92.88
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	92.88
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	92.88
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	92.87
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.86
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	92.85
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.84
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.83
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	92.82
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.82
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	92.82
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	92.81
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.81
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	92.8
1ydw_A	362	AX110P-like protein; structural genomics, protein	92.79
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	92.78
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	92.77
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	92.76
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.75
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	92.74
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	92.74
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	92.73
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	92.7
2duw_A	145	Putative COA-binding protein; ligand binding prote	92.69
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	92.68
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	92.67
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.66
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	92.65
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	92.63
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	92.62
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	92.62
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	92.61
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	92.61
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	92.6
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.58
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.58
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.57
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	92.57
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.55
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	92.53
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	92.52
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.51
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.51
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	92.51
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.5
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.5
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	92.49
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.44
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	92.44
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	92.43
3dme_A	369	Conserved exported protein; structural genomics, P	92.43
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	92.43
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	92.39
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.37
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.37
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.36
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.36
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.35
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.33
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	92.33
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	92.32
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	92.31
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.29
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	92.28
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.28
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	92.27
3cxt_A	291	Dehydrogenase with different specificities; rossma	92.26
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.26
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.26
1spx_A	278	Short-chain reductase family member (5L265); paral	92.23
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.23
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	92.23
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.21
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.21
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.2
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	92.19
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	92.17
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	92.14
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	92.14
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.13
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	92.13
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	92.11
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.09
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	92.09
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	92.09
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.09
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.07
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	92.07
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	92.06
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	92.06
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.03
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	92.02
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.0
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	92.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	91.99
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	91.99
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	91.97
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	91.97
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	91.96
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	91.96
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	91.92
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	91.92
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	91.9
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	91.89
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	91.88
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	91.87
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	91.82
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	91.8
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	91.76
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	91.76
4h3v_A	390	Oxidoreductase domain protein; structural genomics	91.74
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	91.74
3rih_A	293	Short chain dehydrogenase or reductase; structural	91.72
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	91.68
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.67
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.66
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	91.65
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.65
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	91.64
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	91.64
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.64
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.62
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.62
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.62
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	91.6
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	91.54
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	91.54
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	91.51
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	91.48
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.48
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	91.47
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	91.46
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	91.42
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	91.39
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	91.39
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	91.39
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.38
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	91.38
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	91.37

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=1.6e-33  Score=258.03  Aligned_cols=138  Identities=36%  Similarity=0.522  Sum_probs=131.2

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS  175 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea  175 (236)
                      ..+|+||+++||.++  +++.++|+||||||+|+++|++|+++|||+|+|+|+|.|+.+|| +|||++..+|||++||++
T Consensus        16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL-~rq~~~~~~diG~~Ka~~   94 (346)
T 1y8q_A           16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDP-GAQFLIRTGSVGRNRAEA   94 (346)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCG-GGCTTSCSSCTTSBHHHH
T ss_pred             HHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhC-CCCCccccccCcCCHHHH
Confidence            468999999999887  56778999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++|+++||+++|+++...+++...+++++||+||+|+|+..++..|+++|++++||+|.
T Consensus        95 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~  155 (346)
T 1y8q_A           95 SLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFT  155 (346)
T ss_dssp             HHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999887766788999999999999999999999999999999983

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=99.97  E-value=4.9e-32  Score=237.67  Aligned_cols=138  Identities=20%  Similarity=0.191  Sum_probs=129.4

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+++  ||.++  +++.++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|| +||++++.+|||++|+
T Consensus         6 ~~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL-~Rq~l~~~~diG~~Ka   84 (251)
T 1zud_1            6 FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNL-QRQILFTTEDIDRPKS   84 (251)
T ss_dssp             HHHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGT-TTCTTCCGGGTTSBHH
T ss_pred             HHHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccC-CCCccCChhhCCCHHH
Confidence            4689999999  99876  56778999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||.++|+.+...+++.+ .++++++|+||+|+|+..++..|+++|++.++|+|.
T Consensus        85 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~  148 (251)
T 1zud_1           85 QVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLIT  148 (251)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999998887654 567889999999999999999999999999999973

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=99.97  E-value=3.2e-31  Score=238.08  Aligned_cols=136  Identities=15%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             ccchhhh--hcccC-cc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          99 VTLTTLH--TNWAG-SQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        99 ~rydrq~--~l~g~-~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      .-|+||+  +.||. ++  +++.++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|| +||| |+.+|+|++|+
T Consensus        14 ~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL-~Rq~-~~~~diG~~Ka   91 (292)
T 3h8v_A           14 LVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRLF-FQPHQAGLSKV   91 (292)
T ss_dssp             ------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC--------------CCTTSBHH
T ss_pred             CCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhc-cccc-CChhhcCchHH
Confidence            5699997  55886 55  56788999999999999999999999999999999999999999 9995 68899999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCc-ch-hhhc-----------CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDE-IS-EEFV-----------HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~-~~-~~~l-----------~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||.++|+.+...+++ .+ .+++           ++||+||+|+||..+|..||++|+++++|+|+
T Consensus        92 ~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~  167 (292)
T 3h8v_A           92 QAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWME  167 (292)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEE
Confidence            9999999999999999999999875 33 3343           68999999999999999999999999999973

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=99.97  E-value=3.7e-32  Score=261.51  Aligned_cols=137  Identities=25%  Similarity=0.325  Sum_probs=129.0

Q ss_pred             ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587          99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS  176 (236)
Q Consensus        99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~  176 (236)
                      .||+||+++||.++  +++.++|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||+++
T Consensus        13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL-~RQ~l~~~~dvG~~Ka~~a   91 (531)
T 1tt5_A           13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDA-GNNFFLQRSSIGKNRAEAA   91 (531)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHH-HHCTTCCGGGBTSBHHHHH
T ss_pred             HHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhc-ccCccCChhhcCcHHHHHH
Confidence            58999999999887  56778999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHhhCCCceEEEEecCCCc---chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         177 EARAQNLNPNVEVTSNETKVDE---ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       177 ~~~L~~inp~v~I~~~~~~l~~---~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++|+++||+++|+.+...+++   ...+++++||+||+|+|+..++..|+++|+.++||+|.
T Consensus        92 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~  154 (531)
T 1tt5_A           92 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLI  154 (531)
T ss_dssp             HHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999887764   24678999999999999999999999999999999983

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=99.97  E-value=5.7e-31  Score=230.51  Aligned_cols=138  Identities=15%  Similarity=0.199  Sum_probs=129.0

Q ss_pred             cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+++  ||.++  +++.++|+|||+||+|++++++|+++|+++|+|+|.|.|+++|| +||+++..+|||++|+
T Consensus         9 ~~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl-~Rq~l~~~~diG~~Ka   87 (249)
T 1jw9_B            9 MLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL-QRQTLHSDATVGQPKV   87 (249)
T ss_dssp             HHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGG-GTCTTCCGGGTTSBHH
T ss_pred             HHHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccC-CcccccChhhcCcHHH
Confidence            3689999999  99876  46778999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|.++||.++++.+...+++.+ .++++++|+||+|+|+.+++..++++|++.++|+|.
T Consensus        88 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~  151 (249)
T 1jw9_B           88 ESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVS  151 (249)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999988887654 567899999999999999999999999999999973

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=99.97  E-value=4.2e-30  Score=235.84  Aligned_cols=140  Identities=14%  Similarity=0.233  Sum_probs=127.9

Q ss_pred             cccccchhhhh---cccCcc-----ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCc
Q psy9587          96 AHTVTLTTLHT---NWAGSQ-----SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED  167 (236)
Q Consensus        96 ~~~~rydrq~~---l~g~~~-----~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~d  167 (236)
                      ....||+||+.   +|+..+     +++.++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+|| +||++++.+|
T Consensus        90 ~~~~rY~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL-~Rq~l~~~~d  168 (353)
T 3h5n_A           90 TENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNL-TRQVLFSEDD  168 (353)
T ss_dssp             CTTSTTHHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGG-GTCTTCCGGG
T ss_pred             HHHHHhhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCccccc-ccccCCChHH
Confidence            35689999975   677532     56788999999999999999999999999999999999999999 9999999999


Q ss_pred             CCChHHHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHH-HHHHHHHHHHHcCCcEEC
Q psy9587         168 IGKNRAKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPN-QLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       168 IGk~Kaea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~-~r~~In~~c~~~~ip~I~  236 (236)
                      +|++|+++++++|+++||.++|+.+...+++.+ .+.+++||+||+|+|+.. ++..|+++|+++++|+|.
T Consensus       169 iG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~  239 (353)
T 3h5n_A          169 VGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPYIN  239 (353)
T ss_dssp             TTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGGSCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred             CCChHHHHHHHHHHHHCCCCeEEEeecccCchhhhhHhccCCEEEEecCChHHHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999999999999987755 333899999999999999 999999999999999983

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=99.96  E-value=9.8e-30  Score=248.54  Aligned_cols=132  Identities=16%  Similarity=0.259  Sum_probs=122.3

Q ss_pred             hhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHH
Q psy9587         104 LHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQ  181 (236)
Q Consensus       104 q~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~  181 (236)
                      |+++||.++  +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+|+.+|||++||++++++|+
T Consensus         3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNL-nRQflf~~~dVGk~KAeaaa~~L~   81 (640)
T 1y8q_B            3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNL-NRQFLFQKKHVGRSKAQVAKESVL   81 (640)
T ss_dssp             ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhc-CCCcCCChhHcChHHHHHHHHHHH
Confidence            889999887  46778999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             hhCCCceEEEEecCCCcch--hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         182 NLNPNVEVTSNETKVDEIS--EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       182 ~inp~v~I~~~~~~l~~~~--~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++||.++|+++...+++.+  .+++++||+||+|+|+..+|..|+++|+.+++|+|.
T Consensus        82 ~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~  138 (640)
T 1y8q_B           82 QFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIE  138 (640)
T ss_dssp             TTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999887543  578999999999999999999999999999999983

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.6e-30  Score=261.21  Aligned_cols=138  Identities=20%  Similarity=0.234  Sum_probs=130.1

Q ss_pred             cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCC-----ceEEEeeCCcccccCCCCCccccCCCcCCC
Q psy9587          98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGK  170 (236)
Q Consensus        98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GV-----g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk  170 (236)
                      ..||+||+++||.++  +++.++|+||||||+||+++++|+++||     |+|+|+|.|.|+.+|| +|||+|+.+|||+
T Consensus       405 ~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNL-nRQ~lf~~~dvG~  483 (1015)
T 3cmm_A          405 NSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNL-NRQFLFRPKDVGK  483 (1015)
T ss_dssp             SSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGT-TTCTTCCGGGTTS
T ss_pred             hhhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccc-cccccCChhhCCC
Confidence            469999999999887  5677999999999999999999999999     9999999999999999 9999999999999


Q ss_pred             hHHHHHHHHHHhhCCCc--eEEEEecCCCcch-----hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         171 NRAKSSEARAQNLNPNV--EVTSNETKVDEIS-----EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       171 ~Kaea~~~~L~~inp~v--~I~~~~~~l~~~~-----~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +||++++++++++||.+  +|+++...+++.+     .++++++|+||+|+||..+|.+++++|+.+++|+|.
T Consensus       484 ~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~  556 (1015)
T 3cmm_A          484 NKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLE  556 (1015)
T ss_dssp             BHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence            99999999999999999  9999999987644     467889999999999999999999999999999983

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=99.96  E-value=2.9e-29  Score=236.14  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=115.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||++++++|+++||.++|+.+..
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL-~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~  117 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  117 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGT-TTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEES
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhcc-CCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEec
Confidence            678999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHc------------CCcEEC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK------------SKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~------------~ip~I~  236 (236)
                      .+++.+.+++++||+||+|+|+.++|.+||+.|+..            ++|+|.
T Consensus       118 ~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~  171 (434)
T 1tt5_B          118 KIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID  171 (434)
T ss_dssp             CGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEE
T ss_pred             ccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEE
Confidence            888777789999999999999999999999999984            999973

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-29  Score=258.00  Aligned_cols=136  Identities=27%  Similarity=0.371  Sum_probs=128.4

Q ss_pred             ccccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587          97 HTVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK  174 (236)
Q Consensus        97 ~~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae  174 (236)
                      +..+|+||+++||.++  +++.++|+||||||+|+++|++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||+
T Consensus         6 d~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL-~RQ~l~~~~dvG~~Ka~   84 (1015)
T 3cmm_A            6 DESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADL-STQFFLTEKDIGQKRGD   84 (1015)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGG-GTCTTCCGGGTTSBHHH
T ss_pred             hhHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhh-ccccccChhhcChHHHH
Confidence            3468999999999987  56778999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587         175 SSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       175 a~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++++|+++||+++|+++...+++   +++++||+||+|.| +..++..|+++|++++||+|+
T Consensus        85 a~~~~L~~lNP~v~v~~~~~~l~~---~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~  144 (1015)
T 3cmm_A           85 VTRAKLAELNAYVPVNVLDSLDDV---TQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFIS  144 (1015)
T ss_dssp             HHHHHHTTSCTTSCEEECCCCCCS---TTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHCCCCeEEEecCCCCH---HHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999888754   58899999999999 999999999999999999984

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=99.96  E-value=5.7e-29  Score=227.49  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=118.0

Q ss_pred             hcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh
Q psy9587         106 TNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL  183 (236)
Q Consensus       106 ~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i  183 (236)
                      |+|+..+  +++.++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|| +||++++.+|+|++|+++++++|+++
T Consensus        22 Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL-~RQ~l~~~~diG~~Ka~aaa~~L~~i  100 (340)
T 3rui_A           22 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNP-VRQALYNFEDCGKPKAELAAASLKRI  100 (340)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTST-TTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred             hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccc-cccccCChhhcChHHHHHHHHHHHHh
Confidence            6666654  56889999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCCceEEEEecCC---------------Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         184 NPNVEVTSNETKV---------------DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       184 np~v~I~~~~~~l---------------~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ||.++++.+...+               +..+ .+++++||+||+|+|+.++|..++++|+.+++|+|
T Consensus       101 nP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI  168 (340)
T 3rui_A          101 FPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVI  168 (340)
T ss_dssp             CTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEE
Confidence            9999999988654               1112 56789999999999999999999999999999997

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.95  E-value=2.1e-28  Score=237.18  Aligned_cols=136  Identities=15%  Similarity=0.153  Sum_probs=122.3

Q ss_pred             ccchhhhhc-------ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC
Q psy9587          99 VTLTTLHTN-------WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG  169 (236)
Q Consensus        99 ~rydrq~~l-------~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG  169 (236)
                      .+|+||+++       |+..+  +++.++|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +||++++.+|||
T Consensus       301 a~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL-~RQ~L~~~~DvG  379 (598)
T 3vh1_A          301 ADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNP-VRQALYNFEDCG  379 (598)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTST-TTSTTCCSTTCS
T ss_pred             HHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCccccccc-ccccccchhhcC
Confidence            467777775       44443  57789999999999999999999999999999999999999999 999999999999


Q ss_pred             ChHHHHHHHHHHhhCCCceEEEEecCC---------------Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy9587         170 KNRAKSSEARAQNLNPNVEVTSNETKV---------------DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       170 k~Kaea~~~~L~~inp~v~I~~~~~~l---------------~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip  233 (236)
                      ++||++++++|+++||.++|+.+...+               +..+ .++++++|+||+|+|+.++|..++++|+.+++|
T Consensus       380 ~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~p  459 (598)
T 3vh1_A          380 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKT  459 (598)
T ss_dssp             SBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCE
T ss_pred             cHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999998764               1122 567889999999999999999999999999999


Q ss_pred             EE
Q psy9587         234 SL  235 (236)
Q Consensus       234 ~I  235 (236)
                      +|
T Consensus       460 lI  461 (598)
T 3vh1_A          460 VI  461 (598)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.95  E-value=7.2e-28  Score=233.78  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=118.8

Q ss_pred             hcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh
Q psy9587         106 TNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL  183 (236)
Q Consensus       106 ~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i  183 (236)
                      |+|+..+  +++.++|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +||++++.+|+|++||++++++|+++
T Consensus       314 Rllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL-~RQ~L~~~~dIG~~KAeaaa~~L~~i  392 (615)
T 4gsl_A          314 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNP-VRQALYNFEDCGKPKAELAAASLKRI  392 (615)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGG-GTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred             hhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCc-ccccCCChhhcChHHHHHHHHHHHhh
Confidence            6777766  67889999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCCceEEEEecCC---------------Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         184 NPNVEVTSNETKV---------------DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       184 np~v~I~~~~~~l---------------~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ||.++|+.+...+               +..+ .++++++|+||+|+|+.++|..++++|+.+++|+|
T Consensus       393 NP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI  460 (615)
T 4gsl_A          393 FPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVI  460 (615)
T ss_dssp             CTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEE
T ss_pred             CCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEE
Confidence            9999999998654               1122 56789999999999999999999999999999997

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=99.94  E-value=2.3e-27  Score=236.66  Aligned_cols=120  Identities=19%  Similarity=0.274  Sum_probs=115.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||++++++|+++||.++|+.+..
T Consensus       410 ~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl-~rq~~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~~~  488 (805)
T 2nvu_B          410 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  488 (805)
T ss_dssp             HTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeeccccc-ccccccchhhcCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            678999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHc------------CCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK------------SKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~------------~ip~I  235 (236)
                      .+++.+.+++++||+||+|+|+..+|.+||+.|+..            +||+|
T Consensus       489 ~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i  541 (805)
T 2nvu_B          489 KIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLI  541 (805)
T ss_dssp             CGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEE
T ss_pred             cccccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEE
Confidence            998877789999999999999999999999999984            99997

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=4.4e-05  Score=56.49  Aligned_cols=90  Identities=16%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|++|..+++.|...|..+++++|.+.-                    |.+.+.      .+.+.  .....+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~--------------------~~~~~~------~~~~~--~~~~d~   57 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA--------------------ALAVLN------RMGVA--TKQVDA   57 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH--------------------HHHHHH------TTTCE--EEECCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH--------------------HHHHHH------hCCCc--EEEecC
Confidence            57899999999999999999999777888884321                    122111      22333  333344


Q ss_pred             Ccch--hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEIS--EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~~--~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+..  .+.++++|+||.|+.. .....+.+.|.+.+++++
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~~~~~g~~~~   97 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPF-FLTPIIAKAAKAAGAHYF   97 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHcCCCEEEECCCc-hhhHHHHHHHHHhCCCEE
Confidence            3321  4567899999999853 445677888888888875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.99  E-value=1.2e-05  Score=69.15  Aligned_cols=93  Identities=9%  Similarity=0.076  Sum_probs=68.5

Q ss_pred             cccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         112 QSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       112 ~~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .+++..+|+|||+|.+|...++.|..+|. ++++++++.-+  .+                    . .+.+. .  .++.
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~--~l--------------------~-~l~~~-~--~i~~   79 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSA--EI--------------------N-EWEAK-G--QLRV   79 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCH--HH--------------------H-HHHHT-T--SCEE
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCH--HH--------------------H-HHHHc-C--CcEE
Confidence            35678899999999999999999999997 59999864211  01                    1 11111 2  2334


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ....+.   .+.+.++|+||.|+++......+.+.|+ .+||+-
T Consensus        80 i~~~~~---~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VN  119 (223)
T 3dfz_A           80 KRKKVG---EEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVN  119 (223)
T ss_dssp             ECSCCC---GGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEE
T ss_pred             EECCCC---HhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence            444443   3567899999999999999999999998 999873

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.93  E-value=2.6e-05  Score=69.06  Aligned_cols=60  Identities=18%  Similarity=0.152  Sum_probs=47.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .++.++|+|+|+||+|..++..|+..|+++|++++.+.                    .|++.+++.+....+.+++...
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~--------------------~~a~~la~~~~~~~~~~~i~~~  183 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT--------------------SRAQALADVINNAVGREAVVGV  183 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH--------------------HHHHHHHHHHHHHHTSCCEEEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH--------------------HHHHHHHHHHHhhcCCceEEEc
Confidence            35678999999999999999999999999999986431                    3677777777776666555543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.81  E-value=0.00021  Score=56.52  Aligned_cols=92  Identities=20%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ...+|+|+|+|.+|..+++.|...|. +++++|.+.-....+ ....                        ...  ....
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~-~~~~------------------------g~~--~~~~   69 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRL-NSEF------------------------SGF--TVVG   69 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGS-CTTC------------------------CSE--EEES
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH-HhcC------------------------CCc--EEEe
Confidence            44679999999999999999999997 699998764333333 1010                        011  1111


Q ss_pred             CCCcc-h--hhhcCCCcEEEEcCCCHHHHHHHHHHHHH-cCCcE
Q psy9587         195 KVDEI-S--EEFVHGFDVVIATSCNPNQLIKIDDFCRS-KSKIS  234 (236)
Q Consensus       195 ~l~~~-~--~~~l~~~DlVI~~~d~~~~r~~In~~c~~-~~ip~  234 (236)
                      ..... .  ...+.++|+||.|+.+......+...++. .+...
T Consensus        70 d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~  113 (155)
T 2g1u_A           70 DAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVEN  113 (155)
T ss_dssp             CTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSE
T ss_pred             cCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence            11110 0  11246789999999988888888888887 55443

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.71  E-value=9.8e-05  Score=65.30  Aligned_cols=110  Identities=12%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc--cCCCCCccccCCCcCCChHHHHHHHHHHhh-CC----
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK--EDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NP----  185 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~--sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np----  185 (236)
                      +++..+|+|||+|.+|...++.|...|.. ++++|++.-+.  ..+  .. +..  +-+. ++.  ....+++ ++    
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~-VtViap~~~~~l~~~~--~~-l~~--~~~~-~~~--~~~~~~~~~~~~~~   80 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCK-LTLVSPDLHKSIIPKF--GK-FIQ--NKDQ-PDY--REDAKRFINPNWDP   80 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCE-EEEEEEEECTTHHHHH--CG-GGC----------------CEEECTTCCT
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCE-EEEEcCCCCcchhHHH--HH-HHh--cccc-ccc--cchhhccccccccc
Confidence            45778999999999999999999999965 99999765311  011  11 110  0000 000  0000000 00    


Q ss_pred             -CceE-EEEecCCCcchhhhcC------CCcEEEEcCCCHHHHHHHHHHHHHc---CCcE
Q psy9587         186 -NVEV-TSNETKVDEISEEFVH------GFDVVIATSCNPNQLIKIDDFCRSK---SKIS  234 (236)
Q Consensus       186 -~v~I-~~~~~~l~~~~~~~l~------~~DlVI~~~d~~~~r~~In~~c~~~---~ip~  234 (236)
                       .-.+ +.+...+.+   +.+.      ++|+||.|+++......|.+.|++.   ++|+
T Consensus        81 ~~g~i~~~i~~~~~~---~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~V  137 (274)
T 1kyq_A           81 TKNEIYEYIRSDFKD---EYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV  137 (274)
T ss_dssp             TSCCCSEEECSSCCG---GGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred             ccCCeeEEEcCCCCH---HHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEE
Confidence             1123 444444432   3344      8999999999999999999999999   9887

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.69  E-value=0.00015  Score=55.34  Aligned_cols=91  Identities=14%  Similarity=0.068  Sum_probs=56.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +..+|+|+|+|.+|..+++.|...|. +++++|.+.-....+ ...                         ...  ....
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~-~~~-------------------------~~~--~~~~   55 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAY-ASY-------------------------ATH--AVIA   55 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTT-TTT-------------------------CSE--EEEC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHh-------------------------CCE--EEEe
Confidence            34568999999999999999999997 588888653222222 110                         111  1112


Q ss_pred             CCCcc-h-hh-hcCCCcEEEEcCCCH-HHHHHHHHHHHHcCCcE
Q psy9587         195 KVDEI-S-EE-FVHGFDVVIATSCNP-NQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       195 ~l~~~-~-~~-~l~~~DlVI~~~d~~-~~r~~In~~c~~~~ip~  234 (236)
                      +..+. . .+ .+.++|+||.|+.+. .....+...|+..+.+.
T Consensus        56 d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~   99 (144)
T 2hmt_A           56 NATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPN   99 (144)
T ss_dssp             CTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSE
T ss_pred             CCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcCCCe
Confidence            22211 1 11 246789999988764 66667777888777653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.60  E-value=0.00024  Score=63.88  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=33.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+||+|..++..|+..|+.+|+|++.+
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            3567899999999999999999999999999998754

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.60  E-value=0.0004  Score=65.11  Aligned_cols=92  Identities=12%  Similarity=0.041  Sum_probs=68.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++..+|+|||.|.+|...++.|...|. +++++|++.-.                          .+.++...-.++.+
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~--------------------------~~~~l~~~~~i~~~   61 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP--------------------------QFTVWANEGMLTLV   61 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH--------------------------HHHHHHTTTSCEEE
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH--------------------------HHHHHHhcCCEEEE
Confidence            4567889999999999999999999996 59999964211                          01111111134444


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      ...+.   .+.+.++|+||.|+++......+.+.|++++||+
T Consensus        62 ~~~~~---~~~l~~~~lVi~at~~~~~n~~i~~~a~~~~i~v  100 (457)
T 1pjq_A           62 EGPFD---ETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (457)
T ss_dssp             ESSCC---GGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             ECCCC---ccccCCccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence            44443   3456789999999999988899999999999997

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.55  E-value=0.00016  Score=55.91  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|. +++++|.|.-                    +++    .+.+.  .+  .....+.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~--------------------~~~----~~~~~--~~--~~~~gd~   57 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKE--------------------KIE----LLEDE--GF--DAVIADP   57 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHH--------------------HHH----HHHHT--TC--EEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHH--------------------HHH----HHHHC--CC--cEEECCC
Confidence            478999999999999999999998 4888885321                    122    22221  22  2333444


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      ++..   ...+.++|+||.++++......+...+++.+.+.
T Consensus        58 ~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~   98 (141)
T 3llv_A           58 TDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVY   98 (141)
T ss_dssp             TCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCC
T ss_pred             CCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCce
Confidence            3321   1125689999999999888888888888876543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.47  E-value=0.00048  Score=63.42  Aligned_cols=97  Identities=11%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|+|+|++|..+++.|+..|-  ..++++|.+.                    .|++.+++.+....+ .++.....
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~--------------------~~~~~la~~l~~~~~-~~~~~~~~   60 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTL--------------------SKCQEIAQSIKAKGY-GEIDITTV   60 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCH--------------------HHHHHHHHHHHHTTC-CCCEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCH--------------------HHHHHHHHHhhhhcC-CceEEEEe
Confidence            368999999999999999999883  5788877322                    356666666655432 23444444


Q ss_pred             CCCcc-h-hhhcCC--CcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEI-S-EEFVHG--FDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~-~-~~~l~~--~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ++++. . .+.+++  +|+||.|+.... ...+.+.|.+.++.++
T Consensus        61 D~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vv  104 (405)
T 4ina_A           61 DADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYL  104 (405)
T ss_dssp             CTTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEE
T ss_pred             cCCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEE
Confidence            44432 1 345555  899998887543 3567778888888876

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.44  E-value=0.0011  Score=52.13  Aligned_cols=89  Identities=12%  Similarity=0.031  Sum_probs=60.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|.. ++++|.+.-+                   +++.+.+.   ....+  ..+..+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~-V~vid~~~~~-------------------~~~~~~~~---~~~~~--~~i~gd~   58 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQN-VTVISNLPED-------------------DIKQLEQR---LGDNA--DVIPGDS   58 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHH-------------------HHHHHHHH---HCTTC--EEEESCT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCC-EEEEECCChH-------------------HHHHHHHh---hcCCC--eEEEcCC
Confidence            5689999999999999999999964 8888864210                   11111111   11223  3344444


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSK  230 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~  230 (236)
                      ++..   ...+.++|+||.|+++......+...|++.
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           59 NDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence            3322   223788999999999988888888888876

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.00064  Score=61.37  Aligned_cols=88  Identities=11%  Similarity=-0.005  Sum_probs=57.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .-+|+|+|+|.+|..+++.|+..  ..++++|-+.                    .+       +.+..+.+.  ...-+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~--------------------~~-------~~~~~~~~~--~~~~d   64 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNN--------------------EN-------LEKVKEFAT--PLKVD   64 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH--------------------HH-------HHHHTTTSE--EEECC
T ss_pred             ccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCH--------------------HH-------HHHHhccCC--cEEEe
Confidence            34689999999999999999753  4577666321                    11       222223322  22223


Q ss_pred             CCcch--hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..+..  .++++++|+||.|+.+. .-..+.+.|.+.|+.++
T Consensus        65 ~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yv  105 (365)
T 3abi_A           65 ASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMV  105 (365)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEE
T ss_pred             cCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceE
Confidence            33222  55789999999998765 34578899999998875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.36  E-value=0.00059  Score=61.24  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=33.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+||+|..++..|+..|+.+|+|++.+
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3566889999999999999999999999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.32  E-value=0.001  Score=50.37  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=56.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+.-                    +++    .+.+.. .+.  ......
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~--------------------~~~----~~~~~~-~~~--~~~~d~   56 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKD--------------------ICK----KASAEI-DAL--VINGDC   56 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHH--------------------HHH----HHHHHC-SSE--EEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH--------------------HHH----HHHHhc-CcE--EEEcCC
Confidence            468999999999999999999995 5888885321                    111    122111 122  222222


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCC
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~i  232 (236)
                      ....   ...+.++|+||.|+.+......+.+.++..+.
T Consensus        57 ~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~   95 (140)
T 1lss_A           57 TKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGI   95 (140)
T ss_dssp             TSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHcCC
Confidence            2211   12356899999999887777777777877664

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.16  E-value=0.00088  Score=54.02  Aligned_cols=88  Identities=7%  Similarity=-0.034  Sum_probs=56.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+|+|+|+|.+|..+++.|... |. .++++|.|.-                    |++    .+.+.  .+.  ...
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~--------------------~~~----~~~~~--g~~--~~~   88 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREE--------------------AAQ----QHRSE--GRN--VIS   88 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHH--------------------HHH----HHHHT--TCC--EEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHH--------------------HHH----HHHHC--CCC--EEE
Confidence            345789999999999999999998 87 4888885431                    111    12222  222  222


Q ss_pred             cCCCcch--hhh--cCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         194 TKVDEIS--EEF--VHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       194 ~~l~~~~--~~~--l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      .+.++..  .+.  +.++|+||.|+.+......+-..++..+
T Consensus        89 gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           89 GDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             CCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            2222211  222  5689999999988777767767777765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.16  E-value=0.001  Score=51.79  Aligned_cols=85  Identities=14%  Similarity=0.106  Sum_probs=56.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|. .++++|.|.-                    ++    +.+++  ..+.  ....+.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~--------------------~~----~~~~~--~g~~--~i~gd~   58 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRT--------------------RV----DELRE--RGVR--AVLGNA   58 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHH--------------------HH----HHHHH--TTCE--EEESCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHH--------------------HH----HHHHH--cCCC--EEECCC
Confidence            468999999999999999999998 4888885431                    11    12222  1222  333433


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSK  230 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~  230 (236)
                      +...   ..-+.++|+||.|+++......+...+++.
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~   95 (140)
T 3fwz_A           59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAK   95 (140)
T ss_dssp             TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHH
Confidence            3221   123568999999998877666666666664

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.07  E-value=0.0023  Score=53.10  Aligned_cols=88  Identities=9%  Similarity=-0.052  Sum_probs=59.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+|.+|..+++.|...|.. ++++|.|.-                    +++    .+.+.. .+  ..+..+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~-v~vid~~~~--------------------~~~----~l~~~~-~~--~~i~gd~~   53 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG-VVIINKDRE--------------------LCE----EFAKKL-KA--TIIHGDGS   53 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC-EEEEESCHH--------------------HHH----HHHHHS-SS--EEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHH--------------------HHH----HHHHHc-CC--eEEEcCCC
Confidence            478999999999999999999974 888884321                    111    222211 22  33444443


Q ss_pred             cch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHH-cCCc
Q psy9587         198 EIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRS-KSKI  233 (236)
Q Consensus       198 ~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~-~~ip  233 (236)
                      ...   ...+.++|+||.++++......+...+++ ++.+
T Consensus        54 ~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~   93 (218)
T 3l4b_C           54 HKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVK   93 (218)
T ss_dssp             SHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCC
T ss_pred             CHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCC
Confidence            321   23468899999999999888888888886 4544

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.97  E-value=0.0034  Score=59.53  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhC-C--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSG-V--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~G-V--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+|+|||+|+||+.++..|++.+ +  ..|+++|.+... .++                    .+.+     .+++  ..
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-~~~--------------------~~~~-----g~~~--~~   65 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-VDV--------------------AQQY-----GVSF--KL   65 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-CCH--------------------HHHH-----TCEE--EE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh-hhH--------------------Hhhc-----CCce--eE
Confidence            46899999999999999999864 5  589999865432 111                    1111     2333  33


Q ss_pred             cCCCcch-----hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEIS-----EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~-----~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..++..+     ..++++.|+||.+.... ....|.+.|.+.|+-+|
T Consensus        66 ~~Vdadnv~~~l~aLl~~~DvVIN~s~~~-~~l~Im~acleaGv~Yl  111 (480)
T 2ph5_A           66 QQITPQNYLEVIGSTLEENDFLIDVSIGI-SSLALIILCNQKGALYI  111 (480)
T ss_dssp             CCCCTTTHHHHTGGGCCTTCEEEECCSSS-CHHHHHHHHHHHTCEEE
T ss_pred             EeccchhHHHHHHHHhcCCCEEEECCccc-cCHHHHHHHHHcCCCEE
Confidence            3444332     24666679999877554 44678899999998775

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.95  E-value=0.0021  Score=56.44  Aligned_cols=37  Identities=3%  Similarity=-0.114  Sum_probs=33.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++++|+|+||+|..++..|+..|+.+|++++.+
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4567899999999999999999999999999998743

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.92  E-value=0.002  Score=58.11  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc-eEEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV-EVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v-~I~~~  192 (236)
                      +..+|.|+|+|.+|+.++..|+..|+ ++|+|+|-+                    ..|++..+..|....|.. .+...
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~--------------------~~k~~g~a~DL~~~~~~~~~~~i~   67 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF--------------------KDKTKGDAIDLEDALPFTSPKKIY   67 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC--------------------HHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC--------------------hHHHHHHHhhHhhhhhhcCCcEEE
Confidence            44678999999999999999999998 589998832                    235666666677655421 22222


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      ..     +.+-++++|+||.+...
T Consensus        68 ~~-----~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A           68 SA-----EYSDAKDADLVVITAGA   86 (326)
T ss_dssp             EC-----CGGGGTTCSEEEECCCC
T ss_pred             EC-----cHHHhcCCCEEEECCCC
Confidence            22     23457899999988653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.92  E-value=0.0035  Score=52.06  Aligned_cols=91  Identities=8%  Similarity=-0.035  Sum_probs=57.8

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE-EE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV-TS  191 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I-~~  191 (236)
                      ++..+|+|.|+ |++|.++++.|+..|. ++++++.+.-                    +.+.    +...    .+ +.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~--------------------~~~~----~~~~----~~~~~   69 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEE--------------------QGPE----LRER----GASDI   69 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGG--------------------GHHH----HHHT----TCSEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChH--------------------HHHH----HHhC----CCceE
Confidence            46678999997 8999999999999997 5777764321                    1111    1111    23 44


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC-------------CHHHHHHHHHHHHHcCCc
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC-------------NPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d-------------~~~~r~~In~~c~~~~ip  233 (236)
                      +..++++.-.+.+.++|+||.+..             |...-..+.+.|++.+.+
T Consensus        70 ~~~Dl~~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  124 (236)
T 3e8x_A           70 VVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIK  124 (236)
T ss_dssp             EECCTTSCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCC
T ss_pred             EEcccHHHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCC
Confidence            555555323566789999998864             333445667777777653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.91  E-value=0.0026  Score=56.02  Aligned_cols=37  Identities=8%  Similarity=-0.095  Sum_probs=32.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+||+|..++..|+..|+.+|++++.+
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            3567889999999999999999999999999998743

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.91  E-value=0.0039  Score=56.10  Aligned_cols=75  Identities=19%  Similarity=0.174  Sum_probs=51.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVT  190 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~  190 (236)
                      +..+|.|+|+|.+|+.++..|+..|.++++|+|-+.                    .|++..+..|...++    ..++.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~--------------------~~~~g~~~dl~~~~~~~~~~~~v~   65 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE--------------------GTPQGKGLDIAESSPVDGFDAKFT   65 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS--------------------SHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc--------------------hhHHHHHHHHhchhhhcCCCCEEE
Confidence            446789999999999999999999987899988432                    133333445554432    34454


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ....      .+-++++|+||.+..
T Consensus        66 ~t~d------~~a~~~aDiVIiaag   84 (324)
T 3gvi_A           66 GAND------YAAIEGADVVIVTAG   84 (324)
T ss_dssp             EESS------GGGGTTCSEEEECCS
T ss_pred             EeCC------HHHHCCCCEEEEccC
Confidence            4221      246789999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.89  E-value=0.0011  Score=51.69  Aligned_cols=33  Identities=15%  Similarity=-0.063  Sum_probs=29.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|+|+|+|++|..+++.|...|+. ++++|.+
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            46899999999999999999999988 9998843

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.83  E-value=0.0042  Score=55.90  Aligned_cols=75  Identities=16%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc--eEEEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV--EVTSN  192 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v--~I~~~  192 (236)
                      ..+|.|+|+|.+|+.++..|+..|. ++++++|-+                    ..|++..+..|....|..  .+...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~--------------------~~k~~g~a~DL~~~~~~~~~~v~i~   64 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN--------------------KEKAMGDVMDLNHGKAFAPQPVKTS   64 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC--------------------HHHHHHHHHHHHHTGGGSSSCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc--------------------hHHHHHHHHHHHhccccccCCeEEE
Confidence            3578999999999999999999998 589998832                    235666666666654432  22222


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..     +.+-++++|+||.+..
T Consensus        65 ~~-----~~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A           65 YG-----TYEDCKDADIVCICAG   82 (326)
T ss_dssp             EE-----CGGGGTTCSEEEECCS
T ss_pred             eC-----cHHHhCCCCEEEEecc
Confidence            22     2245789999998864

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.75  E-value=0.009  Score=53.07  Aligned_cols=72  Identities=14%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~~~  192 (236)
                      +|.|||+|.||+.+|..|+..|. ++|.|+|-                    ...|++..+.-|....    ...++...
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di--------------------~~~~~~G~a~DL~h~~~~~~~~~~i~~~   61 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI--------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGG   61 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS--------------------SHHHHHHHHHHHHHHHGGGTCCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC--------------------CCCcchhhhhhhhcccccCCCCCeEecC
Confidence            57899999999999999998886 78999882                    1235666666676633    23344332


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .      +.+-++++|+||.+..
T Consensus        62 ~------d~~~~~~aDvVvitAG   78 (294)
T 2x0j_A           62 A------DYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             S------CGGGGTTCSEEEECCC
T ss_pred             C------CHHHhCCCCEEEEecC
Confidence            1      1245789999998875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.72  E-value=0.0019  Score=54.20  Aligned_cols=86  Identities=15%  Similarity=0.020  Sum_probs=61.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|.  ++++|.|.-                    ++    +.+.   +.+  ..+..+.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~--------------------~~----~~~~---~~~--~~i~gd~   58 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV--FVLAEDENV--------------------RK----KVLR---SGA--NFVHGDP   58 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGG--------------------HH----HHHH---TTC--EEEESCT
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe--EEEEECCHH--------------------HH----HHHh---cCC--eEEEcCC
Confidence            468999999999999999999887  888885421                    11    1222   233  3444444


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip  233 (236)
                      ++..   ..-++++|.||.++++......+...|++.+..
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~   98 (234)
T 2aef_A           59 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES   98 (234)
T ss_dssp             TCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCCC
Confidence            4322   223788999999999988888888889887753

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.72  E-value=0.0095  Score=52.91  Aligned_cols=72  Identities=15%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh----hCCCceEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN----LNPNVEVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~----inp~v~I~~~~  193 (236)
                      +|.|+|+|.+|+.++..|+..|+++|+|+|-+.                    .|++..+..|..    ....+++....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~--------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   60 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP--------------------GKPQGEALDLAHAAAELGVDIRISGSN   60 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST--------------------THHHHHHHHHHHHHHHHTCCCCEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh--------------------hhHHHHHHHHHHhhhhcCCCeEEEECC
Confidence            478999999999999999999996699999541                    122333334433    34455666532


Q ss_pred             cCCCcchhhhcCCCcEEEEcCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .      .+-++++|+||.+..
T Consensus        61 d------~~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B           61 S------YEDMRGSDIVLVTAG   76 (308)
T ss_dssp             C------GGGGTTCSEEEECCS
T ss_pred             C------HHHhCCCCEEEEeCC
Confidence            2      135789999999853

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.70  E-value=0.0086  Score=53.24  Aligned_cols=73  Identities=14%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVT  190 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~  190 (236)
                      ..+|.|||+|.+|+.++..|+..|. ++|.++|-+.                    .|++..+..|....+    .+++.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~--------------------~~~~~~~~dl~~~~~~~~~~~~i~   65 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE--------------------SKAIGDAMDFNHGKVFAPKPVDIW   65 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH--------------------HHHHHHHHHHHHHTTSSSSCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc--------------------chHHHHHhhHHHHhhhcCCCeEEE
Confidence            3579999999999999999999885 6799998431                    133444445555444    34444


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .  .     ..+-++++|+||.|..
T Consensus        66 ~--~-----~~~al~~aDvViia~~   83 (316)
T 1ldn_A           66 H--G-----DYDDCRDADLVVICAG   83 (316)
T ss_dssp             E--C-----CGGGTTTCSEEEECCS
T ss_pred             c--C-----cHHHhCCCCEEEEcCC
Confidence            2  1     1245789999999953

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.66  E-value=0.0071  Score=54.23  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVTS  191 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~~  191 (236)
                      ..+|.|+|+|.+|+.++..|+..|+++++|+|-+.                    .|++..+..|....    ..+++..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~--------------------~~~~g~a~dL~~~~~~~~~~~~v~~   64 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ--------------------GMPNGKALDLLQTCPIEGVDFKVRG   64 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS--------------------SHHHHHHHHHHTTHHHHTCCCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh--------------------HHHHHHHHHHHhhhhhcCCCcEEEE
Confidence            35789999999999999999999987899988432                    13333444555432    2445543


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..      +.+-++++|+||.+..
T Consensus        65 t~------d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A           65 TN------DYKDLENSDVVIVTAG   82 (321)
T ss_dssp             ES------CGGGGTTCSEEEECCS
T ss_pred             cC------CHHHHCCCCEEEEcCC
Confidence            21      1346789999998863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.64  E-value=0.0026  Score=59.66  Aligned_cols=88  Identities=10%  Similarity=0.061  Sum_probs=62.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+|.+|..+|+.|...|.. ++++|.|.-.                        .+++.+..   .+..+.++.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~-v~vId~d~~~------------------------~~~~~~~~---~~~~i~Gd~~   56 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENND-ITIVDKDGDR------------------------LRELQDKY---DLRVVNGHAS   56 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEE-EEEEESCHHH------------------------HHHHHHHS---SCEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHH------------------------HHHHHHhc---CcEEEEEcCC
Confidence            589999999999999999988854 8999965321                        12233222   2334455444


Q ss_pred             cch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCc
Q psy9587         198 EIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKI  233 (236)
Q Consensus       198 ~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip  233 (236)
                      ...   ..-++++|++|.++++.+....+..+|++. +.+
T Consensus        57 ~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~   96 (461)
T 4g65_A           57 HPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTP   96 (461)
T ss_dssp             CHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCc
Confidence            322   345788999999999999999998888874 443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.63  E-value=0.011  Score=48.44  Aligned_cols=89  Identities=16%  Similarity=0.064  Sum_probs=58.9

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|.| .|.+|..+++.|+..|. ++++++.+.-....+                           .  -.++.+..+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~---------------------------~--~~~~~~~~D   54 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIE---------------------------N--EHLKVKKAD   54 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCC---------------------------C--TTEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhc---------------------------c--CceEEEEec
Confidence            4689999 58999999999999994 688877653221111                           0  134555556


Q ss_pred             CCcch--hhhcCCCcEEEEcCCC-----------HHHHHHHHHHHHHcCC-cEE
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCN-----------PNQLIKIDDFCRSKSK-ISL  235 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~-----------~~~r~~In~~c~~~~i-p~I  235 (236)
                      +.+..  .+.++++|+||.+...           ......+-+.|++.++ .+|
T Consensus        55 l~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  108 (227)
T 3dhn_A           55 VSSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFL  108 (227)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            55432  4567788998888643           3455667778888776 344

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.60  E-value=0.0099  Score=51.57  Aligned_cols=36  Identities=11%  Similarity=0.002  Sum_probs=32.4

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++..+|+|+|+|++|..++..|...|+ +++++|.+.
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~  162 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTK  162 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            456789999999999999999999999 899998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.54  E-value=0.0066  Score=53.40  Aligned_cols=110  Identities=10%  Similarity=0.010  Sum_probs=67.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC--CCceEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN--PNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in--p~v~I~  190 (236)
                      .++.++|+|+|+||+|..++..|+..|+.++++++.+.-....+ ...       +...-.    +.+.+.-  .++-|.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l-a~~-------~~~~~~----~~~~~~~~~aDiVIn  181 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNW-SLN-------INKINL----SHAESHLDEFDIIIN  181 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC-CSC-------CEEECH----HHHHHTGGGCSEEEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH-HHh-------cccccH----hhHHHHhcCCCEEEE
Confidence            35678899999999999999999999999999999876554555 321       111001    1222222  233333


Q ss_pred             EEecCCCc-----chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         191 SNETKVDE-----ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       191 ~~~~~l~~-----~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.+.....     ...+.++.-.+|+|...++.. -.+.+.|++.|.+++
T Consensus       182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~-T~ll~~A~~~G~~~~  230 (277)
T 3don_A          182 TTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYK-TPILIEAEQRGNPIY  230 (277)
T ss_dssp             CCC-------CCSSCCTTCCSSCEEEESCCSSSS-CHHHHHHHHTTCCEE
T ss_pred             CccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCC-CHHHHHHHHCcCEEe
Confidence            32221111     123456667788999876532 246777888888764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.53  E-value=0.02  Score=45.65  Aligned_cols=88  Identities=13%  Similarity=0.029  Sum_probs=54.8

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|.|+ |++|.++++.|+..|. ++++++.+.-   .+ ..  +.                    .+  .++....+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~---~~-~~--~~--------------------~~--~~~~~~~D   54 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSS---RL-PS--EG--------------------PR--PAHVVVGD   54 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGG---GS-CS--SS--------------------CC--CSEEEESC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChh---hc-cc--cc--------------------CC--ceEEEEec
Confidence            46899997 9999999999999994 6777775432   12 10  00                    11  23344445


Q ss_pred             CCcch--hhhcCCCcEEEEcCCC----------HHHHHHHHHHHHHcCCc
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCN----------PNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~----------~~~r~~In~~c~~~~ip  233 (236)
                      +.+..  .+.++++|+||.+...          ......+-+.|++.+++
T Consensus        55 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  104 (206)
T 1hdo_A           55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVD  104 (206)
T ss_dssp             TTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCC
Confidence            54422  3456778888887642          23445666677776653

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.48  E-value=0.013  Score=51.14  Aligned_cols=101  Identities=11%  Similarity=0.120  Sum_probs=61.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC---ceE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN---VEV  189 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~---v~I  189 (236)
                      .+..+|+|.| .|.+|+.+++.|...|. +++.+|...-..                    ......+....+.   -.+
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~~~~   81 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGH--------------------QYNLDEVKTLVSTEQWSRF   81 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCC--------------------HHHHHHHHHTSCHHHHTTE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCc--------------------hhhhhhhhhccccccCCce
Confidence            3557899999 58899999999999995 466666322100                    0111222222110   245


Q ss_pred             EEEecCCCcch--hhhcCCCcEEEEcCCC-----------------HHHHHHHHHHHHHcCC-cEE
Q psy9587         190 TSNETKVDEIS--EEFVHGFDVVIATSCN-----------------PNQLIKIDDFCRSKSK-ISL  235 (236)
Q Consensus       190 ~~~~~~l~~~~--~~~l~~~DlVI~~~d~-----------------~~~r~~In~~c~~~~i-p~I  235 (236)
                      +.+..++.+..  .+.++++|+||.|...                 ...-..+-+.|.+.++ .||
T Consensus        82 ~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v  147 (351)
T 3ruf_A           82 CFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFT  147 (351)
T ss_dssp             EEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            66667776533  4567899999988753                 1122346677888776 454

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.46  E-value=0.0089  Score=51.91  Aligned_cols=78  Identities=21%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|+| +||+|..++..|+..|.. ++++|.+.                    .|++.+++.+... +.+.+.. 
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~--------------------~~~~~l~~~~~~~-~~~~~~~-  173 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKL--------------------DKAQAAADSVNKR-FKVNVTA-  173 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSH--------------------HHHHHHHHHHHHH-HTCCCEE-
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCH--------------------HHHHHHHHHHHhc-CCcEEEE-
Confidence            4567899999 999999999999999986 88877321                    2455566666543 1222222 


Q ss_pred             ecCCCcc-h-hhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEI-S-EEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~-~-~~~l~~~DlVI~~~d  215 (236)
                       .++.+. . .+.++++|+||.|+.
T Consensus       174 -~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          174 -AETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             -EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             -ecCCCHHHHHHHHHhCCEEEECCC
Confidence             223221 1 456678899998874

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.45  E-value=0.019  Score=50.40  Aligned_cols=74  Identities=23%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~~~  192 (236)
                      +|+|||+|.+|+.++..|+..|+ .+++++|.+.                    .|++.++..+....+    .+++.  
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~--   60 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE--------------------AKVKADQIDFQDAMANLEAHGNIV--   60 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH--------------------HHHHHHHHHHHHHGGGSSSCCEEE--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH--------------------HHHHHHHHHHHhhhhhcCCCeEEE--
Confidence            58999999999999999999997 6788888432                    133344444433221    22322  


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPN  218 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~  218 (236)
                      ...     .+.++++|+||.|+....
T Consensus        61 ~~d-----~~~~~~aDvViiav~~~~   81 (309)
T 1hyh_A           61 IND-----WAALADADVVISTLGNIK   81 (309)
T ss_dssp             ESC-----GGGGTTCSEEEECCSCGG
T ss_pred             eCC-----HHHhCCCCEEEEecCCcc
Confidence            221     245689999999987643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.44  E-value=0.011  Score=51.33  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=29.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..+|+|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            3578999999999999999999998 588888543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.43  E-value=0.013  Score=49.38  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|.|||+|.+|..++++|...|+.-..++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            58999999999999999998887655788865

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.42  E-value=0.018  Score=51.41  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC---CCceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN---PNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in---p~v~I~~~  192 (236)
                      .+|.|+|+|.+|..++..|+..|. .+|.|+|-+                    ..|++..+..|....   ..+++.. 
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~--------------------~~~~~g~~~dl~~~~~~~~~~~v~~-   64 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV--------------------KDRTKGDALDLEDAQAFTAPKKIYS-   64 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS--------------------HHHHHHHHHHHHGGGGGSCCCEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC--------------------chHHHHHHHHHHHHHHhcCCeEEEE-
Confidence            579999999999999999999885 568888832                    124555555565543   3444443 


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                       .     ..+-++++|+||.+...
T Consensus        65 -~-----~~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A           65 -G-----EYSDCKDADLVVITAGA   82 (318)
T ss_dssp             -C-----CGGGGTTCSEEEECCCC
T ss_pred             -C-----CHHHhCCCCEEEECCCC
Confidence             1     23457999999998753

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.36  E-value=0.02  Score=50.88  Aligned_cols=73  Identities=12%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVT  190 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~  190 (236)
                      ..+|.|||+|.+|..++..|+..|. .+|.|+|-+.                    .|++..+..|....    ..+++.
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~--------------------~~~~g~~~dl~~~~~~~~~~~~v~   65 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT--------------------EKVRGDVMDLKHATPYSPTTVRVK   65 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH--------------------HHHHHHHHHHHHHGGGSSSCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh--------------------hHhhhhhhhHHhhhhhcCCCeEEE
Confidence            3579999999999999999999886 6799988431                    13333333343332    334444


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .  .     ..+-++++|+||.+..
T Consensus        66 ~--~-----~~~a~~~aDvVvi~ag   83 (317)
T 3d0o_A           66 A--G-----EYSDCHDADLVVICAG   83 (317)
T ss_dssp             E--C-----CGGGGTTCSEEEECCC
T ss_pred             e--C-----CHHHhCCCCEEEECCC
Confidence            3  1     2345799999998874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.36  E-value=0.0037  Score=53.28  Aligned_cols=79  Identities=10%  Similarity=0.015  Sum_probs=51.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|||+|.+|+.++..|+..|...+.++|.+.                    .+++.+++.+     .+.  ..    
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~--------------------~~~~~~~~~~-----g~~--~~----   59 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE--------------------ESARELAQKV-----EAE--YT----   59 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH--------------------HHHHHHHHHT-----TCE--EE----
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH--------------------HHHHHHHHHc-----CCc--ee----
Confidence            4689999999999999999999976577777332                    1222222211     122  11    


Q ss_pred             CcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         197 DEISEEFVHGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                       ....+.++++|+||.|+.+......+.++.
T Consensus        60 -~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~   89 (266)
T 3d1l_A           60 -TDLAEVNPYAKLYIVSLKDSAFAELLQGIV   89 (266)
T ss_dssp             -SCGGGSCSCCSEEEECCCHHHHHHHHHHHH
T ss_pred             -CCHHHHhcCCCEEEEecCHHHHHHHHHHHH
Confidence             112345678999999998776655555554

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.36  E-value=0.016  Score=51.83  Aligned_cols=35  Identities=23%  Similarity=0.031  Sum_probs=31.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|.|+|+|.+|+.+|..|+..|.++++|+|-+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34579999999999999999999999889999954

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.36  E-value=0.018  Score=51.03  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~~~  192 (236)
                      +|.|+|+|.+|+.++..|+..|.. +++|+|-+.                    .|++..+..|...+    ...++...
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~--------------------~~~~g~~~dl~~~~~~~~~~~~i~~t   61 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE--------------------DLAVGEAMDLAHAAAGIDKYPKIVGG   61 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH--------------------HHHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh--------------------HHHHHHHHHHHhhhhhcCCCCEEEEe
Confidence            578999999999999999999974 799988432                    12332333344433    23455443


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..      .+-++++|+||.+..
T Consensus        62 ~d------~~a~~~aDiVViaag   78 (294)
T 1oju_A           62 AD------YSLLKGSEIIVVTAG   78 (294)
T ss_dssp             SC------GGGGTTCSEEEECCC
T ss_pred             CC------HHHhCCCCEEEECCC
Confidence            21      356789999998864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.34  E-value=0.013  Score=51.67  Aligned_cols=72  Identities=19%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC---CCceEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN---PNVEVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in---p~v~I~~~~  193 (236)
                      +|+|||+|.+|+.++..|+..|. ++++|+|-+.   .                 |++..+..+....   +.+++..  
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~---~-----------------~~~~~~~~l~~~~~~~~~~~i~~--   59 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE---D-----------------RAQAEAEDIAHAAPVSHGTRVWH--   59 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH---H-----------------HHHHHHHHHTTSCCTTSCCEEEE--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH---H-----------------HHHHHHHhhhhhhhhcCCeEEEE--
Confidence            58999999999999999999985 5799998542   1                 2222233333332   2334442  


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .     +.+-++++|+||.+...
T Consensus        60 ~-----~~~a~~~aDvVIi~~~~   77 (304)
T 2v6b_A           60 G-----GHSELADAQVVILTAGA   77 (304)
T ss_dssp             E-----CGGGGTTCSEEEECC--
T ss_pred             C-----CHHHhCCCCEEEEcCCC
Confidence            1     12457899999999854

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.33  E-value=0.027  Score=45.99  Aligned_cols=85  Identities=20%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +|+|.| .|++|.++++.|+..|. ++++++.+.   +.+ . .       .                +  .++.+..++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~---~~~-~-~-------~----------------~--~~~~~~~D~   50 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKV---EQV-P-Q-------Y----------------N--NVKAVHFDV   50 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSG---GGS-C-C-------C----------------T--TEEEEECCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCc---cch-h-h-------c----------------C--CceEEEecc
Confidence            478899 78999999999999995 577777543   122 1 0       0                1  345566666


Q ss_pred             Cc-ch--hhhcCCCcEEEEcCC---------CHHHHHHHHHHHHHcCCc
Q psy9587         197 DE-IS--EEFVHGFDVVIATSC---------NPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       197 ~~-~~--~~~l~~~DlVI~~~d---------~~~~r~~In~~c~~~~ip  233 (236)
                      .+ ..  .+.++++|+||.+..         |...-..+-+.|++.+++
T Consensus        51 ~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~   99 (219)
T 3dqp_A           51 DWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVK   99 (219)
T ss_dssp             TSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCC
Confidence            55 32  456788999998874         445566777888888764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.31  E-value=0.015  Score=52.73  Aligned_cols=76  Identities=9%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEE
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSN  192 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~  192 (236)
                      ..+|.|||+ |.+|+.+|..|+..|. .+|.|+|-+                    ..|++..+..|... +|...+...
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~--------------------~~k~~g~a~DL~~~~~~~~~i~~t   67 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF--------------------AVGLEGVAEEIRHCGFEGLNLTFT   67 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC--------------------HHHHHHHHHHHHHHCCTTCCCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC--------------------chhHHHHHHhhhhCcCCCCceEEc
Confidence            457899997 9999999999999997 579998832                    12555555555554 222222221


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           ....+-++++|+||.|...
T Consensus        68 -----~d~~~al~dADvVvitaG~   86 (343)
T 3fi9_A           68 -----SDIKEALTDAKYIVSSGGA   86 (343)
T ss_dssp             -----SCHHHHHTTEEEEEECCC-
T ss_pred             -----CCHHHHhCCCCEEEEccCC
Confidence                 1123457899999988653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.31  E-value=0.0045  Score=57.32  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      -+|+|+|+|.+|..+++.|...|+. ++++|.|.-.                    +    +.+++.  .+  .++.++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~~--------------------v----~~~~~~--g~--~vi~GDa   55 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPDH--------------------I----ETLRKF--GM--KVFYGDA   55 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHHH--------------------H----HHHHHT--TC--CCEESCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHH--------------------H----HHHHhC--CC--eEEEcCC
Confidence            4689999999999999999999975 8888865421                    1    112222  12  2333443


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCC
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~i  232 (236)
                      +...   ..-+.++|+||.|+++......+-..+++.+.
T Consensus        56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p   94 (413)
T 3l9w_A           56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP   94 (413)
T ss_dssp             TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence            3322   22367899999999999999999999998764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.31  E-value=0.018  Score=51.45  Aligned_cols=73  Identities=19%  Similarity=0.134  Sum_probs=50.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~~~  192 (236)
                      +|.|+|+|.+|+.++..|+..|+ ..++|+|-+.                    .|++..+..|....    ..+++...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~--------------------~k~~g~a~DL~~~~~~~~~~~~v~~~   61 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD--------------------GMPQGKALDMRESSPIHGFDTRVTGT   61 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST--------------------THHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch--------------------HHHHHHHHHHhccccccCCCcEEEEC
Confidence            57899999999999999999997 4788888432                    23444444555432    24455432


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                       .     +.+-++++|+||.+...
T Consensus        62 -~-----~~~a~~~aDvVii~ag~   79 (314)
T 3nep_X           62 -N-----DYGPTEDSDVCIITAGL   79 (314)
T ss_dssp             -S-----SSGGGTTCSEEEECCCC
T ss_pred             -C-----CHHHhCCCCEEEECCCC
Confidence             1     23457899999998753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.29  E-value=0.025  Score=49.89  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.++..|+..|...++++|.+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            478999999999999999999998569999965

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.28  E-value=0.0099  Score=52.21  Aligned_cols=97  Identities=11%  Similarity=0.049  Sum_probs=63.1

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|.|+ |.+|+.+++.|+..| .++++++.+.-.                ...|...+ +.+..  +  .++.+..+
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~----------------~~~~~~~~-~~l~~--~--~v~~~~~D   68 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPR----------------SPSKAKIF-KALED--K--GAIIVYGL   68 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCC----------------CHHHHHHH-HHHHH--T--TCEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCC----------------ChhHHHHH-HHHHh--C--CcEEEEee
Confidence            57899997 899999999999999 457776643200                01122211 12222  2  34556666


Q ss_pred             CCcch--hhhcC--CCcEEEEcCC--CHHHHHHHHHHHHHcC-CcEE
Q psy9587         196 VDEIS--EEFVH--GFDVVIATSC--NPNQLIKIDDFCRSKS-KISL  235 (236)
Q Consensus       196 l~~~~--~~~l~--~~DlVI~~~d--~~~~r~~In~~c~~~~-ip~I  235 (236)
                      +.+..  .+.++  ++|+||.+..  +......+-+.|++.+ ++.+
T Consensus        69 l~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~  115 (346)
T 3i6i_A           69 INEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRF  115 (346)
T ss_dssp             TTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEE
T ss_pred             cCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEE
Confidence            66532  45677  9999999875  4566677888888888 6544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.27  E-value=0.05  Score=48.11  Aligned_cols=78  Identities=8%  Similarity=0.112  Sum_probs=54.0

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++..+|+|.| .|++|+++++.|+.. |..++++++.+.-                    |.+.+.+.+.    ...+..
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~--------------------~~~~~~~~~~----~~~v~~   74 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL--------------------KQSEMAMEFN----DPRMRF   74 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHH--------------------HHHHHHHHHC----CTTEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChh--------------------hHHHHHHHhc----CCCEEE
Confidence            4557899999 589999999999999 9878888774321                    2223333332    235666


Q ss_pred             EecCCCcch--hhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~~l~~~DlVI~~~d  215 (236)
                      +..++.+..  .+.++++|+||.+..
T Consensus        75 ~~~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           75 FIGDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             EECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             EECCCCCHHHHHHHHhcCCEEEECCC
Confidence            777776543  456789999998864

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.25  E-value=0.021  Score=51.17  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC---CCceEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN---PNVEVT  190 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in---p~v~I~  190 (236)
                      +..+|.|+|+|.+|..++..|+..|. .+|.|+|-+                    ..|++..+..|....   ..+++.
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~--------------------~~~~~g~~~dl~~~~~~~~~~~i~   67 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF--------------------KDKTKGDAIDLSNALPFTSPKKIY   67 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC--------------------HHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC--------------------chHhHHHHHHHHHHHHhcCCeEEE
Confidence            34679999999999999999998885 468888732                    124555555555443   344444


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .  .     ..+-++++|+||.+...
T Consensus        68 ~--~-----~~~a~~~aDvVii~ag~   86 (326)
T 2zqz_A           68 S--A-----EYSDAKDADLVVITAGA   86 (326)
T ss_dssp             E--C-----CGGGGGGCSEEEECCCC
T ss_pred             E--C-----CHHHhCCCCEEEEcCCC
Confidence            3  1     23457899999988753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.25  E-value=0.02  Score=51.60  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=52.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC---ceEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN---VEVT  190 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~---v~I~  190 (236)
                      +..+|.|+|+|.+|+.++..|+..|. ..++|+|-+                    ..|++..+..|....+.   ..+.
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~--------------------~~~~~g~a~DL~~~~~~~~~~~i~   77 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI--------------------EDKLKGEMMDLQHGSLFLKTPKIV   77 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC--------------------HHHHHHHHHHHHHTGGGCSCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC--------------------hHHHHHHHHhhhhhhhccCCCeEE
Confidence            45689999999999999999999987 478898832                    24677777777765322   2222


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      . ..     +.+-++++|+||.+..
T Consensus        78 ~-~~-----d~~~~~~aDiVvi~aG   96 (331)
T 4aj2_A           78 S-SK-----DYSVTANSKLVIITAG   96 (331)
T ss_dssp             E-CS-----SGGGGTTEEEEEECCS
T ss_pred             E-cC-----CHHHhCCCCEEEEccC
Confidence            1 11     2234799999998864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.25  E-value=0.031  Score=49.44  Aligned_cols=74  Identities=19%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh----hCCCceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN----LNPNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~----inp~v~I~~~  192 (236)
                      .+|.|||+|.+|+.++..|+..|.-.++|+|-+.   +                 |++..+..|.+    .....++...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~---~-----------------~~~g~~~dl~~~~~~~~~~~~i~~t   62 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE---G-----------------VPQGKALDLYEASPIEGFDVRVTGT   62 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS---S-----------------HHHHHHHHHHTTHHHHTCCCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc---c-----------------HHHHHHHhHHHhHhhcCCCeEEEEC
Confidence            3689999999999999999999973499988542   1                 22222223333    3334455543


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      ..      .+-++++|+||.+...
T Consensus        63 ~d------~~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A           63 NN------YADTANSDVIVVTSGA   80 (309)
T ss_dssp             SC------GGGGTTCSEEEECCCC
T ss_pred             CC------HHHHCCCCEEEEcCCC
Confidence            22      1347899999999743

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.24  E-value=0.016  Score=48.17  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=28.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            44679999999999999999999996 58888754

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.011  Score=55.52  Aligned_cols=37  Identities=5%  Similarity=-0.234  Sum_probs=29.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++..+|+|+|+|++|..++..|+..|--+++++|.+
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3456789999999999999999999844478888754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.23  E-value=0.0079  Score=49.05  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.-                    +..    .+  ..+  .++.+..++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------------~~~----~~--~~~--~~~~~~~D~   52 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQ--------------------KAA----DR--LGA--TVATLVKEP   52 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHH--------------------HHH----HH--TCT--TSEEEECCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEeccc--------------------ccc----cc--cCC--CceEEeccc
Confidence            4889996 8999999999999996 4666653211                    111    11  112  334455555


Q ss_pred             CcchhhhcCCCcEEEEcCCC----------HHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEISEEFVHGFDVVIATSCN----------PNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~d~----------~~~r~~In~~c~~~~ip~I  235 (236)
                      .+...+.+.++|+||.+...          ...-..+-+.|++.+..+|
T Consensus        53 ~d~~~~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  101 (224)
T 3h2s_A           53 LVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAV  101 (224)
T ss_dssp             GGCCHHHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEE
T ss_pred             ccccHhhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEE
Confidence            54333667899999988743          3344455566666665554

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.20  E-value=0.031  Score=49.85  Aligned_cols=33  Identities=18%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.++..|+..|...++|+|-|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            478999999999999999999998449999854

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.20  E-value=0.012  Score=51.35  Aligned_cols=99  Identities=6%  Similarity=0.089  Sum_probs=57.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +..+|+|.|+ |.+|+.+++.|+..|.. ++..+|...... ..  .                   .+..+...-.++.+
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~-~~--~-------------------~l~~~~~~~~~~~~   80 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG-NL--N-------------------NVKSIQDHPNYYFV   80 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC-CG--G-------------------GGTTTTTCTTEEEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc-ch--h-------------------hhhhhccCCCeEEE
Confidence            4467999997 89999999999999943 355555432111 11  0                   01111112245556


Q ss_pred             ecCCCcch--hhhcCC--CcEEEEcCCCH-----------------HHHHHHHHHHHHcCCc-EE
Q psy9587         193 ETKVDEIS--EEFVHG--FDVVIATSCNP-----------------NQLIKIDDFCRSKSKI-SL  235 (236)
Q Consensus       193 ~~~l~~~~--~~~l~~--~DlVI~~~d~~-----------------~~r~~In~~c~~~~ip-~I  235 (236)
                      ..++.+..  .+.+++  +|+||.+....                 ..-..+-+.|++.+++ +|
T Consensus        81 ~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v  145 (346)
T 4egb_A           81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLV  145 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEE
T ss_pred             EcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            66665432  344554  88888775421                 1235667788888776 55

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.19  E-value=0.005  Score=54.33  Aligned_cols=114  Identities=12%  Similarity=-0.027  Sum_probs=63.8

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|+|+|++|..++..|+..|+.+++++|.+.-....+ -..+-....++-.  .    +.+.+.-....+.+..
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l-a~~~~~~~~~~~~--~----~~~~~~~~~aDivIn~  211 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL-VREGDERRSAYFS--L----AEAETRLAEYDIIINT  211 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH-HHHSCSSSCCEEC--H----HHHHHTGGGCSEEEEC
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH-HHHhhhccCceee--H----HHHHhhhccCCEEEEC
Confidence            4567899999999999999999999999999998764332223 1111000000000  0    1222222223333332


Q ss_pred             cCCCc--------chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDE--------ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~--------~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .....        ...+.++.-.+|+|...++... .+.+.+++.|..++
T Consensus       212 t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T-~ll~~A~~~G~~~v  260 (297)
T 2egg_A          212 TSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLET-KWLKEAKARGARVQ  260 (297)
T ss_dssp             SCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSC-HHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCC-HHHHHHHHCcCEEE
Confidence            22111        1123455556788888764322 25677888887654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.17  E-value=0.04  Score=47.31  Aligned_cols=88  Identities=9%  Similarity=0.096  Sum_probs=56.4

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|.| .|.+|+.+++.|...|. +++.++.+.   ...                 +     +.      .++.+..+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~-----------------~-----~~------~~~~~~~D   50 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI---GNK-----------------A-----IN------DYEYRVSD   50 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC---C---------------------------------CCEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC---Ccc-----------------c-----CC------ceEEEEcc
Confidence            4689999 68999999999999997 577766541   111                 0     00      33444445


Q ss_pred             CCcch-hhhcCCCcEEEEcCCC-------------HHHHHHHHHHHHHcCCc-EEC
Q psy9587         196 VDEIS-EEFVHGFDVVIATSCN-------------PNQLIKIDDFCRSKSKI-SLF  236 (236)
Q Consensus       196 l~~~~-~~~l~~~DlVI~~~d~-------------~~~r~~In~~c~~~~ip-~I~  236 (236)
                      +.... .+.++++|+||.|...             ...-..+-+.|++.+++ +||
T Consensus        51 l~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~  106 (311)
T 3m2p_A           51 YTLEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVY  106 (311)
T ss_dssp             CCHHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccHHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            54111 4566788988887532             33446777888888876 553

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.13  E-value=0.012  Score=52.16  Aligned_cols=72  Identities=21%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC---CCceEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN---PNVEVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in---p~v~I~~~~  193 (236)
                      +|+|||+|.+|+.++..|+..|. +.++++|.+.                    .|++.++..+....   +..++..  
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~--------------------~~~~~~~~~l~~~~~~~~~~~i~~--   59 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK--------------------KRAEGDALDLIHGTPFTRRANIYA--   59 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH--------------------HHHHHHHHHHHHHGGGSCCCEEEE--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh--------------------HHHHHHHHHHHhhhhhcCCcEEEe--
Confidence            58899999999999999999995 4688888542                    12233333333222   2334432  


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .     +.+.++++|+||.|...
T Consensus        60 ~-----d~~~~~~aDvViiav~~   77 (319)
T 1a5z_A           60 G-----DYADLKGSDVVIVAAGV   77 (319)
T ss_dssp             C-----CGGGGTTCSEEEECCCC
T ss_pred             C-----CHHHhCCCCEEEEccCC
Confidence            1     12346899999999864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.13  E-value=0.0051  Score=54.33  Aligned_cols=109  Identities=12%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|+|+||.|..++..|...|+++|++++.+.-....| -..+-.    +   ..    +.+.++..++-|++.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L-a~~~~~----~---~~----~~l~~l~~DivInaTp  187 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI-YGEFKV----I---SY----DELSNLKGDVIINCTP  187 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH-CTTSEE----E---EH----HHHTTCCCSEEEECSS
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH-HHhcCc----c---cH----HHHHhccCCEEEECCc
Confidence            4667899999999999999999999999999998765444444 332100    0   00    1122222233333332


Q ss_pred             cCCCc------chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDE------ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~------~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .....      ...+.++...+|+|...++.. -.+-+.|++.|.+++
T Consensus       188 ~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~-T~ll~~A~~~G~~~~  234 (282)
T 3fbt_A          188 KGMYPKEGESPVDKEVVAKFSSAVDLIYNPVE-TLFLKYARESGVKAV  234 (282)
T ss_dssp             TTSTTSTTCCSSCHHHHTTCSEEEESCCSSSS-CHHHHHHHHTTCEEE
T ss_pred             cCccCCCccCCCCHHHcCCCCEEEEEeeCCCC-CHHHHHHHHCcCeEe
Confidence            21111      134556777788888876532 234556777776654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.10  E-value=0.018  Score=50.82  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.++.+|+..|...++++|.+
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            579999999999999999999998789999975

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.09  E-value=0.015  Score=50.34  Aligned_cols=94  Identities=15%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      +|+|+|| |.+|..+++.+... |+.-+.++|.+    .++                    .+ +....+++-|......
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----~dl--------------------~~-~~~~~~DvvIDfT~p~   56 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----DPL--------------------SL-LTDGNTEVVIDFTHPD   56 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----CCT--------------------HH-HHHTTCCEEEECSCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----CCH--------------------HH-HhccCCcEEEEccChH
Confidence            5899997 99999999998865 76555566642    122                    11 1122445444433222


Q ss_pred             CCcchhh--hcCCCcEEEEcCC-CHHHHHHHHHHHHHc-CCcEEC
Q psy9587         196 VDEISEE--FVHGFDVVIATSC-NPNQLIKIDDFCRSK-SKISLF  236 (236)
Q Consensus       196 l~~~~~~--~l~~~DlVI~~~d-~~~~r~~In~~c~~~-~ip~I~  236 (236)
                      ....+..  .-.+.++|+.++. +.+....|.++|++. ++|+++
T Consensus        57 a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~  101 (245)
T 1p9l_A           57 VVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLI  101 (245)
T ss_dssp             THHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEE
Confidence            2222222  2246788887764 456677888888876 888764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.09  E-value=0.017  Score=52.12  Aligned_cols=84  Identities=7%  Similarity=-0.040  Sum_probs=53.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhC---------CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSG---------VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV  187 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~G---------Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v  187 (236)
                      .+|.|+|+|.+|+.+++.|....         +.-..+.|.+.-.   -  +.       ++.                .
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~---~--~~-------~~~----------------~   55 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRK---P--RA-------IPQ----------------E   55 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTS---C--CS-------SCG----------------G
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHH---h--hc-------cCc----------------c
Confidence            57899999999999999998753         3334555654211   1  11       110                0


Q ss_pred             eEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         188 EVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       188 ~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .+   ..++    .+++ +.|+|++|+.+......+...|.++|+.+|+
T Consensus        56 ~~---~~d~----~~ll-~iDvVve~t~~~~~a~~~~~~AL~aGKhVVt   96 (332)
T 2ejw_A           56 LL---RAEP----FDLL-EADLVVEAMGGVEAPLRLVLPALEAGIPLIT   96 (332)
T ss_dssp             GE---ESSC----CCCT-TCSEEEECCCCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cc---cCCH----HHHh-CCCEEEECCCCcHHHHHHHHHHHHcCCeEEE
Confidence            01   1111    2344 8999999998876656667778889998874

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.06  E-value=0.0095  Score=50.45  Aligned_cols=33  Identities=9%  Similarity=0.038  Sum_probs=28.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.+++.|+..|.   .+++++|.+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            368999999999999999999997   367887754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.04  E-value=0.0082  Score=51.17  Aligned_cols=32  Identities=9%  Similarity=-0.171  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            58999999999999999999997 689988764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.02  E-value=0.024  Score=50.33  Aligned_cols=71  Identities=21%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC---CCceEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN---PNVEVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in---p~v~I~~~~  193 (236)
                      +|.|+|+|.+|..++..|+..|. ++|.|+|-+                    ..|++..+..|....   ..+++..  
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~--------------------~~k~~g~a~dl~~~~~~~~~~~v~~--   59 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLD--------------------RKLAQAHAEDILHATPFAHPVWVWA--   59 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS--------------------HHHHHHHHHHHHTTGGGSCCCEEEE--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC--------------------hhHHHHHHHHHHHhHhhcCCeEEEE--
Confidence            58999999999999999998875 568888843                    124555555565543   3445553  


Q ss_pred             cCCCcchhhhcCCCcEEEEcCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .     ..+-++++|+||.+..
T Consensus        60 ~-----~~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A           60 G-----SYGDLEGARAVVLAAG   76 (310)
T ss_dssp             C-----CGGGGTTEEEEEECCC
T ss_pred             C-----CHHHhCCCCEEEECCC
Confidence            1     1345799999998864

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.00  E-value=0.035  Score=48.30  Aligned_cols=35  Identities=9%  Similarity=0.031  Sum_probs=28.5

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++..+|+|.|+ |++|+.+++.|+..|. +++++|.+
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            34567999996 8999999999999995 57777753

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.00  E-value=0.034  Score=51.87  Aligned_cols=34  Identities=12%  Similarity=-0.107  Sum_probs=29.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++|+|+|+|++|..++..|+..|. +++++|.+.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            3578999999999999999999995 488888654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.99  E-value=0.032  Score=50.31  Aligned_cols=75  Identities=15%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC---CceEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP---NVEVT  190 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp---~v~I~  190 (236)
                      ...+|.|+|+|.+|+.+|..|+..|+ +.++|+|-+                    ..|++..+..|....+   ..++.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~--------------------~~~~~g~a~DL~~~~~~~~~~~i~   79 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM--------------------EDKLKGEMMDLEHGSLFLHTAKIV   79 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC--------------------HHHHHHHHHHHHHHGGGSCCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC--------------------HHHHHHHHHHhhhhhhcccCCeEE
Confidence            34679999999999999999999998 679998832                    1234444555554422   33333


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .. .++     +-++++|+||.+..
T Consensus        80 ~t-~d~-----~~~~daDiVIitaG   98 (330)
T 3ldh_A           80 SG-KDY-----SVSAGSKLVVITAG   98 (330)
T ss_dssp             EE-SSS-----CSCSSCSEEEECCS
T ss_pred             Ec-CCH-----HHhCCCCEEEEeCC
Confidence            32 222     23799999998753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.98  E-value=0.0073  Score=52.62  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=51.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|.|||+|..|+.++..|+..|.  .+++++|.+.-                    |++.+++.    . .+.  .   
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~--------------------~~~~l~~~----~-gi~--~---   53 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD--------------------KLDFFKEK----C-GVH--T---   53 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH--------------------HHHHHHHT----T-CCE--E---
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH--------------------HHHHHHHH----c-CCE--E---
Confidence            468999999999999999999996  26888774321                    22222221    1 121  1   


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                        .....+.++++|+||.|+.+......+.++..
T Consensus        54 --~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~   85 (280)
T 3tri_A           54 --TQDNRQGALNADVVVLAVKPHQIKMVCEELKD   85 (280)
T ss_dssp             --ESCHHHHHSSCSEEEECSCGGGHHHHHHHHHH
T ss_pred             --eCChHHHHhcCCeEEEEeCHHHHHHHHHHHHh
Confidence              11234567889999999876555555655543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.98  E-value=0.0073  Score=47.80  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      -|+|||+|..|..+|..|++.|+. ++|+|..
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~-V~v~Ek~   34 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQ-VHLFDKS   34 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCC-EEEEECC
Confidence            489999999999999999999996 8899854

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.96  E-value=0.026  Score=48.18  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=59.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|+|+ |.+|+.+++.|+..|. ++++++.+.-.     .+         ...|+..+ +.+.  .+.  ++....+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~-----~~---------~~~~~~~~-~~l~--~~~--v~~v~~D   64 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTA-----SS---------NSEKAQLL-ESFK--ASG--ANIVHGS   64 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCT-----TT---------THHHHHHH-HHHH--TTT--CEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCccc-----cc---------CHHHHHHH-HHHH--hCC--CEEEEec
Confidence            46899996 8999999999999994 46665532210     00         01122222 1121  233  4455566


Q ss_pred             CCcch--hhhcCCCcEEEEcCCCH--HHHHHHHHHHHHcC-CcE
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCNP--NQLIKIDDFCRSKS-KIS  234 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~~--~~r~~In~~c~~~~-ip~  234 (236)
                      +.+..  .+.++++|+||.+....  .....+-+.|++.+ ++-
T Consensus        65 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  108 (308)
T 1qyc_A           65 IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKR  108 (308)
T ss_dssp             TTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSE
T ss_pred             cCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCce
Confidence            65432  45678899999987642  34456677888877 543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.95  E-value=0.011  Score=52.65  Aligned_cols=33  Identities=21%  Similarity=0.085  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      .+|.|||+|.+|..++..|+..|. ++|+|+|-+
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            578999999999999999999886 679999954

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.93  E-value=0.029  Score=50.18  Aligned_cols=33  Identities=15%  Similarity=0.037  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.+|..|+..|...++|+|-|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            478999999999999999999998459999955

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.045  Score=47.45  Aligned_cols=82  Identities=9%  Similarity=0.088  Sum_probs=60.2

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      ++.++|+|.| .||+|.++|+.|+..|.+  ++.++|.+                    ..+.+.+++.+...++..++.
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~--------------------~~~~~~~~~~l~~~~~~~~~~   90 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR--------------------LEKLEELKKTIDQEFPNAKVH   90 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC--------------------HHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC--------------------HHHHHHHHHHHHhhCCCCeEE
Confidence            4667899999 469999999999999985  67776632                    135666788888888888888


Q ss_pred             EEecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         191 SNETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      .+..++++..  ..       .+...|++|.+..
T Consensus        91 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG  124 (287)
T 3rku_A           91 VAQLDITQAEKIKPFIENLPQEFKDIDILVNNAG  124 (287)
T ss_dssp             EEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            8888776532  22       2346899998754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.91  E-value=0.061  Score=44.24  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +..+|+|.| .|++|.++++.|+..|.. +++++|.+.-   .+ ...           +           .+  .+..+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~---~~-~~~-----------~-----------~~--~~~~~   68 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL---TF-DEE-----------A-----------YK--NVNQE   68 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC---CC-CSG-----------G-----------GG--GCEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC---Cc-ccc-----------c-----------cC--CceEE
Confidence            346789999 689999999999999973 6888775421   12 100           0           00  23444


Q ss_pred             ecCCCcch--hhhcCCCcEEEEcCCC
Q psy9587         193 ETKVDEIS--EEFVHGFDVVIATSCN  216 (236)
Q Consensus       193 ~~~l~~~~--~~~l~~~DlVI~~~d~  216 (236)
                      ..++++..  .+.++++|+||.|...
T Consensus        69 ~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           69 VVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             ECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             ecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            55554422  4567889999998753

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.90  E-value=0.06  Score=45.65  Aligned_cols=88  Identities=11%  Similarity=0.050  Sum_probs=55.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +|+|.| .|.+|+.+++.|...+-.++++++.+.-....+                          ..+  .++....++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~--------------------------~~~--~v~~~~~D~   53 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD--------------------------WRG--KVSVRQLDY   53 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG--------------------------GBT--TBEEEECCT
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh--------------------------hhC--CCEEEEcCC
Confidence            478899 589999999999987334566666443211111                          001  344555566


Q ss_pred             Ccch--hhhcCCCcEEEEcCCC-------HHHHHHHHHHHHHcCCc
Q psy9587         197 DEIS--EEFVHGFDVVIATSCN-------PNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       197 ~~~~--~~~l~~~DlVI~~~d~-------~~~r~~In~~c~~~~ip  233 (236)
                      .+..  ...++++|+||.+...       ...-..+-+.|++.+++
T Consensus        54 ~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~   99 (289)
T 3e48_A           54 FNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVA   99 (289)
T ss_dssp             TCHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCC
Confidence            5432  4567889999988643       23445677788888764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.88  E-value=0.034  Score=49.69  Aligned_cols=33  Identities=18%  Similarity=0.067  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.+|..|+..|...++|+|-+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            478999999999999999999999559999965

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.88  E-value=0.096  Score=45.03  Aligned_cols=79  Identities=10%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE-
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN-  192 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~-  192 (236)
                      +..+|+|.|+ |++|+++++.|+..|. +++++|.+.                    .+.+.+.+.+....+ -.++.+ 
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~--------------------~~~~~~~~~~~~~~~-~~~~~~~   67 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA--------------------SKLANLQKRWDAKYP-GRFETAV   67 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH--------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc--------------------ccHHHHHHHhhccCC-CceEEEE
Confidence            4467999996 8999999999999986 466655321                    123333444443332 245555 


Q ss_pred             ecCCCcch--hhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~~l~~~DlVI~~~d  215 (236)
                      ..++.+..  .+.++++|+||.+..
T Consensus        68 ~~D~~d~~~~~~~~~~~d~vih~A~   92 (342)
T 1y1p_A           68 VEDMLKQGAYDEVIKGAAGVAHIAS   92 (342)
T ss_dssp             CSCTTSTTTTTTTTTTCSEEEECCC
T ss_pred             ecCCcChHHHHHHHcCCCEEEEeCC
Confidence            45555422  455678999998863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.85  E-value=0.026  Score=49.97  Aligned_cols=34  Identities=9%  Similarity=-0.054  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|.|||+|.+|+.++..|+..|..+++++|.+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            5799999999999999999999955788888653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.82  E-value=0.014  Score=51.78  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=29.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      ..+|+|||+|.+|+.+++.|...|.. +++++|.+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            35799999999999999999999984 68888754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.82  E-value=0.015  Score=49.90  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|...|.. +++++|.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            589999999999999999999963 57777743

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.81  E-value=0.022  Score=46.05  Aligned_cols=85  Identities=9%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +|+|.| .|++|..+++.|+..|. ++++++.+.                    .+.       ..+.+.  ++....++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~--------------------~~~-------~~~~~~--~~~~~~D~   51 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA--------------------GKI-------TQTHKD--INILQKDI   51 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS--------------------HHH-------HHHCSS--SEEEECCG
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc--------------------hhh-------hhccCC--CeEEeccc
Confidence            488999 58999999999999995 577766321                    111       111133  34445555


Q ss_pred             CcchhhhcCCCcEEEEcCCC--------HHHHHHHHHHHHHcCC
Q psy9587         197 DEISEEFVHGFDVVIATSCN--------PNQLIKIDDFCRSKSK  232 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~d~--------~~~r~~In~~c~~~~i  232 (236)
                      .+...+.+.++|+||.|...        ...-..+-+.|++.+.
T Consensus        52 ~d~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~   95 (221)
T 3ew7_A           52 FDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVS   95 (221)
T ss_dssp             GGCCHHHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCS
T ss_pred             cChhhhhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCC
Confidence            44333667889999988643        2344566667776643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.80  E-value=0.041  Score=47.06  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=59.7

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|+|+ |.+|+.+++.|+..|. ++++++.+.-.               ....|++.+. .+.  .+.  ++....+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~---------------~~~~~~~~~~-~~~--~~~--~~~~~~D   63 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVV---------------SNIDKVQMLL-YFK--QLG--AKLIEAS   63 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCS---------------SCHHHHHHHH-HHH--TTT--CEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcc---------------cchhHHHHHH-HHH--hCC--eEEEeCC
Confidence            46899995 9999999999999995 46665532100               0011222221 121  233  4455666


Q ss_pred             CCcch--hhhcCCCcEEEEcCC------CHHHHHHHHHHHHHcC-Cc
Q psy9587         196 VDEIS--EEFVHGFDVVIATSC------NPNQLIKIDDFCRSKS-KI  233 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d------~~~~r~~In~~c~~~~-ip  233 (236)
                      +.+..  .+.++++|+||.+..      +......+-+.|++.+ ++
T Consensus        64 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~  110 (313)
T 1qyd_A           64 LDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIK  110 (313)
T ss_dssp             SSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCS
T ss_pred             CCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCc
Confidence            65532  456789999998864      3445567778888887 54

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.80  E-value=0.038  Score=49.98  Aligned_cols=76  Identities=11%  Similarity=0.071  Sum_probs=50.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+|+|||+|+.|..++..|.. .++.+++++|.+.                    .|++.+++.+... +.+.+....
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~--------------------~~a~~la~~~~~~-~g~~~~~~~  186 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDP--------------------LATAKLIANLKEY-SGLTIRRAS  186 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSH--------------------HHHHHHHHHHTTC-TTCEEEECS
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH--------------------HHHHHHHHHHHhc-cCceEEEeC
Confidence            34689999999999999999864 4788898887321                    2555566555432 233333221


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           ...+.+.++|+||.|+.+
T Consensus       187 -----~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          187 -----SVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             -----SHHHHHTTCSEEEECCCC
T ss_pred             -----CHHHHHhcCCEEEEeccC
Confidence                 123556778888888764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.79  E-value=0.07  Score=45.42  Aligned_cols=98  Identities=14%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCC-hHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK-NRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk-~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|+|+ |.+|+.+++.|+..|. ++++++.+.-   .-  .         .. .|++.+ +.+..  +.  ++....
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~---~~--~---------~~~~~~~~~-~~l~~--~~--v~~v~~   62 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTI---TA--A---------NPETKEELI-DNYQS--LG--VILLEG   62 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSC---CS--S---------CHHHHHHHH-HHHHH--TT--CEEEEC
T ss_pred             cEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCc---cc--C---------ChHHHHHHH-HHHHh--CC--CEEEEe
Confidence            46899996 8999999999999995 4666553320   00  0         00 233322 22222  33  344556


Q ss_pred             CCCcch--hhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcC-CcE
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSCN--PNQLIKIDDFCRSKS-KIS  234 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~-ip~  234 (236)
                      ++.+..  ...++++|+||.+...  ......+-+.|++.+ ++-
T Consensus        63 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  107 (307)
T 2gas_A           63 DINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKK  107 (307)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSE
T ss_pred             CCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHhcCCceE
Confidence            665432  4567899999998753  444556777888877 543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.78  E-value=0.056  Score=51.17  Aligned_cols=84  Identities=13%  Similarity=-0.012  Sum_probs=63.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|+|+|.+|..+++.|...|.. ++++|.|.-....+ .                               ..+.++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~-~-------------------------------~~i~gD~  395 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCND-H-------------------------------VVVYGDA  395 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCS-S-------------------------------CEEESCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhc-C-------------------------------CEEEeCC
Confidence            6799999999999999999999987 88999775322111 0                               2333333


Q ss_pred             Ccc---hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy9587         197 DEI---SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       197 ~~~---~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip  233 (236)
                      ++.   ...-++++|.+|.++++.+....+.-.|++.+.+
T Consensus       396 t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          396 TVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSH  435 (565)
T ss_dssp             SSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CCHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCC
Confidence            332   2445789999999999999999999999998864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.76  E-value=0.013  Score=49.61  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.++..|+..|.   ..++++|.+
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            368999999999999999999995   578998865

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.74  E-value=0.072  Score=45.09  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=52.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+..+..++..+
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSS--------------------EGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHhhcCCceEEEE
Confidence            4557888998 569999999999999975 66666321                    2344455666666555566666


Q ss_pred             ecCCCcch--hhh-------cCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EEF-------VHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~~-------l~~~DlVI~~~  214 (236)
                      ..++++..  ..+       +...|++|.+.
T Consensus        70 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  100 (267)
T 1iy8_A           70 VADVSDEAQVEAYVTATTERFGRIDGFFNNA  100 (267)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665422  122       33678888775

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.73  E-value=0.054  Score=46.80  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +|+|.| .|.+|+.+++.|+..|. +++++|.+.-...++ .                       .  +  .++.+..++
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l-~-----------------------~--~--~~~~~~~Dl   65 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRL-A-----------------------Y--L--EPECRVAEM   65 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGG-G-----------------------G--G--CCEEEECCT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhh-c-----------------------c--C--CeEEEEecC
Confidence            689999 58999999999999995 577777543211111 0                       0  1  234445555


Q ss_pred             Ccch--hhhcCCCcEEEEcCCC---------------HHHHHHHHHHHHHcCC-cEE
Q psy9587         197 DEIS--EEFVHGFDVVIATSCN---------------PNQLIKIDDFCRSKSK-ISL  235 (236)
Q Consensus       197 ~~~~--~~~l~~~DlVI~~~d~---------------~~~r~~In~~c~~~~i-p~I  235 (236)
                      .+..  .+.++++|+||.+...               ...-..+-+.|.+.++ .+|
T Consensus        66 ~d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  122 (342)
T 2x4g_A           66 LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRIL  122 (342)
T ss_dssp             TCHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEE
T ss_pred             CCHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            5432  4566788999887642               1223456667777664 444

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.73  E-value=0.069  Score=47.05  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|+..|. .+++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            58899999999999999999764 469999865

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.72  E-value=0.02  Score=50.10  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+||| +|.+|+.++..|...|. .++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            4689999 99999999999999997 58888754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.71  E-value=0.038  Score=46.87  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=26.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|+|.|+|.+|+.+++.|...|.. ++.++.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r   34 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHE-VTGLRR   34 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4689999999999999999999974 666654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.69  E-value=0.053  Score=45.78  Aligned_cols=81  Identities=12%  Similarity=0.137  Sum_probs=52.6

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC-ceEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN-VEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~-v~I~~  191 (236)
                      ++.++++|.|+ ||+|.++++.|+..|. ++.++|.+.                    .+.+.+++.+.+.++. .++..
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~   63 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSK--------------------QNLEKVHDEIMRSNKHVQEPIV   63 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCH--------------------HHHHHHHHHHHHHCTTSCCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH--------------------HHHHHHHHHHHHhccccCcceE
Confidence            35578899995 6999999999999998 477766321                    2455566666666544 45556


Q ss_pred             EecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      +..++++..  .       +.+...|++|.+..
T Consensus        64 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAA   96 (250)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             EeccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            665655421  1       12245777777653

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.69  E-value=0.014  Score=50.60  Aligned_cols=106  Identities=7%  Similarity=0.017  Sum_probs=61.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++. +|+|+|+|+.|..++..|+..|+.+|+++|.+.-....+ ...+-  ...     .+.+.+.+.  ..++-|.+.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l-a~~~~--~~~-----~~~~~~~~~--~aDiVInatp  175 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL-DFPVK--IFS-----LDQLDEVVK--KAKSLFNTTS  175 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC-CSSCE--EEE-----GGGHHHHHH--TCSEEEECSS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH-HHHcc--cCC-----HHHHHhhhc--CCCEEEECCC
Confidence            355 899999999999999999999999999999876444455 33211  000     011122222  1233333222


Q ss_pred             cCCC----cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy9587         194 TKVD----EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       194 ~~l~----~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip  233 (236)
                      ....    ....+.+..-.+|+|...+   ...+-+.+++.|++
T Consensus       176 ~gm~p~~~~i~~~~l~~~~~V~Divy~---~T~ll~~A~~~G~~  216 (253)
T 3u62_A          176 VGMKGEELPVSDDSLKNLSLVYDVIYF---DTPLVVKARKLGVK  216 (253)
T ss_dssp             TTTTSCCCSCCHHHHTTCSEEEECSSS---CCHHHHHHHHHTCS
T ss_pred             CCCCCCCCCCCHHHhCcCCEEEEeeCC---CcHHHHHHHHCCCc
Confidence            1111    1123456666788888777   23445566666665

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.69  E-value=0.014  Score=51.29  Aligned_cols=34  Identities=12%  Similarity=-0.019  Sum_probs=30.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++|+|+|+||.|..++..|+..| .+|++++.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence            578999999999999999999999 8999987553

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.65  E-value=0.08  Score=43.87  Aligned_cols=90  Identities=9%  Similarity=-0.018  Sum_probs=57.4

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      -++|+|.| .|++|..+++.|+..|--++++++.+.-....+      ..                      -.++.+..
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~------~~----------------------~~~~~~~~   74 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP------YP----------------------TNSQIIMG   74 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS------CC----------------------TTEEEEEC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc------cc----------------------CCcEEEEe
Confidence            35789999 689999999999999944677777543221111      00                      13455666


Q ss_pred             CCCcch--hhhcCCCcEEEEcCCCHH---HHHHHHHHHHHcCCc
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSCNPN---QLIKIDDFCRSKSKI  233 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d~~~---~r~~In~~c~~~~ip  233 (236)
                      ++.+..  ...++++|+||.+.....   ....+-+.|++.++.
T Consensus        75 Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~  118 (236)
T 3qvo_A           75 DVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVK  118 (236)
T ss_dssp             CTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCC
Confidence            665432  456788999997765322   223455667776654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.64  E-value=0.042  Score=47.79  Aligned_cols=36  Identities=17%  Similarity=0.071  Sum_probs=26.0

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.+..+|+|.|+ |.+|+.+++.|+..|.. ++++|..
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~   52 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRT-VRGFDLR   52 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCC
Confidence            345678999996 89999999999999964 6666643

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.64  E-value=0.078  Score=44.99  Aligned_cols=81  Identities=12%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+                    ..+.+.+++.+.+.++...+..+
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~--------------------~~~~~~~~~~l~~~~~~~~~~~~   66 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRR--------------------EENVNETIKEIRAQYPDAILQPV   66 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS--------------------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC--------------------HHHHHHHHHHHHhhCCCceEEEE
Confidence            46678899995 69999999999999975 6666632                    12455667778888877788777


Q ss_pred             ecCCCcch-----hhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS-----EEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~-----~~~l~~~DlVI~~~d  215 (236)
                      ..++++..     .+.+...|++|.+..
T Consensus        67 ~~D~~~~~~~~~~~~~~g~id~lv~nAg   94 (267)
T 3t4x_A           67 VADLGTEQGCQDVIEKYPKVDILINNLG   94 (267)
T ss_dssp             ECCTTSHHHHHHHHHHCCCCSEEEECCC
T ss_pred             ecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            77776532     223457899998754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.61  E-value=0.086  Score=44.81  Aligned_cols=81  Identities=14%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+......+..+
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~   88 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTV--------------------GNIEELAAECKSAGYPGTLIPY   88 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTCSSEEEEE
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCh--------------------HHHHHHHHHHHhcCCCceEEEE
Confidence            4557889998 579999999999999975 66665321                    2344455566655444466666


Q ss_pred             ecCCCcch--hhh-------cCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EEF-------VHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~~-------l~~~DlVI~~~d  215 (236)
                      ..++.+..  ..+       +...|+||.+..
T Consensus        89 ~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           89 RCDLSNEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            66665422  122       237888887753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.61  E-value=0.041  Score=44.92  Aligned_cols=90  Identities=11%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             ceEEEEc-CChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGP-LTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ++|+|.| .|++|..+++.|+ ..|. ++++++.+.-+  .+                 +    .+....+  .+..+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~--~~-----------------~----~~~~~~~--~~~~~~~   59 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT--RI-----------------P----PEIIDHE--RVTVIEG   59 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH--HS-----------------C----HHHHTST--TEEEEEC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc--cc-----------------h----hhccCCC--ceEEEEC
Confidence            4589999 5899999999999 8887 57776643210  11                 0    0111222  4556666


Q ss_pred             CCCcch--hhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcCCc
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSCN--PNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~ip  233 (236)
                      ++.+..  .+.++++|+||.+...  .. ...+-+.|++.+.+
T Consensus        60 D~~d~~~~~~~~~~~d~vv~~ag~~n~~-~~~~~~~~~~~~~~  101 (221)
T 3r6d_A           60 SFQNPGXLEQAVTNAEVVFVGAMESGSD-MASIVKALSRXNIR  101 (221)
T ss_dssp             CTTCHHHHHHHHTTCSEEEESCCCCHHH-HHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHcCCCEEEEcCCCCChh-HHHHHHHHHhcCCC
Confidence            666532  4567899999988753  44 45555666776653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.58  E-value=0.014  Score=49.94  Aligned_cols=31  Identities=16%  Similarity=0.115  Sum_probs=27.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|.+|+.+++.|...|. +++++|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            58899999999999999999997 58887743

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.57  E-value=0.028  Score=49.42  Aligned_cols=32  Identities=28%  Similarity=0.257  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            478999999999999999999996 48888754

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.56  E-value=0.053  Score=47.31  Aligned_cols=92  Identities=20%  Similarity=0.308  Sum_probs=55.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHh-CCceEEEeeCCcc--cccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILS-GVKSVCLLDSGVV--TKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~-GVg~I~LvD~D~V--e~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      -+|+|+|| |.+|..+++.+... |+.-..++|.+.-  .-.++ ...       .|..+            ..+.+   
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~-~~~-------~g~~~------------~~v~~---   62 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDA-GEL-------AGAGK------------TGVTV---   62 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCT-TCS-------SSSSC------------CSCCE---
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhH-HHH-------cCCCc------------CCcee---
Confidence            47899999 99999999998753 4332336664321  11122 110       01100            01121   


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ...+    .+.+.++|+||+++ ++..-..+-+.|.++|+++|+
T Consensus        63 ~~dl----~~~l~~~DvVIDft-~p~~~~~~~~~a~~~G~~vVi  101 (273)
T 1dih_A           63 QSSL----DAVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMVI  101 (273)
T ss_dssp             ESCS----TTTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCH----HHHhcCCCEEEEcC-ChHHHHHHHHHHHhCCCCEEE
Confidence            1112    24456899999998 455667888899999999874

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.55  E-value=0.0096  Score=51.49  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+.-.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHH
Confidence            368999999999999999999996 58888876533

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.55  E-value=0.088  Score=49.18  Aligned_cols=93  Identities=18%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..++|+|+|.|-+|..+|+.|-. + .++++++.|.                    .|++.++    +..|.+.  +.++
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d~--------------------~r~~~la----~~l~~~~--Vi~G  285 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERNL--------------------QRAEKLS----EELENTI--VFCG  285 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESCH--------------------HHHHHHH----HHCTTSE--EEES
T ss_pred             cccEEEEEcchHHHHHHHHHhhh-c-CceEEEecCH--------------------HHHHHHH----HHCCCce--EEec
Confidence            45689999999999999999853 3 4677777443                    2344444    4445543  4455


Q ss_pred             CCCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.++..   ++-+.++|++|.++++.+......-+|+++|++-+
T Consensus       286 D~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kv  329 (461)
T 4g65_A          286 DAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKV  329 (461)
T ss_dssp             CTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEE
T ss_pred             cccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccc
Confidence            544432   55678999999999999999999999999998643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.52  E-value=0.059  Score=45.42  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             cccceEEEEcC-C-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGPL-T-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG~-G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++.++|+|.|+ | |+|.++++.|+..|.. +.++|.+.                    .+.+.+.+.+.+.. ..++..
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHE--------------------RRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHTTC-SSCEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCH--------------------HHHHHHHHHHHhcC-CCceEE
Confidence            46678999998 7 8999999999999976 66766331                    23444455554443 235666


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++++..  ..       .+...|++|.+..
T Consensus        78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            666665421  11       1235677776653

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.48  E-value=0.11  Score=43.40  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|..++.++|.+.-                    +  ...+.+.+..+..++..+
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~--------------------~--~~~~~l~~~~~~~~~~~~   60 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN--------------------P--TALAELKAINPKVNITFH   60 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC--------------------H--HHHHHHHHHCTTSEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch--------------------H--HHHHHHHHhCCCceEEEE
Confidence            3456788888 5799999999999999877777763210                    0  122344555555567777


Q ss_pred             ecCCCcc-h--hhh-------cCCCcEEEEcCC
Q psy9587         193 ETKVDEI-S--EEF-------VHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~-~--~~~-------l~~~DlVI~~~d  215 (236)
                      ..++++. .  .++       +...|+||.+..
T Consensus        61 ~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   93 (254)
T 1sby_A           61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEecCCChHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            6666543 2  122       247899887753

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.47  E-value=0.092  Score=44.51  Aligned_cols=81  Identities=10%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+.+.+.+.++..++..+
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~~~~~~~~~   64 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDG--------------------ERLRAAESALRQRFPGARLFAS   64 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHSTTCCEEEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHHhcCCceEEEE
Confidence            4567889998 569999999999999986 77766321                    2455566667766666667777


Q ss_pred             ecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      ..++++..  .       +.+...|++|.+..
T Consensus        65 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg   96 (265)
T 3lf2_A           65 VCDVLDALQVRAFAEACERTLGCASILVNNAG   96 (265)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCSCSEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66665422  1       12346788887653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.43  E-value=0.021  Score=48.28  Aligned_cols=89  Identities=9%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|+|.|+ |.+|+.+++.|+..  |. ++++++.+.   +..                 ..    +..  +.  ++.+..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~---~~~-----------------~~----l~~--~~--~~~~~~   52 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNV---EKA-----------------ST----LAD--QG--VEVRHG   52 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCT---TTT-----------------HH----HHH--TT--CEEEEC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCH---HHH-----------------hH----Hhh--cC--CeEEEe
Confidence            5788996 89999999999988  74 477766421   111                 11    111  22  344455


Q ss_pred             CCCcch--hhhcCCCcEEEEcCC-------CHHHHHHHHHHHHHcCC-cEE
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSC-------NPNQLIKIDDFCRSKSK-ISL  235 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d-------~~~~r~~In~~c~~~~i-p~I  235 (236)
                      ++.+..  .+.++++|+||.+..       +...-..+-+.|++.++ .+|
T Consensus        53 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  103 (287)
T 2jl1_A           53 DYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIA  103 (287)
T ss_dssp             CTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             ccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEE
Confidence            555432  456778999988764       33445566778887776 444

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.41  E-value=0.028  Score=49.66  Aligned_cols=36  Identities=8%  Similarity=-0.151  Sum_probs=31.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~  150 (236)
                      ...+|+|||+|..|..++.+|... |+.+++++|.+.
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~  170 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTK  170 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSH
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            446899999999999999999988 888999998654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.41  E-value=0.025  Score=47.89  Aligned_cols=32  Identities=9%  Similarity=0.090  Sum_probs=27.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|..++..|...| ..+.++|.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECCC
Confidence            36899999999999999999988 468888754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.40  E-value=0.021  Score=50.49  Aligned_cols=35  Identities=9%  Similarity=0.042  Sum_probs=30.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+|||+|.+|+.++.+|+..|. .++++|.+.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCH
Confidence            34589999999999999999999997 488888664

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=95.40  E-value=0.05  Score=47.92  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhC-CceEEEeeCCcc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSG-VKSVCLLDSGVV  151 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~G-Vg~I~LvD~D~V  151 (236)
                      ..+|+|||+|.+|...+..|...+ +.-+.++|.+.-
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~   41 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLE   41 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSS
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHH
Confidence            357899999999999999998774 333446676543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.38  E-value=0.097  Score=45.70  Aligned_cols=83  Identities=10%  Similarity=0.111  Sum_probs=50.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+|.|+ |.+|+.+++.|+..|. +++++|...-.                ...+.+.+.+.+.... .-.++.+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~   87 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG----------------HQRNLDEVRSLVSEKQ-WSNFKFIQ   87 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC----------------CHHHHHHHHHHSCHHH-HTTEEEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc----------------chhhHHHHhhhccccc-CCceEEEE
Confidence            4467999997 8999999999999996 47776642110                0011222222221110 12455666


Q ss_pred             cCCCcch--hhhcCCCcEEEEcCC
Q psy9587         194 TKVDEIS--EEFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~--~~~l~~~DlVI~~~d  215 (236)
                      .++.+..  .+.++++|+||.|..
T Consensus        88 ~Dl~d~~~~~~~~~~~d~vih~A~  111 (352)
T 1sb8_A           88 GDIRNLDDCNNACAGVDYVLHQAA  111 (352)
T ss_dssp             CCTTSHHHHHHHHTTCSEEEECCS
T ss_pred             CCCCCHHHHHHHhcCCCEEEECCc
Confidence            6666532  456789999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.37  E-value=0.048  Score=47.51  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            478999999999999999999997 588888654

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=95.36  E-value=0.1  Score=46.02  Aligned_cols=105  Identities=19%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      ++|.+||+|..|..+|++|+..|.. ++++|.+.-....+ ..        .|-..++.    +.+.-..+.+....-.-
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l-~~--------~Ga~~a~s----~~e~~~~~dvv~~~l~~   69 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQSAVDGL-VA--------AGASAARS----ARDAVQGADVVISMLPA   69 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSHHHHHHH-HH--------TTCEECSS----HHHHHTTCSEEEECCSC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCe-EEEEcCCHHHHHHH-HH--------cCCEEcCC----HHHHHhcCCceeecCCc
Confidence            4689999999999999999999975 78887543222222 10        11111111    11111223333221110


Q ss_pred             Ccch----------hhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEIS----------EEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~~----------~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+.-          ...++.=++||+++ .++.....+.+.+.++|+-|+
T Consensus        70 ~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l  119 (300)
T 3obb_A           70 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  119 (300)
T ss_dssp             HHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             hHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            0000          11223346888775 678899999999999998775

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.36  E-value=0.062  Score=46.30  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=57.6

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|+|+ |.+|+.+++.|+..|. ++++++.+.-                   .++..+ +.+..  +.  ++....+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~-------------------~~~~~~-~~l~~--~~--v~~v~~D   66 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNS-------------------SKTTLL-DEFQS--LG--AIIVKGE   66 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTC-------------------SCHHHH-HHHHH--TT--CEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCC-------------------chhhHH-HHhhc--CC--CEEEEec
Confidence            46899995 8999999999999995 4666553210                   011111 11222  23  3445566


Q ss_pred             CCcch--hhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcC-CcE
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCN--PNQLIKIDDFCRSKS-KIS  234 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~-ip~  234 (236)
                      +.+..  ...++++|+||.+...  ......+-+.|++.+ ++.
T Consensus        67 l~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  110 (318)
T 2r6j_A           67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKR  110 (318)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCE
T ss_pred             CCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCCE
Confidence            65432  4567899999998753  233456667777776 543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.35  E-value=0.1  Score=45.64  Aligned_cols=90  Identities=18%  Similarity=0.188  Sum_probs=58.7

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++|+.|+..|. ++.++|.+.-    + .+.     ..-...+.+.+++.+.....  ++..
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~----~-~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~   90 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG----L-DGS-----PASGGSAAQSVVDEITAAGG--EAVA   90 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC----T-TSS-----BTCTTSHHHHHHHHHHHTTC--EEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCccc----c-ccc-----ccccHHHHHHHHHHHHhcCC--cEEE
Confidence            456788999995 6999999999999998 4777775531    1 111     11223466777777776643  5666


Q ss_pred             EecCCCcch--hhh-------cCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EEF-------VHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~~-------l~~~DlVI~~~d  215 (236)
                      +..++++..  .++       +...|++|.+..
T Consensus        91 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           91 DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             ECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666666432  222       347899997754

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.34  E-value=0.068  Score=45.83  Aligned_cols=28  Identities=11%  Similarity=0.214  Sum_probs=22.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|+|.|+ |.+|+.+++.|+..|  .+..++
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g--~~v~~~   31 (313)
T 3ehe_A            3 LIVVTGGAGFIGSHVVDKLSESN--EIVVID   31 (313)
T ss_dssp             CEEEETTTSHHHHHHHHHHTTTS--CEEEEC
T ss_pred             EEEEECCCchHHHHHHHHHHhCC--CEEEEE
Confidence            5788994 899999999999999  444444

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.33  E-value=0.056  Score=46.54  Aligned_cols=98  Identities=11%  Similarity=0.008  Sum_probs=59.2

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|+|+ |.+|+.+++.|+..|. ++++++.+.-+   -           -...|++.+. .+..  +.  ++....+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~---~-----------~~~~~~~~l~-~~~~--~~--v~~v~~D   64 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLTP---D-----------STPSSVQLRE-EFRS--MG--VTIIEGE   64 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCCT---T-----------CCHHHHHHHH-HHHH--TT--CEEEECC
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCccc---c-----------cChHHHHHHH-Hhhc--CC--cEEEEec
Confidence            46899995 9999999999999995 57776643100   0           0001222221 1221  23  4455566


Q ss_pred             CCcch--hhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcC-CcE
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCN--PNQLIKIDDFCRSKS-KIS  234 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~-ip~  234 (236)
                      +.+..  ...++++|+||.|...  ......+-+.|.+.+ ++-
T Consensus        65 ~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  108 (321)
T 3c1o_A           65 MEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKR  108 (321)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCE
T ss_pred             CCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCccE
Confidence            65432  4567899999998764  234456677777777 543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.31  E-value=0.18  Score=42.91  Aligned_cols=86  Identities=13%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.+.-....+ ..            ..+.+++.+....  .++..+
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~-~~------------~~~~~~~~~~~~~--~~~~~~   67 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKL-PG------------TIHSAAAAVNAAG--GQGLAL   67 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTS-CC------------CHHHHHHHHHHHT--SEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhh-HH------------HHHHHHHHHHhcC--CeEEEE
Confidence            4667889999 45999999999999998 588888654332222 11            1333444555543  355566


Q ss_pred             ecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      ..++++..  .       +.+...|++|.+..
T Consensus        68 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           68 KCDIREEDQVRAAVAATVDTFGGIDILVNNAS   99 (274)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66665421  1       12346788887653

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.31  E-value=0.11  Score=45.96  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccc-cCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTK-EDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~-sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++..+|+|.|+ |.+|+.+++.|+..|..+++++|...-.. .++ .                          ..-.++.
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l-~--------------------------~~~~v~~   82 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINV-P--------------------------DHPAVRF   82 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGS-C--------------------------CCTTEEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhc-c--------------------------CCCceEE
Confidence            34467999995 89999999999999955677776532111 111 0                          0124555


Q ss_pred             EecCCCcch--hhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~~l~~~DlVI~~~d  215 (236)
                      +..++.+..  .+.++++|+||.+..
T Consensus        83 ~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           83 SETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             ECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             EECCCCCHHHHHHHhhCCCEEEECCC
Confidence            666665432  456778999998864

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.30  E-value=0.095  Score=44.70  Aligned_cols=31  Identities=13%  Similarity=0.165  Sum_probs=25.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   33 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNL   33 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            5889997 8999999999999997 46676643

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.29  E-value=0.085  Score=46.87  Aligned_cols=73  Identities=14%  Similarity=0.057  Sum_probs=49.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ...+|+|||+|+.|...+..|... ++.++.++|.+                    ..|++.+++.+....  +.+. ..
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--------------------~~~a~~la~~~~~~~--~~~~-~~  180 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR--------------------EKAAKKFVSYCEDRG--ISAS-VQ  180 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS--------------------HHHHHHHHHHHHHTT--CCEE-EC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC--------------------HHHHHHHHHHHHhcC--ceEE-EC
Confidence            346899999999999999999874 68888887732                    235666676665432  2332 11


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           .-.+.+ ++|+||.|+.+
T Consensus       181 -----~~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          181 -----PAEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             -----CHHHHT-SSSEEEECCCC
T ss_pred             -----CHHHHh-CCCEEEEeeCC
Confidence                 123455 78998888864

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.28  E-value=0.096  Score=46.10  Aligned_cols=73  Identities=25%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh---CCCceEEEE
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL---NPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i---np~v~I~~~  192 (236)
                      +|+|+| +|.+|+.++..|+..|.. ++.|+|-    +.|-              .|++..+..|...   ...+++.. 
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di----~~~~--------------~~~~~~~~dl~~~~~~~~~~~v~~-   62 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI----PDKE--------------DDTVGQAADTNHGIAYDSNTRVRQ-   62 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC----GGGH--------------HHHHHHHHHHHHHHTTTCCCEEEE-
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC----CCCh--------------hhHHHHHHHHHHHHhhCCCcEEEe-
Confidence            589999 999999999999988864 5888884    1111              1222223344443   44556654 


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                       .     ..+.++++|+||.+..
T Consensus        63 -~-----~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A           63 -G-----GYEDTAGSDVVVITAG   79 (303)
T ss_dssp             -C-----CGGGGTTCSEEEECCC
T ss_pred             -C-----CHHHhCCCCEEEEcCC
Confidence             1     1345789999998864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.28  E-value=0.061  Score=49.78  Aligned_cols=93  Identities=15%  Similarity=0.064  Sum_probs=58.1

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|+|.|+.|..+|+.|...|.. +++.|....+..                    ...+.|.+.  .+++.  .
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~-V~~~D~~~~~~~--------------------~~~~~L~~~--gi~~~--~   61 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAI-VTVNDGKPFDEN--------------------PTAQSLLEE--GIKVV--C   61 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCE-EEEEESSCGGGC--------------------HHHHHHHHT--TCEEE--E
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCE-EEEEeCCcccCC--------------------hHHHHHHhC--CCEEE--E
Confidence            3557899999999999999999999966 888885431100                    123455554  34443  2


Q ss_pred             cCCCcchhhhcCC-CcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHG-FDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~-~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.-   ..+.+.+ +|+||.+..-+...-. -..+++.|+|++
T Consensus        62 g~~---~~~~~~~~~d~vv~spgi~~~~p~-~~~a~~~gi~v~  100 (451)
T 3lk7_A           62 GSH---PLELLDEDFCYMIKNPGIPYNNPM-VKKALEKQIPVL  100 (451)
T ss_dssp             SCC---CGGGGGSCEEEEEECTTSCTTSHH-HHHHHHTTCCEE
T ss_pred             CCC---hHHhhcCCCCEEEECCcCCCCChh-HHHHHHCCCcEE
Confidence            211   1234566 9999987642222222 345678888876

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.26  E-value=0.062  Score=45.38  Aligned_cols=81  Identities=6%  Similarity=-0.003  Sum_probs=52.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|.|+|.+|+.+++.|...|.. ++.++.+.-                    +...    +..  +  .++.+..++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~~--------------------~~~~----~~~--~--~~~~~~~D~   56 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWR-IIGTSRNPD--------------------QMEA----IRA--S--GAEPLLWPG   56 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCE-EEEEESCGG--------------------GHHH----HHH--T--TEEEEESSS
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCE-EEEEEcChh--------------------hhhh----Hhh--C--CCeEEEecc
Confidence            4789999999999999999999864 666553211                    1111    111  1  355555665


Q ss_pred             CcchhhhcCCCcEEEEcCCC----HHHHHHHHHHHHH
Q psy9587         197 DEISEEFVHGFDVVIATSCN----PNQLIKIDDFCRS  229 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~d~----~~~r~~In~~c~~  229 (236)
                      .+.  + +.++|+||.|...    ......+.+.|++
T Consensus        57 ~d~--~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~   90 (286)
T 3ius_A           57 EEP--S-LDGVTHLLISTAPDSGGDPVLAALGDQIAA   90 (286)
T ss_dssp             SCC--C-CTTCCEEEECCCCBTTBCHHHHHHHHHHHH
T ss_pred             ccc--c-cCCCCEEEECCCccccccHHHHHHHHHHHh
Confidence            542  2 7899999988742    2334556667776

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.25  E-value=0.16  Score=43.55  Aligned_cols=86  Identities=10%  Similarity=0.143  Sum_probs=56.1

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-....+ .            .+.+.+++.+.....  ++..+
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~-~------------~~~~~~~~~~~~~~~--~~~~~   70 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKL-P------------GTIYTAAKEIEEAGG--QALPI   70 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS-C------------CCHHHHHHHHHHHTS--EEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhh-h------------HHHHHHHHHHHhcCC--cEEEE
Confidence            45678899995 6999999999999998 588888664333333 1            124445666666643  56666


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      ..++++..  ..       .+...|++|.+..
T Consensus        71 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           71 VGDIRDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66665422  12       2347898887753

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.25  E-value=0.13  Score=44.79  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   59 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   59 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567899996 8999999999999996 4777664

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.24  E-value=0.1  Score=46.35  Aligned_cols=32  Identities=19%  Similarity=0.070  Sum_probs=27.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|.|+ |.+|+.+++.|+..|. +++++|.+
T Consensus        30 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   62 (379)
T 2c5a_A           30 LKISITGAGGFIASHIARRLKHEGH-YVIASDWK   62 (379)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            57899996 8999999999999995 57777754

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.23  E-value=0.059  Score=45.94  Aligned_cols=30  Identities=10%  Similarity=0.031  Sum_probs=25.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|+. |. +++++|.+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~   32 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT   32 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC
Confidence            58899999999999999999 87 47887743

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=95.21  E-value=0.19  Score=44.00  Aligned_cols=105  Identities=13%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|.+||+|-.|..+|++|+..|.. ++++|.+.-....+ ..        .|-.-    ++.+.+.-..+.+....-.-
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l-~~--------~G~~~----~~s~~e~~~~~dvvi~~l~~   71 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYE-LVVWNRTASKAEPL-TK--------LGATV----VENAIDAITPGGIVFSVLAD   71 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEC-------CTT-TT--------TTCEE----CSSGGGGCCTTCEEEECCSS
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHH-HH--------cCCeE----eCCHHHHHhcCCceeeeccc
Confidence            4699999999999999999999985 78888654333333 11        11111    11122222233333322110


Q ss_pred             C--------cchhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 D--------EISEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~--------~~~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .        ......+..-++||++. .++.....+.+.+.++|+-|+
T Consensus        72 ~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           72 DAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             HHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            0        11122345567888775 678888899999999988775

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.20  E-value=0.14  Score=43.04  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=27.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGAR-LLLFSR   39 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            3456788998 569999999999999974 777663

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.19  E-value=0.063  Score=47.65  Aligned_cols=33  Identities=6%  Similarity=-0.051  Sum_probs=26.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh--CCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~  148 (236)
                      ..+|+|||+|.+|...+..|...  |+.-+.++|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~   47 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI   47 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            36799999999999999999987  4444446663

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.17  E-value=0.018  Score=49.53  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=27.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.++..|+..|.+ ++.++|.+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            4789999999999999999999743 57777743

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.14  E-value=0.085  Score=47.00  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             eEEEEc-CChhHHHHHHHHHHh-CC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILS-GV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~-GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|.|+| +|.||..++..|+.. +. .+|+|+|-+.                     |++..+..|......+++..+..
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~---------------------~~~G~a~Dl~~~~~~~~v~~~~~   60 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP---------------------VTPGVAVDLSHIPTAVKIKGFSG   60 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST---------------------THHHHHHHHHTSCSSEEEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC---------------------CchhHHHHhhCCCCCceEEEecC
Confidence            588999 899999999999876 54 5799988432                     11223344555433455655422


Q ss_pred             CCCcchhhhcCCCcEEEEcCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d  215 (236)
                         ....+-++++|+||.+..
T Consensus        61 ---~~~~~~~~~aDivii~ag   78 (312)
T 3hhp_A           61 ---EDATPALEGADVVLISAG   78 (312)
T ss_dssp             ---SCCHHHHTTCSEEEECCS
T ss_pred             ---CCcHHHhCCCCEEEEeCC
Confidence               123456799999998864

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.13  E-value=0.08  Score=46.34  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=50.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|+| +|.+|..+++.+... ++.-+.++|...-   ..       ...|+|.         +..+.+.+.+     
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~---~~-------~G~d~ge---------l~g~~~gv~v-----   63 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGS---PQ-------LGQDAGA---------FLGKQTGVAL-----   63 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTC---TT-------TTSBTTT---------TTTCCCSCBC-----
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCc---cc-------ccccHHH---------HhCCCCCcee-----
Confidence            5789999 899999999998864 3333344564321   00       0112221         0011111111     


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                        ...-.+.+.++|+||+++. +..-...-+.|.++|+|+|
T Consensus        64 --~~dl~~ll~~~DVVIDfT~-p~a~~~~~~~al~~G~~vV  101 (272)
T 4f3y_A           64 --TDDIERVCAEADYLIDFTL-PEGTLVHLDAALRHDVKLV  101 (272)
T ss_dssp             --BCCHHHHHHHCSEEEECSC-HHHHHHHHHHHHHHTCEEE
T ss_pred             --cCCHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEE
Confidence              1112344556788888873 4445566677778888776

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.11  E-value=0.11  Score=44.94  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=25.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|+|.| .|++|..+++.|+..|.. ++++|.
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r   37 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYD-VVIADN   37 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCc-EEEEec
Confidence            5789998 589999999999999975 666653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.10  E-value=0.039  Score=49.86  Aligned_cols=36  Identities=22%  Similarity=0.116  Sum_probs=31.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|+ ++..+|..
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  203 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRS  203 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5678899999999999999999999998 47777754

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.09  E-value=0.02  Score=50.63  Aligned_cols=87  Identities=16%  Similarity=0.028  Sum_probs=61.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ..+|+|+|+|.+|..+++.|...|.  ++++|.|.-                    +++     +++  ..  +....++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~~--------------------~~~-----~~~--~~--~~~i~gd  163 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDENV--------------------RKK-----VLR--SG--ANFVHGD  163 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGGG--------------------HHH-----HHH--TT--CEEEESC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCChh--------------------hhh-----HHh--CC--cEEEEeC
Confidence            3479999999999999999999887  888885531                    122     111  12  3345555


Q ss_pred             CCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy9587         196 VDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       196 l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip  233 (236)
                      .++..   ..-++++|.||.++++.+....+...+++.+.+
T Consensus       164 ~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~~  204 (336)
T 1lnq_A          164 PTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES  204 (336)
T ss_dssp             TTSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCTT
T ss_pred             CCCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCCC
Confidence            44322   233678999999999888888888888887653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.07  E-value=0.038  Score=50.09  Aligned_cols=110  Identities=19%  Similarity=0.193  Sum_probs=64.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~  194 (236)
                      ..+|.|||+|.+|..++.+|+..|. .++++|.+.-....+ ...        |-.-+....+.+... .|++-+...+.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l-~~~--------g~~~~~s~~e~~~~a~~~DvVi~~vp~   91 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQAL-ERE--------GIAGARSIEEFCAKLVKPRVVWLMVPA   91 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH-HTT--------TCBCCSSHHHHHHHSCSSCEEEECSCG
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH-HHC--------CCEEeCCHHHHHhcCCCCCEEEEeCCH
Confidence            3579999999999999999999995 588888764333333 111        000011122222221 23444444443


Q ss_pred             CCCcc----hhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEI----SEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~----~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I  235 (236)
                      .....    -...++.-++||++.. .+.....+.+.+...++.|+
T Consensus        92 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v  137 (358)
T 4e21_A           92 AVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYV  137 (358)
T ss_dssp             GGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEE
Confidence            31111    1223555678888864 45666777778888887664

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.05  E-value=0.098  Score=44.55  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=28.2

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+|.|+ |.+|+.+++.|+..|. +++.+|...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            3468999997 8999999999999996 477776544

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.03  E-value=0.077  Score=44.82  Aligned_cols=29  Identities=17%  Similarity=0.046  Sum_probs=25.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|.|||+|.+|+.++..|+..|. +++++|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            58899999999999999999997 466654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.02  E-value=0.11  Score=45.89  Aligned_cols=87  Identities=16%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|||+|.+|...+..|... |+.-+.++|.+.                    .+++.+++    ... +.  .+.  
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~--------------------~~~~~~a~----~~g-~~--~~~--   55 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI--------------------EGAQRLAE----ANG-AE--AVA--   55 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSH--------------------HHHHHHHH----TTT-CE--EES--
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCH--------------------HHHHHHHH----HcC-Cc--eeC--
Confidence            4789999999999999999886 443333555321                    12333222    222 22  211  


Q ss_pred             CCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         196 VDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       196 l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                         .-.+++.  ++|+|+.|+.+.... .+...|.+.|+++++
T Consensus        56 ---~~~~~l~~~~~D~V~i~tp~~~h~-~~~~~al~~gk~v~~   94 (344)
T 3euw_A           56 ---SPDEVFARDDIDGIVIGSPTSTHV-DLITRAVERGIPALC   94 (344)
T ss_dssp             ---SHHHHTTCSCCCEEEECSCGGGHH-HHHHHHHHTTCCEEE
T ss_pred             ---CHHHHhcCCCCCEEEEeCCchhhH-HHHHHHHHcCCcEEE
Confidence               1234454  789998888654433 334456677777663

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.00  E-value=0.051  Score=48.28  Aligned_cols=34  Identities=9%  Similarity=-0.131  Sum_probs=29.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|...+..+|.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3468999999999999999999999988888774

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.99  E-value=0.16  Score=44.58  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHH--hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIIL--SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~--~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      ++..+|+|.| .|++|+.+++.|+.  .|.. ++++|...-...-. .+.    ...++..         .... ...+.
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~-~~~----~~~~~~~---------~~~~-~~~~~   71 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAK-VVVLDKFRSNTLFS-NNR----PSSLGHF---------KNLI-GFKGE   71 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSE-EEEEECCCCC------------CCCCCCG---------GGGT-TCCSE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCe-EEEEECCCcccccc-ccc----hhhhhhh---------hhcc-ccCce
Confidence            3556899997 68999999999999  6765 66666432210000 000    0111111         0111 12345


Q ss_pred             EEecCCCcch--hhh-cCCCcEEEEcCCC---------------HHHHHHHHHHHHHcCCcEEC
Q psy9587         191 SNETKVDEIS--EEF-VHGFDVVIATSCN---------------PNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       191 ~~~~~l~~~~--~~~-l~~~DlVI~~~d~---------------~~~r~~In~~c~~~~ip~I~  236 (236)
                      .+..++.+..  ... ..++|+||.|...               ...-..+-+.|++.++++||
T Consensus        72 ~~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~  135 (362)
T 3sxp_A           72 VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIY  135 (362)
T ss_dssp             EEECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEE
T ss_pred             EEECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence            5556665432  233 5789999977641               12334566788888877664

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.99  E-value=0.21  Score=42.25  Aligned_cols=92  Identities=13%  Similarity=0.063  Sum_probs=56.3

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-...+-     .   ..-...+.+.+...+....  .++..
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~~   75 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNE-----Y---PLATSRDLEEAGLEVEKTG--RKAYT   75 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSC-----S---CCCCHHHHHHHHHHHHHTT--SCEEE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccc-----c---chhhhHHHHHHHHHHHhcC--CceEE
Confidence            346678999995 59999999999999976 77777542111111     0   0011234555566666554  35666


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++.+..  ..       .+...|++|.+..
T Consensus        76 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           76 AEVDVRDRAAVSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665432  12       2347899998754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.98  E-value=0.028  Score=49.61  Aligned_cols=31  Identities=16%  Similarity=0.063  Sum_probs=25.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLL  146 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~Lv  146 (236)
                      ...+|+|||+|++|+.++..|+..|. .++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            44679999999999999999999996 46665

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.95  E-value=0.044  Score=46.98  Aligned_cols=32  Identities=16%  Similarity=0.054  Sum_probs=27.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|||+|.+|+.++..|+..|. +++++| +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CH
Confidence            368999999999999999999997 588888 54

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=94.95  E-value=0.07  Score=47.38  Aligned_cols=33  Identities=18%  Similarity=-0.035  Sum_probs=25.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~  148 (236)
                      ..+|+|||+|.+|...+..|... |+.-+.++|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~   38 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR   38 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            35789999999999999999876 5444446564

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=94.92  E-value=0.12  Score=43.69  Aligned_cols=87  Identities=15%  Similarity=0.051  Sum_probs=52.6

Q ss_pred             cceEEEEcCChhHHHHHHH--HHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         116 IYVYSTGPLTRVGAEIAKN--IILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~--La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ..+|+|||+|.+|..+++.  +...|+.-+.++|.|.-..    ++.       ++                .+.|..  
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~----g~~-------i~----------------gv~V~~--  135 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI----GTE-------VG----------------GVPVYN--  135 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT----TCE-------ET----------------TEEEEE--
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH----HhH-------hc----------------CCeeec--
Confidence            3578999999999999995  3456777788988665221    110       00                123322  


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                        . +.-.++++..|+|+.|+.+.... .+.+.|.+.|+..|
T Consensus       136 --~-~dl~eli~~~D~ViIAvPs~~~~-ei~~~l~~aGi~~I  173 (215)
T 2vt3_A          136 --L-DDLEQHVKDESVAILTVPAVAAQ-SITDRLVALGIKGI  173 (215)
T ss_dssp             --G-GGHHHHCSSCCEEEECSCHHHHH-HHHHHHHHTTCCEE
T ss_pred             --h-hhHHHHHHhCCEEEEecCchhHH-HHHHHHHHcCCCEE
Confidence              1 11245555559999998765544 67788888888744

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.87  E-value=0.022  Score=49.16  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.-
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence            58999999999999999999996 5888887643

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=94.86  E-value=0.12  Score=46.18  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHH-H-hCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNII-L-SGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La-~-~GVg~I~LvD~  148 (236)
                      +..+|+|||+|.+|...+..|. . .|+.-+.++|.
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~   57 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDI   57 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeC
Confidence            4468999999999999999998 3 34444446663

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.85  E-value=0.0086  Score=50.06  Aligned_cols=32  Identities=13%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEE-eeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCL-LDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~L-vD~D  149 (236)
                      .+|+|||+|.+|+.+++.|+..|.. +++ +|.+
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIP-AIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCC-EEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCC
Confidence            4789999999999999999999974 555 6644

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.85  E-value=0.069  Score=46.98  Aligned_cols=95  Identities=17%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++..+|+|.| .|.+|+.+++.|+.. |. +++.+|...-....+      ..                   .+  .++.
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~------~~-------------------~~--~v~~   73 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDL------VK-------------------HE--RMHF   73 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGG------GG-------------------ST--TEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhh------cc-------------------CC--CeEE
Confidence            3456899999 689999999999998 65 577777543111111      00                   11  4556


Q ss_pred             EecCCC-cch--hhhcCCCcEEEEcCCC--HHH---------------HHHHHHHHHHcCCcEEC
Q psy9587         192 NETKVD-EIS--EEFVHGFDVVIATSCN--PNQ---------------LIKIDDFCRSKSKISLF  236 (236)
Q Consensus       192 ~~~~l~-~~~--~~~l~~~DlVI~~~d~--~~~---------------r~~In~~c~~~~ip~I~  236 (236)
                      +..++. +..  .+.++++|+||.|...  ...               -..+-+.|++.+..|||
T Consensus        74 ~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~  138 (372)
T 3slg_A           74 FEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVF  138 (372)
T ss_dssp             EECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEE
T ss_pred             EeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence            666666 322  3456789999976532  111               13456677777766653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.84  E-value=0.075  Score=49.55  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=31.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      +|+|||+|.+|+.+|..|+..|. +++++|.+.-....+
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l   41 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQL   41 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHH
Confidence            68999999999999999999997 588999775333334

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.83  E-value=0.13  Score=43.48  Aligned_cols=79  Identities=19%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.+.                    .+.+.+++.+.+.. ..++..+
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~--------------------~~~~~~~~~l~~~~-~~~~~~~   65 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST--------------------ADIDACVADLDQLG-SGKVIGV   65 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH--------------------HHHHHHHHHHHTTS-SSCEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH--------------------HHHHHHHHHHHhhC-CCcEEEE
Confidence            4667889998 56999999999999998 477776432                    23444555555443 1355555


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~  214 (236)
                      ..++++..  ..       .+...|++|.+.
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   96 (262)
T 3pk0_A           66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANA   96 (262)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55555421  11       223677777664

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.82  E-value=0.19  Score=41.84  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=51.0

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+..+  ++..+
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~--~~~~~   63 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINA--------------------EAAEAVAKQIVADGG--TAISV   63 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTC--EEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCH--------------------HHHHHHHHHHHhcCC--cEEEE
Confidence            45678899995 69999999999999986 77766321                    234455555655443  45555


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~  214 (236)
                      ..++++..  ..       .+...|++|.+.
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   94 (253)
T 3qiv_A           64 AVDVSDPESAKAMADRTLAEFGGIDYLVNNA   94 (253)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665421  11       223678888775

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.80  E-value=0.25  Score=41.95  Aligned_cols=91  Identities=13%  Similarity=0.043  Sum_probs=55.2

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|.|+ |.+|+.+++.|+..|-.++++++.+.-                  +.++    +.+..  +.  ++....+
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~------------------~~~~----~~l~~--~~--~~~~~~D   59 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR------------------KKAA----KELRL--QG--AEVVQGD   59 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT------------------SHHH----HHHHH--TT--CEEEECC
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC------------------CHHH----HHHHH--CC--CEEEEec
Confidence            57899997 899999999999988445666653210                  0111    12222  23  3445555


Q ss_pred             CCcch--hhhcCCCcEEEEcCCCH---------HHHHHHHHHHHHcCCc
Q psy9587         196 VDEIS--EEFVHGFDVVIATSCNP---------NQLIKIDDFCRSKSKI  233 (236)
Q Consensus       196 l~~~~--~~~l~~~DlVI~~~d~~---------~~r~~In~~c~~~~ip  233 (236)
                      +.+..  ...++++|+||.+....         ..-..+-+.|++.+++
T Consensus        60 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~  108 (299)
T 2wm3_A           60 QDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLH  108 (299)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCC
Confidence            55432  45678899999887521         2233555667777764

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=94.77  E-value=0.14  Score=45.28  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=23.9

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHh-CCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~-GVg~I~LvD~  148 (236)
                      .+|+|+| +|.+|..+++.+... ++.=+.++|.
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~   55 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVR   55 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            5789999 899999999988743 4444445564

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.76  E-value=0.13  Score=45.81  Aligned_cols=34  Identities=0%  Similarity=-0.170  Sum_probs=25.7

Q ss_pred             ccceEEEEcCChhHH-HHHHHHHHh-CCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGA-EIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGs-evak~La~~-GVg~I~LvD~  148 (236)
                      +..+|+|||+|.+|. ..+..|... |+.-+.++|.
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~   61 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASR   61 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEES
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            446899999999998 789999886 4443446664

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.75  E-value=0.15  Score=43.34  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=53.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|+|.|+ ||||.++++.|+..|. ++.+++.+.                    .|.+.+.+.|.+..+ .++..+.
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~--------------------~~~~~~~~~l~~~~~-~~~~~~~   68 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDV--------------------TKGHEAVEKLKNSNH-ENVVFHQ   68 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH--------------------HHHHHHHHHHHTTTC-CSEEEEE
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCH--------------------HHHHHHHHHHHhcCC-CceEEEE
Confidence            5578899995 6999999999999998 477766321                    244555666666553 3566666


Q ss_pred             cCCCcc-h--h-------hhcCCCcEEEEcCC
Q psy9587         194 TKVDEI-S--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~-~--~-------~~l~~~DlVI~~~d  215 (236)
                      .++++. .  .       +.+...|++|.+..
T Consensus        69 ~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           69 LDVTDPIATMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             ccCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            666553 2  1       12347899998875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.74  E-value=0.035  Score=50.89  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=31.7

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +...+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r  199 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR  199 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            46678999999999999999999999989999874

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=94.74  E-value=0.09  Score=46.46  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=23.6

Q ss_pred             ceEEEEcCChhHHHHHHHHH-H-hCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNII-L-SGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La-~-~GVg~I~LvD~  148 (236)
                      .+|+|||+|.+|...+..|. . .|+.-+.++|.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~   36 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDV   36 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            46899999999999999998 4 34443345553

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.73  E-value=0.074  Score=47.31  Aligned_cols=34  Identities=18%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      ..+|+|||+|..|...++.|... ++.+|+++|.+
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~  155 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY  155 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc
Confidence            46899999999999999999874 78899998855

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=94.70  E-value=0.08  Score=46.86  Aligned_cols=33  Identities=12%  Similarity=0.095  Sum_probs=25.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      .+|+|+|+|.+|..+++.|... ++.-+.++|.+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~   37 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            4789999999999999999876 44445566754

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=94.67  E-value=0.24  Score=44.17  Aligned_cols=87  Identities=9%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||||.++++.|+..|.. +.++|.+.-....+ .          +  +.+.+++.+....  .++..
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~-Vvl~~r~~~~~~~l-~----------~--~l~~~~~~~~~~g--~~~~~  105 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGAN-IVIAAKTAQPHPKL-L----------G--TIYTAAEEIEAVG--GKALP  105 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSS-C----------C--CHHHHHHHHHHTT--CEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCCE-EEEEECChhhhhhh-H----------H--HHHHHHHHHHhcC--CeEEE
Confidence            567788999995 69999999999999974 88887654333333 1          1  1334455555543  35566


Q ss_pred             EecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      +..++.+..  .       +.+...|++|.+..
T Consensus       106 ~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          106 CIVDVRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665422  1       12347888887754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.66  E-value=0.32  Score=41.20  Aligned_cols=92  Identities=11%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-. .++ ...      .-...+.+...+.+.....  ++..
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-~~~-~~~------~~~~~~~~~~~~~~~~~~~--~~~~   78 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQI-ASV-PYP------LATPEELAATVKLVEDIGS--RIVA   78 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCC-TTC-SSC------CCCHHHHHHHHHHHHHHTC--CEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeccccc-ccc-ccc------ccchHHHHHHHHHHHhcCC--eEEE
Confidence            356678999994 69999999999999987 7777754210 111 000      0112355566666666654  5666


Q ss_pred             EecCCCcch--hhh-------cCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EEF-------VHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~~-------l~~~DlVI~~~d  215 (236)
                      +..++++..  ..+       +...|++|.+..
T Consensus        79 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           79 RQADVRDRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            677776532  222       347899998764

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=94.66  E-value=0.12  Score=45.28  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=25.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|...+..|... |+.-+.++|.+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   37 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF   37 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            4789999999999999999885 44434466643

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.65  E-value=0.18  Score=43.69  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=27.3

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|.| .|++|+.+++.|+..|. +++++|.+
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   54 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNF   54 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            446789998 68999999999999995 57777754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.63  E-value=0.22  Score=41.33  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=27.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r   45 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADL   45 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            3557788998 57999999999999997 4777763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.62  E-value=0.035  Score=48.39  Aligned_cols=33  Identities=18%  Similarity=0.106  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            468999999999999999999996 588888654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.62  E-value=0.12  Score=44.46  Aligned_cols=32  Identities=22%  Similarity=0.067  Sum_probs=26.5

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..+|+|.|+ |++|+.+++.|+..|. +++++|.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   35 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADR   35 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            357899996 8999999999999996 5777664

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.61  E-value=0.04  Score=47.60  Aligned_cols=36  Identities=6%  Similarity=-0.144  Sum_probs=31.7

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++.++|+|+|+||+|..++..|+..| .+++++|.+.
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~~  152 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRTV  152 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECCH
Confidence            45678999999999999999999999 6899988653

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=94.58  E-value=0.092  Score=45.19  Aligned_cols=33  Identities=6%  Similarity=0.009  Sum_probs=26.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEE-EeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVC-LLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~-LvD~D~  150 (236)
                      .+|+|+|||.+|..+++.+...+- .|. ++|.+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~   37 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTP   37 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCc
Confidence            468999999999999999998876 654 467543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.58  E-value=0.04  Score=48.30  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .+|.|||+|.+|+.++.+|+..|. .++++|.+.-.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~   56 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSK   56 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHH
Confidence            579999999999999999999997 68899876543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.58  E-value=0.15  Score=42.19  Aligned_cols=78  Identities=14%  Similarity=0.168  Sum_probs=48.6

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ |++|.++++.|+..|.. +.++|.+.                    .+.+.+.+.+....+  ++..+
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~--~~~~~   65 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINA--------------------DAANHVVDEIQQLGG--QAFAC   65 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCH--------------------HHHHHHHHHHHHhCC--ceEEE
Confidence            45578899984 79999999999999974 77766321                    123344455555443  34455


Q ss_pred             ecCCCcch--hhh-------cCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EEF-------VHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~~-------l~~~DlVI~~~  214 (236)
                      ..++.+..  ...       +...|+||.+.
T Consensus        66 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A   96 (255)
T 1fmc_A           66 RCDITSEQELSALADFAISKLGKVDILVNNA   96 (255)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            55554321  122       23788888765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.57  E-value=0.15  Score=47.94  Aligned_cols=39  Identities=15%  Similarity=0.012  Sum_probs=31.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      -+|+|||+|.+|+.+|..|+..|.. ++++|.|.-....+
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~-V~~~d~~~~~v~~l   47 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHD-VFCLDVDQAKIDIL   47 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            4688999999999999999999974 88998764333344

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.56  E-value=0.14  Score=43.17  Aligned_cols=32  Identities=9%  Similarity=0.004  Sum_probs=26.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         4 k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~   36 (267)
T 3rft_A            4 KRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLS   36 (267)
T ss_dssp             EEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecC
Confidence            5788999 68999999999999985 57777744

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.55  E-value=0.043  Score=47.86  Aligned_cols=37  Identities=19%  Similarity=0.110  Sum_probs=32.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++.++|+|+|+|.+|..+++.|...|+ ++.++|...
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~  188 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARES  188 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            4677899999999999999999999998 799988653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.55  E-value=0.15  Score=44.62  Aligned_cols=81  Identities=12%  Similarity=0.091  Sum_probs=52.1

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||||.++++.|+..|.. +.++|.+.                    .+.+.+.+.+....+..++..+
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~~--------------------~~~~~~~~~l~~~~~~~~~~~~   64 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQ--------------------DSIDKALATLEAEGSGPEVMGV   64 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcCCCCeEEEE
Confidence            35578899995 79999999999999985 76766321                    2444555566665554456666


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      ..++++..  .+       .+...|+||.+..
T Consensus        65 ~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           65 QLDVASREGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            66665421  11       1235677776654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=94.52  E-value=0.12  Score=44.79  Aligned_cols=33  Identities=6%  Similarity=-0.091  Sum_probs=24.2

Q ss_pred             cceEEEEcCChhHHH-HHHHHHH-hCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAE-IAKNIIL-SGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGse-vak~La~-~GVg~I~LvD~  148 (236)
                      ..+|+|||+|.+|.. .+..|.. .|+.-+.++|.
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~   40 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP   40 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECS
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECC
Confidence            467999999999996 8888876 34443446664

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.50  E-value=0.39  Score=40.86  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-....+ ....+.   .-...+.+.+++.+.....  ++..
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~   80 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGV-VDTAIP---ASTPEDLAETADLVKGHNR--RIVT   80 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTB-CCCSSC---CCCHHHHHHHHHHHHTTTC--CEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeccccccccc-cccccc---cCCHHHHHHHHHHHhhcCC--ceEE
Confidence            356678999995 59999999999999986 77777653222111 110000   0112345556666665543  5666


Q ss_pred             EecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      +..++++..  .       +.+...|++|.+..
T Consensus        81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            666666432  1       22347899998754

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=94.48  E-value=0.22  Score=44.99  Aligned_cols=95  Identities=15%  Similarity=0.050  Sum_probs=54.1

Q ss_pred             ccccchhhhhcccCccccccceEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEeeCCcccccCCCCCccccCCCcCC
Q psy9587          97 HTVTLTTLHTNWAGSQSYKIYVYSTGPL-TRVGAEIAKNIILSGV-K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIG  169 (236)
Q Consensus        97 ~~~rydrq~~l~g~~~~lk~~~VlIVG~-GgvGsevak~La~~GV-g-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIG  169 (236)
                      |......|.+--+   ..+..+|.|+|+ |+||..++-.|+...+ +     .|.|+|-.                  -+
T Consensus         8 ~~~~~~~~~~~~~---s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~------------------~~   66 (345)
T 4h7p_A            8 HMGTLEAQTQGPG---SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIE------------------PA   66 (345)
T ss_dssp             -----------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG------------------GG
T ss_pred             ccccccccccCCC---CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCC------------------Cc
Confidence            3444544443332   234568999996 9999999999987654 3     68887721                  12


Q ss_pred             ChHHHHHHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         170 KNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       170 k~Kaea~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..+++..+-.|...............   ...+-++++|+||.+.+
T Consensus        67 ~~~~~Gva~DL~~~~~~~~~~~~~~~---~~~~a~~~advVvi~aG  109 (345)
T 4h7p_A           67 LKALAGVEAELEDCAFPLLDKVVVTA---DPRVAFDGVAIAIMCGA  109 (345)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEEEEES---CHHHHTTTCSEEEECCC
T ss_pred             cccchhhhhhhhhcCccCCCcEEEcC---ChHHHhCCCCEEEECCC
Confidence            23556666777776544444433221   23456899999998875

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.45  E-value=0.23  Score=42.21  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|.+.-....+ ..    ..  -...+.+.+++.+....  .++..
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~-~~----~~--~~~~~~~~~~~~~~~~~--~~~~~   81 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASV-TY----AP--ASPEDLDETARLVEDQG--RKALT   81 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTC-CS----CC--CCHHHHHHHHHHHHTTT--CCEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeccccccccc-cc----cc--cCHHHHHHHHHHHHhcC--CeEEE
Confidence            35668899999 469999999999999985 77777543222222 11    00  12345666666666654  35566


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++++..  .+       .+...|++|.+..
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           82 RVLDVRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665422  12       2347899998753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.44  E-value=0.046  Score=50.44  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=34.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++..+|+|+|+|..|..+++.|+..|+++|+++|.+
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4567899999999999999999999999999999976

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.43  E-value=0.28  Score=41.71  Aligned_cols=81  Identities=11%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC-ceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN-VEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~-v~I~~  191 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+.... .++..
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~~~~~~~~~   67 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNP--------------------DKLAGAVQELEALGANGGAIRY   67 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHTTCCSSCEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHHhCCCCceEEE
Confidence            4567889998 569999999999999985 77766332                    2344445555554332 25555


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++++..  ..       .+...|++|.+..
T Consensus        68 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  100 (281)
T 3svt_A           68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAG  100 (281)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555555421  11       2235677776643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.43  E-value=0.22  Score=41.81  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=27.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVAR   39 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            3557788998 57999999999999997 4777663

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.42  E-value=0.041  Score=47.04  Aligned_cols=36  Identities=14%  Similarity=0.017  Sum_probs=31.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++. +|+|||+|++|..+++.|...|+ +++++|.+.
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~  149 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTP  149 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3566 89999999999999999999998 899988653

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.41  E-value=0.039  Score=48.14  Aligned_cols=34  Identities=6%  Similarity=-0.044  Sum_probs=30.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++|+|+|+||.|..++..|...|+.+|+|++.+
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4679999999999999999999999999998644

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=94.40  E-value=0.097  Score=47.29  Aligned_cols=104  Identities=4%  Similarity=-0.070  Sum_probs=59.3

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC-------C
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP-------N  186 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp-------~  186 (236)
                      ...+|+|.|+ |++|+++++.|+..|. ++++++...-..                 ...+.+.+.+....+       .
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~  129 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADNEE-----------------IAWYKLMTNLNDYFSEETVEMML  129 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSSHH-----------------HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCChH-----------------HHHHHHHHHHHHhcccccccccc
Confidence            4468999995 8999999999977775 455554221100                 112233334433321       1


Q ss_pred             ceEEEEecCCCc-chhhhcCCCcEEEEcCCC--------------HHHHHHHHHHHHHcCCcEEC
Q psy9587         187 VEVTSNETKVDE-ISEEFVHGFDVVIATSCN--------------PNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       187 v~I~~~~~~l~~-~~~~~l~~~DlVI~~~d~--------------~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++..+..++.+ .....+.++|+||.|...              ...-..+.+.|...+..+||
T Consensus       130 ~~v~~v~~Dl~d~~~l~~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~  194 (427)
T 4f6c_A          130 SNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIY  194 (427)
T ss_dssp             TTEEEEEECC---CCCCCSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEeCCCCCcccCCCcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            356666666654 222256789999988642              22334566667665556653

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=94.36  E-value=0.16  Score=45.46  Aligned_cols=24  Identities=21%  Similarity=-0.004  Sum_probs=21.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS  138 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~  138 (236)
                      +..+|.|+|||.+|+.+++.|...
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~   26 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDAS   26 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhc
Confidence            346789999999999999999874

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.35  E-value=0.22  Score=46.31  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=33.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~  251 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSM  251 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4677899999999999999999999999988888854

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.35  E-value=0.085  Score=47.81  Aligned_cols=34  Identities=12%  Similarity=-0.061  Sum_probs=29.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3468999999999999999999999988888773

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.34  E-value=0.11  Score=45.68  Aligned_cols=33  Identities=6%  Similarity=-0.007  Sum_probs=24.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~  148 (236)
                      ..+|+|||+|.+|...+..|... |+.-+.++|.
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~   38 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASR   38 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCS
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeC
Confidence            35789999999999999999885 3333335553

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.32  E-value=0.14  Score=44.68  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHH-HHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEI-AKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsev-ak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|.+|... +..|...|+.-+.++|.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~   34 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTS   34 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCC
Confidence            58999999999998 888887666555677754

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.32  E-value=0.18  Score=43.38  Aligned_cols=30  Identities=13%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (347)
T 1orr_A            3 KLLITGGCGFLGSNLASFALSQGI-DLIVFDN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEeCCCchhHHHHHHHHHhCCC-EEEEEeC
Confidence            588999 68999999999999986 4776663

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.31  E-value=0.22  Score=41.89  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=50.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+..+  ++..+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~--~~~~~   66 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKS--------------------EGAEAVAAAIRQAGG--KAIGL   66 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSH--------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHhcCC--cEEEE
Confidence            4667889999 569999999999999986 66766321                    234555566655543  44555


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~  214 (236)
                      ..++++..  .+       .+...|++|.+.
T Consensus        67 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           67 ECNVTDEQHREAVIKAALDQFGKITVLVNNA   97 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55555421  11       234678888765

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.30  E-value=0.053  Score=47.38  Aligned_cols=37  Identities=19%  Similarity=0.109  Sum_probs=32.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+++.|...|. +++++|.+.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~  190 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSS  190 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            4677899999999999999999999998 799988653

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=94.27  E-value=0.12  Score=47.56  Aligned_cols=98  Identities=12%  Similarity=-0.009  Sum_probs=57.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCceEEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNVEVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v~I~~~  192 (236)
                      +..+|+|||+|.+|...+..|... |+.-+.++|.                    ...|++.+++.+.+.. |.++  .+
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~--------------------~~~~~~~~a~~~~~~g~~~~~--~~   76 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP--------------------DPYMVGRAQEILKKNGKKPAK--VF   76 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS--------------------CHHHHHHHHHHHHHTTCCCCE--EE
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC--------------------CHHHHHHHHHHHHhcCCCCCc--ee
Confidence            446899999999999999888764 3332334442                    2235666666665433 2222  22


Q ss_pred             ecCCCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         193 ETKVDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       193 ~~~l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ....+ .-.++++  +.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        77 ~~~~~-~~~~ll~~~~vD~V~i~tp~~~-h~~~~~~al~aGkhV~~  120 (444)
T 2ixa_A           77 GNGND-DYKNMLKDKNIDAVFVSSPWEW-HHEHGVAAMKAGKIVGM  120 (444)
T ss_dssp             CSSTT-THHHHTTCTTCCEEEECCCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             ccCCC-CHHHHhcCCCCCEEEEcCCcHH-HHHHHHHHHHCCCeEEE
Confidence            21000 1134554  5899988886543 33444556677887764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=94.25  E-value=0.41  Score=40.62  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=55.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.-... .  .     ...-...+.+...+.+.+...  ++..+
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~-~--~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~   76 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDV-V--G-----YPLATADDLAETVALVEKTGR--RCISA   76 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTT-C--S-----SCCCCHHHHHHHHHHHHHTTC--CEEEE
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccc-c--c-----cccccHHHHHHHHHHHHhcCC--eEEEE
Confidence            4667889999 569999999999999986 778775431110 0  0     001122344555555655543  55666


Q ss_pred             ecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      ..++++..  ..       .+...|++|.+..
T Consensus        77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           77 KVDVKDRAALESFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            66665422  12       2347899987753

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=94.25  E-value=0.27  Score=46.27  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             cceEEEEcCChh-HHHHHHHHHHh--CC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         116 IYVYSTGPLTRV-GAEIAKNIILS--GV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       116 ~~~VlIVG~Ggv-Gsevak~La~~--GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      ..+|.|||+|++ |..++..|+..  +.  .+|.|+|-|.-...-+                .+.....+.......+|.
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~----------------~~~~~~~l~~~~~~~~I~   91 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI----------------AGACDVFIREKAPDIEFA   91 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH----------------HHHHHHHHHHHCTTSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH----------------HHHHHHHhccCCCCCEEE
Confidence            357899999998 66678888887  66  5699999543110000                111122223445556666


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      ....     -.+-++++|+||.+...
T Consensus        92 ~t~D-----~~eal~~AD~VViaag~  112 (472)
T 1u8x_X           92 ATTD-----PEEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             EESC-----HHHHHSSCSEEEECCCT
T ss_pred             EECC-----HHHHHcCCCEEEEcCCC
Confidence            5311     12457899999999865

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.23  E-value=0.061  Score=48.82  Aligned_cols=37  Identities=16%  Similarity=0.029  Sum_probs=32.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++..+|+|+|+|++|..+++.+...|. +++++|.+.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~  201 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINI  201 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            4677899999999999999999999999 799998653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.22  E-value=0.25  Score=42.76  Aligned_cols=79  Identities=13%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+....  .++..+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~--~~~~~~   85 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQ--------------------PALEQAVNGLRGQG--FDAHGV   85 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTT--CCEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcC--CceEEE
Confidence            46678999995 68999999999999975 77766321                    23444555565543  345555


Q ss_pred             ecCCCcch--hhh-------cCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EEF-------VHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~~-------l~~~DlVI~~~d  215 (236)
                      ..++++..  .++       +...|++|.+..
T Consensus        86 ~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            55555422  112       236788887753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=94.19  E-value=0.32  Score=39.99  Aligned_cols=32  Identities=13%  Similarity=0.062  Sum_probs=26.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCc------eEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVK------SVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg------~I~LvD~  148 (236)
                      ++|+|.| .|++|.++++.|+..|..      ++.++|.
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r   41 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR   41 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeC
Confidence            4678888 679999999999999985      6777663

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.15  E-value=0.27  Score=40.62  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~   47 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRT   47 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecC
Confidence            46678899995 69999999999999985 7776643

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=94.15  E-value=0.41  Score=41.35  Aligned_cols=97  Identities=7%  Similarity=0.004  Sum_probs=57.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|.| .|.+|+.+++.|+..|. -+++++|...-.. +.   .                  .+.++. .-.++.+..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~---~------------------~~~~~~-~~~~~~~~~   61 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NK---A------------------NLEAIL-GDRVELVVG   61 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CG---G------------------GTGGGC-SSSEEEEEC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-Ch---h------------------HHhhhc-cCCeEEEEC
Confidence            4688999 68999999999999943 2577777532110 00   0                  001111 124555666


Q ss_pred             CCCcch--hhhcCCCcEEEEcCCCH-----------------HHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSCNP-----------------NQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d~~-----------------~~r~~In~~c~~~~ip~I~  236 (236)
                      ++.+..  .+.++++|+||.|....                 ..-..+-+.|...++.+||
T Consensus        62 Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~  122 (348)
T 1oc2_A           62 DIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHH  122 (348)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            665532  45678889999886421                 1123455677766666553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.15  E-value=0.19  Score=42.30  Aligned_cols=35  Identities=23%  Similarity=0.110  Sum_probs=28.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~   40 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRN   40 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4557888999 559999999999999985 7777743

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=94.13  E-value=0.26  Score=37.44  Aligned_cols=89  Identities=10%  Similarity=0.033  Sum_probs=54.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+|+|+|+.|..+++.|... |..-+.++|.|.-   .. +.. +.                      .+.|-.  
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~---~~-g~~-i~----------------------g~pV~g--   53 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRK---KH-KTT-MQ----------------------GITIYR--   53 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGG---GT-TCE-ET----------------------TEEEEC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcc---cC-CCE-ec----------------------CeEEEC--
Confidence            345789999999999999999875 6666778886531   11 111 10                      122221  


Q ss_pred             cCCCcchhhhc--CCCcEEEEcCC--CHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFV--HGFDVVIATSC--NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l--~~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I  235 (236)
                        +++ -.+++  ...|.|+.|..  ....+..+-+.|...++.+.
T Consensus        54 --~~~-l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~   96 (141)
T 3nkl_A           54 --PKY-LERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVL   96 (141)
T ss_dssp             --GGG-HHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred             --HHH-HHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEE
Confidence              111 11222  24677777765  34667788888998888764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.13  E-value=0.072  Score=44.79  Aligned_cols=87  Identities=6%  Similarity=0.133  Sum_probs=51.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|+|.|+ |.+|+.+++.|+..  |. ++++++.+.   +..                 ..    +..  +.  ++.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~---~~~-----------------~~----~~~--~~--~~~~~~   51 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNP---AKA-----------------QA----LAA--QG--ITVRQA   51 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCT---TTC-----------------HH----HHH--TT--CEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcCh---Hhh-----------------hh----hhc--CC--CeEEEc
Confidence            3788996 89999999999987  74 477766431   111                 00    111  12  334455


Q ss_pred             CCCcch--hhhcCCCcEEEEcCCC-----HHHHHHHHHHHHHcCCc
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSCN-----PNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d~-----~~~r~~In~~c~~~~ip  233 (236)
                      ++.+..  .+.++++|+||.+...     ......+-+.|++.+++
T Consensus        52 D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~   97 (286)
T 2zcu_A           52 DYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVK   97 (286)
T ss_dssp             CTTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence            555422  4567788888877642     23345566677776653

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.12  E-value=0.18  Score=41.27  Aligned_cols=34  Identities=12%  Similarity=-0.087  Sum_probs=26.6

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhC-CceEEEeeCC
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSG-VKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~G-Vg~I~LvD~D  149 (236)
                      ..+|+|.| .|++|.++++.|+..| -.++++++.+
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            45789999 6899999999999995 2357776654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.12  E-value=0.042  Score=47.54  Aligned_cols=35  Identities=3%  Similarity=-0.111  Sum_probs=31.0

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+|+||+|..++..|+..| .+++++|.+
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~  151 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT  151 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence            45678999999999999999999999 789998744

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.11  E-value=0.053  Score=47.29  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      .+|+|||+|++|+.++..|+..|. ++++++|.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            478999999999999999999995 479999865

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.11  E-value=0.19  Score=43.84  Aligned_cols=34  Identities=9%  Similarity=-0.194  Sum_probs=27.8

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|.| .|.+|+.+++.|+..|. +++++|.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            346789999 68999999999999996 57777753

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.10  E-value=0.3  Score=41.39  Aligned_cols=34  Identities=15%  Similarity=-0.049  Sum_probs=27.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r   63 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDI   63 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEc
Confidence            4557889998 569999999999999975 777664

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.08  E-value=0.33  Score=39.82  Aligned_cols=77  Identities=25%  Similarity=0.272  Sum_probs=49.1

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+.. ..++..+..+
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~-~~~~~~~~~D   60 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGYA-LALGARSV--------------------DRLEKIAHELMQEQ-GVEVFYHHLD   60 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHH-CCCEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHhhc-CCeEEEEEec
Confidence            5688888 569999999999999976 67766321                    23444555554322 2456666666


Q ss_pred             CCcch--hhhc-------CCCcEEEEcCC
Q psy9587         196 VDEIS--EEFV-------HGFDVVIATSC  215 (236)
Q Consensus       196 l~~~~--~~~l-------~~~DlVI~~~d  215 (236)
                      +++..  .+++       ...|++|.+..
T Consensus        61 ~~~~~~v~~~~~~~~~~~g~id~li~~Ag   89 (235)
T 3l77_A           61 VSKAESVEEFSKKVLERFGDVDVVVANAG   89 (235)
T ss_dssp             TTCHHHHHHHCC-HHHHHSSCSEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            65432  2222       36888887753

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.07  E-value=0.31  Score=40.24  Aligned_cols=86  Identities=10%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .++++|+|+|+-|.+++..|...|..-+.++|++.-.. .+      .                      .+.|-.....
T Consensus        12 ~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~~-~~------~----------------------g~~Vlg~~~~   62 (220)
T 4ea9_A           12 IGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTRR-AV------L----------------------GVPVVGDDLA   62 (220)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC----CB------T----------------------TBCEEESGGG
T ss_pred             CCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCcccC-cC------C----------------------CeeEECCHHH
Confidence            35689999999999999999998888889999764211 12      1                      1122221111


Q ss_pred             CCcchhhhcC-CCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         196 VDEISEEFVH-GFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       196 l~~~~~~~l~-~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      +    .++.+ ..+-++.+..+...|..+.+.+...+..+
T Consensus        63 ~----~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           63 L----PMLREQGLSRLFVAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             H----HHHHHTTCCEEEECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             H----HHhhcccccEEEEecCCHHHHHHHHHHHHhcCCCc
Confidence            1    11221 24556778888999999999999887654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.06  E-value=0.048  Score=47.93  Aligned_cols=32  Identities=16%  Similarity=0.131  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|..|..+|..|++.|+. ++|+|.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~   33 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERN   33 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC-EEEEecC
Confidence            4689999999999999999999996 8888754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.06  E-value=0.22  Score=41.94  Aligned_cols=79  Identities=18%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+.+.+.+..+  ++..+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~--~~~~~   83 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDV--------------------EKLRAVEREIVAAGG--EAESH   83 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTC--EEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHHhCC--ceeEE
Confidence            4667899999 479999999999999986 77766321                    244555666665543  55666


Q ss_pred             ecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         193 ETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      ..++++..  .       +.+...|+||.+..
T Consensus        84 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag  115 (262)
T 3rkr_A           84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG  115 (262)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            66665422  1       12346788887754

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.06  E-value=0.19  Score=41.74  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=26.5

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHH-hCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIIL-SGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~-~GVg~I~LvD~  148 (236)
                      +.++|+|.| .|++|.++++.|+. .|. ++.+++.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r   37 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTAR   37 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeC
Confidence            346788888 57999999999999 897 5777664

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.05  E-value=0.062  Score=49.74  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+...+|+|+|+|..|..+++.|+.+|+++|+++|.+-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45667999999999999999999999999999999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.02  E-value=0.042  Score=49.63  Aligned_cols=32  Identities=16%  Similarity=0.005  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|..|+.++..|+..|. .++++|.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~   61 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQ-KVRLWSYE   61 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            468999999999999999999996 48888865

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=94.02  E-value=0.22  Score=43.87  Aligned_cols=76  Identities=17%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEEE
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVTS  191 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~~  191 (236)
                      +|+|+|+ |.+|+.++..|+..|. .++.|+|-    +.|-              .|++..+..|....    ..+++..
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di----~~~~--------------~~~~~~~~dl~~~~~~~~~~~~i~~   63 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGR----EHSI--------------NKLEGLREDIYDALAGTRSDANIYV   63 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC----GGGH--------------HHHHHHHHHHHHHHTTSCCCCEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC----CCch--------------hhhHHHHHHHHHhHHhcCCCeEEEe
Confidence            5899998 9999999999998886 45888884    1111              13333333444332    2334444


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ....+    .+.++++|+||.+..
T Consensus        64 ~~d~l----~~al~gaD~Vi~~Ag   83 (313)
T 1hye_A           64 ESDEN----LRIIDESDVVIITSG   83 (313)
T ss_dssp             EETTC----GGGGTTCSEEEECCS
T ss_pred             CCcch----HHHhCCCCEEEECCC
Confidence            22111    345789999998864

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=94.01  E-value=0.19  Score=41.60  Aligned_cols=80  Identities=16%  Similarity=0.114  Sum_probs=49.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.+.  .                 .+.+.+.+.+....  .++..+
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~--~-----------------~~~~~~~~~~~~~~--~~~~~~   62 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRKA--P-----------------ANIDETIASMRADG--GDAAFF   62 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC--C-----------------TTHHHHHHHHHHTT--CEEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCCc--h-----------------hhHHHHHHHHHhcC--CceEEE
Confidence            3456788888 579999999999999975 77766431  0                 12333444454433  355566


Q ss_pred             ecCCCcch--hhhc-------CCCcEEEEcCC
Q psy9587         193 ETKVDEIS--EEFV-------HGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~--~~~l-------~~~DlVI~~~d  215 (236)
                      ..++.+..  .+.+       ...|+||.+..
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~Ag   94 (258)
T 3afn_B           63 AADLATSEACQQLVDEFVAKFGGIDVLINNAG   94 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66665422  2222       36888887654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=94.00  E-value=0.086  Score=46.59  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=23.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh-CCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~  148 (236)
                      .+|+|||+|.+|...+..|... |+.-+.++|.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~   35 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDV   35 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            3689999999999999998874 3333345553

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=93.99  E-value=0.42  Score=44.72  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=32.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|.|.||..+++.|...|..-+.+.|.+
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~  268 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT  268 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4677899999999999999999999999888888854

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.98  E-value=0.058  Score=46.88  Aligned_cols=32  Identities=25%  Similarity=0.167  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.+|..|+..|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            569999999999999999999997 58899865

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=93.96  E-value=0.062  Score=50.42  Aligned_cols=93  Identities=8%  Similarity=-0.029  Sum_probs=55.5

Q ss_pred             cceEEEEcCChh--HHHHHHHHHHhC--CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         116 IYVYSTGPLTRV--GAEIAKNIILSG--VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       116 ~~~VlIVG~Ggv--Gsevak~La~~G--Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ..+|.|||+|++  |..++..|+..-  .++|+|+|-|.=....+                 ..+.+.+.+  ...+|+.
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~-----------------~~~~~~l~~--~~~~I~~   65 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKN-----------------EVIGNHSGN--GRWRYEA   65 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHH-----------------HHHHTTSTT--SCEEEEE
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHH-----------------HHHHHHHhc--cCCeEEE
Confidence            357899999997  689998888632  34899999653111101                 111111111  2333332


Q ss_pred             EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK  232 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i  232 (236)
                      .     ....+.++++|+||.+.  +..+.+..=.++.+++|+
T Consensus        66 T-----tD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~  103 (450)
T 3fef_A           66 V-----STLKKALSAADIVIISILPGSLDDMEVDVHLPERCGI  103 (450)
T ss_dssp             E-----SSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTC
T ss_pred             E-----CCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCc
Confidence            2     11245689999999998  566766655556666664

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=93.96  E-value=0.38  Score=40.19  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++++|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+....  .++..+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~--~~~~~~   61 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAA-VAIAARRV--------------------EKLRALGDELTAAG--AKVHVL   61 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTT--CCEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            3456788898 569999999999999975 66766321                    23444555555433  345555


Q ss_pred             ecCCCcch--h-------hhcCCCcEEEEcC
Q psy9587         193 ETKVDEIS--E-------EFVHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~-------~~l~~~DlVI~~~  214 (236)
                      ..++++..  .       +.+...|++|.+.
T Consensus        62 ~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nA   92 (247)
T 2jah_A           62 ELDVADRQGVDAAVASTVEALGGLDILVNNA   92 (247)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55655421  1       1234678888764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.96  E-value=0.29  Score=41.80  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=27.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r   50 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASR   50 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4567889998 569999999999999974 777663

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.95  E-value=0.36  Score=41.56  Aligned_cols=79  Identities=20%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++++|-|+ +|+|.++|+.|+..|.. +.++|.+.                    .+.+.+++.+++...  ++..
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~~--------------------~~~~~~~~~i~~~g~--~~~~   60 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELLE--------------------DRLNQIVQELRGMGK--EVLG   60 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTC--CEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCH--------------------HHHHHHHHHHHhcCC--cEEE
Confidence            467889999995 59999999999999986 77777321                    245556666665543  4455


Q ss_pred             EecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         192 NETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       192 ~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +..++++..         .+.+...|++|.+.
T Consensus        61 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           61 VKADVSKKKDVEEFVRRTFETYSRIDVLCNNA   92 (254)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555554321         22345667777654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.93  E-value=0.31  Score=41.36  Aligned_cols=93  Identities=10%  Similarity=0.070  Sum_probs=57.7

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-..+.+ .+.      .-...+.+.+++.+.....  ++..
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~--~~~~   77 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCV-PYD------PASPDDLSETVRLVEAANR--RIVA   77 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTC-CSC------CCCHHHHHHHHHHHHHTTC--CEEE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccc-ccc------ccCHHHHHHHHHHHHhcCC--eEEE
Confidence            356678899995 69999999999999985 77777543222222 111      1123355556666666544  5556


Q ss_pred             EecCCCcch--h-------hhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--E-------EFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~-------~~l~~~DlVI~~~d  215 (236)
                      +..++++..  .       +.+...|++|.+..
T Consensus        78 ~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           78 AVVDTRDFDRLRKVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665422  1       22356899998753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.93  E-value=0.11  Score=46.11  Aligned_cols=34  Identities=12%  Similarity=-0.115  Sum_probs=29.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  204 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL  204 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3468999999999999999998999988888874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.92  E-value=0.063  Score=48.10  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=30.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3468999999999999999999999988888873

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=93.92  E-value=0.54  Score=40.46  Aligned_cols=94  Identities=9%  Similarity=0.152  Sum_probs=55.7

Q ss_pred             eEEEEc-CChhHHHHHHHHHHh---CC--ceEEEeeCCccc--ccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILS---GV--KSVCLLDSGVVT--KEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~---GV--g~I~LvD~D~Ve--~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I  189 (236)
                      +|+|.| .|.+|+.+++.|+..   |+  .+++++|...-.  ...+                        ..+...-.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~------------------------~~~~~~~~~   57 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL------------------------APVDADPRL   57 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG------------------------GGGTTCTTE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhh------------------------hhcccCCCe
Confidence            478898 689999999999996   53  467777753210  1111                        011111245


Q ss_pred             EEEecCCCcch--hhhcCCCcEEEEcCCCH-----------------HHHHHHHHHHHHcCC-cEE
Q psy9587         190 TSNETKVDEIS--EEFVHGFDVVIATSCNP-----------------NQLIKIDDFCRSKSK-ISL  235 (236)
Q Consensus       190 ~~~~~~l~~~~--~~~l~~~DlVI~~~d~~-----------------~~r~~In~~c~~~~i-p~I  235 (236)
                      +.+..++.+..  .+.+.++|+||.+....                 ..-..+-+.|...++ .+|
T Consensus        58 ~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v  123 (337)
T 1r6d_A           58 RFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV  123 (337)
T ss_dssp             EEEECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            55566665432  34567899999886421                 223455667777765 444

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=93.91  E-value=0.33  Score=45.82  Aligned_cols=94  Identities=11%  Similarity=0.127  Sum_probs=52.2

Q ss_pred             ceEEEEcCChh--HHHHHHHHHHh-C--CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         117 YVYSTGPLTRV--GAEIAKNIILS-G--VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       117 ~~VlIVG~Ggv--Gsevak~La~~-G--Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .+|.|||+|++  |+.++..|+.. +  ..+++|+|-|.-.....                .+.+...+.......+|..
T Consensus         4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~----------------~~~~~~~l~~~~~~~~I~~   67 (480)
T 1obb_A            4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAI----------------LTIAKKYVEEVGADLKFEK   67 (480)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHH----------------HHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHH----------------HHHHHHHhccCCCCcEEEE
Confidence            47899999997  56667788742 3  46799999543110001                0111222223333445554


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCCH--HHHHHHHHHHHHcC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCNP--NQLIKIDDFCRSKS  231 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~~--~~r~~In~~c~~~~  231 (236)
                      ...     -.+-++++|+||.+....  ..+..-.++..+.+
T Consensus        68 ttD-----~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g  104 (480)
T 1obb_A           68 TMN-----LDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYG  104 (480)
T ss_dssp             ESC-----HHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTT
T ss_pred             ECC-----HHHHhCCCCEEEECCCcccccccccccccccccc
Confidence            311     124578999999998653  33333444555554

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.89  E-value=0.21  Score=42.61  Aligned_cols=35  Identities=9%  Similarity=0.139  Sum_probs=28.4

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~-V~~~~r   58 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGAR-ILINGT   58 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            356678999995 69999999999999984 667653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=93.89  E-value=0.6  Score=36.29  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=28.3

Q ss_pred             ccceEEEEcC----ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPL----TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~----GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|||+    |..|..++++|...|.. +..+|+.
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~   50 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPN   50 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTT
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCC
Confidence            4568999999    99999999999999994 6666655

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.88  E-value=0.069  Score=45.18  Aligned_cols=36  Identities=14%  Similarity=0.048  Sum_probs=30.2

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +...+|.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            456789999999999999999999996 588888653

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.86  E-value=0.054  Score=50.74  Aligned_cols=35  Identities=11%  Similarity=0.086  Sum_probs=32.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCC--ceEEEee
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGV--KSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GV--g~I~LvD  147 (236)
                      .++..+|+|+|+|+.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3456789999999999999999999999  8999999

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.86  E-value=0.52  Score=39.50  Aligned_cols=34  Identities=12%  Similarity=0.040  Sum_probs=27.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r   41 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSR   41 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3557788998 569999999999999975 777663

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.84  E-value=0.047  Score=48.21  Aligned_cols=35  Identities=14%  Similarity=0.020  Sum_probs=30.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..+++.+...|.+++..+|.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~  198 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPN  198 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45689999999999999999999999778888754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.84  E-value=0.27  Score=41.92  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=28.3

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASR   59 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46678999995 5999999999999998 5777764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.84  E-value=0.4  Score=42.29  Aligned_cols=88  Identities=11%  Similarity=0.009  Sum_probs=53.4

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|.|||.|++|.. +|+.|...|.. +++.|...-                  .+    ..+.|.+.  .+++.  .+ 
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~-V~~~D~~~~------------------~~----~~~~L~~~--gi~v~--~g-   56 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFE-VSGCDAKMY------------------PP----MSTQLEAL--GIDVY--EG-   56 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCE-EEEEESSCC------------------TT----HHHHHHHT--TCEEE--ES-
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCE-EEEEcCCCC------------------cH----HHHHHHhC--CCEEE--CC-
Confidence            57899999999996 99999999986 788784221                  00    23445554  44443  22 


Q ss_pred             CCcchhhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VDEISEEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~~~~~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..  ...+. .++|+||.+..-+...-. -+.++++|+|++
T Consensus        57 ~~--~~~l~~~~~d~vV~Spgi~~~~p~-~~~a~~~gi~v~   94 (326)
T 3eag_A           57 FD--AAQLDEFKADVYVIGNVAKRGMDV-VEAILNLGLPYI   94 (326)
T ss_dssp             CC--GGGGGSCCCSEEEECTTCCTTCHH-HHHHHHTTCCEE
T ss_pred             CC--HHHcCCCCCCEEEECCCcCCCCHH-HHHHHHcCCcEE
Confidence            11  12233 479999987532211112 234677888875

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.84  E-value=0.34  Score=41.26  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+... .++..+
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~-~~~~~~   83 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSK--------------------ETLQKVVSHCLELGA-ASAHYI   83 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHTC-SEEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHHhCC-CceEEE
Confidence            45578899995 79999999999999974 77766321                    133344555555432 355566


Q ss_pred             ecCCCcch--hhh-------cCCCcEEEEc
Q psy9587         193 ETKVDEIS--EEF-------VHGFDVVIAT  213 (236)
Q Consensus       193 ~~~l~~~~--~~~-------l~~~DlVI~~  213 (236)
                      ..++++..  ..+       +...|+||.+
T Consensus        84 ~~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665421  111       2467888866

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.82  E-value=0.075  Score=41.88  Aligned_cols=32  Identities=22%  Similarity=0.114  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .|+|||.|.+|.++|..|+..|. +++|+|...
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            58899999999999999999998 599998654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.82  E-value=0.064  Score=45.97  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            68999999999999999999996 68888754

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=93.82  E-value=0.42  Score=39.28  Aligned_cols=32  Identities=19%  Similarity=0.043  Sum_probs=26.1

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|.| .|++|.++++.|+..|.. +.++|
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~   36 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNG   36 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            456788898 579999999999999974 66664

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.76  E-value=0.34  Score=40.53  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=27.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   46 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSR   46 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4557788888 56999999999999997 4777664

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=93.74  E-value=0.28  Score=45.81  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             ceEEEEcCChh-HHHHHHHHHH--hCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH---HHHH-HhhCCCc
Q psy9587         117 YVYSTGPLTRV-GAEIAKNIIL--SGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS---EARA-QNLNPNV  187 (236)
Q Consensus       117 ~~VlIVG~Ggv-Gsevak~La~--~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~---~~~L-~~inp~v  187 (236)
                      .+|.|||+|++ |..++..|+.  .+.  .+|+|+|-|.                  |+.|++.+   +..+ ......+
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~------------------~~e~~~~~~~~~~~~~~~~~~~~   69 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE------------------GKEKLEIVGALAKRMVEKAGVPI   69 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG------------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC------------------ChHHHHHHHHHHHHHHhhcCCCc
Confidence            47899999999 8888888887  554  5799999543                  11233332   2222 2344455


Q ss_pred             eEEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         188 EVTSNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       188 ~I~~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      +|.....     -.+-++++|+||.+...
T Consensus        70 ~i~~t~D-----~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           70 EIHLTLD-----RRRALDGADFVTTQFRV   93 (450)
T ss_dssp             EEEEESC-----HHHHHTTCSEEEECCCT
T ss_pred             EEEEeCC-----HHHHhCCCCEEEEcCCC
Confidence            6655311     13457899999999864

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=93.70  E-value=0.3  Score=40.10  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=27.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r   39 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGT   39 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557788998 579999999999999974 777663

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.69  E-value=0.091  Score=47.39  Aligned_cols=36  Identities=22%  Similarity=0.087  Sum_probs=32.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++..+|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~  198 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVN  198 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            4667899999999999999999999999 79998864

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.69  E-value=0.33  Score=41.97  Aligned_cols=31  Identities=10%  Similarity=0.118  Sum_probs=25.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   34 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            4688998 58999999999999996 4777764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=93.66  E-value=0.25  Score=41.43  Aligned_cols=64  Identities=9%  Similarity=0.092  Sum_probs=45.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHH---hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIIL---SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~---~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I  189 (236)
                      ++.++|+|.| .||+|.++++.|+.   .|.. +.++|.+.                    .+.+.+++.+.+.++..++
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~~~~~~   62 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSE--------------------SMLRQLKEELGAQQPDLKV   62 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCH--------------------HHHHHHHHHHHHHCTTSEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCe-EEEEeCCH--------------------HHHHHHHHHHHhhCCCCeE
Confidence            4567888888 56999999999998   7874 66666321                    2445566677777666677


Q ss_pred             EEEecCCCc
Q psy9587         190 TSNETKVDE  198 (236)
Q Consensus       190 ~~~~~~l~~  198 (236)
                      ..+..++++
T Consensus        63 ~~~~~Dv~~   71 (259)
T 1oaa_A           63 VLAAADLGT   71 (259)
T ss_dssp             EEEECCTTS
T ss_pred             EEEecCCCC
Confidence            777777765

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=93.65  E-value=0.29  Score=43.42  Aligned_cols=79  Identities=8%  Similarity=-0.011  Sum_probs=47.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCce
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVE  188 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~  188 (236)
                      .+|+|+|+ |.+|+.++..|+..|..      +|+++|.+.=   +.             ..|++..+..|... .+.. 
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~---~~-------------~~~~~g~~~dl~~~~~~~~-   68 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNE---KA-------------QKALQGVMMEIDDCAFPLL-   68 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCH---HH-------------HHHHHHHHHHHHTTTCTTE-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCc---cc-------------cccchhhHHHHhhhccccc-
Confidence            47899997 99999999999998873      7888874300   00             12333344445543 2321 


Q ss_pred             EEEEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         189 VTSNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       189 I~~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .....   .....+.++++|+||.+..
T Consensus        69 ~~i~~---~~~~~~al~~aD~Vi~~ag   92 (329)
T 1b8p_A           69 AGMTA---HADPMTAFKDADVALLVGA   92 (329)
T ss_dssp             EEEEE---ESSHHHHTTTCSEEEECCC
T ss_pred             CcEEE---ecCcHHHhCCCCEEEEeCC
Confidence            11111   1122456889999998764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.63  E-value=0.31  Score=45.44  Aligned_cols=32  Identities=16%  Similarity=0.271  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            468999999999999999999998 48888754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.63  E-value=0.061  Score=46.81  Aligned_cols=31  Identities=16%  Similarity=0.115  Sum_probs=27.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .=|+|||+|..|+.+|..|++.|+. ++|+|.
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er   35 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGLK-TLMIEK   35 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            3489999999999999999999996 778874

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=93.60  E-value=0.57  Score=43.82  Aligned_cols=81  Identities=16%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|.| .|++|.++++.|+..|..++.+++...-.                 .++.+.+.+.|....  .++..+..
T Consensus       226 ~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~-----------------~~~~~~l~~~l~~~g--~~v~~~~~  286 (486)
T 2fr1_A          226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD-----------------ADGAGELVAELEALG--ARTTVAAC  286 (486)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG-----------------STTHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCC-----------------cHHHHHHHHHHHhcC--CEEEEEEe
Confidence            46788888 78999999999999999989988744311                 012344555565543  45666666


Q ss_pred             CCCcch--hhhcC------CCcEEEEcCC
Q psy9587         195 KVDEIS--EEFVH------GFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~--~~~l~------~~DlVI~~~d  215 (236)
                      ++.+..  ...++      ..|+||.+..
T Consensus       287 Dv~d~~~v~~~~~~i~~~g~ld~VIh~AG  315 (486)
T 2fr1_A          287 DVTDRESVRELLGGIGDDVPLSAVFHAAA  315 (486)
T ss_dssp             CTTCHHHHHHHHHTSCTTSCEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHhcCCCcEEEECCc
Confidence            665432  23333      3488887753

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.58  E-value=0.25  Score=42.16  Aligned_cols=34  Identities=12%  Similarity=0.066  Sum_probs=27.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r   58 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASR   58 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557889998 569999999999999975 777763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.57  E-value=0.074  Score=46.72  Aligned_cols=33  Identities=9%  Similarity=0.004  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|+|+|++|+.++..|+..|. .++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            368999999999999999999995 688888664

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.57  E-value=0.37  Score=45.11  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=57.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH-H-----------
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA-Q-----------  181 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L-~-----------  181 (236)
                      +..+|.|||||.+|..++..+... |+.-..+.|.+                    ..|++.+++++ .           
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~--------------------~era~~~a~~~yG~~~~~~~~~~~   81 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARR--------------------LPNTFKAIRTAYGDEENAREATTE   81 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSS--------------------THHHHHHHHHHHSSSTTEEECSSH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCC--------------------HHHHHHHHHHhcCCccccccccch
Confidence            446899999999999999887642 33333344432                    22333333222 1           


Q ss_pred             ----h-hCCCceEEEEecCCCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         182 ----N-LNPNVEVTSNETKVDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       182 ----~-inp~v~I~~~~~~l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                          + +.+. .+..+     ..-.+++.  +.|+|++|+.+...-..+...|.+.|+.+++
T Consensus        82 ~~i~~a~~~g-~~~v~-----~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~  137 (446)
T 3upl_A           82 SAMTRAIEAG-KIAVT-----DDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM  137 (446)
T ss_dssp             HHHHHHHHTT-CEEEE-----SCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhhhhhhccC-CceEE-----CCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe
Confidence                0 0000 11111     11234444  6899999998887777888889999998873

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.56  E-value=0.35  Score=41.21  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+....  .++..+.
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~--~~~~~~~   59 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQ--------------------ARIEAIATEIRDAG--GTALAQV   59 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSH--------------------HHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            3467889995 69999999999999986 66766321                    23445555665543  3455555


Q ss_pred             cCCCcch--h-------hhcCCCcEEEEcC
Q psy9587         194 TKVDEIS--E-------EFVHGFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~--~-------~~l~~~DlVI~~~  214 (236)
                      .++++..  .       +.+...|++|.+.
T Consensus        60 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA   89 (264)
T 3tfo_A           60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNA   89 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            5555421  1       1234678888765

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.55  E-value=0.18  Score=42.18  Aligned_cols=32  Identities=19%  Similarity=0.002  Sum_probs=25.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++|+|.|+ |++|+.+++.|+..|. +++++|.+
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH-EVRLSDIV   35 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE-EEEECCSS
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            36889996 8999999999999884 57776643

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.55  E-value=0.16  Score=44.56  Aligned_cols=34  Identities=18%  Similarity=0.045  Sum_probs=30.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|...+..+...|...+..+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            4568999999999999999999999999888874

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=93.54  E-value=0.4  Score=41.17  Aligned_cols=31  Identities=16%  Similarity=0.149  Sum_probs=25.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      +|+|.|+ |.+|+.+++.|+.. |. +++++|..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIG   34 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            5789996 89999999999998 65 57777753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.53  E-value=0.46  Score=40.41  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=27.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   54 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLR-VFVCAR   54 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3556788898 569999999999999975 777663

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.52  E-value=0.043  Score=48.62  Aligned_cols=35  Identities=11%  Similarity=-0.079  Sum_probs=30.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..++..+...|.+++..+|.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~  200 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSR  200 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            34689999999999999999999999888888743

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.52  E-value=0.46  Score=40.96  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCC------ceEEEeeCC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGV------KSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GV------g~I~LvD~D  149 (236)
                      +..+|+|.| .|++|+.+++.|+..|.      .+++++|.+
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            445789999 68999999999999993      567777743

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=93.51  E-value=0.37  Score=41.93  Aligned_cols=35  Identities=3%  Similarity=-0.176  Sum_probs=25.2

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~D~  150 (236)
                      ..+|+|||+|.+|.. ++..|... |+.-+.++|.+.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~   41 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR   41 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCH
Confidence            357899999999996 88888753 444344767543

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.50  E-value=0.18  Score=42.66  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|...-                 ...+.+.+++.+....  .++..
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~-----------------~~~~~~~~~~~~~~~~--~~~~~   67 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQAK-----------------DSDTANKLKDELEDQG--AKVAL   67 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCGG-----------------GHHHHHHHHHHHHTTT--CEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCcc-----------------CHHHHHHHHHHHHhcC--CcEEE
Confidence            346678899994 69999999999999986 556553211                 1124455566665543  35666


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++++..  ..       .+...|++|.+..
T Consensus        68 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           68 YQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVG  100 (262)
T ss_dssp             EECCCCSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665422  11       2346788887654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.49  E-value=0.46  Score=40.63  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=27.9

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~   60 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFD-IAITG   60 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEe
Confidence            346678899995 69999999999999985 66666

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.49  E-value=0.084  Score=44.46  Aligned_cols=32  Identities=13%  Similarity=0.091  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|.+|+.++..|+..|...++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            58899999999999999999995568888854

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.49  E-value=0.2  Score=42.12  Aligned_cols=34  Identities=21%  Similarity=0.146  Sum_probs=27.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            3557788998 56999999999999997 4777664

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.47  E-value=0.43  Score=40.22  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=28.2

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   43 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAAR   43 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            46678899995 58999999999999986 677664

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=93.46  E-value=0.054  Score=47.04  Aligned_cols=34  Identities=6%  Similarity=-0.075  Sum_probs=30.1

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|+|+||+|..++..|+..|  +++++|.+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~  159 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRT  159 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECC
Confidence            45678999999999999999999999  89998754

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=93.46  E-value=0.26  Score=46.90  Aligned_cols=61  Identities=10%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             ccCccccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHH
Q psy9587         108 WAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEA  178 (236)
Q Consensus       108 ~g~~~~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~  178 (236)
                      +|....++.++|+|-|.|-||..+|+.|...|..-+.+.|.+          ..++.++.+-..+...+++
T Consensus       236 ~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~----------G~iyd~~Gid~~~l~~~k~  296 (501)
T 3mw9_A          236 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESD----------GSIWNPDGIDPKELEDFKL  296 (501)
T ss_dssp             TTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS----------CEEECTTCCCHHHHHHHHH
T ss_pred             cCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC----------ceEECCCCCCHHHHHHHHH
Confidence            343334688999999999999999999999999988888833          3355555555444444443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.45  E-value=0.081  Score=47.17  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=29.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~  223 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI  223 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3468999999999999999998999988888774

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.44  E-value=0.1  Score=49.31  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEecC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~~  195 (236)
                      .+|.|||+|..|+.+|.+|+..|. +++++|.+.-....+ ....... ..+  .-+..+.+.+..+ .+++-+...+..
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l-~~~g~~g-~~i--~~~~s~~e~v~~l~~aDvVil~Vp~~   79 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDF-LANEAKG-TKV--VGAQSLKEMVSKLKKPRRIILLVKAG   79 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHH-HHTTTTT-SSC--EECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HhcccCC-Cce--eccCCHHHHHhhccCCCEEEEecCCh
Confidence            468999999999999999999997 588888764332222 1110000 000  0001122222222 234333333332


Q ss_pred             -CCc----chhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEE
Q psy9587         196 -VDE----ISEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 -l~~----~~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I  235 (236)
                       ..+    .-...++.-++||++... +.....+.+.+...++.|+
T Consensus        80 ~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fv  125 (484)
T 4gwg_A           80 QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFV  125 (484)
T ss_dssp             HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccc
Confidence             111    112345667899988754 4455566677777777654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=93.44  E-value=0.23  Score=42.56  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r   57 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF   57 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567889998 56999999999999998 4777664

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.43  E-value=0.44  Score=40.06  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDM   39 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3557889998 569999999999999975 667663

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.43  E-value=0.38  Score=41.28  Aligned_cols=36  Identities=19%  Similarity=0.081  Sum_probs=28.0

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~   61 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVT-VGALGRT   61 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            34567889999 469999999999999984 7777743

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.42  E-value=0.32  Score=41.19  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=28.3

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   52 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGAR-LVLSGR   52 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            45678899994 69999999999999986 777664

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=93.41  E-value=0.55  Score=40.95  Aligned_cols=92  Identities=10%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|.+.- ..++ ..   . .  -...+.+.+.+.+.+..  .++..
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~-~~~~-~~---~-~--~~~~~~~~~~~~~~~~~--~~~~~  111 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLCRQ-QPNL-DY---A-Q--GSPEELKETVRLVEEQG--RRIIA  111 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECCCC-CTTC-CS---C-C--CCHHHHHHHHHHHHHTT--CCEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEecccc-cccc-cc---c-c--cCHHHHHHHHHHHHhcC--CeEEE
Confidence            35667889998 469999999999999986 667665431 1122 10   0 0  11234455555565554  35666


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++++..  ..       .+...|++|.+..
T Consensus       112 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          112 RQADVRDLASLQAVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665422  12       2347899998753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.41  E-value=0.54  Score=39.79  Aligned_cols=34  Identities=18%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r   53 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASR   53 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557889998 569999999999999975 777663

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.41  E-value=0.19  Score=44.35  Aligned_cols=33  Identities=9%  Similarity=-0.209  Sum_probs=28.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..+++.+...|.. +..+|.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~  200 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTAR  200 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcC
Confidence            346899999999999999999899987 777763

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.37  E-value=0.07  Score=47.16  Aligned_cols=34  Identities=12%  Similarity=-0.120  Sum_probs=29.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..+++.+...|.+++..+|.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~  200 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEP  200 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4568999999999999999999999977887774

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.37  E-value=0.5  Score=40.27  Aligned_cols=80  Identities=19%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|...                   ..+.+.+++.+.+...  ++..
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~-------------------~~~~~~~~~~l~~~~~--~~~~   85 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNA-------------------AERAQAVVSEIEQAGG--RAVA   85 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC-------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            356678999995 69999999999999986 55554211                   1234455555655443  4445


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATS  214 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~  214 (236)
                      +..++++..  ..       .+...|++|.+.
T Consensus        86 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (271)
T 3v2g_A           86 IRADNRDAEAIEQAIRETVEALGGLDILVNSA  117 (271)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            555554321  11       223678888765

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=93.35  E-value=0.13  Score=46.19  Aligned_cols=77  Identities=14%  Similarity=0.046  Sum_probs=52.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCC-ce-----EEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCce
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGV-KS-----VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNVE  188 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GV-g~-----I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v~  188 (236)
                      .+|+|+| +|.||+.++..|+..|+ ++     |.|+|-+.                  .+.|++..+..|.... |.+.
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~------------------~~~~~~g~a~DL~~~~~~~~~   65 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP------------------MMGVLDGVLMELQDCALPLLK   65 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG------------------GHHHHHHHHHHHHHTCCTTEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCC------------------ccccchhhHhhhHhhhhcccC
Confidence            4789999 89999999999998887 45     88888321                  1135667777787753 5431


Q ss_pred             EEEEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         189 VTSNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       189 I~~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                        ...  ......+-++++|+||.+..
T Consensus        66 --~~~--~~~~~~~~~~daDvVvitAg   88 (333)
T 5mdh_A           66 --DVI--ATDKEEIAFKDLDVAILVGS   88 (333)
T ss_dssp             --EEE--EESCHHHHTTTCSEEEECCS
T ss_pred             --CEE--EcCCcHHHhCCCCEEEEeCC
Confidence              111  11223456889999998764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=93.35  E-value=0.11  Score=45.76  Aligned_cols=37  Identities=11%  Similarity=-0.016  Sum_probs=32.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|.. +..+|...
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~  155 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMR-VIAYTRSS  155 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSC
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcE-EEEEeccc
Confidence            46778999999999999999999999985 77777653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.33  E-value=0.64  Score=39.35  Aligned_cols=34  Identities=15%  Similarity=0.059  Sum_probs=27.8

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   53 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSR   53 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557888998 579999999999999975 777664

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.33  E-value=0.23  Score=42.63  Aligned_cols=35  Identities=14%  Similarity=0.077  Sum_probs=28.5

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~   41 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARN   41 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            45678899985 69999999999999986 7776643

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.32  E-value=0.24  Score=41.73  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=26.7

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDW   39 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEEC
Confidence            446788998 569999999999999975 667663

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.30  E-value=0.33  Score=41.41  Aligned_cols=35  Identities=17%  Similarity=0.084  Sum_probs=28.5

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   60 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAM-VIGTAT   60 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            35667889998 469999999999999984 666664

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=93.27  E-value=0.3  Score=40.60  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=28.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~   45 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLP   45 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4557888998 569999999999999975 7776643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.27  E-value=0.075  Score=46.53  Aligned_cols=33  Identities=15%  Similarity=-0.028  Sum_probs=28.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|+|+|++|+.++..|+..|. .++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            368999999999999999999996 588888664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.23  E-value=0.097  Score=47.71  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+|.+|..+|+.|...|.. +.+.|.|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            46778999999999999999999999995 6688854

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.23  E-value=0.18  Score=43.22  Aligned_cols=35  Identities=20%  Similarity=0.155  Sum_probs=28.8

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   65 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAH-VILHGV   65 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcC
Confidence            356678999995 69999999999999985 777664

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.23  E-value=0.099  Score=47.04  Aligned_cols=35  Identities=26%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++..+|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~  199 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN  199 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            455799999999999999999999999 89998854

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=93.22  E-value=0.46  Score=39.46  Aligned_cols=79  Identities=18%  Similarity=0.137  Sum_probs=48.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|..          .         ..+.+.+.+.+.....  ++..+
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~----------~---------~~~~~~~~~~l~~~~~--~~~~~   62 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRS----------K---------EDEANSVLEEIKKVGG--EAIAV   62 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS----------C---------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCC----------C---------hHHHHHHHHHHHhcCC--ceEEE
Confidence            3556788888 679999999999999975 6666631          0         1233444555554432  45555


Q ss_pred             ecCCCcch--hhh-------cCCCcEEEEcC
Q psy9587         193 ETKVDEIS--EEF-------VHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--~~~-------l~~~DlVI~~~  214 (236)
                      ..++++..  .+.       +...|+||.+.
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   93 (261)
T 1gee_A           63 KGDVTVESDVINLVQSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55555421  122       23678888764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=93.21  E-value=0.16  Score=45.27  Aligned_cols=35  Identities=11%  Similarity=-0.013  Sum_probs=25.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      +..+|+|||+|.+|...+..|... |+.-+.++|.+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   39 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL   39 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            346799999999999999988876 44433455643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.20  E-value=0.089  Score=47.17  Aligned_cols=34  Identities=15%  Similarity=-0.027  Sum_probs=30.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  215 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTR  215 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3468999999999999999999999988888874

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.19  E-value=0.26  Score=41.42  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=28.6

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~   39 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRT   39 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45678899995 69999999999999985 7777643

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=93.18  E-value=0.18  Score=42.64  Aligned_cols=33  Identities=21%  Similarity=0.084  Sum_probs=26.3

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|+|.| .|.+|+++++.|+..|. +++++|.+
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            36788888 58999999999999884 57776643

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.18  E-value=0.41  Score=40.04  Aligned_cols=35  Identities=17%  Similarity=0.124  Sum_probs=28.6

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~   39 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDIN   39 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            46678999995 69999999999999985 7776643

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.17  E-value=0.16  Score=43.00  Aligned_cols=81  Identities=16%  Similarity=0.096  Sum_probs=50.1

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +++.++|+|.|+ ||+|.++++.|+..|.. +.+++.+.                   ..+.+.+++.+.+...  ++..
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~--~~~~   83 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRSN-------------------AEVADALKNELEEKGY--KAAV   83 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC-------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCC-------------------HHHHHHHHHHHHhcCC--ceEE
Confidence            456678999995 69999999999999986 66655321                   1234445555555543  4455


Q ss_pred             EecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      +..++.+..  ..       .+...|++|.+..
T Consensus        84 ~~~D~~~~~~v~~~~~~~~~~~g~id~li~nAg  116 (271)
T 4iin_A           84 IKFDAASESDFIEAIQTIVQSDGGLSYLVNNAG  116 (271)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            555554321  11       2236788887653

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.17  E-value=0.56  Score=39.18  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=25.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   34 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFA-VAIADY   34 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            5678888 569999999999999974 777663

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.17  E-value=0.35  Score=45.12  Aligned_cols=39  Identities=15%  Similarity=-0.048  Sum_probs=33.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      .++.|||+|.+|..+|.+|+..|.. ++++|.|.-....|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~-V~~~D~~~~kv~~l   47 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHE-VVCVDKDARKIELL   47 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4688999999999999999999974 88888776555556

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.17  E-value=0.44  Score=40.63  Aligned_cols=77  Identities=9%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.++|.+.                    .+.+.+++.+.+...  ++..+.
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~--------------------~~~~~~~~~l~~~~~--~~~~~~   79 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDA--------------------KNVSAAVDGLRAAGH--DVDGSS   79 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHTTTC--CEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHhcCC--cEEEEE
Confidence            456788999 469999999999999986 66666321                    234455555655433  455555


Q ss_pred             cCCCcch--h-------hhcCCCcEEEEcC
Q psy9587         194 TKVDEIS--E-------EFVHGFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~--~-------~~l~~~DlVI~~~  214 (236)
                      .++++..  .       +.+...|++|.+.
T Consensus        80 ~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA  109 (279)
T 3sju_A           80 CDVTSTDEVHAAVAAAVERFGPIGILVNSA  109 (279)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            5555421  1       1234678887765

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=93.15  E-value=0.73  Score=39.25  Aligned_cols=34  Identities=18%  Similarity=0.071  Sum_probs=28.4

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~   62 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAH-VLAWG   62 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEc
Confidence            45678899999 469999999999999985 66766

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.15  E-value=0.38  Score=40.11  Aligned_cols=34  Identities=21%  Similarity=0.025  Sum_probs=27.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r   53 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYG   53 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            3556789998 579999999999999974 666653

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.14  E-value=0.09  Score=46.13  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      ..|+|||+|.+|..+|..|++.|. +++|+|.+.+-
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            578999999999999999999998 59999976543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=93.12  E-value=0.11  Score=46.51  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=32.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|...
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~  170 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGMH-VIGVNTTG  170 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCCE-EEEECCCc
Confidence            57788999999999999999999999984 77778653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=93.11  E-value=0.39  Score=42.06  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=25.3

Q ss_pred             cceEEEEcCChhHHHHHHHHH-H-hCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNII-L-SGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La-~-~GVg~I~LvD~D  149 (236)
                      ..+|+|||+|.+|...+..|. . .|+.-+.++|.+
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~   43 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD   43 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            357899999999999999987 4 354444566643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=93.10  E-value=0.098  Score=45.88  Aligned_cols=35  Identities=17%  Similarity=0.031  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      ..|+|||+|.+|+.+|..|++.|. +++|+|.+.+-
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            468999999999999999999997 59999976543

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.09  E-value=0.07  Score=46.31  Aligned_cols=31  Identities=19%  Similarity=0.044  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|++|+.++..|+..|. .++++|.+
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            68999999999999999999996 68888866

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.09  E-value=0.32  Score=39.75  Aligned_cols=34  Identities=3%  Similarity=-0.009  Sum_probs=27.8

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      .++|+|.| .|++|.++++.|+..|. .++.++|.+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            45788888 57999999999999995 568888754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.09  E-value=0.075  Score=47.01  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.++..|+..|. .++++|.+
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGE-AINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh
Confidence            468999999999999999999996 58888863

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.08  E-value=0.096  Score=47.17  Aligned_cols=35  Identities=20%  Similarity=0.099  Sum_probs=31.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ..|+|||+|..|..+|..|++.|..+++|+|.+..
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            46899999999999999999999967999998765

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.07  E-value=0.3  Score=41.73  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=28.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   64 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAAR   64 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4567889999 569999999999999985 777764

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=93.06  E-value=0.15  Score=44.45  Aligned_cols=34  Identities=21%  Similarity=0.055  Sum_probs=27.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~  150 (236)
                      .+|+|||+|.+|...++.|... |+.-+.++|.+.
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~   45 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNP   45 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCH
Confidence            5789999999999999999986 555556888664

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.06  E-value=0.098  Score=43.38  Aligned_cols=32  Identities=13%  Similarity=0.025  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.+++.|+..|. +++++|.+
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578999999999999999999997 58888865

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=93.06  E-value=0.46  Score=39.51  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=25.6

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~   35 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYN-VAVNY   35 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEe
Confidence            346788888 569999999999999986 55545

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=93.01  E-value=0.13  Score=46.42  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|...
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~~-V~~~d~~~  181 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGAK-VIAYDVAY  181 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCCE-EEEECCCh
Confidence            56788999999999999999999999984 77788654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.99  E-value=0.075  Score=48.04  Aligned_cols=29  Identities=14%  Similarity=-0.013  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHHHHHHHH-hCCceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIIL-SGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~-~GVg~I~LvD  147 (236)
                      +|+|||+|.+|+.++..|+. .|. .++++|
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            68999999999999999988 475 588887

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=92.95  E-value=0.37  Score=44.52  Aligned_cols=116  Identities=8%  Similarity=0.005  Sum_probs=62.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      .+..+|+|.| .|++|+++++.|+..+-  .++.+++...-....+ .+  +...-.-|.+.   ..+.+.... .-+++
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~-~~--l~~~~~~~~~~---~~~~~~~~~-~~~v~  143 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR-RR--LEKTFDSGDPE---LLRHFKELA-ADRLE  143 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHH-HH--HHGGGCSSCHH---HHHHHHHHH-TTTEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHH-HH--HHHHHHhcchh---hhhhhhhhc-cCceE
Confidence            3557899999 58999999999999831  3577766432211111 00  00000001111   111111111 13566


Q ss_pred             EEecCCCcc-------h-hhhcCCCcEEEEcCC-------------CHHHHHHHHHHHHHcCC-cEEC
Q psy9587         191 SNETKVDEI-------S-EEFVHGFDVVIATSC-------------NPNQLIKIDDFCRSKSK-ISLF  236 (236)
Q Consensus       191 ~~~~~l~~~-------~-~~~l~~~DlVI~~~d-------------~~~~r~~In~~c~~~~i-p~I~  236 (236)
                      .+..++.+.       . ...++++|+||.|..             |...-..+-+.|.+.++ .|||
T Consensus       144 ~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~  211 (478)
T 4dqv_A          144 VVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTY  211 (478)
T ss_dssp             EEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEE
T ss_pred             EEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            666666521       1 345678999998753             23445567777877775 5553

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=92.95  E-value=0.56  Score=40.23  Aligned_cols=33  Identities=12%  Similarity=0.054  Sum_probs=26.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~D  149 (236)
                      .+|+|.| .|++|+.+++.|+..|. -+++++|..
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~   38 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL   38 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            3589999 58999999999999984 367777753

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=92.95  E-value=0.22  Score=46.81  Aligned_cols=77  Identities=21%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             eEEEEcCChhHHH--HHHHHHH----hC-CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         118 VYSTGPLTRVGAE--IAKNIIL----SG-VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       118 ~VlIVG~GgvGse--vak~La~----~G-Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      +|.|||+|++|..  ++..|+.    .| ..+|.|+|-|.   ..+ .            -.+..+.......+..++|+
T Consensus         2 KI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~---~rl-~------------~~~~~~~~~~~~~~~~~~i~   65 (477)
T 3u95_A            2 KISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHE---RRL-N------------ASYILARKYVEELNSPVKVV   65 (477)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCH---HHH-H------------HHHHHHHHHHHHHTCCCEEE
T ss_pred             EEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCH---HHH-H------------HHHHHHHHHHHHcCCCeEEE
Confidence            5789999998754  3333442    33 35799988543   222 0            11233444455667777777


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ....     -.+-++++|+||.+..
T Consensus        66 ~t~d-----~~eAl~gAD~Vi~~~g   85 (477)
T 3u95_A           66 KTES-----LDEAIEGADFIINTAY   85 (477)
T ss_dssp             EESC-----HHHHHTTCSEEEECCC
T ss_pred             EeCC-----HHHHhCCCCEEEECcc
Confidence            6432     2356799999998864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=92.94  E-value=0.16  Score=44.69  Aligned_cols=31  Identities=6%  Similarity=0.009  Sum_probs=25.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| .|.+|+.+++.|+..|.-+++.+|.
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~   33 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHR   33 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence            588999 6899999999999999755666553

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.93  E-value=0.18  Score=49.01  Aligned_cols=35  Identities=20%  Similarity=0.129  Sum_probs=30.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.+.|+|||.|..|...|..|++.|.. ++|+|...
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~-V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYD-VVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            346899999999999999999999975 99998643

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=92.92  E-value=0.56  Score=41.33  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             eEEEEc-CChhHHHHHHHHH-HhCCceEEEeeCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNII-LSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La-~~GVg~I~LvD~D  149 (236)
                      +|+|.| .|.+|+.+++.|+ ..|. +++++|..
T Consensus         4 ~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~   36 (397)
T 1gy8_A            4 RVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSL   36 (397)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecC
Confidence            688998 5899999999999 9886 57777643

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=92.92  E-value=0.074  Score=47.26  Aligned_cols=88  Identities=7%  Similarity=0.066  Sum_probs=47.8

Q ss_pred             ceEEEEcCChhHH-HHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLTRVGA-EIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~GgvGs-evak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|||||.+|. ..+..|... |+.-..++|.+      .                ++.++++...  +.+.  .+. 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~------~----------------~~~~a~~~~~--~~~~--~~~-   55 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH------V----------------NEKAAAPFKE--KGVN--FTA-   55 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT------C----------------CHHHHHHHHT--TTCE--EES-
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC------H----------------HHHHHHhhCC--CCCe--EEC-
Confidence            4789999999998 567766653 44434466644      1                1122222211  2322  111 


Q ss_pred             CCCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .+    .+++.  +.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        56 ~~----~~ll~~~~~D~V~i~tp~~~-h~~~~~~al~aGk~Vl~   94 (349)
T 3i23_A           56 DL----NELLTDPEIELITICTPAHT-HYDLAKQAILAGKSVIV   94 (349)
T ss_dssp             CT----HHHHSCTTCCEEEECSCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             CH----HHHhcCCCCCEEEEeCCcHH-HHHHHHHHHHcCCEEEE
Confidence            11    23443  4788888886533 34444556677777763

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=92.92  E-value=0.27  Score=41.31  Aligned_cols=30  Identities=7%  Similarity=0.082  Sum_probs=25.3

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| .|.+|+.+++.|+..|. +++.++.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            689999 58999999999999885 5777665

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=92.91  E-value=0.18  Score=44.54  Aligned_cols=24  Identities=13%  Similarity=-0.247  Sum_probs=18.7

Q ss_pred             cccceEEEEcCChhHHHHHHHHHH
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIIL  137 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~  137 (236)
                      .|..+|+|||||.+|..-+..+..
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~   46 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNA   46 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTT
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHh
Confidence            356789999999999877776643

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=92.88  E-value=0.43  Score=39.82  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=27.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   46 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   46 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3557788898 57999999999999997 4777663

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=92.88  E-value=0.21  Score=43.82  Aligned_cols=88  Identities=13%  Similarity=0.132  Sum_probs=49.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc---eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK---SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg---~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+|+|||+|.+|...+..|...+-.   -+.++|.+                    ..|++.++++..    -.+  .  
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~--------------------~~~a~~~a~~~~----~~~--~--   54 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARD--------------------LSRAKEFAQKHD----IPK--A--   54 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSS--------------------HHHHHHHHHHHT----CSC--E--
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCC--------------------HHHHHHHHHHcC----CCc--c--
Confidence            4689999999999999988765422   23333422                    223444443321    101  1  


Q ss_pred             cCCCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         194 TKVDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       194 ~~l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                        +++ -.+++.  +.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        55 --~~~-~~~ll~~~~vD~V~i~tp~~~-H~~~~~~al~~GkhVl~   95 (334)
T 3ohs_X           55 --YGS-YEELAKDPNVEVAYVGTQHPQ-HKAAVMLCLAAGKAVLC   95 (334)
T ss_dssp             --ESS-HHHHHHCTTCCEEEECCCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             --cCC-HHHHhcCCCCCEEEECCCcHH-HHHHHHHHHhcCCEEEE
Confidence              111 133443  5888888875543 34445556677777764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=92.88  E-value=0.58  Score=39.38  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=26.4

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r   43 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFR-VVVHYR   43 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            456788888 569999999999999974 777663

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=92.87  E-value=0.17  Score=42.63  Aligned_cols=88  Identities=11%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+|||+|.+|..+++.+... |+.-+.++|.|.-..    ++.       ++                .+.|..  
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~----g~~-------i~----------------gv~V~~--  129 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV----GRP-------VR----------------GGVIEH--  129 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT----TCE-------ET----------------TEEEEE--
T ss_pred             CCCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHH----hhh-------hc----------------CCeeec--
Confidence            345799999999999999964322 555667888654211    110       00                123322  


Q ss_pred             cCCCcchhhhcC-CCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVH-GFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~-~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                        .++ -.++++ +.|+|+.|+.+... ..+.+.|.+.|+..|
T Consensus       130 --~~d-l~ell~~~ID~ViIA~Ps~~~-~ei~~~l~~aGi~~I  168 (211)
T 2dt5_A          130 --VDL-LPQRVPGRIEIALLTVPREAA-QKAADLLVAAGIKGI  168 (211)
T ss_dssp             --GGG-HHHHSTTTCCEEEECSCHHHH-HHHHHHHHHHTCCEE
T ss_pred             --HHh-HHHHHHcCCCEEEEeCCchhH-HHHHHHHHHcCCCEE
Confidence              111 234443 58999999876644 478888889888754

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.86  E-value=0.12  Score=45.72  Aligned_cols=36  Identities=17%  Similarity=0.073  Sum_probs=31.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|.. +..+|..
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~d~~  174 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGMK-VLAYDIL  174 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            56778999999999999999999999974 7777754

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=92.85  E-value=0.14  Score=45.83  Aligned_cols=43  Identities=19%  Similarity=0.089  Sum_probs=34.8

Q ss_pred             cccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         107 NWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       107 l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      -|....  .+..++|+|||+|.+|..+|+.|...|+. +..+|...
T Consensus       129 ~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~  173 (324)
T 3hg7_A          129 LWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMK-VLGVSRSG  173 (324)
T ss_dssp             CCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCCE-EEEEcCCh
Confidence            454322  56788999999999999999999999984 77778654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.84  E-value=0.12  Score=46.21  Aligned_cols=35  Identities=11%  Similarity=-0.085  Sum_probs=30.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +...|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGID-CDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            346799999999999999999999985 88998764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.83  E-value=0.94  Score=38.96  Aligned_cols=91  Identities=11%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCccc-ccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVT-KEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve-~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      .++.++|+|.|+ ||+|.++|+.|+..|.. +.++|.+.-. ...+ ..        -...+.+.+.+.+.....  ++.
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~--~~~   92 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLDGVKL-PM--------STPDDLAETVRQVEALGR--RII   92 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCCS-CC--------CCHHHHHHHHHHHHHTTC--CEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccccccc-cc--------cCHHHHHHHHHHHHhcCC--ceE
Confidence            456788999995 69999999999999986 6666644211 0111 00        112345556666666543  566


Q ss_pred             EEecCCCcch--hh-------hcCCCcEEEEcCC
Q psy9587         191 SNETKVDEIS--EE-------FVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~--~~-------~l~~~DlVI~~~d  215 (236)
                      .+..++++..  ..       .+...|++|.+..
T Consensus        93 ~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A           93 ASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            6666666432  11       2347899987753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=92.82  E-value=0.21  Score=42.80  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=28.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   49 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRD   49 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            4667889998 56999999999999997 47777754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.82  E-value=0.096  Score=46.85  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|. ++..+|.+
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~  178 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRH  178 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4677899999999999999999999997 57888754

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=92.82  E-value=0.32  Score=45.25  Aligned_cols=37  Identities=19%  Similarity=0.110  Sum_probs=33.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|.|.||..+++.|...|..-+.+.|.+
T Consensus       209 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          209 KMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             CGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecC
Confidence            4677899999999999999999999999888888866

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=92.81  E-value=0.36  Score=41.36  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=28.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~   62 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADID   62 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4667889998 569999999999999984 7777743

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.81  E-value=0.12  Score=49.14  Aligned_cols=37  Identities=16%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|+|+|++|..+|+.|...|. ++.++|.+.
T Consensus       262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~  298 (488)
T 3ond_A          262 MIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDP  298 (488)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            3677899999999999999999999999 688888653

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=92.79  E-value=0.5  Score=41.87  Aligned_cols=32  Identities=6%  Similarity=0.055  Sum_probs=24.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHh-CCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~  148 (236)
                      .+|+|||+|.+|...++.|... ++.-+.++|.
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~   39 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASR   39 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            5789999999999999998875 3433445563

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=92.78  E-value=0.51  Score=41.99  Aligned_cols=35  Identities=6%  Similarity=0.176  Sum_probs=24.6

Q ss_pred             hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         201 EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .+++.++|+|+.|+.+....... ..+.+.|+++|+
T Consensus        74 ~~l~~~vDvV~~aTp~~~h~~~a-~~~l~aGk~Vi~  108 (334)
T 2czc_A           74 NDLLEKVDIIVDATPGGIGAKNK-PLYEKAGVKAIF  108 (334)
T ss_dssp             HHHHTTCSEEEECCSTTHHHHHH-HHHHHHTCEEEE
T ss_pred             HHhccCCCEEEECCCccccHHHH-HHHHHcCCceEe
Confidence            44557899999999876544443 366677888763

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=92.77  E-value=0.091  Score=45.91  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ..|+|||+|.+|+.+|..|++.|. +++|+|....
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            358999999999999999999998 4999997654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=92.76  E-value=0.13  Score=45.45  Aligned_cols=37  Identities=19%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|.. +..+|...
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  175 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGMN-ILLYDPYP  175 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCCE-EEEECCCC
Confidence            56778999999999999999999999974 77877643

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=92.75  E-value=0.35  Score=42.31  Aligned_cols=34  Identities=3%  Similarity=-0.053  Sum_probs=24.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D  149 (236)
                      ..+|+|||+|.+|..+++.|... ++.-..++|.+
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~   43 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRN   43 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            35789999999999999999874 33322366644

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=92.74  E-value=0.13  Score=45.91  Aligned_cols=37  Identities=16%  Similarity=-0.015  Sum_probs=31.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|...
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  179 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFR  179 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            56778999999999999999999999974 77777543

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=92.74  E-value=0.66  Score=37.99  Aligned_cols=76  Identities=16%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|+|.| .|++|.++++.|+..|...+.+.+.+.                    .+.+.+++.+....+  ++..+..+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~--------------------~~~~~~~~~~~~~~~--~~~~~~~D   59 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSA--------------------KAAEEVSKQIEAYGG--QAITFGGD   59 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH--------------------HHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH--------------------HHHHHHHHHHHhcCC--cEEEEeCC
Confidence            4678888 579999999999999976333233211                    233444555555443  45555556


Q ss_pred             CCcch--hhh-------cCCCcEEEEcC
Q psy9587         196 VDEIS--EEF-------VHGFDVVIATS  214 (236)
Q Consensus       196 l~~~~--~~~-------l~~~DlVI~~~  214 (236)
                      +++..  ...       +...|+||.+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~g~id~li~~A   87 (244)
T 1edo_A           60 VSKEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             TTSHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55421  122       23678888775

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=92.73  E-value=0.12  Score=44.30  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            468999999999999999999997 588888653

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=92.70  E-value=0.27  Score=44.09  Aligned_cols=34  Identities=12%  Similarity=0.222  Sum_probs=24.6

Q ss_pred             hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         201 EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+.+.++|+||+|+......... ..+.+.|+++|
T Consensus        73 ~~~~~~vDvV~~atp~~~~~~~a-~~~l~aG~~VI  106 (337)
T 1cf2_P           73 DDMLDEADIVIDCTPEGIGAKNL-KMYKEKGIKAI  106 (337)
T ss_dssp             HHHHHTCSEEEECCSTTHHHHHH-HHHHHHTCCEE
T ss_pred             HHHhcCCCEEEECCCchhhHHHH-HHHHHcCCEEE
Confidence            34557899999999887666654 45566677776

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=92.69  E-value=0.67  Score=36.25  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=28.2

Q ss_pred             cceEEEEcC----ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPL----TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~----GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..+|+|||+    |..|..++++|...|.. +..+|+..
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~   50 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPKV   50 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCcc
Confidence            367899999    78999999999999985 66666654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=92.68  E-value=0.11  Score=45.46  Aligned_cols=34  Identities=18%  Similarity=0.112  Sum_probs=30.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ..|+|||+|.+|+.+|..|++.|.. ++|+|.+..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~-V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCCC
Confidence            4689999999999999999999975 999997654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=92.67  E-value=0.13  Score=45.82  Aligned_cols=37  Identities=16%  Similarity=0.013  Sum_probs=31.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+...+|+|||+|.+|..+|+.|...|. ++..+|.+.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~  183 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR  183 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCc
Confidence            4677899999999999999999999997 478887543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.66  E-value=0.09  Score=47.25  Aligned_cols=34  Identities=9%  Similarity=-0.122  Sum_probs=29.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  228 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG  228 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcC
Confidence            3468999999999999999999999767877774

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=92.65  E-value=0.12  Score=46.03  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=34.3

Q ss_pred             cccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         107 NWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       107 l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .|....  .+..++|+|||+|.+|..+|+.|...|+. +..+|.+.
T Consensus       128 ~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~~  172 (315)
T 3pp8_A          128 LWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRSR  172 (315)
T ss_dssp             CCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESSC
T ss_pred             ccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCc
Confidence            464332  56778999999999999999999999985 77777543

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=92.63  E-value=0.61  Score=44.05  Aligned_cols=90  Identities=10%  Similarity=-0.005  Sum_probs=54.3

Q ss_pred             ccceEEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|.+||.||+|.. +|+.|...|.. ++..|....                  .+    ..+.|++.  .+++.  .
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~-V~~sD~~~~------------------~~----~~~~L~~~--gi~~~--~   70 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHT-VTGSDANIY------------------PP----MSTQLEQA--GVTIE--E   70 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCC------------------TT----HHHHHHHT--TCEEE--E
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCE-EEEECCCCC------------------cH----HHHHHHHC--CCEEE--C
Confidence            5578999999999986 79999999986 777774321                  00    23445554  34443  2


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.   ....+..++|+||.+..-....-.+ +.+++.|+|++
T Consensus        71 G~---~~~~~~~~~d~vV~Spgi~~~~p~l-~~a~~~gi~v~  108 (524)
T 3hn7_A           71 GY---LIAHLQPAPDLVVVGNAMKRGMDVI-EYMLDTGLRYT  108 (524)
T ss_dssp             SC---CGGGGCSCCSEEEECTTCCTTSHHH-HHHHHHTCCEE
T ss_pred             CC---CHHHcCCCCCEEEECCCcCCCCHHH-HHHHHCCCcEE
Confidence            21   1123446799999875322211222 45677888875

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=92.62  E-value=0.36  Score=40.64  Aligned_cols=31  Identities=13%  Similarity=0.074  Sum_probs=25.1

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEE
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCL  145 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~L  145 (236)
                      +.++|+|.|+ ||+|.++++.|+..|...+.+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~   56 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVH   56 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            4567888984 699999999999999874343

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=92.62  E-value=0.98  Score=39.39  Aligned_cols=109  Identities=12%  Similarity=0.015  Sum_probs=63.4

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+|+|+ |..|..++++|...|..-+..+|+..-..+ .           .|.+-...+.+.+.+-.+++-+...+
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~-~-----------~G~~vy~sl~el~~~~~~D~viI~tP   73 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-H-----------LGLPVFNTVREAVAATGATASVIYVP   73 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE-E-----------TTEEEESSHHHHHHHHCCCEEEECCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccce-e-----------CCeeccCCHHHHhhcCCCCEEEEecC
Confidence            3468999998 999999999999999874556666422111 1           11111111223333335565555544


Q ss_pred             cCCCcch-hhh-cCCCcEEEEcCC--CHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEIS-EEF-VHGFDVVIATSC--NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~-~~~-l~~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I  235 (236)
                      ....... .+. -.+..++|..+.  +.+....+.+.|++.++.++
T Consensus        74 ~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li  119 (288)
T 2nu8_A           74 APFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  119 (288)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            4432222 222 245676555443  45666789999999988765

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=92.61  E-value=0.4  Score=40.51  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=51.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~  191 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.-...+.   ...+-..|+..+. ++.+.+.+.+....+.+-+
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYR-VVATSRSIKPSADP---DIHTVAGDISKPETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCCCCSST---TEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcccC---ceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            4557889998 569999999999999985 77777664333333   2233346776654 4555566666655666666


Q ss_pred             Eec
Q psy9587         192 NET  194 (236)
Q Consensus       192 ~~~  194 (236)
                      +..
T Consensus       102 ~nA  104 (260)
T 3un1_A          102 NNA  104 (260)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            654

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=92.61  E-value=0.11  Score=47.18  Aligned_cols=38  Identities=13%  Similarity=0.089  Sum_probs=32.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|+.++..+|...
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~  198 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQA  198 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSC
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            56788999999999999999999999986688888543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=92.60  E-value=0.14  Score=45.37  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=31.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4677899999999999999999999997 47777754

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.58  E-value=0.56  Score=39.49  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=28.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~   40 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDIL   40 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4557889999 569999999999999974 7776643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.58  E-value=0.3  Score=43.43  Aligned_cols=34  Identities=15%  Similarity=0.063  Sum_probs=29.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  224 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI  224 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3468999999999999999999999988888774

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.57  E-value=0.1  Score=46.50  Aligned_cols=35  Identities=20%  Similarity=-0.036  Sum_probs=29.2

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++..+|+|||+|.+|+.++..|...|+ +++++|.+
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~   48 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRS   48 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECC
Confidence            345679999999999999999999997 47777754

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=92.57  E-value=0.076  Score=46.86  Aligned_cols=92  Identities=7%  Similarity=-0.115  Sum_probs=51.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      .+|+|||+|++|...+..| ..|+.-+.++|.+.-                   .+++.+++...+....++  .+    
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~-------------------~~~~~~~~~~~~~~~~~~--~~----   56 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPE-------------------EDLSKLEKAISEMNIKPK--KY----   56 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTT-------------------CCCHHHHHHHHTTTCCCE--EC----
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCch-------------------hhHHHHHHHHHHcCCCCc--cc----
Confidence            4789999999999888877 445554556664321                   012233444444332111  11    


Q ss_pred             Ccchhhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         197 DEISEEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       197 ~~~~~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++ -.+++  .+.|+|+.|+.+ .....+...|.+.|+++++
T Consensus        57 ~~-~~~ll~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~   96 (337)
T 3ip3_A           57 NN-WWEMLEKEKPDILVINTVF-SLNGKILLEALERKIHAFV   96 (337)
T ss_dssp             SS-HHHHHHHHCCSEEEECSSH-HHHHHHHHHHHHTTCEEEE
T ss_pred             CC-HHHHhcCCCCCEEEEeCCc-chHHHHHHHHHHCCCcEEE
Confidence            11 12333  357888888754 3445566667777887763

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=92.55  E-value=0.38  Score=42.37  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|+|.|+ ||+|.++++.|+..|.. +.+.+.+..      .         ....+.+.+++.+.....  ++..+.
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~------~---------r~~~~~~~l~~~~~~~~~--~~~~~~   65 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIV------G---------RNASNVEAIAGFARDNDV--DLRTLE   65 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTT------T---------TTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCccc------c---------cCHHHHHHHHHHHHhcCC--cEEEEE
Confidence            3467888884 79999999999999986 444443321      1         122355666666666544  455666


Q ss_pred             cCCCcch--hhh-------cCCCcEEEEcCC
Q psy9587         194 TKVDEIS--EEF-------VHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~--~~~-------l~~~DlVI~~~d  215 (236)
                      .++++..  .+.       +...|++|.+..
T Consensus        66 ~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6665422  222       347899998764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=92.53  E-value=0.12  Score=51.25  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|.|||+|..|+-+|..++.+|+. ++|+|.+.
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~-V~l~D~~~  349 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDP  349 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSH
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCCCc-hhcccchH
Confidence            467899999999999999999999987 78888543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=92.52  E-value=0.21  Score=44.14  Aligned_cols=89  Identities=10%  Similarity=-0.138  Sum_probs=50.9

Q ss_pred             cceEEEEcCC-hhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         116 IYVYSTGPLT-RVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       116 ~~~VlIVG~G-gvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      ..+|+||||| .+|...+..|...  ++.-+.++|.+.                    .|++.++++.    +..+  .+
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~--------------------~~~~~~a~~~----~~~~--~~   71 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTR--------------------SHAEEFAKMV----GNPA--VF   71 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSH--------------------HHHHHHHHHH----SSCE--EE
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCH--------------------HHHHHHHHHh----CCCc--cc
Confidence            3579999999 7999999999876  333334555321                    2344444332    1111  11


Q ss_pred             ecCCCcchhhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         193 ETKVDEISEEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       193 ~~~l~~~~~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                          ++ -.+++  .+.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        72 ----~~-~~~ll~~~~vD~V~i~tp~~~-H~~~~~~al~aGkhVl~  111 (340)
T 1zh8_A           72 ----DS-YEELLESGLVDAVDLTLPVEL-NLPFIEKALRKGVHVIC  111 (340)
T ss_dssp             ----SC-HHHHHHSSCCSEEEECCCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             ----CC-HHHHhcCCCCCEEEEeCCchH-HHHHHHHHHHCCCcEEE
Confidence                11 12333  35888888885533 34445566777877763

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.51  E-value=0.59  Score=38.81  Aligned_cols=32  Identities=22%  Similarity=0.130  Sum_probs=26.0

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.+++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~   35 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNY   35 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence            456788888 569999999999999975 66655

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.51  E-value=0.34  Score=45.43  Aligned_cols=88  Identities=14%  Similarity=0.043  Sum_probs=54.2

Q ss_pred             ccceEEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|.|||.|++|-. +|+.|...|.. ++..|...       .                ...+.|++.  .+++.  .
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~-V~~~D~~~-------~----------------~~~~~l~~~--gi~~~--~   72 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQ-ISGSDLAP-------N----------------SVTQHLTAL--GAQIY--F   72 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCE-EEEECSSC-------C----------------HHHHHHHHT--TCEEE--S
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCe-EEEEECCC-------C----------------HHHHHHHHC--CCEEE--C
Confidence            3468999999999985 89999999986 77777321       0                123345554  34432  2


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +    ...+.+.++|+||.+..-+...-. -..+++.|+|++
T Consensus        73 g----~~~~~~~~~d~vV~Spgi~~~~p~-~~~a~~~gi~v~  109 (494)
T 4hv4_A           73 H----HRPENVLDASVVVVSTAISADNPE-IVAAREARIPVI  109 (494)
T ss_dssp             S----CCGGGGTTCSEEEECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             C----CCHHHcCCCCEEEECCCCCCCCHH-HHHHHHCCCCEE
Confidence            2    233456789999987532211112 234677888875

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=92.51  E-value=0.6  Score=41.64  Aligned_cols=33  Identities=15%  Similarity=-0.027  Sum_probs=22.9

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~  148 (236)
                      ..+|+|||+|.+|.. .+..|... |+.-..++|.
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~   41 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASR   41 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcC
Confidence            357899999999986 67777654 4443345553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.50  E-value=0.13  Score=45.09  Aligned_cols=33  Identities=12%  Similarity=0.026  Sum_probs=28.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|. ++..+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~  198 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDI  198 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            45689999999999999999999999 6777663

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.50  E-value=0.13  Score=45.22  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      ..|+|||+|.+|+.+|..|++.|.. ++|+|...+-
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            4689999999999999999999985 9999987543

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=92.49  E-value=0.36  Score=43.07  Aligned_cols=90  Identities=9%  Similarity=0.083  Sum_probs=52.8

Q ss_pred             ccceEEEEcCChhHH-HHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGA-EIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGs-evak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+|||+|.+|. ..+..|...|+.-+.++|.+.                    .|++.++++    ++.+.+  + 
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~--------------------~~a~~~a~~----~~~~~~--~-   77 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDD--------------------ALAAEFSAV----YADARR--I-   77 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCH--------------------HHHHHHHHH----SSSCCE--E-
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCH--------------------HHHHHHHHH----cCCCcc--c-
Confidence            346899999999885 467777777776566666332                    233333332    222211  1 


Q ss_pred             cCCCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         194 TKVDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       194 ~~l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                         ++ -.++++  +.|+|+.|+.+. ....+...|.+.|+++++
T Consensus        78 ---~~-~~~ll~~~~vD~V~I~tp~~-~H~~~~~~al~aGkhVl~  117 (361)
T 3u3x_A           78 ---AT-AEEILEDENIGLIVSAAVSS-ERAELAIRAMQHGKDVLV  117 (361)
T ss_dssp             ---SC-HHHHHTCTTCCEEEECCCHH-HHHHHHHHHHHTTCEEEE
T ss_pred             ---CC-HHHHhcCCCCCEEEEeCChH-HHHHHHHHHHHCCCeEEE
Confidence               11 134443  488988887654 445555667778888764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.44  E-value=0.12  Score=44.34  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            47899999999999999999997 588888654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=92.44  E-value=0.13  Score=46.10  Aligned_cols=34  Identities=21%  Similarity=0.124  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|..+|..|++.|+.+++|+|...
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            5689999999999999999999997699998653

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=92.43  E-value=0.14  Score=45.78  Aligned_cols=37  Identities=16%  Similarity=-0.032  Sum_probs=32.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|.. +..+|...
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  178 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYP  178 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            57788999999999999999999999975 77888654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.43  E-value=0.12  Score=44.51  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|..|..+|..|++.|. +++|+|.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~   36 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGH-EVLVAEAA   36 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            468999999999999999999998 48999976

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=92.43  E-value=0.61  Score=39.88  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         3 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (330)
T 2c20_A            3 SILICGGAGYIGSHAVKKLVDEGL-SVVVVDN   33 (330)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            588898 58999999999999995 5777664

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=92.39  E-value=0.43  Score=42.45  Aligned_cols=86  Identities=14%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         116 IYVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       116 ~~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ..+|+|||+|.+|.. .+..|... |+.-+.++|.+.                    .|       +.+..+.+++  + 
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~--------------------~~-------~~~~~~~~~~--~-   54 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT--------------------EE-------VKRDFPDAEV--V-   54 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH--------------------HH-------HHHHCTTSEE--E-
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH--------------------HH-------HHhhCCCCce--E-
Confidence            357899999999986 67777654 443334555332                    01       2223333332  1 


Q ss_pred             cCCCcchhhhcC--CCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         194 TKVDEISEEFVH--GFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       194 ~~l~~~~~~~l~--~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ..    -.+++.  +.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        55 ~~----~~~ll~~~~vD~V~i~tp~~~-H~~~~~~al~aGkhVl~   94 (358)
T 3gdo_A           55 HE----LEEITNDPAIELVIVTTPSGL-HYEHTMACIQAGKHVVM   94 (358)
T ss_dssp             SS----THHHHTCTTCCEEEECSCTTT-HHHHHHHHHHTTCEEEE
T ss_pred             CC----HHHHhcCCCCCEEEEcCCcHH-HHHHHHHHHHcCCeEEE
Confidence            11    123443  6788888876533 23444556677777764

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.37  E-value=0.76  Score=38.41  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=25.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   34 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGFD-IAVADL   34 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            5678888 569999999999999975 667663

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.37  E-value=0.12  Score=46.01  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+...+|+|||+|.+|..+|+.|...|.. +.++|.+
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~  187 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQ-RFLYTGR  187 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCC-EEEEESS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            46778999999999999999999999984 8888854

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.36  E-value=0.37  Score=42.30  Aligned_cols=34  Identities=9%  Similarity=-0.133  Sum_probs=28.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~  204 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL  204 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3468999999999999998888887777888774

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.36  E-value=0.85  Score=38.83  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=27.1

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r   55 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYH   55 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence            4557788998 569999999999999975 777663

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.35  E-value=0.14  Score=44.47  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|..+|..|++.|..+++|+|.+.
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            5689999999999999999999975799999774

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.33  E-value=0.14  Score=44.46  Aligned_cols=30  Identities=13%  Similarity=0.197  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|||+|.+|+.++..|+..|. .++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            58899999999999999999996 6888886

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=92.33  E-value=0.15  Score=45.56  Aligned_cols=37  Identities=19%  Similarity=-0.002  Sum_probs=32.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|...
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  179 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVFE  179 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            46788999999999999999999999975 77778643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=92.32  E-value=0.14  Score=45.22  Aligned_cols=33  Identities=24%  Similarity=0.055  Sum_probs=28.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..++|.|||+|..|+.+|.+|+ +|. .++++|.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~   43 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVS   43 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSC
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECC
Confidence            4578999999999999999999 998 58898865

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=92.31  E-value=0.32  Score=45.20  Aligned_cols=37  Identities=27%  Similarity=0.120  Sum_probs=32.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D  149 (236)
                      .++.++|.|.|.|.+|..+++.|.. .|..-+.+.|.+
T Consensus       206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~  243 (415)
T 2tmg_A          206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR  243 (415)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            4677899999999999999999999 999988888843

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.29  E-value=0.61  Score=40.26  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=27.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r   58 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGR   58 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3557788888 569999999999999975 777663

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.28  E-value=0.66  Score=39.37  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.+.|
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~   59 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGAK-VAVNY   59 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            46678899995 69999999999999986 55544

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=92.27  E-value=0.21  Score=45.03  Aligned_cols=87  Identities=9%  Similarity=-0.021  Sum_probs=49.5

Q ss_pred             ceEEEEcCC-hhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLT-RVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~G-gvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|||+| .+|...+..|... ++.-+.++|.+                    ..|++.++++.     .+.  .+ .
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~--------------------~~~~~~~a~~~-----g~~--~~-~   54 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPN--------------------EDVRERFGKEY-----GIP--VF-A   54 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSC--------------------HHHHHHHHHHH-----TCC--EE-S
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCC--------------------HHHHHHHHHHc-----CCC--eE-C
Confidence            578999999 8898899998875 33334455532                    12344444332     222  11 1


Q ss_pred             CCCcchhhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEISEEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .    -.+++  .+.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        55 ~----~~ell~~~~vD~V~i~tp~~~-H~~~~~~al~aGk~Vl~   93 (387)
T 3moi_A           55 T----LAEMMQHVQMDAVYIASPHQF-HCEHVVQASEQGLHIIV   93 (387)
T ss_dssp             S----HHHHHHHSCCSEEEECSCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             C----HHHHHcCCCCCEEEEcCCcHH-HHHHHHHHHHCCCceee
Confidence            1    12333  35788888876533 23444566677777653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.26  E-value=0.14  Score=41.64  Aligned_cols=31  Identities=10%  Similarity=0.028  Sum_probs=26.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|+| +|.+|+.+++.|+..|. +++++|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578999 99999999999999996 58887743

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.26  E-value=0.14  Score=45.80  Aligned_cols=33  Identities=21%  Similarity=-0.012  Sum_probs=29.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|.|||+|..|+-+|..++.+|.. ++|+|.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECC
Confidence            35799999999999999999999987 8898865

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.23  E-value=0.29  Score=41.35  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=27.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   38 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGR   38 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            3456788888 579999999999999974 777663

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.23  E-value=0.32  Score=40.22  Aligned_cols=34  Identities=18%  Similarity=0.116  Sum_probs=27.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r   37 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTAT   37 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            3557889998 569999999999999975 666663

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=92.23  E-value=0.15  Score=45.22  Aligned_cols=34  Identities=21%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      .-|+|||+|.+|..+|..|++.|.. ++|+|....
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~-V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHR-VLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCC
Confidence            4689999999999999999999985 899997654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.23  E-value=0.14  Score=44.89  Aligned_cols=31  Identities=13%  Similarity=-0.125  Sum_probs=26.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|+|+|++|+.++..|+ .|. .+++++.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECC
Confidence            36899999999999999999 874 57777743

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.21  E-value=0.13  Score=44.64  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            468999999999999999999997 588888654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.21  E-value=0.18  Score=47.40  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=30.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|.|||+|..|+.+|..|+.+|. .++++|.+.
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   87 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE   87 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence            44689999999999999999999998 588988653

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.20  E-value=0.62  Score=39.53  Aligned_cols=34  Identities=12%  Similarity=0.079  Sum_probs=27.5

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   38 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGR   38 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            3556788888 569999999999999975 777664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=92.19  E-value=0.63  Score=38.96  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   36 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGF   36 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeC
Confidence            456788888 569999999999999975 666653

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=92.17  E-value=0.11  Score=46.23  Aligned_cols=33  Identities=15%  Similarity=0.004  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            568999999999999999999999 599999875

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=92.14  E-value=0.65  Score=39.86  Aligned_cols=76  Identities=12%  Similarity=0.037  Sum_probs=54.8

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~  190 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.-  +.+ ... ++-..|+.... ++.+.+.+.+.+..+.+-
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~--~~~-~~~-~~~~~Dv~~~~~v~~~~~~~~~~~G~iDil   82 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQ-VLTTARARP--EGL-PEE-LFVEADLTTKEGCAIVAEATRQRLGGVDVI   82 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCE-EEEEESSCC--TTS-CTT-TEEECCTTSHHHHHHHHHHHHHHTSSCSEE
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCE-EEEEECCch--hCC-CcE-EEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            467889999995 49999999999999986 667776532  344 333 44567887654 666777777777767766


Q ss_pred             EEe
Q psy9587         191 SNE  193 (236)
Q Consensus       191 ~~~  193 (236)
                      +.+
T Consensus        83 Vnn   85 (261)
T 4h15_A           83 VHM   85 (261)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=92.14  E-value=0.14  Score=45.45  Aligned_cols=35  Identities=11%  Similarity=0.090  Sum_probs=30.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|||+|.+|..+|+.|...|. ++..+|.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4677899999999999999999998886 5888886

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.13  E-value=1.2  Score=39.38  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=55.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      .+|+|.| .|.+|..+++.|+..|. ++++++.+.       .           +.+    ++.+.. .+  .++....+
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------~-----------~~~----~~~l~~-~~--~v~~v~~D   59 (352)
T 1xgk_A            6 KTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSL-------K-----------GLI----AEELQA-IP--NVTLFQGP   59 (352)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCS-------C-----------SHH----HHHHHT-ST--TEEEEESC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC-------C-----------hhh----HHHHhh-cC--CcEEEECC
Confidence            5689999 58999999999999885 466655321       0           001    122222 12  34555666


Q ss_pred             -CCcch--hhhcCCCcEEEEcCCC------HHHHHHHHHHHHHcC-C-cEE
Q psy9587         196 -VDEIS--EEFVHGFDVVIATSCN------PNQLIKIDDFCRSKS-K-ISL  235 (236)
Q Consensus       196 -l~~~~--~~~l~~~DlVI~~~d~------~~~r~~In~~c~~~~-i-p~I  235 (236)
                       +++..  .+.++++|+||.+...      ... ..+.+.|++.+ + .+|
T Consensus        60 ~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~-~~l~~aa~~~g~v~~~V  109 (352)
T 1xgk_A           60 LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIG-KDLADAAKRAGTIQHYI  109 (352)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHH-HHHHHHHHHHSCCSEEE
T ss_pred             ccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHH-HHHHHHHHHcCCccEEE
Confidence             65432  4567889999866532      233 56677777777 5 444

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=92.13  E-value=0.88  Score=40.50  Aligned_cols=23  Identities=22%  Similarity=0.037  Sum_probs=20.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS  138 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~  138 (236)
                      ..+|.|+|||.+|+.+++.|...
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~   28 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSF   28 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH
T ss_pred             EEeEEEEecCHHHHHHHHHHHhC
Confidence            35789999999999999999875

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=92.11  E-value=0.35  Score=44.30  Aligned_cols=79  Identities=10%  Similarity=0.052  Sum_probs=54.0

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCC-ce---EEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCc-e
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGV-KS---VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNV-E  188 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GV-g~---I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v-~  188 (236)
                      ..+|.|+| +|.||..++-.|+..|+ ++   |.|+|-|.                +....|++..+-.|.... |.. .
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~----------------~~~~~~~~G~amDL~h~~~p~~~~   95 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS----------------ERSFQALEGVAMELEDSLYPLLRE   95 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC----------------GGGHHHHHHHHHHHHTTTCTTEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCc----------------cchhhhhHHHHHhHHhhhhhhcCC
Confidence            35799999 79999999999999887 44   77766332                122345677777787765 442 2


Q ss_pred             EEEEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         189 VTSNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       189 I~~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      +...     ....+-++++|+||.+..
T Consensus        96 v~i~-----~~~y~~~~daDvVVitag  117 (375)
T 7mdh_A           96 VSIG-----IDPYEVFEDVDWALLIGA  117 (375)
T ss_dssp             EEEE-----SCHHHHTTTCSEEEECCC
T ss_pred             cEEe-----cCCHHHhCCCCEEEEcCC
Confidence            2222     124566899999998865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.09  E-value=0.13  Score=45.37  Aligned_cols=33  Identities=12%  Similarity=0.002  Sum_probs=28.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|..+++.+...|. ++..+|.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~  196 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI  196 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            34689999999999999999999998 6777663

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=92.09  E-value=0.22  Score=44.10  Aligned_cols=33  Identities=12%  Similarity=-0.048  Sum_probs=23.6

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~D  149 (236)
                      .+|+|||+|.+|.. .+..|... |+.-..++|.+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~   42 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSD   42 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            57899999999986 77777655 44433455643

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=92.09  E-value=0.18  Score=44.55  Aligned_cols=36  Identities=14%  Similarity=0.064  Sum_probs=31.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~dr~  156 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQ-VRGFSRT  156 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            46778999999999999999999999974 7777754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.09  E-value=0.16  Score=43.64  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            68999999999999999999997 588888653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.07  E-value=0.14  Score=45.17  Aligned_cols=33  Identities=12%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D  149 (236)
                      -+|.|||+|.+|+.++..|+..|+   ..++++|.+
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            468999999999999999999995   678888865

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=92.07  E-value=0.46  Score=40.37  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=50.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~  191 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-....+......+-..|+.... ++.+.+.+.+....+.+-+
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            35578889985 69999999999999985 777776533222220112233345776543 4555666666666666666


Q ss_pred             EecC
Q psy9587         192 NETK  195 (236)
Q Consensus       192 ~~~~  195 (236)
                      +...
T Consensus        93 nnAg   96 (266)
T 3p19_A           93 NNAG   96 (266)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            5443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=92.06  E-value=0.13  Score=46.13  Aligned_cols=37  Identities=11%  Similarity=0.080  Sum_probs=31.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|.. +.++|.+.
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~dr~~  197 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSRSK  197 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEECSSC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            46778899999999999999999999974 77887543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=92.06  E-value=0.86  Score=39.83  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=26.1

Q ss_pred             cceEEEEcCChhHH-HHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGA-EIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGs-evak~La~~GVg~I~LvD~D  149 (236)
                      ..+|+|||+|.+|. ..+..|...|+.-+.++|.+
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~   38 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESD   38 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCC
Confidence            35789999999986 57788876777656787854

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.03  E-value=0.18  Score=46.27  Aligned_cols=38  Identities=11%  Similarity=-0.127  Sum_probs=33.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      .+...+|+|+|+|.+|..+++.+...|. +++++|...-
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~  218 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPE  218 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGG
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            4566899999999999999999999998 5999997643

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=92.02  E-value=0.19  Score=44.55  Aligned_cols=31  Identities=3%  Similarity=0.065  Sum_probs=23.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHH--hCCceEEEee
Q psy9587         117 YVYSTGPLTRVGAEIAKNIIL--SGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~--~GVg~I~LvD  147 (236)
                      .+|+|||+|.+|..+++.|..  .|+.-..++|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d   37 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG   37 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEEC
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEe
Confidence            578999999999999999976  2343334455

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.00  E-value=0.16  Score=44.67  Aligned_cols=32  Identities=16%  Similarity=0.051  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|.|||+|..|+.++..|+.+|. .++++|.+
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGE-EVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            578999999999999999999996 58888754

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=92.00  E-value=0.52  Score=39.41  Aligned_cols=78  Identities=10%  Similarity=-0.011  Sum_probs=46.6

Q ss_pred             cccceEEEEcCC---hhHHHHHHHHHHhCCceEEEeeCCcccc---------cCCCCCccccCCCcCCChH-HHHHHHHH
Q psy9587         114 YKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLDSGVVTK---------EDVNTAQFLAPHEDIGKNR-AKSSEARA  180 (236)
Q Consensus       114 lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD~D~Ve~---------sNL~~rq~l~~~~dIGk~K-aea~~~~L  180 (236)
                      ++.++|+|.|++   |+|.++++.|+..|.. +.++|.+.-..         ... +.+..+-..|+.... ++.+.+.+
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            466789999975   9999999999999986 55655433211         001 112233344555443 44555555


Q ss_pred             HhhCCCceEEEEe
Q psy9587         181 QNLNPNVEVTSNE  193 (236)
Q Consensus       181 ~~inp~v~I~~~~  193 (236)
                      .+....+.+-++.
T Consensus        96 ~~~~g~id~li~n  108 (267)
T 3gdg_A           96 VADFGQIDAFIAN  108 (267)
T ss_dssp             HHHTSCCSEEEEC
T ss_pred             HHHcCCCCEEEEC
Confidence            5555555555544

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=91.99  E-value=0.17  Score=44.99  Aligned_cols=35  Identities=23%  Similarity=0.052  Sum_probs=30.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~  150 (236)
                      .++|+|||.|.-|..+|..|.+.|-+ +|+|||...
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            46899999999999999999999875 799998654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=91.99  E-value=0.78  Score=38.37  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=28.1

Q ss_pred             cccceEEEEcCC---hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|++   |+|.++++.|+..|.. +.++|.+
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~   42 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAG   42 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCc
Confidence            456789999964   3999999999999986 6666643

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=91.97  E-value=0.33  Score=43.16  Aligned_cols=34  Identities=12%  Similarity=0.022  Sum_probs=25.5

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~D  149 (236)
                      ..+|+|||||.+|.. .+..|... |+.-..++|.+
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~   40 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERS   40 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSS
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCC
Confidence            467899999999996 77777765 55545577765

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=91.97  E-value=0.15  Score=45.98  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=31.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~-V~~~d~~  200 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPY  200 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTT
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEECCC
Confidence            46778999999999999999999999984 7777754

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=91.96  E-value=0.56  Score=39.18  Aligned_cols=79  Identities=20%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCC---CCccccCCCcCCChH-HHHHHHHHHhhCCCce
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVN---TAQFLAPHEDIGKNR-AKSSEARAQNLNPNVE  188 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~---~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~  188 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-....+.   ..+..+-..|+.... ++.+.+.+.+....+.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   83 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVH   83 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            45678899995 69999999999999986 777775543222220   122233345665543 4555555555555555


Q ss_pred             EEEEe
Q psy9587         189 VTSNE  193 (236)
Q Consensus       189 I~~~~  193 (236)
                      +-++.
T Consensus        84 ~lv~n   88 (257)
T 3tpc_A           84 GLVNC   88 (257)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            55554

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=91.96  E-value=0.68  Score=43.67  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=53.8

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|.| .|+||.++++.|+..|..++.+++...-..                 ++.+.+.+.|...  ..++..+..
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~-----------------~~~~~l~~~l~~~--g~~v~~~~~  319 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEA-----------------PGAAELAEELRGH--GCEVVHAAC  319 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGS-----------------TTHHHHHHHHHTT--TCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCccc-----------------HHHHHHHHHHHhc--CCEEEEEEe
Confidence            46788888 789999999999999998898877432111                 1233445555553  356777777


Q ss_pred             CCCcch--hhhcC--CCcEEEEcCC
Q psy9587         195 KVDEIS--EEFVH--GFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~--~~~l~--~~DlVI~~~d  215 (236)
                      ++.+..  ..++.  ..|+||.+..
T Consensus       320 Dvtd~~~v~~~~~~~~ld~VVh~AG  344 (511)
T 2z5l_A          320 DVAERDALAALVTAYPPNAVFHTAG  344 (511)
T ss_dssp             CSSCHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCCCHHHHHHHHhcCCCcEEEECCc
Confidence            766532  33443  4888888753

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=91.92  E-value=0.46  Score=40.25  Aligned_cols=31  Identities=13%  Similarity=0.008  Sum_probs=25.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHh--CCceEEEeeC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILS--GVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~--GVg~I~LvD~  148 (236)
                      .+|+|.|+ |.+|+++++.|+..  |. +++++|.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r   36 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE-NVIASDI   36 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG-GEEEEES
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC-EEEEEcC
Confidence            46889996 89999999999998  54 5777664

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=91.92  E-value=0.5  Score=41.19  Aligned_cols=31  Identities=6%  Similarity=-0.009  Sum_probs=22.4

Q ss_pred             ceEEEEcCChhHH-HHHHHHHHh-CCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGA-EIAKNIILS-GVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGs-evak~La~~-GVg~I~LvD~  148 (236)
                      .+|+|||+|.+|. ..++.|... |+. ++++|.
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~-l~v~d~   35 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIE-LVLCTR   35 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEE-EEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCce-EEEEeC
Confidence            3689999999998 488988764 333 335554

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=91.90  E-value=0.17  Score=44.23  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=29.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            34578999999999999999999997 588888654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=91.89  E-value=0.35  Score=43.16  Aligned_cols=31  Identities=16%  Similarity=-0.030  Sum_probs=25.8

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEE
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCL  145 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~L  145 (236)
                      ...+|+|+|+ |++|..++..+...|...|.+
T Consensus       164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~  195 (371)
T 3gqv_A          164 KPVYVLVYGGSTATATVTMQMLRLSGYIPIAT  195 (371)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            4568999999 899999999999999964444

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=91.88  E-value=0.35  Score=40.80  Aligned_cols=34  Identities=21%  Similarity=0.148  Sum_probs=27.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r   66 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGAD-VAIWYN   66 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557888998 569999999999999975 777664

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=91.87  E-value=0.16  Score=45.69  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=31.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|. ..|. ++..+|.+.
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~  197 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAP  197 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCC
Confidence            567789999999999999999999 8887 578888643

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=91.82  E-value=0.19  Score=47.05  Aligned_cols=35  Identities=14%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHH---hCCceEEEeeCCcc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL---SGVKSVCLLDSGVV  151 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~---~GVg~I~LvD~D~V  151 (236)
                      ...|+|||+|..|+.+|..|++   .|+ +++|+|.+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            3579999999999999999999   898 5999997653

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=91.80  E-value=0.19  Score=45.53  Aligned_cols=36  Identities=14%  Similarity=0.007  Sum_probs=31.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|.. +..+|..
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~  192 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMN-VLVWGRE  192 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSH
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCE-EEEECCC
Confidence            46778999999999999999999999974 7777765

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=91.76  E-value=0.75  Score=38.83  Aligned_cols=75  Identities=17%  Similarity=0.065  Sum_probs=47.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~  191 (236)
                      ++.++|+|.| .||+|.++++.|+..|.. +.++|.+.-...++     .+-..|+.... ++.+.+.+.+....+.+-+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~-----~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv   79 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFVDEGSK-VIDLSIHDPGEAKY-----DHIECDVTNPDQVKASIDHIFKEYGSISVLV   79 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSCCCSCSS-----EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEecCcccCCce-----EEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4557788998 569999999999999984 77777653221111     23345776643 4445555555555566555


Q ss_pred             Eec
Q psy9587         192 NET  194 (236)
Q Consensus       192 ~~~  194 (236)
                      +..
T Consensus        80 ~~A   82 (264)
T 2dtx_A           80 NNA   82 (264)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=91.76  E-value=0.29  Score=43.03  Aligned_cols=34  Identities=12%  Similarity=-0.022  Sum_probs=28.4

Q ss_pred             ceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|+|||+| .+|...+..|...|+.-+.++|.+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~   38 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDIND   38 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCH
Confidence            578999995 5999999999999887777888663

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=91.74  E-value=0.062  Score=47.50  Aligned_cols=90  Identities=8%  Similarity=-0.021  Sum_probs=51.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhC-Cc------eE-EEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSG-VK------SV-CLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN  186 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~G-Vg------~I-~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~  186 (236)
                      +..+|+|||||.+|..-+..+.... +.      +| .+.|.                    ...+++.++++.    +.
T Consensus         5 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~--------------------~~~~a~~~a~~~----g~   60 (390)
T 4h3v_A            5 TNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGR--------------------DAEAVRAAAGKL----GW   60 (390)
T ss_dssp             CEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECS--------------------SHHHHHHHHHHH----TC
T ss_pred             CcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcC--------------------CHHHHHHHHHHc----CC
Confidence            4578999999999998888876542 11      12 23332                    223444444433    22


Q ss_pred             ceEEEEecCCCcchhhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         187 VEVTSNETKVDEISEEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       187 v~I~~~~~~l~~~~~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++  +    ++ -.+++  .+.|+|+.|+.+.. ...+...|.+.|+++++
T Consensus        61 ~~~--~----~d-~~~ll~~~~iDaV~I~tP~~~-H~~~~~~al~aGkhVl~  104 (390)
T 4h3v_A           61 STT--E----TD-WRTLLERDDVQLVDVCTPGDS-HAEIAIAALEAGKHVLC  104 (390)
T ss_dssp             SEE--E----SC-HHHHTTCTTCSEEEECSCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             Ccc--c----CC-HHHHhcCCCCCEEEEeCChHH-HHHHHHHHHHcCCCcee
Confidence            111  1    11 12344  35899998886533 34555567788888764

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=91.74  E-value=0.85  Score=39.20  Aligned_cols=30  Identities=13%  Similarity=-0.043  Sum_probs=24.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+|+|.| +|.||+.+++.|+..|.. ++.++
T Consensus        10 ~~vlVTGatGfIG~~l~~~Ll~~G~~-V~~~~   40 (338)
T 2rh8_A           10 KTACVVGGTGFVASLLVKLLLQKGYA-VNTTV   40 (338)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence            5789999 789999999999999975 44433

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=91.72  E-value=0.32  Score=42.19  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=29.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++.++|+|.|+ ||||.++++.|+..|. ++.++|.+.
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~   75 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSP   75 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            45678899985 6999999999999998 578887653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=91.68  E-value=0.17  Score=45.69  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=31.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|...
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~  206 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGLA-IHYHNRTR  206 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTCE-EEEECSSC
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCCE-EEEECCCC
Confidence            56778999999999999999999999984 77778654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.67  E-value=0.54  Score=39.86  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=46.2

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCccccc----CCCCCccccCCCcCCChH-HHHHHHHHHhhCCCc
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKE----DVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNV  187 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~s----NL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v  187 (236)
                      ++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-...    .+ +....+-..|+.... ++.+.+.+.+....+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGAAASV-GRGAVHHVVDLTNEVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSCHHHHHHHH-CTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            45678899995 69999999999999985 778876532211    11 122223334555432 344444444444445


Q ss_pred             eEEEEe
Q psy9587         188 EVTSNE  193 (236)
Q Consensus       188 ~I~~~~  193 (236)
                      .+-++.
T Consensus        87 d~lv~n   92 (271)
T 3tzq_B           87 DIVDNN   92 (271)
T ss_dssp             CEEEEC
T ss_pred             CEEEEC
Confidence            554443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.66  E-value=0.66  Score=38.15  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=27.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r   38 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            4557789998 569999999999999975 777664

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=91.65  E-value=0.22  Score=42.12  Aligned_cols=30  Identities=17%  Similarity=0.046  Sum_probs=24.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|.|+ |.+|+.+++.|. .|. +++.+|.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~-~V~~~~r~   32 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVG-NLIALDVH   32 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTS-EEEEECTT
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCC-eEEEeccc
Confidence            4788996 899999999999 774 57776643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=91.65  E-value=0.2  Score=41.91  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|..+|..|++.|. +++|+|...
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            468999999999999999999997 699999653

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=91.64  E-value=0.31  Score=41.41  Aligned_cols=36  Identities=17%  Similarity=0.051  Sum_probs=29.3

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~   60 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTR   60 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45678899999 469999999999999975 7777654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=91.64  E-value=0.17  Score=45.10  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=30.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3579999999999999999999998 589998653

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.64  E-value=0.12  Score=45.64  Aligned_cols=33  Identities=15%  Similarity=-0.077  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC------ceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV------KSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV------g~I~LvD~D  149 (236)
                      .+|+|||+|.+|+.++..|+..|.      .+++++|.+
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~   47 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFE   47 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcC
Confidence            368999999999999999999993      468888854

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.62  E-value=0.18  Score=46.20  Aligned_cols=36  Identities=11%  Similarity=-0.146  Sum_probs=32.0

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +...+|+|+|+|.+|..+++.+..+|. +++++|...
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            456899999999999999999999998 699999654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.62  E-value=0.19  Score=43.12  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=28.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+ |.+|+.+++.|+..|. +++++|.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            36899999 9999999999999996 68888854

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.62  E-value=0.061  Score=47.43  Aligned_cols=33  Identities=9%  Similarity=0.026  Sum_probs=27.7

Q ss_pred             ccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+| ++|..++..+...|. ++..+|.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~  177 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTR  177 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeC
Confidence            45689999998 899999999999999 5777663

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=91.60  E-value=0.46  Score=41.88  Aligned_cols=35  Identities=9%  Similarity=-0.042  Sum_probs=26.8

Q ss_pred             ccceEEEEcCChhHH-HHHHHHHHh-CCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGA-EIAKNIILS-GVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGs-evak~La~~-GVg~I~LvD~D  149 (236)
                      +..+|+|||+|.+|. ..+..|... |+.-+.++|.+
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~   60 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH   60 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSS
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            446899999999998 688888875 55555666755

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=91.54  E-value=0.44  Score=40.07  Aligned_cols=35  Identities=9%  Similarity=0.017  Sum_probs=28.5

Q ss_pred             cccceEEEEcC---ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL---TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~---GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++|+|.|+   ||+|.++++.|+..|.. +.++|.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~   44 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   44 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCc
Confidence            34578899997   69999999999999975 7777644

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=91.54  E-value=0.2  Score=45.97  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|.
T Consensus       116 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~-V~~~d~  150 (381)
T 3oet_A          116 SLRDRTIGIVGVGNVGSRLQTRLEALGIR-TLLCDP  150 (381)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTCE-EEEECH
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEECC
Confidence            46778999999999999999999999985 777775

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=91.51  E-value=0.93  Score=38.17  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=46.6

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .++|+|.| .||+|.++++.|+..|.. +.+.+.          |.         ..+.+.+.+.+.+..+  ++..+..
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~----------~~---------~~~~~~~~~~~~~~~~--~~~~~~~   83 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYA----------AN---------REAADAVVAAITESGG--EAVAIPG   83 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES----------SC---------HHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC----------CC---------hhHHHHHHHHHHhcCC--cEEEEEc
Confidence            35788888 569999999999999987 444321          11         1234445555555433  5555555


Q ss_pred             CCCcch--h-------hhcCCCcEEEEcC
Q psy9587         195 KVDEIS--E-------EFVHGFDVVIATS  214 (236)
Q Consensus       195 ~l~~~~--~-------~~l~~~DlVI~~~  214 (236)
                      ++.+..  .       +.+...|+||.+.
T Consensus        84 Dl~~~~~v~~~~~~~~~~~g~id~li~nA  112 (272)
T 4e3z_A           84 DVGNAADIAAMFSAVDRQFGRLDGLVNNA  112 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            655421  1       1234678888764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=91.48  E-value=0.94  Score=38.46  Aligned_cols=33  Identities=24%  Similarity=0.060  Sum_probs=26.3

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ++.++|+|.| .|++|.++++.|+..|.. +.+++
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~   75 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVSH-VICIS   75 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEc
Confidence            3556788998 569999999999999864 55555

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.48  E-value=0.21  Score=47.03  Aligned_cols=35  Identities=14%  Similarity=-0.052  Sum_probs=30.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHH---hCCceEEEeeCCcc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL---SGVKSVCLLDSGVV  151 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~---~GVg~I~LvD~D~V  151 (236)
                      ...|+|||+|..|..+|..|++   .|+ +++|+|.+.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            4579999999999999999999   887 6999997654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=91.47  E-value=0.21  Score=44.50  Aligned_cols=34  Identities=15%  Similarity=-0.022  Sum_probs=29.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVD-VDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            35799999999999999999999984 88998654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=91.46  E-value=0.65  Score=39.23  Aligned_cols=34  Identities=21%  Similarity=0.073  Sum_probs=27.2

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.+.|
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~   49 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNY   49 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            356678899995 59999999999999985 55544

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=91.42  E-value=1.4  Score=34.29  Aligned_cols=33  Identities=12%  Similarity=0.047  Sum_probs=26.9

Q ss_pred             cceEEEEcC----ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPL----TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~----GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..+|+|||+    |..|..++++|...|.. +.-+++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~-v~~Vnp~   58 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYD-VYPVNPK   58 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTT
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCE-EEEECCC
Confidence            467899999    68999999999999994 5555554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=91.39  E-value=0.54  Score=39.16  Aligned_cols=36  Identities=6%  Similarity=-0.045  Sum_probs=28.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCC--ceEEEeeCC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGV--KSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GV--g~I~LvD~D  149 (236)
                      ++.++|+|.| .|++|.++++.|+..|.  .++.++|.+
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            3556788888 57999999999999995  568887743

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=91.39  E-value=0.8  Score=38.84  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=49.3

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~  190 (236)
                      .++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-.....     ..-..|+.... ++.+.+.+.+....+.+-
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~-----~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~l   98 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGAR-VAVADRAVAGIAAD-----LHLPGDLREAAYADGLPGAVAAGLGRLDIV   98 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECSSCCTTSCCS-----EECCCCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHhh-----hccCcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            456678899995 69999999999999974 77877653322221     22245676543 445556666555556666


Q ss_pred             EEecC
Q psy9587         191 SNETK  195 (236)
Q Consensus       191 ~~~~~  195 (236)
                      ++...
T Consensus        99 vnnAg  103 (266)
T 3uxy_A           99 VNNAG  103 (266)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            65443

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=91.39  E-value=0.22  Score=44.48  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=26.2

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~D~  150 (236)
                      ..+|+|||+|.+|.. .+..|... |+.-+.++|.+.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   41 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDL   41 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            457999999999995 88988765 544445777654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.38  E-value=0.14  Score=43.92  Aligned_cols=36  Identities=22%  Similarity=0.112  Sum_probs=27.4

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~   66 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRR   66 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            45678899999 469999999999999985 7777754

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=91.38  E-value=0.21  Score=45.72  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+..++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus       113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~  148 (380)
T 2o4c_A          113 DLAERTYGVVGAGQVGGRLVEVLRGLGWK-VLVCDPP  148 (380)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTCE-EEEECHH
T ss_pred             ccCCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            46788999999999999999999999975 7777753

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=91.37  E-value=0.23  Score=45.17  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=31.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+|.||..+++.|...|.. +.+.|.+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~Gak-VvvsD~~  207 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTD  207 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            36788999999999999999999999985 5588865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	6e-26
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	2e-17
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	9e-04

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-26
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
            G EI KN++L G+ S  ++D   V+ ED     F      IGKNRA+++    Q LN +
Sbjct: 36  TGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGKNRAEAAMEFLQELNSD 94

Query: 187 VEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           V  +  E   + + +    F   F VV+AT    +  +++ D   +   
Sbjct: 95  VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQI 143

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 2e-17
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+ +     +  PN
Sbjct: 48  LGCELLKNLALSGFRQIHVIDMDTIDVSNLN-RQFLFRPKDIGRPKAEVAAEFLNDRVPN 106

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
             V  +  K+ + ++ F   F +++    +      I+    S   
Sbjct: 107 CNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLN 152

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 14/107 (13%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G   ++ +  +GV ++ LLD   V+  ++           +G+ + +S+      +NP+
Sbjct: 41  LGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTL-HSDATVGQPKVESARDALTRINPH 99

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI 233
           + +T     +D+     +     ++    +   +    +     +K+
Sbjct: 100 IAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKV 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	99.97
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.34
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.9
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.77
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.73
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.59
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.58
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.54
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.54
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.44
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.35
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.32
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.25
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.24
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.19
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.18
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.18
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.17
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.15
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.11
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.1
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.04
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.03
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.99
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.98
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.96
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.96
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.9
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.9
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.9
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.82
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.77
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.73
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.71
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.69
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.62
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.6
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.56
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.5
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.47
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.46
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.46
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.45
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.44
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.42
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.38
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.35
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.32
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.3
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.28
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.24
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.17
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.09
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.06
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.05
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.04
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.93
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.89
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.86
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.81
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.77
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.77
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.77
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.76
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.76
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.71
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.7
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.67
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.65
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.63
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.62
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.61
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.6
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.59
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.59
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.59
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.56
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.52
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.51
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.51
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.5
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.49
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.45
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.42
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.41
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	95.37
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.35
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.34
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.3
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.24
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.23
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.22
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.2
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.19
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.18
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.18
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.11
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.07
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.05
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.05
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.02
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.01
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.99
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.96
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.92
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.89
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.88
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.87
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.81
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.8
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.8
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.73
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.72
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.72
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.71
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.61
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.58
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.57
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.57
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.54
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.54
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.53
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.52
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	94.49
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.46
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.45
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.45
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.43
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	94.34
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.28
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.26
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.22
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.19
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.16
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.15
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.15
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.06
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.05
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.99
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.99
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.98
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.98
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.98
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.97
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.96
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.92
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.85
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.79
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.77
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.6
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.58
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.57
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.48
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.44
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.42
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	93.41
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.39
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.33
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.33
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.27
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.24
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.22
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.18
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.08
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	93.07
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.07
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	93.04
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.03
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.01
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.0
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.99
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.94
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	92.9
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	92.87
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.81
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.77
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	92.75
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.74
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.48
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.45
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.4
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.28
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.26
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.19
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.1
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.09
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.09
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.09
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.02
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.01
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	91.91
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.9
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.83
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.74
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.68
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	91.67
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.63
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.58
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.54
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.51
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.48
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.35
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.3
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	91.3
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.29
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.26
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.25
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.2
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.06
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	91.04
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.02
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.93
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	90.91
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	90.89
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.86
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.83
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.81
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.77
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.71
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.67
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.64
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	90.64
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.48
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.38
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.37
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.36
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.35
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	90.31
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.28
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.19
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.18
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.16
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.13
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.95
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.93
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.91
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.86
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	89.83
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	89.75
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.62
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.61
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.61
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.31
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.3
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.3
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	89.27
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.77
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.76
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.52
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	88.43
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.32
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.31
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.14
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	88.12
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.0
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.92
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.8
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	87.78
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.68
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	87.39
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.3
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.28
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.13
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	86.94
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	86.88
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	86.8
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	86.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.67
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.47
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.47
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	86.44
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.33
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.29
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.22
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	86.18
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	86.18
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.12
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	86.03
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	86.03
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.97
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	85.79
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	85.71
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.47
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.16
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	85.14
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.03
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	84.87
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	84.26
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.74
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.53
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.5
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.43
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.15
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	82.95
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	82.87
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	82.74
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.32
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	82.3
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	81.46
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	81.18
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	80.99
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	80.54
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.3

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-34  Score=250.21  Aligned_cols=138  Identities=15%  Similarity=0.188  Sum_probs=128.7

Q ss_pred             cccchhhhhccc--Ccc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587          98 TVTLTTLHTNWA--GSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA  173 (236)
Q Consensus        98 ~~rydrq~~l~g--~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka  173 (236)
                      ..||+||+.+|+  .++  +++.++|+|+||||+||++|++|+++|||+|+|+|+|.|+++|| +||++|+.+|||++|+
T Consensus         8 ~~ry~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL-~RQ~l~~~~diG~~K~   86 (247)
T d1jw9b_           8 MLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL-QRQTLHSDATVGQPKV   86 (247)
T ss_dssp             HHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGG-GTCTTCCGGGTTSBHH
T ss_pred             HHHhhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhh-hhhccccHhhcCchHH
Confidence            468999999975  333  57889999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      ++++++|+++||+++|+.+...+...+ ..++..+|+||+|+|+...+.+++++|+++++|+|+
T Consensus        87 ~~a~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~  150 (247)
T d1jw9b_          87 ESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVS  150 (247)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhccccccccccceeeeccchhhhhhhHHHHHHHhCCCccc
Confidence            999999999999999999999887655 667889999999999999999999999999999984

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=259.41  Aligned_cols=137  Identities=25%  Similarity=0.325  Sum_probs=128.2

Q ss_pred             ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587          99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS  176 (236)
Q Consensus        99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~  176 (236)
                      .|||||+++||.++  +++.++|+|||+||+|||+||||+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||+++
T Consensus         6 ~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL-~rqf~~~~~diGk~ka~~~   84 (529)
T d1yova1           6 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDA-GNNFFLQRSSIGKNRAEAA   84 (529)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHH-HHCTTCCGGGTTSBHHHHH
T ss_pred             hhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhc-CchhcCChhhCCCHHHHHH
Confidence            58999999999988  56779999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHhhCCCceEEEEecCCCc---chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         177 EARAQNLNPNVEVTSNETKVDE---ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       177 ~~~L~~inp~v~I~~~~~~l~~---~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      +++|+++||+|+++.+...+.+   .+.+++++||+||+|.++...+..|+++|++++||+|+
T Consensus        85 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~  147 (529)
T d1yova1          85 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLI  147 (529)
T ss_dssp             HHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHhCCCCcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999988776543   34678999999999999999999999999999999984

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=236.08  Aligned_cols=122  Identities=19%  Similarity=0.263  Sum_probs=115.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+|+.+|||++||++++++|+++||+++|+.+.
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL-~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGG-GTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhh-cccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            5678999999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH------------HcCCcEEC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCR------------SKSKISLF  236 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~------------~~~ip~I~  236 (236)
                      ..+.+.+.+++++||+||+|.|+..+|.++|++|.            +.++|+|+
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~  168 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLID  168 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEE
T ss_pred             ccccchHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence            99988778899999999999999999999999997            45778873

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.34  E-value=2.9e-06  Score=62.92  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +++.++|+|||.|.+|..-++.|..+|.. +++++++.-++                      ....+    ..-.++..
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~~~----------------------~~~~~----~~~~i~~~   61 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFIPQ----------------------FTVWA----NEGMLTLV   61 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCCHH----------------------HHHHH----TTTSCEEE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCChH----------------------HHHHH----hcCCceee
Confidence            56788999999999999999999999985 88887543211                      11111    11234444


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      ...+.+   +.+.++++|+.|+++......+.+.|+++++|+
T Consensus        62 ~~~~~~---~dl~~~~lv~~at~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          62 EGPFDE---TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             ESSCCG---GGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             ccCCCH---HHhCCCcEEeecCCCHHHHHHHHHHHHHcCCEE
Confidence            544433   457899999999999999999999999999997

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=2.3e-05  Score=60.47  Aligned_cols=118  Identities=9%  Similarity=0.066  Sum_probs=67.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc-cCCCCCccccCCCcCCChHHHHHHHHHHhh---CCCce
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK-EDVNTAQFLAPHEDIGKNRAKSSEARAQNL---NPNVE  188 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~-sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i---np~v~  188 (236)
                      +++.++|+|||.|.+|.+-++.|..+|. ++++++++.-++ ..+ ...+....  ......+.....+.+.   .-.-.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   85 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPK-FGKFIQNK--DQPDYREDAKRFINPNWDPTKNEI   85 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHH-HCGGGC-------------CEEECTTCCTTSCCC
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHH-HHhccchh--hhhhhhhhhhhhcchhhhhccccc
Confidence            5678999999999999999999999997 699997664321 111 00000000  0000000000000000   00012


Q ss_pred             EEEEecCCCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHH---cCCcE
Q psy9587         189 VTSNETKVDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRS---KSKIS  234 (236)
Q Consensus       189 I~~~~~~l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~---~~ip~  234 (236)
                      ++.....+....   ...+.++++||.|+++.+....|.+.|+.   .+||+
T Consensus        86 ~~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~~~~~i~V  137 (150)
T d1kyqa1          86 YEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV  137 (150)
T ss_dssp             SEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred             eEEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHhccCCCEE
Confidence            333333333322   12346789999999999999999999987   47876

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6.9e-05  Score=59.56  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=33.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|+|+||.|..++..|...|+.+|+|++.+
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~   51 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR   51 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence            3577899999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.73  E-value=6.5e-05  Score=57.59  Aligned_cols=34  Identities=12%  Similarity=-0.107  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++|+|+|+|.+|..+|++|+..|. +++++|.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh
Confidence            3679999999999999999999998 599998543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.62  E-value=7.4e-05  Score=58.68  Aligned_cols=93  Identities=19%  Similarity=0.227  Sum_probs=62.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .++.++|+|||+|.+|..++++|...|+++++++.           |.         ..|++.+++.+   +  .++.  
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n-----------Rt---------~~ka~~l~~~~---~--~~~~--   73 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN-----------RT---------YERAVELARDL---G--GEAV--   73 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC-----------SS---------HHHHHHHHHHH---T--CEEC--
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc-----------Cc---------HHHHHHHHHhh---h--cccc--
Confidence            35778999999999999999999999999999954           43         23666666544   1  2221  


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCH---HHHHHHHHHHHHc--CCcEE
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNP---NQLIKIDDFCRSK--SKISL  235 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~---~~r~~In~~c~~~--~ip~I  235 (236)
                        .+.+ -.+.+.++|+||.|+...   -....+.......  +.|++
T Consensus        74 --~~~~-~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          74 --RFDE-LVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             --CGGG-HHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             --cchh-HHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeE
Confidence              2222 245678999999998643   2344555554443  45543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=5.4e-05  Score=53.93  Aligned_cols=90  Identities=13%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+|+|+|..|-.+|+.|...|.. ++++|...-.+ ..   .                     .+...+.+  +.
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~~~-~~---~---------------------~~~~~~~~--~~   54 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMTPP-GL---D---------------------KLPEAVER--HT   54 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSSCT-TG---G---------------------GSCTTSCE--EE
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcCch-hH---H---------------------HHhhccce--ee
Confidence            5678899999999999999999999976 77777532111 11   0                     00112222  11


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..   .....+.++|+||.+..-+.. ..+-+.++++|+|+|
T Consensus        55 ~~---~~~~~~~~~d~vi~SPGi~~~-~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          55 GS---LNDEWLMAADLIVASPGIALA-HPSLSAAADAGIEIV   92 (93)
T ss_dssp             SB---CCHHHHHHCSEEEECTTSCTT-SHHHHHHHHTTCEEE
T ss_pred             cc---cchhhhccCCEEEECCCCCCC-CHHHHHHHHcCCCeE
Confidence            11   233456789999988753322 345566889999987

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.58  E-value=0.00026  Score=55.17  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVT  190 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~  190 (236)
                      |..+|.|||+|.+|+.+|..|+..|+.++.|+|-+.                    .|++..+..|....+    ...+.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~--------------------~~~~g~a~Dl~~~~~~~~~~~~~~   65 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK--------------------GMPEGKALDLSHVTSVVDTNVSVR   65 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS--------------------SHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc--------------------ccchhHHHHHhhhccccCCeeEEe
Confidence            457889999999999999999999999999998211                    245555555554322    21222


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      . ...    ..+-++++|+||.+..
T Consensus        66 ~-~~~----~~~~~~~adiVvitag   85 (154)
T d1pzga1          66 A-EYS----YEAALTGADCVIVTAG   85 (154)
T ss_dssp             E-ECS----HHHHHTTCSEEEECCS
T ss_pred             c-cCc----hhhhhcCCCeEEEecc
Confidence            1 111    1345689999998763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.54  E-value=3.2e-05  Score=60.22  Aligned_cols=92  Identities=16%  Similarity=0.124  Sum_probs=56.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHH--HHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEAR--AQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~--L~~inp~v~I~~~~~  194 (236)
                      ++|+|||+|.+|+.+|..|++.|. .++++|.+.-....+                    .+.  .....+..+......
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~   60 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEI--------------------QDRGAIIAEGPGLAGTAHPD   60 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH--------------------HHHTSEEEESSSCCEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH--------------------HHcCCCchhhhhhhhhhhhh
Confidence            578999999999999999999997 588888643211111                    110  001112222222222


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      ..+....+.++++|+||.|+.....+..+.++...
T Consensus        61 ~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~   95 (184)
T d1bg6a2          61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASY   95 (184)
T ss_dssp             EEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGG
T ss_pred             hhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhc
Confidence            22222356678899999888777777666666543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.54  E-value=0.0002  Score=53.67  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=62.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+|.+|..+++.|...|.. ++++|.|.-                    +++    ++.+.. .  +..+.++..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d~~--------------------~~~----~~~~~~-~--~~vi~Gd~~   53 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDKD--------------------ICK----KASAEI-D--ALVINGDCT   53 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH--------------------HHH----HHHHHC-S--SEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC-cceecCChh--------------------hhh----hhhhhh-h--hhhccCccc
Confidence            589999999999999999999965 888886531                    122    222222 2  234444444


Q ss_pred             cch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy9587         198 EIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       198 ~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip  233 (236)
                      +..   ...++++|.++.++++.+....+...++..+.+
T Consensus        54 ~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~   92 (132)
T d1lssa_          54 KIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGIN   92 (132)
T ss_dssp             SHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCC
T ss_pred             chhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCc
Confidence            322   334688999999999998888888888888775

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=6.9e-05  Score=57.32  Aligned_cols=85  Identities=8%  Similarity=-0.035  Sum_probs=55.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|+|+|.+|+.++..|+.+|. .++++|.+.-....+ ..   ...                    ......  ..+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~-~~---~~~--------------------~~~~~~--~~~~   54 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSV-NL---VET--------------------DGSIFN--ESLT   54 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEE-EE---ECT--------------------TSCEEE--EEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhh-cc---ccC--------------------Cccccc--cccc
Confidence            58999999999999999999998 488988765433333 11   000                    001000  0111


Q ss_pred             cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      ....+.+..+|+||.|+-.......+..+...
T Consensus        55 ~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~   86 (167)
T d1ks9a2          55 ANDPDFLATSDLLLVTLKAWQVSDAVKSLAST   86 (167)
T ss_dssp             ESCHHHHHTCSEEEECSCGGGHHHHHHHHHTT
T ss_pred             cchhhhhcccceEEEeecccchHHHHHhhccc
Confidence            12334567899999999888777777776553

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.35  E-value=0.00059  Score=52.72  Aligned_cols=74  Identities=22%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC--CceEEEEe
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP--NVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp--~v~I~~~~  193 (236)
                      ++|.|||+|.+|+.+|..|+..|. .+|.|+|-+                    +.|++..+..|....+  ........
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~--------------------~~~~~g~~~Dl~~a~~~~~~~~~~~~   61 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN--------------------EAKVKADQIDFQDAMANLEAHGNIVI   61 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS--------------------HHHHHHHHHHHHHHGGGSSSCCEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc--------------------cchhhhHHHhhhccccccCCccceec
Confidence            468899999999999999999995 678888832                    2234444445554322  22223333


Q ss_pred             cCCCcchhhhcCCCcEEEEcCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..     .+-++++|+||.+..
T Consensus        62 ~d-----~~~l~~adiVVitaG   78 (146)
T d1hyha1          62 ND-----WAALADADVVISTLG   78 (146)
T ss_dssp             SC-----GGGGTTCSEEEECCS
T ss_pred             cC-----HHHhccccEEEEecc
Confidence            22     245789999998865

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=0.00018  Score=55.75  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=53.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEEE
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVTS  191 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~~  191 (236)
                      +|.|||+ |.+|+.+|..|+..|+ ++|.|+|-+.    +              ..|++..+..|....+    .+++..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~----~--------------~~~~~g~a~Dl~~~~~~~~~~~~~~~   63 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH----S--------------INKLEGLREDIYDALAGTRSDANIYV   63 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG----G--------------HHHHHHHHHHHHHHHTTSCCCCEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh----h--------------hHhhhcccccchhcccccccCCcccc
Confidence            5889996 9999999999999996 7999999431    1              2466767777775432    344444


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ....    +.+-++++|+||.+..
T Consensus        64 ~~~~----d~~~l~~aDvVVitAG   83 (145)
T d1hyea1          64 ESDE----NLRIIDESDVVIITSG   83 (145)
T ss_dssp             EETT----CGGGGTTCSEEEECCS
T ss_pred             CCcc----hHHHhccceEEEEecc
Confidence            3322    2345789999998864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.25  E-value=0.00018  Score=56.04  Aligned_cols=73  Identities=22%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC----CCceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN----PNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in----p~v~I~~~  192 (236)
                      .+|.|||+|.+|+.+|..|++.++.+|.|+|-+         .           .|++..+..|....    ..+++...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~---------~-----------~~~~g~a~Dl~~~~~~~~~~~~v~~~   63 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV---------K-----------NMPHGKALDTSHTNVMAYSNCKVSGS   63 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS---------S-----------SHHHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc---------C-----------CcceeeecchhhhccccCCCcEEEec
Confidence            578999999999999999999999999999821         1           23444555554432    22333332


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                       .     ..+-++++|+||.+..
T Consensus        64 -~-----~~~~~~~advvvitag   80 (150)
T d1t2da1          64 -N-----TYDDLAGADVVIVTAG   80 (150)
T ss_dssp             -C-----CGGGGTTCSEEEECCS
T ss_pred             -c-----cccccCCCcEEEEecc
Confidence             1     2345689999998875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.24  E-value=4.5e-05  Score=60.40  Aligned_cols=35  Identities=14%  Similarity=-0.068  Sum_probs=31.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +..+|+|+|+|++|...+..+...|..++..+|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            45689999999999999999999999999999854

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00048  Score=53.87  Aligned_cols=36  Identities=6%  Similarity=-0.118  Sum_probs=31.2

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ++.++|+|+|+||++..++..|...|+ +|+|+..+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchH
Confidence            466889999999999999999999998 499976543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.18  E-value=0.00064  Score=53.47  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=51.5

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc--eEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV--EVTS  191 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v--~I~~  191 (236)
                      +..+|.|||+|.+|+.+|..|+..|. .+|.|+|-+                    +.++++-+.-|.......  ....
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~--------------------~~~a~g~alDl~h~~~~~~~~~~~   78 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL--------------------EDKLKGEMMDLQHGSLFLQTPKIV   78 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC--------------------HHHHHHHHHHHHHTGGGCCCSEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec--------------------cchhHHHHHHHhccccccCCCeEE
Confidence            44689999999999999999999998 679998832                    234555565565422211  1222


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ...     +.+-++++|+||.+..
T Consensus        79 ~~~-----d~~~~~~adiVVitAg   97 (160)
T d1i0za1          79 ADK-----DYSVTANSKIVVVTAG   97 (160)
T ss_dssp             ECS-----SGGGGTTCSEEEECCS
T ss_pred             ecc-----chhhcccccEEEEecC
Confidence            222     2345789999998764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.18  E-value=0.00068  Score=52.28  Aligned_cols=76  Identities=13%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc--eEEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV--EVTS  191 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v--~I~~  191 (236)
                      ...+|.|||+|.+|+.+|..|+..|. .+|.|+|-+.                    .|++..+..|....+..  .+..
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~--------------------~~~~g~a~Dl~~~~~~~~~~~~~   64 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE--------------------SKAIGDAMDFNHGKVFAPKPVDI   64 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH--------------------HHHHHHHHHHHHHTTSSSSCCEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc--------------------ccccchhccHhhCccccCCCeEE
Confidence            34679999999999999999999997 4799988321                    23444455566543321  2222


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ...     +.+.++++|+||.+..
T Consensus        65 ~~~-----d~~~l~daDvvvitag   83 (148)
T d1ldna1          65 WHG-----DYDDCRDADLVVICAG   83 (148)
T ss_dssp             EEC-----CGGGTTTCSEEEECCS
T ss_pred             EEC-----CHHHhccceeEEEecc
Confidence            222     2355789999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.00093  Score=51.43  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ++|.|||+ |.+|+.+|..|+..|+ .+|.|+|-+                    +.|+++  ..+..............
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~--------------------~~~~~a--~Dl~~~~~~~~~~~~~~   58 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--------------------HTPGVA--ADLSHIETRATVKGYLG   58 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS--------------------SHHHHH--HHHTTSSSSCEEEEEES
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecc--------------------ccchhh--HHHhhhhhhcCCCeEEc
Confidence            46899996 9999999999999998 889999821                    113333  34444433333332222


Q ss_pred             CCCcchhhhcCCCcEEEEcCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d  215 (236)
                        .....+.++++|+||.+..
T Consensus        59 --~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1          59 --PEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             --GGGHHHHHTTCSEEEECCS
T ss_pred             --CCChHHHhCCCCEEEECCC
Confidence              1223566899999998754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.15  E-value=0.00068  Score=52.31  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=48.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh---hCCCceEEE
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN---LNPNVEVTS  191 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~---inp~v~I~~  191 (236)
                      ..+|.|||+|.+|+.+|..|+..|+ .+|.|+|-+.                    .|++..+..|..   .++...+  
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~--------------------~~~~g~a~Dl~~a~~~~~~~~~--   62 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK--------------------DRTKGDALDLEDAQAFTAPKKI--   62 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH--------------------HHHHHHHHHHHGGGGGSCCCEE--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc--------------------chhHHHHHHHhccccccCCceE--
Confidence            4578999999999999999999996 5899998432                    123333334443   3333222  


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ...+     .+-++++|+||.+..
T Consensus        63 ~~~d-----~~~~~~adivvitag   81 (146)
T d1ez4a1          63 YSGE-----YSDCKDADLVVITAG   81 (146)
T ss_dssp             EECC-----GGGGTTCSEEEECCC
T ss_pred             eecc-----HHHhccccEEEEecc
Confidence            2222     234689999999865

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00065  Score=53.37  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCce--EE
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVE--VT  190 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~--I~  190 (236)
                      .+..+|.|||+|.||+.+|..|+..|.. +|.|+|.+                    ..|+++.+.-|....+...  ..
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~--------------------~~~a~g~alDl~~~~~~~~~~~~   76 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD--------------------TDKLRGEALDLQHGSLFLSTPKI   76 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC--------------------HHHHHHHHHHHHHTTTTCSCCEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------chhhhccHHHHhCcchhcCCCeE
Confidence            4556799999999999999999999985 69998832                    2345556666665333222  11


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ....     +.+.++++|+||.+..
T Consensus        77 ~~~~-----d~~~~~~adivvitag   96 (159)
T d2ldxa1          77 VFGK-----DYNVSANSKLVIITAG   96 (159)
T ss_dssp             EEES-----SGGGGTTEEEEEECCS
T ss_pred             Eecc-----chhhhccccEEEEecc
Confidence            1122     2345688999988764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.11  E-value=0.001  Score=49.33  Aligned_cols=88  Identities=14%  Similarity=0.067  Sum_probs=53.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +++|+|+|.+|..+++.|...|.. ++++|.|.-....+                        ++..  ..  ++..+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~------------------------~~~~--~~--~~~gd~~   52 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAY------------------------ASYA--TH--AVIANAT   52 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHHT------------------------TTTC--SE--EEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHHHHH------------------------HHhC--Cc--ceeeecc
Confidence            578899999999999999999986 78888765332222                        1111  11  1222222


Q ss_pred             cc---hhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcE
Q psy9587         198 EI---SEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       198 ~~---~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~  234 (236)
                      ..   ...-+.++|.||.++.+ ......+...++.++.+-
T Consensus        53 ~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~   93 (134)
T d2hmva1          53 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPN   93 (134)
T ss_dssp             CTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSE
T ss_pred             cchhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCc
Confidence            21   12336778888777654 455555555556666543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0015  Score=50.53  Aligned_cols=94  Identities=14%  Similarity=0.023  Sum_probs=58.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe-c
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE-T  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~-~  194 (236)
                      ...|+|+|+|++|..++..+...|..++.++|.+.-                    |.+.    .+++-.. .+.... .
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~--------------------rl~~----a~~~Ga~-~~~~~~~~   81 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT--------------------RLSK----AKEIGAD-LVLQISKE   81 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--------------------HHHH----HHHTTCS-EEEECSSC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH--------------------HHHH----HHHhCCc-cccccccc
Confidence            467999999999999999999999999999884421                    1111    1222212 111111 1


Q ss_pred             CCCcch----hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         195 KVDEIS----EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       195 ~l~~~~----~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      ...+..    ...=.++|+||+|+.+.......-++++..|.-+
T Consensus        82 ~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv  125 (171)
T d1pl8a2          82 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLV  125 (171)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEE
T ss_pred             ccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEE
Confidence            111100    1122478999999999887777777776665433

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0023  Score=48.70  Aligned_cols=71  Identities=23%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh---hCCCceEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN---LNPNVEVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~---inp~v~I~~~~  193 (236)
                      +|.|||+|.+|+.++..|+..|. .+|.|+|-+                    +.|++..+..+..   ..+.+.+  ..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~--------------------~~~~~g~~~Dl~~~~~~~~~~~~--~~   59 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD--------------------KKRAEGDALDLIHGTPFTRRANI--YA   59 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS--------------------HHHHHHHHHHHHHHGGGSCCCEE--EE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc--------------------cccccchhccccccccccccccc--cC
Confidence            57899999999999999999998 478888822                    1234444444444   3333332  22


Q ss_pred             cCCCcchhhhcCCCcEEEEcCC
Q psy9587         194 TKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .     +.+-++++|+||.+..
T Consensus        60 ~-----~~~~~~~adivvitag   76 (140)
T d1a5za1          60 G-----DYADLKGSDVVIVAAG   76 (140)
T ss_dssp             C-----CGGGGTTCSEEEECCC
T ss_pred             C-----cHHHhcCCCEEEEecc
Confidence            2     2244789999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.03  E-value=0.00085  Score=51.70  Aligned_cols=94  Identities=17%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ..+|+|+|+|++|..++..+...|. ++..+|.+.-                    |.    +.++++.....+......
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~--------------------r~----~~a~~~ga~~~~~~~~~~   81 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPR--------------------RL----EVAKNCGADVTLVVDPAK   81 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHH--------------------HH----HHHHHTTCSEEEECCTTT
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc-cccccchHHH--------------------HH----HHHHHcCCcEEEeccccc
Confidence            4578999999999999999999997 6888874331                    11    112233322111111111


Q ss_pred             CCcch-hh-----hcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587         196 VDEIS-EE-----FVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS  234 (236)
Q Consensus       196 l~~~~-~~-----~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~  234 (236)
                      -.... .+     .-.++|+||+|+.+.......-++++..|.-+
T Consensus        82 ~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv  126 (170)
T d1e3ja2          82 EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLM  126 (170)
T ss_dssp             SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEE
T ss_pred             cccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceE
Confidence            11100 01     12468999999999887776667777666443

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.99  E-value=0.0032  Score=48.00  Aligned_cols=32  Identities=22%  Similarity=0.113  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|.|||+|.||+.+|..|+..|+..+.++|.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEee
Confidence            36889999999999999999999988988883

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00027  Score=55.57  Aligned_cols=35  Identities=9%  Similarity=-0.114  Sum_probs=31.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..++..+...|..++.++|.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            45789999999999999999999999999998853

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.96  E-value=0.0015  Score=49.65  Aligned_cols=72  Identities=18%  Similarity=0.072  Sum_probs=47.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH----HhhCCCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA----QNLNPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L----~~inp~v~I~~~  192 (236)
                      +|.|||+|.+|+.++..|+..|. .+|.|+|-+.                    .|++..+..+    .......++...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~--------------------~~~~~~~~d~~~~~~~~~~~~~i~~~   61 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE--------------------GIPQGKALDMYESGPVGLFDTKVTGS   61 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS--------------------SHHHHHHHHHHTTHHHHTCCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc--------------------ccchhhhhhhhcccchhcccceEEec
Confidence            57899999999999999999996 6899988332                    1222222222    223444555432


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                       .     +.+-++++|+||.+..
T Consensus        62 -~-----~~~~~~dadvvvitag   78 (142)
T d1guza1          62 -N-----DYADTANSDIVIITAG   78 (142)
T ss_dssp             -S-----CGGGGTTCSEEEECCS
T ss_pred             -C-----CHHHhcCCeEEEEEEe
Confidence             1     2245789999998864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0027  Score=52.60  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      ++|.++|+|.|++ |||.++|+.|++.|.. +.+.|.+                    ..|.+.+++++++.++..++..
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~-Vv~~~r~--------------------~~~l~~~~~~l~~~~~~~~~~~   65 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCART--------------------VGNIEELAAECKSAGYPGTLIP   65 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC--------------------HHHHHHHHHHHHHTTCSSEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC--------------------HHHHHHHHHHHHhcCCCceEEE
Confidence            4688999999955 9999999999999985 7777632                    2356778888888887778888


Q ss_pred             EecCCCcch---------hhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEIS---------EEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~---------~~~l~~~DlVI~~~d  215 (236)
                      +..++++..         .+.+...|++|.+..
T Consensus        66 ~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          66 YRCDLSNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            877776521         223467899887763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.0026  Score=48.72  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|+|||+|-+|+.+|+.|...|.. +|..+|.+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            589999999999999999999974 68888854

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.90  E-value=0.0024  Score=49.23  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|.+||+|-.|+.+|++|+..|. .+.++|.+.-..+++ .-.    .......    ..    +....+.+....-...
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~-~~~----~~~~~~~----~~----e~~~~~diii~~v~~~   68 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGL-VAA----GASAARS----AR----DAVQGADVVISMLPAS   68 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHH-HHT----TCEECSS----HH----HHHTSCSEEEECCSCH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhh-hhh----hccccch----hh----hhccccCeeeecccch
Confidence            58999999999999999999998 488888765443333 110    0001111    11    1222334333221111


Q ss_pred             c----------chhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         198 E----------ISEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       198 ~----------~~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .          .....+..=++||+++ .+++....+.+.+.++++.|+
T Consensus        69 ~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~  117 (162)
T d3cuma2          69 QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  117 (162)
T ss_dssp             HHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence            1          0122344457888775 568888999999999999876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.90  E-value=0.0012  Score=50.76  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh---CCCceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL---NPNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i---np~v~I~~~  192 (236)
                      .+|.|||+|.+|+.+|..|+..|+. +|.|+|-+                    ..|++.-+.-|+..   .+...+.. 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~--------------------~~~~~g~a~Dl~~a~~~~~~~~i~~-   60 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA--------------------KERVEAEVLDMQHGSSFYPTVSIDG-   60 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS--------------------HHHHHHHHHHHHHTGGGSTTCEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec--------------------cccchhHHHHHHhccccCCCceeec-
Confidence            4688999999999999999999984 68888822                    22444444445543   33333322 


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..     +.+-++++|+||.+..
T Consensus        61 ~~-----~~~~~~daDvVVitaG   78 (143)
T d1llda1          61 SD-----DPEICRDADMVVITAG   78 (143)
T ss_dssp             ES-----CGGGGTTCSEEEECCC
T ss_pred             CC-----CHHHhhCCcEEEEecc
Confidence            22     1234688999998875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.89  E-value=0.0042  Score=47.42  Aligned_cols=72  Identities=14%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh----CCCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL----NPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i----np~v~I~~~  192 (236)
                      +|.|||+|.+|+.+|..|+..|. .+|.|+|-+                    ..|++.-+..|+..    ....++...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~--------------------~~~~~g~alDl~~~~~~~~~~~~i~~~   61 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA--------------------EDLAVGEAMDLAHAAAGIDKYPKIVGG   61 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS--------------------HHHHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc--------------------cchhhHHHHHHhhhccccCCCCccccC
Confidence            57899999999999999998887 689998821                    22344444445432    222333321


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                       .     +.+-++++|+||.+..
T Consensus        62 -~-----d~~~~~~adiVvitag   78 (142)
T d1ojua1          62 -A-----DYSLLKGSEIIVVTAG   78 (142)
T ss_dssp             -S-----CGGGGTTCSEEEECCC
T ss_pred             -C-----CHHHhccccEEEEecc
Confidence             1     1245789999998865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.82  E-value=0.00021  Score=55.98  Aligned_cols=35  Identities=14%  Similarity=0.046  Sum_probs=30.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..++..+...|..++.+.|.+
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            44689999999999999999999999999998843

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.77  E-value=0.0013  Score=51.65  Aligned_cols=74  Identities=9%  Similarity=0.055  Sum_probs=49.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .++.++|+|+|+||.+-.++..|.. |..+|+|+.           |.         ..|++.+++.+....   ++...
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~n-----------R~---------~~~a~~l~~~~~~~~---~~~~~   70 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLAN-----------RT---------FSKTKELAERFQPYG---NIQAV   70 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEE-----------SS---------HHHHHHHHHHHGGGS---CEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeecc-----------ch---------HHHHHHHHHHHhhcc---ccchh
Confidence            3566789999999999999999986 668899864           44         246777777776554   23332


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ...     ...+..+|+||.|+.
T Consensus        71 ~~~-----~~~~~~~diiIN~tp   88 (171)
T d1p77a1          71 SMD-----SIPLQTYDLVINATS   88 (171)
T ss_dssp             EGG-----GCCCSCCSEEEECCC
T ss_pred             hhc-----cccccccceeeeccc
Confidence            221     112456777777753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.73  E-value=0.00078  Score=54.80  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .++.++|+|-|+|.+|..+|+.|...|. ++.+.|.|.-...+. ..   +....+...       .+  +.-.+.|-.-
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~-~~---~g~~~~~~~-------~~--~~~~~DI~iP   89 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHA-VA---LGHTAVALE-------DV--LSTPCDVFAP   89 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH-HH---TTCEECCGG-------GG--GGCCCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHH-Hh---hcccccCcc-------cc--ccccceeeec
Confidence            5788999999999999999999999995 577888765433322 10   000001000       01  1112233221


Q ss_pred             ---ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         193 ---ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ---~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                         ...+++.+.+.+ ++.+|+.+..++-+.....++++++||-++
T Consensus        90 cA~~~~I~~~~a~~i-~ak~i~e~AN~p~~~~~~~~~L~~rgI~~i  134 (201)
T d1c1da1          90 CAMGGVITTEVARTL-DCSVVAGAANNVIADEAASDILHARGILYA  134 (201)
T ss_dssp             CSCSCCBCHHHHHHC-CCSEECCSCTTCBCSHHHHHHHHHTTCEEC
T ss_pred             ccccccccHHHHhhh-hhheeeccCCCCcchhhHHHHhcccceEEE
Confidence               122333333334 478887777665554556778888888664

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.71  E-value=0.00087  Score=51.53  Aligned_cols=78  Identities=10%  Similarity=0.069  Sum_probs=49.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD  197 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~  197 (236)
                      +|+|||+|-+|+.+|+.|...|.. ++.+|.+.-                    +.    +++.+... +.  ...    
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~-V~~~d~~~~--------------------~~----~~a~~~~~-~~--~~~----   49 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY-LIGVSRQQS--------------------TC----EKAVERQL-VD--EAG----   49 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHH--------------------HH----HHHHHTTS-CS--EEE----
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE-EEEEECCch--------------------HH----HHHHHhhc-cc--eee----
Confidence            489999999999999999999974 777774421                    11    11122211 00  000    


Q ss_pred             cchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                       .+.+.++++|+||.|+........++++..
T Consensus        50 -~~~~~~~~~DiIilavp~~~~~~vl~~l~~   79 (165)
T d2f1ka2          50 -QDLSLLQTAKIIFLCTPIQLILPTLEKLIP   79 (165)
T ss_dssp             -SCGGGGTTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             -eecccccccccccccCcHhhhhhhhhhhhh
Confidence             123466888999888876666666666544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.69  E-value=0.00096  Score=51.84  Aligned_cols=36  Identities=14%  Similarity=0.048  Sum_probs=31.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|+|+|+||+|...+..+...|..++..+|.+.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            346899999999999999999999999999988544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.62  E-value=0.0038  Score=49.22  Aligned_cols=79  Identities=20%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++|+|.| .||+|.++++.|+..|. +++++|.+.                    .|.+.+++.+.+.. .+.+..
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~--------------------~~~~~~~~~~~~~~-~~~~~~   77 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL--------------------DKAQAAADSVNKRF-KVNVTA   77 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH--------------------HHHHHHHHHHHHHH-TCCCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch--------------------HHHHHHHHHHHhcc-chhhhh
Confidence            57889999999 68999999999999997 588877432                    24445566665543 223222


Q ss_pred             EecCCCc--chhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDE--ISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~--~~~~~l~~~DlVI~~~d  215 (236)
                        .++..  ...+.+.+.|+||.+..
T Consensus        78 --~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          78 --AETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             --EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             --hhcccHHHHHHHhcCcCeeeecCc
Confidence              22222  22566788999998864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.60  E-value=0.00044  Score=54.23  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=65.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +.|.|||+|..|+.+|++|+..|.. ++++|.+.=....+ ..+..-.....|-..    .+.+.+......+....-.-
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l-~~~~~~~~~~~~a~~----~~~~~~~~~~~~~ii~~~~~   76 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDF-LANEAKGTKVLGAHS----LEEMVSKLKKPRRIILLVKA   76 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHH-HHTTTTTSSCEECSS----HHHHHHHBCSSCEEEECSCT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHH-HHhccccccccchhh----hhhhhhhhcccceEEEecCc
Confidence            5789999999999999999999985 78888654322233 111111111112211    22333333333333322111


Q ss_pred             Ccc-------hhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEI-------SEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~-------~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+.       -...++.=++||+++ .++.....+.+.+.+.++.++
T Consensus        77 ~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l  123 (176)
T d2pgda2          77 GQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (176)
T ss_dssp             THHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee
Confidence            110       123345557888775 567777888888999988765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.56  E-value=0.0014  Score=51.69  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC--C--cccccCCCCCc-cccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS--G--VVTKEDVNTAQ-FLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~--D--~Ve~sNL~~rq-~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +|.|+|+|..|+.+|..|+..|. +++|+..  |  .++.-|- +|. ..+.. .+.                ...+   
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~-~~~~~~~~~-~~~----------------~~~i---   59 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISA-GREHPRLGV-KLN----------------GVEI---   59 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHT-TCCBTTTTB-CCC----------------SEEE---
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhh-hhhhhhhcc-hhc----------------cccc---
Confidence            47899999999999999999986 4777632  2  2222222 111 11110 000                0011   


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCR  228 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~  228 (236)
                        ..+....+.++++|+||.|+-+...+..+.++..
T Consensus        60 --~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~   93 (180)
T d1txga2          60 --FWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP   93 (180)
T ss_dssp             --ECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTT
T ss_pred             --cccccHHHHHhccchhhcccchhhhHHHHHhhcc
Confidence              1122235567889999999988777777666543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0096  Score=46.74  Aligned_cols=89  Identities=13%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .++|+|+| .|.+|+++++.|...|. ++++++.+.-.....            .              .+  .++....
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~------------~--------------~~--~~~~~~g   53 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSE------------G--------------PR--PAHVVVG   53 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSS------------S--------------CC--CSEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccc------------c--------------cc--ccccccc
Confidence            35789999 57899999999999996 578876543221111            0              01  2334555


Q ss_pred             CCCcch--hhhcCCCcEEEEcCCC----------HHHHHHHHHHHHHcCCc
Q psy9587         195 KVDEIS--EEFVHGFDVVIATSCN----------PNQLIKIDDFCRSKSKI  233 (236)
Q Consensus       195 ~l~~~~--~~~l~~~DlVI~~~d~----------~~~r~~In~~c~~~~ip  233 (236)
                      ++.+..  .+.+.++|+||.|...          ......+-+.+++.+++
T Consensus        54 D~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          54 DVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             CTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             cccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCC
Confidence            555432  4567889999988642          12234456677787775

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.47  E-value=0.0044  Score=48.34  Aligned_cols=36  Identities=11%  Similarity=-0.045  Sum_probs=32.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...+|+|+|+|++|...+..+...|..++..+|.+.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            456899999999999999999999999999998643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0023  Score=50.81  Aligned_cols=90  Identities=19%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh----HHHHHHHHHHhhCCCceEE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN----RAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~----Kaea~~~~L~~inp~v~I~  190 (236)
                      +.++|+|||.|..|-+.|..|++.|. +++|+|.+..    + +-|+.+...--++.    -.+.+.+.+++.  .+++.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~----~-GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~--gV~i~  113 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE----I-GGQFNIAKQIPGKEEFYETLRYYRRMIEVT--GVTLK  113 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS----S-CTTHHHHTTSTTCTTHHHHHHHHHHHHHHH--TCEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc----c-CceEEEEEeCcccchHHHHHHHHHHhhhcC--CeEEE
Confidence            55789999999999999999999997 5899986542    3 33332221111221    234455555554  34443


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      . ...++.   +...+||.||.++..
T Consensus       114 l-~~~Vt~---~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         114 L-NHTVTA---DQLQAFDETILASGI  135 (179)
T ss_dssp             E-SCCCCS---SSSCCSSEEEECCCE
T ss_pred             e-CCEEcc---cccccceeEEEeecC
Confidence            2 223332   345789999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.46  E-value=0.001  Score=52.31  Aligned_cols=36  Identities=14%  Similarity=0.040  Sum_probs=31.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ....|+|+|+|++|...+..+-..|..++.+.|.+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            346899999999999999999999999999988543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.46  E-value=0.0014  Score=50.56  Aligned_cols=35  Identities=6%  Similarity=-0.061  Sum_probs=31.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..++|+|||+|..|.++|..|++.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            34789999999999999999999999889998854

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.018  Score=43.33  Aligned_cols=89  Identities=10%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh-hCCCceEEEEecC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN-LNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~-inp~v~I~~~~~~  195 (236)
                      -+|+|+|+|.+|..+++.|...|.. ++++|.|.-.                       ..+.+.+ ....+  .+..++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~~~-----------------------~~~~~~~~~~~~~--~vi~Gd   57 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQN-VTVISNLPED-----------------------DIKQLEQRLGDNA--DVIPGD   57 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHH-----------------------HHHHHHHHHCTTC--EEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccchh-----------------------HHHHHHHhhcCCc--EEEEcc
Confidence            3689999999999999999999976 7777754311                       1111222 12233  344444


Q ss_pred             CCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         196 VDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       196 l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      .+...   ..-+..+|.||.++++......+...+++.+
T Consensus        58 ~~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~   96 (153)
T d1id1a_          58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMS   96 (153)
T ss_dssp             TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHhC
Confidence            44322   3446789999999998888888888887753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.44  E-value=0.0097  Score=45.43  Aligned_cols=74  Identities=24%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh---hCCCceEEE
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN---LNPNVEVTS  191 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~---inp~v~I~~  191 (236)
                      ++|.||| +|.+|+.+|..|+..|+. +|.|+|-+.                  .+.+++..+..|..   ....+++. 
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~------------------~~~~~~g~a~Dl~~~~~~~~~~~i~-   61 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD------------------KEDDTVGQAADTNHGIAYDSNTRVR-   61 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG------------------GHHHHHHHHHHHHHHHTTTCCCEEE-
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC------------------cccccceeecchhhcccccCCceEe-
Confidence            3689999 699999999999999985 688888321                  11245555555654   33334432 


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                       ...     .+-++++|+||.+..
T Consensus        62 -~~~-----~~~~~~aDiVvitaG   79 (142)
T d1o6za1          62 -QGG-----YEDTAGSDVVVITAG   79 (142)
T ss_dssp             -ECC-----GGGGTTCSEEEECCC
T ss_pred             -eCC-----HHHhhhcCEEEEecc
Confidence             222     234689999998865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.42  E-value=0.011  Score=42.81  Aligned_cols=86  Identities=12%  Similarity=0.067  Sum_probs=51.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh----CCCceEEEE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL----NPNVEVTSN  192 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i----np~v~I~~~  192 (236)
                      .+++|||.|.+|+|+|..|+..|.. +++++...    .+ -+++     |  ..=++.+.+.+.+.    ..+.+|+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~-Vtlve~~~----~i-l~~~-----d--~~~~~~l~~~l~~~gV~i~~~~~V~~i   88 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQ-VSVVEARE----RI-LPTY-----D--SELTAPVAESLKKLGIALHLGHSVEGY   88 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSS----SS-STTS-----C--HHHHHHHHHHHHHHTCEEETTCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccc-eEEEeeec----cc-cccc-----c--chhHHHHHHHHHhhcceEEcCcEEEEE
Confidence            5799999999999999999999985 89887421    22 2221     1  12245566677765    333445554


Q ss_pred             ecCCCc----chhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDE----ISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~----~~~~~l~~~DlVI~~~d  215 (236)
                      ......    .+.+.-=.+|.|+.|+.
T Consensus        89 ~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          89 ENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             cCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            332110    11111125788887763

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.38  E-value=0.004  Score=47.52  Aligned_cols=32  Identities=22%  Similarity=0.129  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~  148 (236)
                      .+|.|||+|.+|+.+|..|+..|.. +|.|+|-
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEec
Confidence            3688999999999999999999984 6999993

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0017  Score=50.59  Aligned_cols=34  Identities=9%  Similarity=-0.017  Sum_probs=30.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|+|+||.|..++..|...|+++|+|++.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            4578999999999999999999999999999753

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.32  E-value=0.014  Score=45.69  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=56.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhC-----CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSG-----VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~G-----Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I  189 (236)
                      |..+|.|||+|++|+..+-...+..     +.+|.|+|-|.   +-+             +-.++.+.......+...++
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~---~~~-------------~~~~~~~~~~~~~~~~~~~~   65 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK---ERQ-------------DRIAGACDVFIREKAPDIEF   65 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH---HHH-------------HHHHHHHHHHHHHHCTTSEE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh---hHH-------------HHHHHHHHHHHHHhCCCcce
Confidence            3457899999999876443332222     35788988442   111             01245555556666666676


Q ss_pred             EEEecCCCcchhhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcC
Q psy9587         190 TSNETKVDEISEEFVHGFDVVIATSCN--PNQLIKIDDFCRSKS  231 (236)
Q Consensus       190 ~~~~~~l~~~~~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~  231 (236)
                      +....     ..+-++++|+||.+...  .+.+.....+..++|
T Consensus        66 ~~~~d-----~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~G  104 (167)
T d1u8xx1          66 AATTD-----PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYG  104 (167)
T ss_dssp             EEESC-----HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTT
T ss_pred             EecCC-----hhhccCCCCEEEECCCcCCCCceeHHHhhchhcC
Confidence            66553     34567899999999764  233333334444433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.0051  Score=43.94  Aligned_cols=88  Identities=15%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             ccceEEEEcCChhH-HHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVG-AEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvG-sevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|.++|.||+| +.+|+.|...|.. ++-.|..         ..              ...+.|.+.  .+++....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~---------~~--------------~~~~~L~~~--Gi~v~~g~   60 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIA---------DG--------------VVTQRLAQA--GAKIYIGH   60 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESC---------CS--------------HHHHHHHHT--TCEEEESC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCC---------CC--------------hhhhHHHHC--CCeEEECC
Confidence            45678999999999 7779999999995 6666621         11              123456554  34443311


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                            ..+.+.+.|+||.+..-....-. -..|+++|+|+|
T Consensus        61 ------~~~~i~~~d~vV~S~AI~~~npe-l~~A~~~gipii   95 (96)
T d1p3da1          61 ------AEEHIEGASVVVVSSAIKDDNPE-LVTSKQKRIPVI   95 (96)
T ss_dssp             ------CGGGGTTCSEEEECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             ------ccccCCCCCEEEECCCcCCCCHH-HHHHHHcCCCEE
Confidence                  22345788999877532222222 334789999986

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.28  E-value=0.0063  Score=46.16  Aligned_cols=30  Identities=10%  Similarity=0.026  Sum_probs=26.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|++||+|-.|+.+++.|..+|-.++.++|
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            478999999999999999999977777766

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.24  E-value=0.0027  Score=49.63  Aligned_cols=34  Identities=6%  Similarity=-0.067  Sum_probs=28.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.+.|+|+|+||++-.++..|  .+.++|+|+..
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR   48 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIANR   48 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEECS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeehh
Confidence            46788999999999999998887  46678888653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.17  E-value=0.0022  Score=49.30  Aligned_cols=35  Identities=17%  Similarity=0.109  Sum_probs=31.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+||+|...+..+..+|..++..+|.+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            34689999999999999999999999999988854

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.09  E-value=0.0027  Score=52.42  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            58999999999999999999999899999987543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.06  E-value=0.011  Score=46.93  Aligned_cols=32  Identities=9%  Similarity=0.037  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|+|||+|..|...|..|.++|.+ +++++|..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            689999999999999999999886 79999855

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.05  E-value=0.0033  Score=50.06  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=52.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCC--CCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVN--TAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~--~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|+|+|.-|+.+|..|+..|- +++|++.|.=....++  +++..+-+. +             ++.++  +.+   
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~-~-------------~l~~~--i~~---   67 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKG-V-------------QLASN--ITF---   67 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTT-C-------------BCCTT--EEE---
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccc-c-------------ccccc--ccc---
Confidence            579999999999999999998875 5888875432111120  001000000 0             01111  211   


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHH
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDF  226 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~  226 (236)
                        +....+.++++|+||.|+.+...+..+.++
T Consensus        68 --t~~l~~a~~~ad~iiiavPs~~~~~~~~~~   97 (189)
T d1n1ea2          68 --TSDVEKAYNGAEIILFVIPTQFLRGFFEKS   97 (189)
T ss_dssp             --ESCHHHHHTTCSCEEECSCHHHHHHHHHHH
T ss_pred             --chhhhhccCCCCEEEEcCcHHHHHHHHHHH
Confidence              112345678999999999887777766654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.04  E-value=0.021  Score=47.04  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +++.++++|.|++ |+|..+|+.|+..|.. +.+.|.+.                    .+.+.+++.+.+..+..++..
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~--------------------~~l~~~~~~~~~~~~~~~~~~   59 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSS--------------------EGLEASKAAVLETAPDAEVLT   59 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhhCCCCeEEE
Confidence            3677889999954 8999999999999985 88877321                    245566677777777777777


Q ss_pred             EecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         192 NETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       192 ~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +..++++..         .+.+...|++|.+.
T Consensus        60 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          60 TVADVSDEAQVEAYVTATTERFGRIDGFFNNA   91 (258)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EeccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            766665421         12345677777654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.93  E-value=0.0034  Score=47.74  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|||+|..|...|..|++.|+.+++|++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            48999999999999999999999889999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.89  E-value=0.016  Score=43.68  Aligned_cols=30  Identities=17%  Similarity=0.058  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|.|||+|-.|+.++++|...|.. ++++|.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~   31 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSLE   31 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECCT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEcC
Confidence            589999999999999999999975 555553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.86  E-value=0.013  Score=44.77  Aligned_cols=106  Identities=21%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC--
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK--  195 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~--  195 (236)
                      +|.|||+|-.|+.+|++|+..|.. +.++|.+.-....+ .-+.    ..+..+-.+++    +.  .++-+...+..  
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~-~~~~----~~~~~~~~e~~----~~--~d~ii~~v~~~~~   69 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADV-IAAG----AETASTAKAIA----EQ--CDVIITMLPNSPH   69 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHH-HHTT----CEECSSHHHHH----HH--CSEEEECCSSHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHH-HHhh----hhhcccHHHHH----hC--CCeEEEEcCCHHH
Confidence            489999999999999999999986 77888654333333 1110    01111112222    21  22222222211  


Q ss_pred             CC-----cc-hhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         196 VD-----EI-SEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       196 l~-----~~-~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      +.     .. -...++.-++||+++ .++.....+.+.+.+.++-|+
T Consensus        70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v  116 (161)
T d1vpda2          70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML  116 (161)
T ss_dssp             HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCcee
Confidence            00     00 122334457888775 567888899999998888665

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.86  E-value=0.0064  Score=47.04  Aligned_cols=112  Identities=16%  Similarity=0.045  Sum_probs=60.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCcc---cc-CCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF---LA-PHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~---l~-~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +|.|||+|-.|+.+|++|+..|.. +.++|.+.-....+ ....   -+ ........ .   ...+........+....
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l-~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEF-MKANASAPFAGNLKAFET-M---EAFAASLKKPRKALILV   76 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHH-HHHTTTSTTGGGEEECSC-H---HHHHHHBCSSCEEEECC
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHH-HHcCCccccccchhhhhh-h---hHHHHhcccceEEEEee
Confidence            478999999999999999999986 77888654322222 1110   00 00011111 1   11222222222222211


Q ss_pred             cCCC------cchhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVD------EISEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~------~~~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I  235 (236)
                      ..-.      ......+..=+++++++ ..+.....+.+.+...++-++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~l  125 (178)
T d1pgja2          77 QAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFL  125 (178)
T ss_dssp             CCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             cCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEe
Confidence            1100      01123455557887775 567777888888888887553

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.81  E-value=0.032  Score=45.74  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +++.++|+|.|++ |+|.++|+.|+..|...+.+.+.+.    ++                  ...+.+...++..++..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~----~~------------------~~~~~~~~~~~~~~~~~   59 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE----NP------------------TALAELKAINPKVNITF   59 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC----CH------------------HHHHHHHHHCTTSEEEE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc----cH------------------HHHHHHHhhCCCCCEEE
Confidence            3678899999955 8999999999999999777765321    11                  12345677888888888


Q ss_pred             EecCCC-cch---------hhhcCCCcEEEEcCC
Q psy9587         192 NETKVD-EIS---------EEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~-~~~---------~~~l~~~DlVI~~~d  215 (236)
                      +..+++ +..         .+.+...|++|.+..
T Consensus        60 ~~~d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          60 HTYDVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeecCCCHHHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            777765 211         123457888887753

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.035  Score=44.23  Aligned_cols=37  Identities=16%  Similarity=0.107  Sum_probs=29.6

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeCCc
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~D~  150 (236)
                      .+.++|+|.| .|-+|+++++.|...|. .+++++..+.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            3556789998 67899999999999886 5788887543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.016  Score=44.68  Aligned_cols=74  Identities=14%  Similarity=-0.059  Sum_probs=43.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhC-----CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCceEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSG-----VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNVEVTS  191 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~G-----Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v~I~~  191 (236)
                      +|.|||+|++|+..+-.....+     +++|.|+|-|.                    .|++++.+...... ...++..
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~--------------------~k~~~~~d~~~~~~~~~~~~~~   61 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE--------------------EKQKIVVDFVKRLVKDRFKVLI   61 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH--------------------HHHHHHHHHHHHHHTTSSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc--------------------HHHHHHHHHHHhhhccCceEEE
Confidence            4789999999877775544332     57899988332                    23333333333222 2233333


Q ss_pred             EecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         192 NETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       192 ~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      .     ....+-++++|+||.+...
T Consensus        62 t-----~~~~~~l~~aDvVVita~~   81 (162)
T d1up7a1          62 S-----DTFEGAVVDAKYVIFQFRP   81 (162)
T ss_dssp             C-----SSHHHHHTTCSEEEECCCT
T ss_pred             e-----cCcccccCCCCEEEEeccc
Confidence            1     2245678999999998764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.77  E-value=0.016  Score=45.75  Aligned_cols=82  Identities=7%  Similarity=-0.023  Sum_probs=53.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      .+..++|+|+|+|.+|..+++.|...|+ ++..+|.+..+....     ...              .|.++.+.+.+.+.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~~~~-----~~~--------------~l~ell~~sDiv~~   98 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGPWR-----FTN--------------SLEEALREARAAVC   98 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCSSSC-----CBS--------------CSHHHHTTCSEEEE
T ss_pred             cccCceEEEeccccccccceeeeecccc-cccccccccccccee-----eee--------------chhhhhhccchhhc
Confidence            3677899999999999999999999999 588888765432111     111              14455556677666


Q ss_pred             ecCCCcch--------hhhcCCCcEEEEcC
Q psy9587         193 ETKVDEIS--------EEFVHGFDVVIATS  214 (236)
Q Consensus       193 ~~~l~~~~--------~~~l~~~DlVI~~~  214 (236)
                      .-.+++.+        .+.++.--++|++.
T Consensus        99 ~~pl~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1          99 ALPLNKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccccccccccccccceeeeccccceEEecc
Confidence            55554432        22344455666664

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0054  Score=45.23  Aligned_cols=32  Identities=16%  Similarity=-0.031  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+++|||.|-+|+|+|..|.+.|. +++|+..+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            578999999999999999999998 58898754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.026  Score=42.83  Aligned_cols=86  Identities=6%  Similarity=-0.072  Sum_probs=47.8

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|+|||||.+|.. .+..|... ++.-+.++|.+.                    .|++.+++..   +  +.      
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~--------------------~~~~~~~~~~---~--~~------   50 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR--------------------AKALPICESW---R--IP------   50 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC--------------------TTHHHHHHHH---T--CC------
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechh--------------------Hhhhhhhhcc---c--cc------
Confidence            36899999999986 46666543 444455666432                    1222233222   1  11      


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                       +.+.-.+++++.|+|+.|+.+. ....+...|.+.|++++
T Consensus        51 -~~~~~~~l~~~~D~V~I~tp~~-~h~~~~~~al~~gk~V~   89 (164)
T d1tlta1          51 -YADSLSSLAASCDAVFVHSSTA-SHFDVVSTLLNAGVHVC   89 (164)
T ss_dssp             -BCSSHHHHHTTCSEEEECSCTT-HHHHHHHHHHHTTCEEE
T ss_pred             -ccccchhhhhhcccccccccch-hccccccccccccceee
Confidence             1111233456788887777543 44555556667777775

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.006  Score=44.39  Aligned_cols=32  Identities=16%  Similarity=0.023  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++|+|||.|.+|+|+|..|.+.|. +++|++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            578999999999999999999998 69998753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.70  E-value=0.0063  Score=47.79  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=30.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ++|+|||+|-.|..+|..|+..|. +++|+|.+.+
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            579999999999999999999999 5999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0058  Score=48.66  Aligned_cols=36  Identities=22%  Similarity=0.121  Sum_probs=31.8

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ....+|.|||+|..|+.+|..+++.|.. ++++|.|.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTE   37 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCc-EEEEECCh
Confidence            3567899999999999999999999976 88999765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0062  Score=44.86  Aligned_cols=31  Identities=16%  Similarity=0.048  Sum_probs=28.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++++|||.|.+|+|+|..|+..|.. ++|++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~   54 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEF   54 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcc-eeEEEe
Confidence            5789999999999999999999997 888874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.63  E-value=0.0064  Score=44.08  Aligned_cols=30  Identities=20%  Similarity=0.146  Sum_probs=27.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ++|+|||.|.+|+|+|..|+..|.. +||++
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve   52 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTK-VTILE   52 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEECCCccceeeeeeecccccE-EEEEE
Confidence            6799999999999999999999976 88887

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.028  Score=43.76  Aligned_cols=77  Identities=10%  Similarity=0.116  Sum_probs=46.7

Q ss_pred             eEEEEcCChhHHHH--HHHHHHh-C--CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587         118 VYSTGPLTRVGAEI--AKNIILS-G--VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN  192 (236)
Q Consensus       118 ~VlIVG~GgvGsev--ak~La~~-G--Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~  192 (236)
                      +|.|||+|++|+..  +..|++. +  .++|.|+|-|.-   .+             +..+.-+.......+...++...
T Consensus         4 KI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~---~~-------------~~~~~~~~~~~~~~~~~~~i~~~   67 (171)
T d1obba1           4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE---RL-------------DAILTIAKKYVEEVGADLKFEKT   67 (171)
T ss_dssp             EEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH---HH-------------HHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch---HH-------------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            67899999999754  3334432 2  368999985421   11             01122334444556666666665


Q ss_pred             ecCCCcchhhhcCCCcEEEEcCC
Q psy9587         193 ETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       193 ~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      ..     ..+-++++|+||.+..
T Consensus        68 td-----~~eaL~dad~Vv~~~~   85 (171)
T d1obba1          68 MN-----LDDVIIDADFVINTAM   85 (171)
T ss_dssp             SC-----HHHHHTTCSEEEECCC
T ss_pred             CC-----hhhcccCCCeEeeecc
Confidence            44     2456799999998864

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.0062  Score=49.09  Aligned_cols=105  Identities=13%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCC-CCccccCCCc---CCC-hHHHHHHHHHHhhCCCceEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVN-TAQFLAPHED---IGK-NRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~-~rq~l~~~~d---IGk-~Kaea~~~~L~~inp~v~I~  190 (236)
                      +|.|||+||.||.++..|...|+.  ++..+|.|.-..+... ..-+++....   .|. ...+..++...+-.      
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~------   75 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESE------   75 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTH------
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHH------
Confidence            467899999999999999999986  4566777764443320 1112222211   111 01111111111100      


Q ss_pred             EEecCCCcchhhhcCCCcEEEEcCC-----CHHHHHHHHHHHHHcCCcEE
Q psy9587         191 SNETKVDEISEEFVHGFDVVIATSC-----NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       191 ~~~~~l~~~~~~~l~~~DlVI~~~d-----~~~~r~~In~~c~~~~ip~I  235 (236)
                             +.-.+.++++|+||.+..     .-...-.+.++|++.++++|
T Consensus        76 -------~~I~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv  118 (194)
T d1w5fa1          76 -------EKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTV  118 (194)
T ss_dssp             -------HHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred             -------HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceE
Confidence                   001345677888876642     23455688899999998876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.60  E-value=0.0075  Score=44.36  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=29.6

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +.++|+|||.|.+|+|+|..|+..|.. +++++.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~   61 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDI   61 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceE-EEEEEe
Confidence            456899999999999999999999986 899874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.59  E-value=0.0095  Score=45.84  Aligned_cols=35  Identities=11%  Similarity=-0.052  Sum_probs=31.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ...|+|+|+|++|...+..+...|..++..+|.+.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            46899999999999999999999999999988553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.59  E-value=0.0085  Score=46.57  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=19.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSG  139 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~G  139 (236)
                      .+|+|||||.+|...++.|...+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~   24 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAP   24 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCC
Confidence            46899999999999999987763

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.59  E-value=0.037  Score=42.10  Aligned_cols=32  Identities=6%  Similarity=-0.109  Sum_probs=22.5

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAE-IAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGse-vak~La~~GVg~I~LvD~  148 (236)
                      .+|+|||||..|.. .+..|...+--.+.++|.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~   34 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTR   34 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence            36899999999976 566666655445666664

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.58  E-value=0.0077  Score=44.88  Aligned_cols=35  Identities=23%  Similarity=0.070  Sum_probs=30.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~  150 (236)
                      .++|+|||+|.+|.++|..|...|.. +|+|+|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            36899999999999999999999974 799998764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.56  E-value=0.0091  Score=47.41  Aligned_cols=38  Identities=24%  Similarity=0.091  Sum_probs=32.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      +|+|||+|-+|..+|..|+..|.. +..+|.|.=...+|
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~-V~g~D~n~~~i~~l   39 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLI   39 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc-EEEEeCCHHHHHHh
Confidence            478999999999999999999975 78999886555566

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.52  E-value=0.0079  Score=44.28  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=28.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++|+|||.|.+|+|+|..|+..|.. ++|++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~   61 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVH-VSLVET   61 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCeEEEECcchhHHHHHHHhhcccce-EEEEee
Confidence            46899999999999999999999975 888874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.043  Score=44.84  Aligned_cols=79  Identities=11%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +++.++++|.|++ |+|.++|+.|+..|.. +.+.|.+.                    .|.+.+++.+...++  ++..
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~--------------------~~l~~~~~~~~~~~~--~~~~   60 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINK--------------------HGLEETAAKCKGLGA--KVHT   60 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTC--CEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcCC--cEEE
Confidence            3567889999965 8999999999999986 77777332                    244555666665544  3444


Q ss_pred             EecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         192 NETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       192 ~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +..++++..         .+.+...|++|.+.
T Consensus        61 ~~~Dvs~~~~v~~~~~~i~~~~g~idilinna   92 (244)
T d1yb1a_          61 FVVDCSNREDIYSSAKKVKAEIGDVSILVNNA   92 (244)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred             EEeeCCCHHHHHHHHHHHHHHcCCCceeEeec
Confidence            445554321         12344567776664

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.51  E-value=0.024  Score=43.60  Aligned_cols=35  Identities=11%  Similarity=0.064  Sum_probs=26.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~  150 (236)
                      ..+|+|+|||.+|..+++.|... ++.-+.++|.+.
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~   38 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRA   38 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence            45789999999999999998864 444445566553

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.50  E-value=0.0058  Score=44.79  Aligned_cols=32  Identities=9%  Similarity=0.024  Sum_probs=28.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++|+|||+|.+|+|+|..|+..|.. ++|++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID-SYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc-ceeeeh
Confidence            36799999999999999999999976 888874

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.056  Score=41.04  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh-CC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS-GV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~-GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|.|+|+ |.+|+.+|..|+.. |. .+|.|+|-+     +.                ++..+..|..............
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~-----~~----------------~~g~a~Dl~h~~~~~~~~~~~~   60 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA-----PV----------------TPGVAVDLSHIPTAVKIKGFSG   60 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS-----TT----------------HHHHHHHHHTSCSSCEEEEECS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc-----cc----------------chhHHHHHHCCccccCCcEEEc
Confidence            5789995 99999999988754 64 679998821     11                2233446666555555444322


Q ss_pred             CCCcchhhhcCCCcEEEEcCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d  215 (236)
                         ..+.+-++++|+||.+..
T Consensus        61 ---~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1          61 ---EDATPALEGADVVLISAG   78 (145)
T ss_dssp             ---SCCHHHHTTCSEEEECCS
T ss_pred             ---CCCccccCCCCEEEECCC
Confidence               223345789999998875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.45  E-value=0.0057  Score=48.33  Aligned_cols=35  Identities=14%  Similarity=0.061  Sum_probs=31.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.++|.|||+|.+|+.+|..+++.|.. ++++|.|.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            467899999999999999999999986 88999764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.42  E-value=0.0073  Score=49.20  Aligned_cols=106  Identities=10%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCce--EEEeeCCcccccCCC-CCccccCCC---cCCC-hHHHHHHHHHHhhCCCceE
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKS--VCLLDSGVVTKEDVN-TAQFLAPHE---DIGK-NRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~--I~LvD~D~Ve~sNL~-~rq~l~~~~---dIGk-~Kaea~~~~L~~inp~v~I  189 (236)
                      .+|.|||+||-||.++..|.+.|+..  +..+|.|.-..+... ..-+.....   ..|- ...+..++...+--     
T Consensus        16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~-----   90 (209)
T d2vapa1          16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESA-----   90 (209)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTH-----
T ss_pred             CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHH-----
Confidence            67788999999999999999999964  456687754444330 111122211   1111 01111111111100     


Q ss_pred             EEEecCCCcchhhhcCCCcEEEEcCC-----CHHHHHHHHHHHHHcCCcEE
Q psy9587         190 TSNETKVDEISEEFVHGFDVVIATSC-----NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       190 ~~~~~~l~~~~~~~l~~~DlVI~~~d-----~~~~r~~In~~c~~~~ip~I  235 (236)
                              +.-.+.+.++|+||.+..     .-...-.+.++|++.++++|
T Consensus        91 --------~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv  133 (209)
T d2vapa1          91 --------EEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTV  133 (209)
T ss_dssp             --------HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred             --------HHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEE
Confidence                    001234678898876642     23455678999999998875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.41  E-value=0.036  Score=44.64  Aligned_cols=99  Identities=15%  Similarity=0.063  Sum_probs=54.9

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh-hCCCceEEEE
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN-LNPNVEVTSN  192 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~-inp~v~I~~~  192 (236)
                      +.++|+|+|+ |-+|+++++.|...|.. +++++.+...               ....|+..    +.. ...  .++..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~---------------~~~~~~~~----~~~~~~~--~v~~v   59 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVV---------------SNIDKVQM----LLYFKQL--GAKLI   59 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCS---------------SCHHHHHH----HHHHHTT--TCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCcc---------------cchhHHHH----HhhhccC--CcEEE
Confidence            3456899995 78999999999999954 6555432110               01112221    222 222  34455


Q ss_pred             ecCCCcch--hhhcCCCcEEEEcCC------CH-HHHHHHHHHHHHcCCcEE
Q psy9587         193 ETKVDEIS--EEFVHGFDVVIATSC------NP-NQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       193 ~~~l~~~~--~~~l~~~DlVI~~~d------~~-~~r~~In~~c~~~~ip~I  235 (236)
                      ..++.+..  ...+.+++.++.+..      +. .....+...+...++++|
T Consensus        60 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v  111 (312)
T d1qyda_          60 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF  111 (312)
T ss_dssp             CCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEE
T ss_pred             EeecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHhcCCcEE
Confidence            55555432  456788888887652      22 334444444444455554

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.37  E-value=0.011  Score=47.67  Aligned_cols=102  Identities=11%  Similarity=0.141  Sum_probs=60.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCc--cccCCC-----cC-CChH-HHHHHHHHHhhCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQ--FLAPHE-----DI-GKNR-AKSSEARAQNLNP  185 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq--~l~~~~-----dI-Gk~K-aea~~~~L~~inp  185 (236)
                      .+|.|||+||.||.++..|...|+.  ++..+|.|.-..++. .-+  ++....     .. |.|. ...+++.-     
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~-~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~-----   75 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNI-AARTVLQLGPGVTKGLGAGANPEVGRQAALED-----   75 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSC-SCSEEEECCHHHHTTBCCCSCHHHHHHHHHHT-----
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcC-CccceeccccccccCCCCCCChHHHHHHHHHH-----
Confidence            3578899999999999999999986  456667776544443 111  111110     00 1111 11111100     


Q ss_pred             CceEEEEecCCCcchhhhcCCCcEEEEcCC-----CHHHHHHHHHHHHHcCCcEE
Q psy9587         186 NVEVTSNETKVDEISEEFVHGFDVVIATSC-----NPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       186 ~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d-----~~~~r~~In~~c~~~~ip~I  235 (236)
                                 .+.-.+.++++|+||.+..     .-...-.+.++|++.++++|
T Consensus        76 -----------~~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvv  119 (198)
T d1ofua1          76 -----------RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV  119 (198)
T ss_dssp             -----------HHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred             -----------HHHHHHHhCCCCeEEEEecCCCCccccHHHHHHHHHHHcCCCEE
Confidence                       0111346788998876642     23455679999999998876

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.055  Score=45.42  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             cccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC---Cc
Q psy9587         112 QSYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP---NV  187 (236)
Q Consensus       112 ~~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp---~v  187 (236)
                      +.|+.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+                    ..|.+.++++|....+   ..
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~--------------------~~~l~~~~~el~~~~~~~~~~   66 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRK--------------------LERLKSAADELQANLPPTKQA   66 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC--------------------HHHHHHHHHHHHHTSCTTCCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC--------------------HHHHHHHHHHHHhhhccccCc
Confidence            4678899999995 58999999999999985 7787742                    1244455555554332   34


Q ss_pred             eEEEEecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         188 EVTSNETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       188 ~I~~~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      ++..+..++++..         .+.+...|++|.+.
T Consensus        67 ~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          67 RVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eEEEEeccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            5555555555321         12234567776654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.34  E-value=0.036  Score=45.81  Aligned_cols=81  Identities=11%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC-CceEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP-NVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp-~v~I~  190 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.                    .|.+.+++.+.+... ..++.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~--------------------~~l~~~~~~i~~~~~~~~~~~   59 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNE--------------------DRLEETKQQILKAGVPAEKIN   59 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHHcCCCCcceE
Confidence            367788999995 58999999999999985 77877432                    234555666655542 34566


Q ss_pred             EEecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         191 SNETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       191 ~~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      .+..++++..         .+.+...|++|.+.
T Consensus        60 ~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          60 AVVADVTEASGQDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHcCCceEEEeec
Confidence            6666655421         12234567777653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.30  E-value=0.008  Score=48.46  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .-|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            458999999999999999999995 69999987653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.24  E-value=0.0077  Score=47.09  Aligned_cols=31  Identities=13%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|||+|..|...|..|++.|. +++|+|.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            579999999999999999999999 5999985

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.23  E-value=0.042  Score=45.04  Aligned_cols=82  Identities=13%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCceEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v~I~  190 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.                    .+.+.+++.|.+.. +..++.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~--------------------~~l~~~~~~l~~~~~~~~~~~   60 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHA--------------------ERLEETRQQILAAGVSEQNVN   60 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcCCCcCceE
Confidence            467788999995 59999999999999985 88877331                    24555666676654 334566


Q ss_pred             EEecCCCcch---------hhhcCCCcEEEEcCC
Q psy9587         191 SNETKVDEIS---------EEFVHGFDVVIATSC  215 (236)
Q Consensus       191 ~~~~~l~~~~---------~~~l~~~DlVI~~~d  215 (236)
                      .+..++++..         .+.+...|++|.+..
T Consensus        61 ~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          61 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCCCEeecccc
Confidence            6666665421         123456788887653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.22  E-value=0.013  Score=47.06  Aligned_cols=36  Identities=17%  Similarity=0.003  Sum_probs=31.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|||+|.||..+|+.|...|+. +..+|..
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~   75 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIF   75 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccCCeEEEecccccchhHHHhHhhhccc-ccccCcc
Confidence            46889999999999999999999999995 6667754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.20  E-value=0.04  Score=45.41  Aligned_cols=36  Identities=11%  Similarity=0.077  Sum_probs=30.2

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            367789999995 5999999999999998 58888843

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.19  E-value=0.025  Score=42.83  Aligned_cols=29  Identities=7%  Similarity=0.041  Sum_probs=23.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|++||||-.|+.+++.|...|- ++++.|
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~   30 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISG   30 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEEC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEc
Confidence            47899999999999999987763 466654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.18  E-value=0.011  Score=46.99  Aligned_cols=34  Identities=21%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|||+|..|..+|..|.+.|+..++|++...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3689999999999999999999998999998643

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.18  E-value=0.039  Score=41.13  Aligned_cols=30  Identities=30%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|+|+|+ |-.|..+++.+...|..-+.-+|
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id   32 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVD   32 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEEC
Confidence            5899996 99999999888876655444444

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.11  E-value=0.007  Score=46.31  Aligned_cols=35  Identities=6%  Similarity=-0.125  Sum_probs=30.4

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+ |++|..++..+...|..++.++|.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            3467999996 8999999999999999999998854

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.07  E-value=0.011  Score=46.93  Aligned_cols=32  Identities=16%  Similarity=0.002  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            579999999999999999999999 58999853

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.05  E-value=0.012  Score=43.08  Aligned_cols=32  Identities=22%  Similarity=0.074  Sum_probs=28.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++|+|||.|.+|+|+|..|+..|.. ++|++.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~-Vtlv~~   63 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYH-VKLIHR   63 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccce-EEEEec
Confidence            36799999999999999999999975 888874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.065  Score=43.74  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~   38 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRN   38 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            367789999995 58999999999999985 8887743

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.02  E-value=0.024  Score=44.35  Aligned_cols=34  Identities=12%  Similarity=-0.013  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc------eEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK------SVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg------~I~LvD~D~  150 (236)
                      .+|+|||+|..|-..|..|++.|..      .++|+|...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            5899999999999999999999953      689998643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.012  Score=43.20  Aligned_cols=31  Identities=16%  Similarity=-0.006  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|||.|-+|+|+|..|+..|.. +++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSK-TSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcE-EEEEee
Confidence            5789999999999999999999985 888874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.01  E-value=0.067  Score=44.03  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      .++.++++|.| .||+|..+|+.|+..|.. +.+.|.+.                    .|.+.++++|.+.++. ++..
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~-Vii~~r~~--------------------~~l~~~~~~l~~~~g~-~~~~   79 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKM--------------------DVLKATAEQISSQTGN-KVHA   79 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHHHSS-CEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCH--------------------HHHHHHHHHHHHhcCC-ceEE
Confidence            56889999999 679999999999999964 88877432                    2344455555554432 4445


Q ss_pred             EecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         192 NETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       192 ~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +..++.+..         .+.+...|++|.+.
T Consensus        80 ~~~D~~~~~~v~~~~~~~~~~~g~iDilvnnA  111 (294)
T d1w6ua_          80 IQCDVRDPDMVQNTVSELIKVAGHPNIVINNA  111 (294)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             EEecccChHHHHHHhhhhhhhccccchhhhhh
Confidence            555544321         12345677777664

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.038  Score=40.98  Aligned_cols=32  Identities=19%  Similarity=0.023  Sum_probs=26.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHH----hCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL----SGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~----~GVg~I~LvD~  148 (236)
                      .++++|||.|.+|+|+|..|++    .|+ ++++++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~   72 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFP   72 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecc
Confidence            4689999999999999999974    465 5888775

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.96  E-value=0.015  Score=45.31  Aligned_cols=36  Identities=14%  Similarity=0.012  Sum_probs=32.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ....|+|+|+||+|...+..+...|..+|..+|.+.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            456899999999999999999999999999999543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.96  E-value=0.068  Score=43.71  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   37 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDM   37 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467889999995 58999999999999985 888774

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.92  E-value=0.012  Score=47.97  Aligned_cols=32  Identities=9%  Similarity=0.065  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..|+|||+|.+|..+|..|++.|+ +++|+|..
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            368999999999999999999999 58898865

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.054  Score=44.14  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.                    .+.+.+++.+.+..+..++..+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~--------------------~~~~~~~~~l~~~~~~~~~~~~~   60 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNL--------------------EAGVQCKAALHEQFEPQKTLFIQ   60 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            4578888885 68999999999999985 88877432                    13344455555555555666665


Q ss_pred             cCCCcch---------hhhcCCCcEEEEcC
Q psy9587         194 TKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      .++++..         .+.+...|++|.+.
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   90 (254)
T d2gdza1          61 CDVADQQQLRDTFRKVVDHFGRLDILVNNA   90 (254)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCcCeecccc
Confidence            5555421         12234567777664

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.88  E-value=0.0081  Score=46.09  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=31.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|...+..+...|..++..+|..
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            44689999999999999999999999999998854

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.041  Score=42.60  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhC-CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSG-VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~G-Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      -+|+|+|| |-.|..+++.+.... +.-...+|...-  ..+        ..|+|.-        +......+.+.    
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~--~~~--------g~d~~~~--------~~~~~~~~~~~----   62 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS--SLL--------GSDAGEL--------AGAGKTGVTVQ----   62 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC--TTC--------SCCTTCS--------SSSSCCSCCEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccc--hhc--------cchhhhh--------hccccCCceee----
Confidence            46899996 899999999887653 222222331110  011        1222220        00001112221    


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                         ......+..+|+|||-+.+ +.-...-++|.++++|+|.
T Consensus        63 ---~~~~~~~~~~DViIDFs~p-~~~~~~~~~a~~~~~~~Vi  100 (162)
T d1diha1          63 ---SSLDAVKDDFDVFIDFTRP-EGTLNHLAFCRQHGKGMVI  100 (162)
T ss_dssp             ---SCSTTTTTSCSEEEECSCH-HHHHHHHHHHHHTTCEEEE
T ss_pred             ---ccHHHHhcccceEEEeccH-HHHHHHHHHHHhccceeEE
Confidence               1113456789999988665 4455566899999999873

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.81  E-value=0.038  Score=45.04  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=47.8

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccc-----cCCCCCccccCCCcCCChH-HHHHHHHHHhhCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTK-----EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNP  185 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~-----sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp  185 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.-+.     .+. +.+..+-..|+.... ++.+.+.+.+.+.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNL-GRRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHc-CCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            467889999995 58999999999999985 77777543211     233 333344445554432 3444444444444


Q ss_pred             CceEEEE
Q psy9587         186 NVEVTSN  192 (236)
Q Consensus       186 ~v~I~~~  192 (236)
                      .+.+-+.
T Consensus        80 ~iDilVn   86 (247)
T d2ew8a1          80 RCDILVN   86 (247)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEEE
Confidence            4444443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.80  E-value=0.016  Score=43.08  Aligned_cols=33  Identities=24%  Similarity=0.189  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++|+|||.|-+|+|+|..|...|.. +++++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcc-eeeeeec
Confidence            46899999999999999999999986 9998853

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.80  E-value=0.048  Score=42.20  Aligned_cols=76  Identities=13%  Similarity=-0.014  Sum_probs=44.7

Q ss_pred             eEEEEcCChhHH--HHHHHHHH---hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH----HHHHhhCCCce
Q psy9587         118 VYSTGPLTRVGA--EIAKNIIL---SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE----ARAQNLNPNVE  188 (236)
Q Consensus       118 ~VlIVG~GgvGs--evak~La~---~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~----~~L~~inp~v~  188 (236)
                      +|.|||+|++|.  .++..+..   ..+++|.|+|-|.-                  +.|.+++-    ......+..++
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~------------------~~~~~~~d~~~~~~~~~~~~~~~   64 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEG------------------KEKLEIVGALAKRMVEKAGVPIE   64 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGG------------------HHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCcc------------------HHHHHHHHHHHHHHHHhcCCCce
Confidence            578999997764  34334333   23578999885431                  11222222    22344556666


Q ss_pred             EEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587         189 VTSNETKVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       189 I~~~~~~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                      +......     .+-++++|+||.+...
T Consensus        65 ~~~~td~-----~~al~gaDvVv~ta~~   87 (169)
T d1s6ya1          65 IHLTLDR-----RRALDGADFVTTQFRV   87 (169)
T ss_dssp             EEEESCH-----HHHHTTCSEEEECCCT
T ss_pred             eeecCCc-----hhhcCCCCEEEEcccc
Confidence            6655442     3457899999999864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.09  Score=43.46  Aligned_cols=31  Identities=16%  Similarity=0.276  Sum_probs=24.9

Q ss_pred             ceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|.|+. -+|+++++.|...|.. ++.+|.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHE-VTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            578999955 5999999999999875 666663

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.058  Score=44.13  Aligned_cols=79  Identities=14%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+                    ..+.+.+++.+++...  ++..
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~--------------------~~~~~~~~~~l~~~g~--~~~~   64 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN--------------------ADAANHVVDEIQQLGG--QAFA   64 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESC--------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC--------------------HHHHHHHHHHHHHcCC--cEEE
Confidence            467789999995 59999999999999986 7777732                    1244555666666543  3444


Q ss_pred             EecCCCcch---------hhhcCCCcEEEEcC
Q psy9587         192 NETKVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       192 ~~~~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +..++++..         .+.+...|++|.+.
T Consensus        65 ~~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnA   96 (255)
T d1fmca_          65 CRCDITSEQELSALADFAISKLGKVDILVNNA   96 (255)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEeeeCC
Confidence            555554321         12234567777664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.72  E-value=0.017  Score=42.78  Aligned_cols=32  Identities=9%  Similarity=-0.061  Sum_probs=28.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..+++|||.|-+|+|+|..|...|.. +++++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~   57 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEM   57 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCE-EEEEEe
Confidence            36789999999999999999999986 888764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.71  E-value=0.015  Score=43.59  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=30.5

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +..+|+||| +|-.|+.+|++|...|.. ++++|.+.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYP-ISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCC-cEeccccc
Confidence            446899999 899999999999999995 88888664

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.61  E-value=0.038  Score=42.29  Aligned_cols=30  Identities=13%  Similarity=-0.031  Sum_probs=24.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+|+|.| .|.+|+++++.|+..|-. ++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDK-FVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTT-CEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCc-EEEEE
Confidence            6799999 689999999999999964 34444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.58  E-value=0.1  Score=39.53  Aligned_cols=83  Identities=5%  Similarity=-0.078  Sum_probs=48.8

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      .+|.|+|+ |.+|+.++..|+..++- ...+++-+.+             ..+....|.+..+..+........-.....
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL-------------EIPQAMKALEGVVMELEDCAFPLLAGLEAT   71 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-------------CCGGGHHHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHh-------------ccccchhhHcCchhhhhccccccccccccC
Confidence            47999997 99999999999987763 1111111111             012223456666666666554322222211


Q ss_pred             CCCcchhhhcCCCcEEEEcCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d  215 (236)
                         ....+-++++|+||.+.+
T Consensus        72 ---~~~~~~~~~advViitaG   89 (154)
T d1y7ta1          72 ---DDPKVAFKDADYALLVGA   89 (154)
T ss_dssp             ---SCHHHHTTTCSEEEECCC
T ss_pred             ---CchhhhcccccEEEeecC
Confidence               123456899999998875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.57  E-value=0.018  Score=46.10  Aligned_cols=34  Identities=15%  Similarity=0.021  Sum_probs=30.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +.++|+|||+|..|...|..|++.|. +++|+|..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            44689999999999999999999997 59999854

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.57  E-value=0.045  Score=44.76  Aligned_cols=78  Identities=8%  Similarity=0.054  Sum_probs=47.7

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccc--------cCCCCCccccCCCcCCChH-HHHHHHHHHh
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTK--------EDVNTAQFLAPHEDIGKNR-AKSSEARAQN  182 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~--------sNL~~rq~l~~~~dIGk~K-aea~~~~L~~  182 (236)
                      .++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.-..        ... +.+..+-..|+..+. ++.+.+.+.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            467889999995 48999999999999985 88888654221        112 223333344554433 4444555555


Q ss_pred             hCCCceEEEE
Q psy9587         183 LNPNVEVTSN  192 (236)
Q Consensus       183 inp~v~I~~~  192 (236)
                      .+..+.+-+.
T Consensus        84 ~~g~iDilVn   93 (260)
T d1h5qa_          84 DLGPISGLIA   93 (260)
T ss_dssp             HSCSEEEEEE
T ss_pred             HhCCCcEecc
Confidence            4444444443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.56  E-value=0.05  Score=41.33  Aligned_cols=78  Identities=14%  Similarity=-0.020  Sum_probs=46.2

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV  189 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I  189 (236)
                      .+|.|||+ |.+|+.++..|+..++-      .|.++|-+                  -.+.|++.+.-.+.........
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~------------------~~~~~~~~l~~~~~~~~~~~~~   65 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT------------------PMMGVLDGVLMELQDCALPLLK   65 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG------------------GGHHHHHHHHHHHHHTCCTTEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc------------------cchhhhhhhhhhhccccccccc
Confidence            47899995 99999999999876652      24444411                  1123555665555543322221


Q ss_pred             EEEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         190 TSNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       190 ~~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .....   ....+.++++|+||.+..
T Consensus        66 ~~~~~---~~~~~~~~~~dvVVitag   88 (154)
T d5mdha1          66 DVIAT---DKEEIAFKDLDVAILVGS   88 (154)
T ss_dssp             EEEEE---SCHHHHTTTCSEEEECCS
T ss_pred             ccccC---cccccccCCceEEEEecc
Confidence            11111   113456789999998864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.54  E-value=0.023  Score=41.36  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=27.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+++|||.|-+|+|+|..|+..|.. ++++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~   52 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLE   52 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEE
Confidence            6789999999999999999999997 66665

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.54  E-value=0.13  Score=40.08  Aligned_cols=80  Identities=9%  Similarity=-0.028  Sum_probs=49.9

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGV-K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV  187 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GV-g-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v  187 (236)
                      +..+|.|+|+ |.+|..++..|+...+ |     .|+|+|-+.                  .+.+++..+-.+.......
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~------------------~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER------------------SFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG------------------GHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc------------------ccchhcchhhhhccccccc
Confidence            4468999996 9999999999998665 2     344444221                  2235566666666654433


Q ss_pred             eEEEEecCCCcchhhhcCCCcEEEEcCC
Q psy9587         188 EVTSNETKVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       188 ~I~~~~~~l~~~~~~~l~~~DlVI~~~d  215 (236)
                      .-.....   ....+-++++|+||.+.+
T Consensus        85 ~~~~~~~---~~~~~~~~~aDvVvi~ag  109 (175)
T d7mdha1          85 LREVSIG---IDPYEVFEDVDWALLIGA  109 (175)
T ss_dssp             EEEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred             ccCcccc---ccchhhccCCceEEEeec
Confidence            2222111   123456799999998875

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.53  E-value=0.024  Score=40.97  Aligned_cols=32  Identities=19%  Similarity=-0.137  Sum_probs=28.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~  148 (236)
                      .+|+|||.|.+|+|+|..|...|..  +++|++.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~   54 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYR   54 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEec
Confidence            5789999999999999999988875  6899874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.52  E-value=0.02  Score=41.23  Aligned_cols=33  Identities=9%  Similarity=-0.064  Sum_probs=28.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..++|+|||.|-+|+|+|..|++.|.. +++++.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~   53 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVR   53 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchh-heEeec
Confidence            347899999999999999999999866 777764

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=94.49  E-value=0.11  Score=43.11  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=33.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|=|.|-||..+++.|...|..-+.+.|.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~   69 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD   69 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5678899999999999999999999999988887754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.46  E-value=0.018  Score=42.19  Aligned_cols=84  Identities=13%  Similarity=-0.010  Sum_probs=54.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      ++|+|+|+|.+|.++++.|...   ++.++|.|.-.                    +    +.+...  ++  ..+.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~~--------------------~----~~~~~~--~~--~~i~Gd~   49 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDENV--------------------R----KKVLRS--GA--NFVHGDP   49 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTTH--------------------H----HHHHHT--TC--EEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchHH--------------------H----HHHHhc--Cc--ccccccc
Confidence            3588999999999999999543   35677644321                    1    112221  22  3444444


Q ss_pred             Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587         197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS  231 (236)
Q Consensus       197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~  231 (236)
                      +...   ..-+.+++.+|.++++......+...+++.+
T Consensus        50 ~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~   87 (129)
T d2fy8a1          50 TRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKID   87 (129)
T ss_dssp             TSHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHC
Confidence            4322   3346789999999988888888887777763

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.45  E-value=0.072  Score=44.79  Aligned_cols=89  Identities=17%  Similarity=0.096  Sum_probs=54.7

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +++.++++|.|++ |+|-++|+.|+..|.. +.+.|.+.- ...+ .         -...+++.+.+.+......+.  .
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~~~-~~~~-~---------~~~~~~~~~~~~~~~~~~~~~--~   69 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGD-FKGV-G---------KGSSAADKVVEEIRRRGGKAV--A   69 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBC-TTSC-B---------CCSHHHHHHHHHHHHTTCEEE--E
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCch-hhhh-h---------hhHHHHHHHHHHHhhcccccc--c
Confidence            4577889999955 9999999999999985 888774421 1111 1         123466677777766554322  2


Q ss_pred             EecCCCcc------hhhhcCCCcEEEEcCC
Q psy9587         192 NETKVDEI------SEEFVHGFDVVIATSC  215 (236)
Q Consensus       192 ~~~~l~~~------~~~~l~~~DlVI~~~d  215 (236)
                      ........      ..+.+...|++|.+..
T Consensus        70 d~~~~~~~~~~v~~~~~~~G~iDiLVnNAG   99 (302)
T d1gz6a_          70 NYDSVEAGEKLVKTALDTFGRIDVVVNNAG   99 (302)
T ss_dssp             ECCCGGGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             ccchHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            22222211      1234567899887753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.45  E-value=0.038  Score=45.20  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=48.1

Q ss_pred             cccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCChH-HHHHHHHHHhhCC
Q psy9587         112 QSYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNP  185 (236)
Q Consensus       112 ~~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp  185 (236)
                      |+++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.-..    +.+ .....+-..|+..+. ++.+.+++.+.+.
T Consensus         2 G~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (244)
T d1nffa_           2 GRLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAEL-ADAARYVHLDVTQPAQWKAAVDTAVTAFG   79 (244)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh-hCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            5678899999995 58999999999999995 88887543111    112 222233345565544 3444444444444


Q ss_pred             CceEEEE
Q psy9587         186 NVEVTSN  192 (236)
Q Consensus       186 ~v~I~~~  192 (236)
                      .+.+-+.
T Consensus        80 ~idilin   86 (244)
T d1nffa_          80 GLHVLVN   86 (244)
T ss_dssp             CCCEEEE
T ss_pred             CCeEEEE
Confidence            4444443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.43  E-value=0.017  Score=46.06  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=31.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|||+|.||..+|+.|...|+. +..+|+.
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   81 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPY   81 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccCc
Confidence            46788999999999999999999999887 5566754

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.34  E-value=0.014  Score=47.02  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve  152 (236)
                      .+|-|||+||-||.++..|...|+.  ++..+|.|.-.
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~   39 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQA   39 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHH
Confidence            3567899999999999999999985  45566766433

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.28  E-value=0.049  Score=42.03  Aligned_cols=34  Identities=3%  Similarity=-0.179  Sum_probs=22.2

Q ss_pred             ccceEEEEcCChhHHH-HHHHHHHhCC-ceEE-EeeC
Q psy9587         115 KIYVYSTGPLTRVGAE-IAKNIILSGV-KSVC-LLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGse-vak~La~~GV-g~I~-LvD~  148 (236)
                      |..+|+|||+|..|.. .+..+...+- -+|+ ++|.
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~   38 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSR   38 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECS
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence            3457899999999987 4677765332 2333 5554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.26  E-value=0.018  Score=43.76  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=28.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ...+|+|+|+|++|..++..+-..|. ++..+|.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~   60 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDID   60 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCC-ccceecch
Confidence            44689999999999999999999995 67777743

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.22  E-value=0.14  Score=42.70  Aligned_cols=80  Identities=11%  Similarity=0.063  Sum_probs=49.6

Q ss_pred             ccceEEEEcCCh-hHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTR-VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~Gg-vGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +.++|+|.|+.| +|+++++.|...|..-+.+++       |+              .|.+-+........+.-......
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR-------~~--------------~~~~~~~~~~~~~~~~~~~~~~~   68 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-------SA--------------SKLANLQKRWDAKYPGRFETAVV   68 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-------SH--------------HHHHHHHHHHHHHSTTTEEEEEC
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC-------Cc--------------hhHHHHHHhhhccccccccEEEe
Confidence            358899999766 999999999999976444432       11              12333344444444443444455


Q ss_pred             cCCCcch--hhhcCCCcEEEEcCC
Q psy9587         194 TKVDEIS--EEFVHGFDVVIATSC  215 (236)
Q Consensus       194 ~~l~~~~--~~~l~~~DlVI~~~d  215 (236)
                      .++.+..  .+.+.++|.|+.+..
T Consensus        69 ~Dl~~~~~~~~~~~~~~~v~~~a~   92 (342)
T d1y1pa1          69 EDMLKQGAYDEVIKGAAGVAHIAS   92 (342)
T ss_dssp             SCTTSTTTTTTTTTTCSEEEECCC
T ss_pred             ccccchhhhhhhcccchhhhhhcc
Confidence            5554432  456788999886653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.19  E-value=0.025  Score=45.09  Aligned_cols=37  Identities=16%  Similarity=-0.032  Sum_probs=31.5

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+..++|+|||+|.||..+++.|...|+. +..+|+-.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~   78 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYP   78 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCCcc
Confidence            46778999999999999999999999988 55667643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.16  E-value=0.022  Score=41.69  Aligned_cols=32  Identities=13%  Similarity=-0.025  Sum_probs=28.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++++|||+|-+|.|+|..|++.|. ++|++..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            3678999999999999999999997 5888764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.15  E-value=0.097  Score=41.52  Aligned_cols=34  Identities=24%  Similarity=0.171  Sum_probs=29.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ..++|+|||+|..|-..|..|++.|.. ++|+|..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~-v~l~E~~   81 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT-VHLTDTA   81 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc-eeeEeec
Confidence            557899999999999999999999985 8888743

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.15  E-value=0.053  Score=42.35  Aligned_cols=34  Identities=3%  Similarity=0.076  Sum_probs=26.1

Q ss_pred             hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         201 EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+++++.|+||+|+....++.....+. +.|++.|
T Consensus        74 ~~~~~~vDvViEcTG~f~~~~~~~~hl-~~G~k~V  107 (172)
T d2czca2          74 NDLLEKVDIIVDATPGGIGAKNKPLYE-KAGVKAI  107 (172)
T ss_dssp             HHHHTTCSEEEECCSTTHHHHHHHHHH-HHTCEEE
T ss_pred             hhhhccCCEEEECCCCCCCHHHHHHHH-HcCCCEE
Confidence            445678999999999999888886554 5566655

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.06  E-value=0.14  Score=38.40  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=17.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHh
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILS  138 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~  138 (236)
                      +|+|+|+ |-.|..+++.+...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~   22 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA   22 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS
T ss_pred             CEEEECCCCHHHHHHHHHHHhC
Confidence            5889995 89999999987654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.05  E-value=0.12  Score=41.99  Aligned_cols=34  Identities=24%  Similarity=0.088  Sum_probs=28.7

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..++++|.|+ +|+|.++|+.|+..|.. +.+.|.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~-V~~~~r   42 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSH-VICISR   42 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEEC
Confidence            56788899895 59999999999999974 788774

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.00  E-value=0.037  Score=43.55  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=53.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhC-CceEEEeeCCcccccCCCCCccccCCCc-C-CChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSG-VKSVCLLDSGVVTKEDVNTAQFLAPHED-I-GKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~G-Vg~I~LvD~D~Ve~sNL~~rq~l~~~~d-I-Gk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      +|+|.|+|.+|..+++.|...+ +.-+.+-|...-....     .++...+ + +......   ...+.  ...      
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~--~i~------   66 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAF-----IAHRRGIRIYVPQQSIK---KFEES--GIP------   66 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHH-----HHHHTTCCEECCGGGHH---HHHTT--TCC------
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHH-----HhcccCcceeccCccce---ecccc--cee------
Confidence            6899999999999999998643 3333443432111100     0111111 1 1111110   01110  000      


Q ss_pred             CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                       +.......+.++|+||+|+.....+.....+ .+.|+++|+
T Consensus        67 -v~g~~~~~~~~vDiViecTG~f~~~e~a~~h-l~~G~KvIi  106 (178)
T d1b7go1          67 -VAGTVEDLIKTSDIVVDTTPNGVGAQYKPIY-LQLQRNAIF  106 (178)
T ss_dssp             -CCCCHHHHHHHCSEEEECCSTTHHHHHHHHH-HHTTCEEEE
T ss_pred             -cCCchhhhhhcCCEEEECCCCcCCHHHHHHH-HHcCCEEEE
Confidence             1111244556899999999998877765544 466777764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.99  E-value=0.14  Score=41.46  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=30.0

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +++.++++|.| .+|+|.++|+.|+..|.. +.+.|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            46788999999 568999999999999986 778774

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.99  E-value=0.065  Score=43.39  Aligned_cols=36  Identities=8%  Similarity=0.020  Sum_probs=30.2

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++.++++|.|++ |+|.++|+.|+..|.. +.+.+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r~   38 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDRE   38 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            5788999999955 7999999999999985 6677654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.98  E-value=0.31  Score=33.77  Aligned_cols=81  Identities=17%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             eEEEEcCChhHH-HHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587         118 VYSTGPLTRVGA-EIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV  196 (236)
Q Consensus       118 ~VlIVG~GgvGs-evak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l  196 (236)
                      +|-++|.||+|- .+|+.|...|.. ++-.|        + ...              ...++|++..  +++..  .  
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD--------~-~~~--------------~~t~~L~~~G--i~i~~--g--   52 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGND-VYGSN--------I-EET--------------ERTAYLRKLG--IPIFV--P--   52 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEC--------S-SCC--------------HHHHHHHHTT--CCEES--S--
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCe-EEEEe--------C-CCC--------------hhHHHHHHCC--CeEEe--e--
Confidence            578899999986 778999999985 55544        3 111              1234576664  44421  1  


Q ss_pred             CcchhhhcCCCcEEEEcC----CCHHHHHHHHHHHHHcCCcEE
Q psy9587         197 DEISEEFVHGFDVVIATS----CNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       197 ~~~~~~~l~~~DlVI~~~----d~~~~r~~In~~c~~~~ip~I  235 (236)
                        .+.+.+.+.|+||.+.    ||++     -..|+++|||++
T Consensus        53 --h~~~~i~~~d~vV~SsAI~~~npe-----l~~A~~~gIpv~   88 (89)
T d1j6ua1          53 --HSADNWYDPDLVIKTPAVRDDNPE-----IVRARMERVPIE   88 (89)
T ss_dssp             --CCTTSCCCCSEEEECTTCCTTCHH-----HHHHHHTTCCEE
T ss_pred             --ecccccCCCCEEEEecCcCCCCHH-----HHHHHHcCCCcc
Confidence              2234457899998875    4444     456789999985

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.98  E-value=0.042  Score=42.95  Aligned_cols=35  Identities=14%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587         201 EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF  236 (236)
Q Consensus       201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~  236 (236)
                      .++++++|+||+|+.....+.....+. +.|+++|+
T Consensus        73 ~~~~~~vDvViEcTG~f~~~~~~~~hl-~~G~K~vi  107 (171)
T d1cf2o1          73 DDMLDEADIVIDCTPEGIGAKNLKMYK-EKGIKAIF  107 (171)
T ss_dssp             HHHHHTCSEEEECCSTTHHHHHHHHHH-HTTCEEEE
T ss_pred             hHhhcCCCEEEEccCCCCCHHHHHHHH-HcCCCEEE
Confidence            455678999999999998888877765 55777663

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.98  E-value=0.19  Score=40.91  Aligned_cols=36  Identities=22%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            467889999994 58999999999999976 7887753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.97  E-value=0.025  Score=44.02  Aligned_cols=33  Identities=12%  Similarity=-0.126  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-----eEEEeeCCc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-----SVCLLDSGV  150 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-----~I~LvD~D~  150 (236)
                      +|+|||+|-+|..+|..|+..|..     +.++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            589999999999999999999975     577777554

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.077  Score=44.77  Aligned_cols=31  Identities=16%  Similarity=0.084  Sum_probs=24.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|.| .|-||+++++.|...|. +++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5688999 45599999999999996 4666664

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.92  E-value=0.025  Score=42.11  Aligned_cols=31  Identities=10%  Similarity=0.039  Sum_probs=26.7

Q ss_pred             eEEEE-cCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTG-PLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIV-G~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|.|+ |+|++|..+|+.|+..|.. +++++.|
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~-V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            47788 7999999999999999998 6677755

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.85  E-value=0.2  Score=40.57  Aligned_cols=75  Identities=19%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++++|.|+ +|+|.++|+.|+..|.. +.+.|.+                    ..+.+.+++.+.+...  ++..+..+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~-V~~~~r~--------------------~~~l~~~~~~i~~~g~--~~~~~~~D   58 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFA-VAIADYN--------------------DATAKAVASEINQAGG--HAVAVKVD   58 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC--------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCE-EEEEECC--------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            35577785 58999999999999985 7887732                    1244556666665543  44555555


Q ss_pred             CCcch---------hhhcCCCcEEEEcC
Q psy9587         196 VDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       196 l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +++..         .+.+...|++|.+.
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          59 VSDRDQVFAAVEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccEEEecc
Confidence            54321         12345677777654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.029  Score=42.27  Aligned_cols=31  Identities=10%  Similarity=-0.050  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      =|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            37899999999999999999997 58888864

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.78  E-value=0.043  Score=46.67  Aligned_cols=37  Identities=16%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|=|.|-||+.+|+.|...|..-+.+.|.+
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            5788899999999999999999999999888887754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.77  E-value=0.036  Score=43.77  Aligned_cols=35  Identities=20%  Similarity=0.034  Sum_probs=31.0

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ....|+|+|+|++|...+..+...|..++.++|.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            34689999999999999999989999999999954

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.60  E-value=0.027  Score=42.06  Aligned_cols=31  Identities=19%  Similarity=0.060  Sum_probs=26.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .+|+|||.|.+|+|+|..|.+ | .++++++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEecc
Confidence            378999999999999999976 3 379999754

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.58  E-value=0.1  Score=42.50  Aligned_cols=75  Identities=8%  Similarity=0.086  Sum_probs=44.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++|+|.| +|-||+.+++.|...|.. ++.+|       |+ .+.          .+.    +.+..+...-.++.+..+
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~~-V~~id-------~~-~~~----------~~~----~~~~~~~~~~~~~~i~~D   57 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGID-LIVFD-------NL-SRK----------GAT----DNLHWLSSLGNFEFVHGD   57 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE-------CC-CST----------THH----HHHHHHHTTCCCEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEE-------CC-Ccc----------cch----hHHHHhhccCCcEEEEcc
Confidence            3688888 555999999999999974 66677       44 332          011    122222122245556667


Q ss_pred             CCcch--hhhcC--CCcEEEEcC
Q psy9587         196 VDEIS--EEFVH--GFDVVIATS  214 (236)
Q Consensus       196 l~~~~--~~~l~--~~DlVI~~~  214 (236)
                      +.+..  .+.++  ++|+||-+.
T Consensus        58 i~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_          58 IRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             TTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCHHHHHHHHHhcCCceEEeec
Confidence            66532  33443  459998775

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.57  E-value=0.28  Score=39.84  Aligned_cols=35  Identities=11%  Similarity=0.041  Sum_probs=29.8

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++.++++|.|++ |+|.++|+.|+..|.. +.+.|.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   40 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSR   40 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            4678899999954 8999999999999985 888774

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=0.033  Score=43.11  Aligned_cols=24  Identities=13%  Similarity=0.109  Sum_probs=20.4

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHh
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILS  138 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~  138 (236)
                      |...|+|+|+|.||+.+++.|...
T Consensus         3 k~i~I~l~G~G~VG~~l~~~l~~~   26 (168)
T d1ebfa1           3 KVVNVAVIGAGVVGSAFLDQLLAM   26 (168)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred             CEEEEEEEeCCHHHHHHHHHHHHh
Confidence            345789999999999999999853

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.44  E-value=0.11  Score=41.91  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             ccccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEE
Q psy9587         113 SYKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       113 ~lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~  190 (236)
                      .++.++++|.|++ |+|.++|+.|+..|.. +.+.|.+.-...++     +.-..|+..+. ++.+.+.+.+.+..+.+-
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiL   77 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGL-----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVL   77 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTS-----EEEECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcCc-----eEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence            3678899999955 8999999999999976 77888765444444     44456776654 566667777666566666


Q ss_pred             EEec
Q psy9587         191 SNET  194 (236)
Q Consensus       191 ~~~~  194 (236)
                      +.+.
T Consensus        78 VnnA   81 (237)
T d1uzma1          78 VSNA   81 (237)
T ss_dssp             EEEC
T ss_pred             Eeee
Confidence            5543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.25  Score=40.61  Aligned_cols=31  Identities=13%  Similarity=0.063  Sum_probs=25.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.|+ |-+|+.+++.|+..|--++..+|.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            4788985 559999999999999657888874

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.41  E-value=0.067  Score=40.25  Aligned_cols=23  Identities=13%  Similarity=-0.064  Sum_probs=20.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGV  140 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GV  140 (236)
                      +|.+||+|-.|+.+|++|+..|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~   24 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP   24 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC
Confidence            58999999999999999998764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.39  E-value=0.051  Score=44.44  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=36.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK  153 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~  153 (236)
                      +++..+|+++|+|+.|.-+++.|...|.+++.++|.+-+=.
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            46778999999999999999999999999999999775443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.33  E-value=0.034  Score=43.72  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=32.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      .++..+|+|+|+|.+|.++++.|...|+. +..+|....
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   78 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRL   78 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCC
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeeccc
Confidence            46778999999999999999999999986 777776543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.042  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.112  Sum_probs=28.9

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|||+|-.|-..|..|+..|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            45679999999999999999999998 4888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.24  E-value=0.12  Score=40.42  Aligned_cols=43  Identities=26%  Similarity=0.107  Sum_probs=34.4

Q ss_pred             cccCccccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         107 NWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       107 l~g~~~~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.+.....+..+|+|+|+|-+|...+....++|.. ++++|-+.
T Consensus        23 Llgg~~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~-V~~~D~~~   65 (168)
T d1pjca1          23 LLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDINV   65 (168)
T ss_dssp             CTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             EecCCCCCCCcEEEEECCChHHHHHHHHHhhCCCE-EEEEeCcH
Confidence            33333345678999999999999999999999965 89998543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.22  E-value=0.04  Score=44.36  Aligned_cols=31  Identities=19%  Similarity=0.118  Sum_probs=27.5

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      |+|||+|-+|+.+|..|++.|.. ++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~-V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            78999999999999999999974 88888643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.18  E-value=0.03  Score=43.67  Aligned_cols=30  Identities=20%  Similarity=0.168  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .|+|||+|..|...|..|++.|.. ++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~-V~vlE~   31 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTD-AVLLES   31 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC-EEEEec
Confidence            489999999999999999999984 889885

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.08  E-value=0.039  Score=46.12  Aligned_cols=34  Identities=18%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      .++|+|||+|..|..+|+.|.+.|.+ +++|++..
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            36799999999999999999998874 79998855

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.065  Score=42.01  Aligned_cols=37  Identities=11%  Similarity=-0.006  Sum_probs=31.4

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++.++|+|+|+|.+|..+++.|...|+. +..+|.+.
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~   77 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIEN   77 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeeccccc
Confidence            46778999999999999999999988887 66667654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.07  E-value=0.19  Score=39.65  Aligned_cols=33  Identities=18%  Similarity=0.007  Sum_probs=26.6

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++|+|+|+ |-+|+.+++.|...|. +++.++.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~   36 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRE   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECC
Confidence            357899995 7899999999999996 46666643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.04  E-value=0.076  Score=41.17  Aligned_cols=34  Identities=6%  Similarity=0.006  Sum_probs=29.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEe
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLL  146 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~Lv  146 (236)
                      .++.++|+|||+|..|..+|..|+..+.....+.
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            4678999999999999999999999998765554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.03  E-value=0.064  Score=40.18  Aligned_cols=33  Identities=12%  Similarity=0.002  Sum_probs=27.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..+|+|+|+|++|..++..+...|. ++.++|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            45689999999999999999888888 4666663

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.01  E-value=0.068  Score=39.34  Aligned_cols=87  Identities=10%  Similarity=0.064  Sum_probs=52.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+|+|+|+|.+|..++..|-. .|..-+.++|+|.-   -. ++. +.                      +++|-.. .
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~---k~-G~~-I~----------------------Gi~V~~~-~   54 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE---KV-GRP-VR----------------------GGVIEHV-D   54 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT---TT-TCE-ET----------------------TEEEEEG-G
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH---hc-CCE-EC----------------------CEEEecH-H
Confidence            3478999999999999987643 45566788897752   22 333 11                      2233211 1


Q ss_pred             CCCcchhhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         195 KVDEISEEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       195 ~l~~~~~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                      .+    .++. +..++++.|..+ ..+..|.+.|.+.|++-|
T Consensus        55 ~l----~~~~~~~i~iai~~i~~-~~~~~I~d~l~~~gIk~I   91 (126)
T d2dt5a2          55 LL----PQRVPGRIEIALLTVPR-EAAQKAADLLVAAGIKGI   91 (126)
T ss_dssp             GH----HHHSTTTCCEEEECSCH-HHHHHHHHHHHHHTCCEE
T ss_pred             HH----HHHHhhcccEEEEeCCH-HHHHHHHHHHHHcCCCEE
Confidence            11    1222 345666766665 445567778888888744

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.00  E-value=0.044  Score=46.10  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .++|+|||+|-.|..+|..|+..|. +++|++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk   33 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQ   33 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEEC
Confidence            4679999999999999999999986 5888883

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.99  E-value=0.063  Score=40.22  Aligned_cols=35  Identities=17%  Similarity=0.081  Sum_probs=29.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGV  150 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~  150 (236)
                      ..+|+|||.|.+|+|+|..|.+.|.. ++++++...
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            45799999999999999999999986 566666543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.94  E-value=0.036  Score=42.34  Aligned_cols=32  Identities=9%  Similarity=-0.099  Sum_probs=26.9

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ..+|+|.| +|++|..++..+...|...|.+++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~   58 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAG   58 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeec
Confidence            46889878 599999999999999998776654

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=92.90  E-value=0.31  Score=37.99  Aligned_cols=34  Identities=15%  Similarity=-0.011  Sum_probs=27.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      |.++++|+|+||-|-+++..+-..|...+.++|+
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd   34 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDD   34 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCC
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcC
Confidence            3467899999999999999999999988888874

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=92.87  E-value=0.05  Score=43.07  Aligned_cols=37  Identities=11%  Similarity=0.055  Sum_probs=31.0

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .++.++|+|||+|.+|..+++.|...|+. +..+|...
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~   80 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHR   80 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSC
T ss_pred             eecccceEEeecccchHHHHHHHHhhccc-cccccccc
Confidence            45778999999999999999999999988 55667544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.81  E-value=0.32  Score=39.21  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK  195 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~  195 (236)
                      ++++|.| .+|+|.++|+.|+..|.. +.+.|.+.                    .+.+.+++.|++...  ++..+..+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~-V~i~~r~~--------------------~~l~~~~~~l~~~g~--~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLR-VFVCARGE--------------------EGLRTTLKELREAGV--EADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH--------------------HHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCH--------------------HHHHHHHHHHHhcCC--cEEEEEee
Confidence            4667778 558999999999999986 77877431                    245556666665543  45556656


Q ss_pred             CCcch---------hhhcCCCcEEEEcC
Q psy9587         196 VDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       196 l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      +++..         .+.+...|++|.+.
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            55421         22345677777664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.77  E-value=0.053  Score=42.77  Aligned_cols=30  Identities=27%  Similarity=0.130  Sum_probs=27.0

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      |+|||+|..|...|..|++.|.. +.|+|..
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~-V~liEk~   34 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGAN-VLLLDKG   34 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            78999999999999999999985 8888854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.069  Score=42.83  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=31.3

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .+|.++++|.|+ +|+|.++|+.|+..|.. +.++|.+.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~   39 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPN   39 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            368889999995 58999999999999995 88888653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.48  E-value=0.093  Score=37.46  Aligned_cols=32  Identities=13%  Similarity=-0.227  Sum_probs=26.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC--ceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV--KSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV--g~I~LvD~  148 (236)
                      ++|+|||.|.+|+|+|..|+..+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            578999999999999999987743  36888874

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.45  E-value=0.16  Score=40.51  Aligned_cols=33  Identities=12%  Similarity=0.132  Sum_probs=21.6

Q ss_pred             ccceEEEEcCChhHH-HHHHHHHHh-CCceEEEee
Q psy9587         115 KIYVYSTGPLTRVGA-EIAKNIILS-GVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~GgvGs-evak~La~~-GVg~I~LvD  147 (236)
                      +..+|.|||||..|. .++..+... ++.-+.++|
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d   66 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS   66 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEEC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEec
Confidence            456889999999996 466666544 333333555

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.40  E-value=0.2  Score=37.59  Aligned_cols=87  Identities=9%  Similarity=0.080  Sum_probs=50.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhC--CceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSG--VKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~G--Vg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+|+|||+ |-+|.++++.|...+  .-+|.++-                .....|+.        +....+...     
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~----------------s~~~~Gk~--------i~~~~~~~~-----   53 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA----------------SAESAGQR--------MGFAESSLR-----   53 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE----------------CTTTTTCE--------EEETTEEEE-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe----------------ecccCCcc--------eeeccccch-----
Confidence            46899996 779999999998654  33444442                22233431        001111111     


Q ss_pred             cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587         194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL  235 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I  235 (236)
                        ......+.+.++|+++.|+.+..+..+..+ +.+.++.+|
T Consensus        54 --~~~~~~~~~~~~d~vf~a~p~~~s~~~~~~-~~~~g~~VI   92 (144)
T d2hjsa1          54 --VGDVDSFDFSSVGLAFFAAAAEVSRAHAER-ARAAGCSVI   92 (144)
T ss_dssp             --CEEGGGCCGGGCSEEEECSCHHHHHHHHHH-HHHTTCEEE
T ss_pred             --hccchhhhhccceEEEecCCcchhhhhccc-cccCCceEE
Confidence              111123446789999999877666665554 456666654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.28  E-value=0.12  Score=42.10  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r   36 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            46678888884 58999999999999984 778774

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.26  E-value=0.22  Score=40.12  Aligned_cols=66  Identities=9%  Similarity=0.089  Sum_probs=50.3

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHh---CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCce
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILS---GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVE  188 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~---GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~  188 (236)
                      .++.++++|.|+ +|+|-++|+.|++.   |. ++.++|.+                    ..+.+.+++.|...++..+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~--------------------~~~l~~~~~~l~~~~~~~~   61 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARS--------------------ESMLRQLKEELGAQQPDLK   61 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESC--------------------HHHHHHHHHHHHHHCTTSE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECC--------------------HHHHHHHHHHHHhhcCCce
Confidence            356777888786 49999999999974   43 46776621                    2456778889999999999


Q ss_pred             EEEEecCCCcc
Q psy9587         189 VTSNETKVDEI  199 (236)
Q Consensus       189 I~~~~~~l~~~  199 (236)
                      +..+..+++..
T Consensus        62 ~~~~~~Dvs~~   72 (259)
T d1oaaa_          62 VVLAAADLGTE   72 (259)
T ss_dssp             EEEEECCTTSH
T ss_pred             EEEEEccCCCH
Confidence            99988888753

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.43  Score=35.88  Aligned_cols=28  Identities=11%  Similarity=0.127  Sum_probs=20.5

Q ss_pred             hhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         202 EFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       202 ~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      +.++++|++|.|+.+..+.....+++..
T Consensus        61 ~~~~~~DivF~a~~~~~s~~~~~~~~~~   88 (146)
T d1t4ba1          61 EALKALDIIVTCQGGDYTNEIYPKLRES   88 (146)
T ss_dssp             HHHHTCSEEEECSCHHHHHHHHHHHHHT
T ss_pred             hhhhcCcEEEEecCchHHHHhhHHHHhc
Confidence            3468899999999877777666665543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.42  Score=39.44  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=24.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|+|.| .|-+|+++++.|+..|. +++++|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d   31 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEE
Confidence            378888 56699999999999995 477777

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.10  E-value=0.089  Score=39.84  Aligned_cols=33  Identities=3%  Similarity=-0.032  Sum_probs=27.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +.|+|||.|.+|+++|..|.+.|.. .|+++...
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            4589999999999999999999986 56665443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.09  E-value=0.091  Score=40.38  Aligned_cols=32  Identities=9%  Similarity=0.033  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D  149 (236)
                      +|+|||.|-+|.++|..|.+.+.+ +|++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            589999999999999999999886 69999754

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.09  E-value=0.53  Score=37.65  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=21.5

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCc
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVK  141 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg  141 (236)
                      .+|+|.|+ +|+|.++|+.|+..|..
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~   27 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARH   27 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTT
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCcc
Confidence            35778885 59999999999999987

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.09  E-value=0.17  Score=41.27  Aligned_cols=78  Identities=18%  Similarity=0.073  Sum_probs=47.9

Q ss_pred             cccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCCh-HHHHHHHHHHhhCCCc
Q psy9587         114 YKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNV  187 (236)
Q Consensus       114 lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v  187 (236)
                      ++.++++|.|++ |+|.++|+.|+..|.. +.+.|.+.-+.    ..+ +.+..+-..|+... -++.+.+.+.+.+..+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh-CCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence            677899999955 8999999999999996 88888543211    122 22333334555443 3444555554444444


Q ss_pred             eEEEEe
Q psy9587         188 EVTSNE  193 (236)
Q Consensus       188 ~I~~~~  193 (236)
                      .+-+.+
T Consensus        81 DilVnn   86 (254)
T d1hdca_          81 DGLVNN   86 (254)
T ss_dssp             CEEEEC
T ss_pred             cEEEec
Confidence            544443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.39  Score=39.74  Aligned_cols=76  Identities=18%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      ++.++|+-||||. | .++..++++|..+++-+|...                     .+..+++...+.+-.-+|+...
T Consensus        34 ~~~~~VLDiGcG~-G-~lsl~aa~~Ga~~V~aid~s~---------------------~~~~a~~~~~~~~~~~~i~~~~   90 (311)
T d2fyta1          34 FKDKVVLDVGCGT-G-ILSMFAAKAGAKKVLGVDQSE---------------------ILYQAMDIIRLNKLEDTITLIK   90 (311)
T ss_dssp             TTTCEEEEETCTT-S-HHHHHHHHTTCSEEEEEESST---------------------HHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCcCEEEEECCCC-C-HHHHHHHHcCCCEEEEEeCHH---------------------HHHHHHHHHHHhCCCccceEEE
Confidence            4668999999983 4 367788899999998888321                     1333455555555556677777


Q ss_pred             cCCCcchhhhcCCCcEEEEc
Q psy9587         194 TKVDEISEEFVHGFDVVIAT  213 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~  213 (236)
                      ....+.. .-...+|+|+..
T Consensus        91 ~~~~~l~-~~~~~~D~Ivse  109 (311)
T d2fyta1          91 GKIEEVH-LPVEKVDVIISE  109 (311)
T ss_dssp             SCTTTSC-CSCSCEEEEEEC
T ss_pred             eeHHHhc-CccccceEEEEe
Confidence            6654432 113579999863

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.01  E-value=0.13  Score=41.91  Aligned_cols=36  Identities=22%  Similarity=0.097  Sum_probs=30.1

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.| .+|+|.++|+.|+..|.. +.+.|.+
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~   51 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYAN   51 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCC
Confidence            46788999999 669999999999999987 6666644

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.13  Score=43.70  Aligned_cols=39  Identities=18%  Similarity=0.042  Sum_probs=32.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCC----------ceEEEeeCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGV----------KSVCLLDSGVV  151 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GV----------g~I~LvD~D~V  151 (236)
                      ++...+|++.|+|+.|.-+++.|+.+++          ++|.++|.+-+
T Consensus        22 ~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          22 PISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            4566789999999999999999887765          47999998753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.056  Score=44.93  Aligned_cols=30  Identities=17%  Similarity=0.080  Sum_probs=26.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      -|+|||+|-.|+.+|..|+..|. +++|+|.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk   32 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEK   32 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEEC
Confidence            47899999999999999999996 5888885

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.84  E-value=0.46  Score=38.81  Aligned_cols=96  Identities=8%  Similarity=0.103  Sum_probs=54.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCC-----ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS  191 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GV-----g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~  191 (236)
                      +|+|.| .|-||+++++.|+..|.     .++..+|.-.....-.                      .+........++.
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~   59 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA----------------------NLAPVDADPRLRF   59 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG----------------------GGGGGTTCTTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh----------------------HhhhhhcCCCeEE
Confidence            467788 67799999999999775     3566666432211110                      1112222335556


Q ss_pred             EecCCCcch--hhhcCCCcEEEEcCC-----------------CHHHHHHHHHHHHHcCCc-EE
Q psy9587         192 NETKVDEIS--EEFVHGFDVVIATSC-----------------NPNQLIKIDDFCRSKSKI-SL  235 (236)
Q Consensus       192 ~~~~l~~~~--~~~l~~~DlVI~~~d-----------------~~~~r~~In~~c~~~~ip-~I  235 (236)
                      +..+.....  ......+|+|+.+..                 |......+-+.|++++++ +|
T Consensus        60 ~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I  123 (322)
T d1r6da_          60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV  123 (322)
T ss_dssp             EECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             EEeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEE
Confidence            665554432  445677888876642                 122234566788887764 44

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.83  E-value=0.092  Score=40.41  Aligned_cols=31  Identities=16%  Similarity=0.019  Sum_probs=27.6

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      |+|||+|..|...|..+++.|. +++|++.+.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            6889999999999999999997 488888764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.74  E-value=0.22  Score=39.84  Aligned_cols=69  Identities=13%  Similarity=0.061  Sum_probs=45.7

Q ss_pred             ccccceEEEEcC-C--hhHHHHHHHHHHhCCceEEEeeCCcccc-----cCCCCCccccCCCcCCCh-HHHHHHHHHHhh
Q psy9587         113 SYKIYVYSTGPL-T--RVGAEIAKNIILSGVKSVCLLDSGVVTK-----EDVNTAQFLAPHEDIGKN-RAKSSEARAQNL  183 (236)
Q Consensus       113 ~lk~~~VlIVG~-G--gvGsevak~La~~GVg~I~LvD~D~Ve~-----sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~i  183 (236)
                      .++.++|+|.|+ |  |+|.++|+.|+..|.. +.+.+.|..+.     +-+ +.....-..|+... -.+.+.+.+.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhc
Confidence            468889999995 4  5999999999999975 77877665332     223 44444445566543 344555555443

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.68  E-value=0.13  Score=41.85  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=30.2

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGAR-VAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            357788999995 69999999999999975 8888753

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=91.67  E-value=0.23  Score=42.08  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=32.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHh----------CCceEEEeeCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILS----------GVKSVCLLDSGVV  151 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~----------GVg~I~LvD~D~V  151 (236)
                      .++..+|+|.|+|+.|.-+++.|+.+          |.++|.++|.+-+
T Consensus        22 ~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          22 RLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            46677899999999999999999866          5578999997754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.63  E-value=0.52  Score=38.73  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             ccceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.++|||.| +|-+|+++++.|...|-. +..+|
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d   47 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLD   47 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEE
Confidence            446889888 778999999999999985 66677

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.58  E-value=0.1  Score=40.67  Aligned_cols=33  Identities=12%  Similarity=-0.098  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .-|+|||+|..|.+.|..+++.|.. ++|+|.+.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~-V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIP-TVLVEGQA   38 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCC-EEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            4578999999999999999999985 88888764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.54  E-value=0.086  Score=42.69  Aligned_cols=36  Identities=11%  Similarity=-0.049  Sum_probs=30.6

Q ss_pred             ccccceEEEEcC-C--hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-T--RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-G--gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .|+.++++|.|+ |  |+|.++|+.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~   40 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLN   40 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESS
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            468899999996 4  7999999999999998 6777754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.079  Score=42.55  Aligned_cols=29  Identities=24%  Similarity=0.150  Sum_probs=26.8

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      |+|||+|-.|...|..|++.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            7899999999999999999998 5889885

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.092  Score=40.65  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      .=|+|||+|..|.+.|..+++.|.. +.|+|.+.
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~k-V~iiE~~~   35 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQK-CALIEAKE   35 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC-EEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCE-EEEEeccC
Confidence            3478999999999999999999975 88888764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.35  E-value=0.11  Score=40.04  Aligned_cols=30  Identities=13%  Similarity=-0.092  Sum_probs=26.5

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      |+|||+|..|...|..+++.|.. ++|+|..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~k-V~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFK-TTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCC-EEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence            78999999999999999999985 7777753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.30  E-value=0.14  Score=41.59  Aligned_cols=78  Identities=18%  Similarity=0.133  Sum_probs=46.3

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCCh-HHHHHHHHHHhhCCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKN-RAKSSEARAQNLNPN  186 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~  186 (236)
                      +++.++++|.| .+|+|.++|+.|+..|.. +.+.|.+.-..    ..+ +.+..+-..|+... -++.+.+.+.+.+..
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh-CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            46778999999 558999999999999986 77877543211    122 22223333455433 244444455444444


Q ss_pred             ceEEEE
Q psy9587         187 VEVTSN  192 (236)
Q Consensus       187 v~I~~~  192 (236)
                      +.+-+.
T Consensus        81 iDilVn   86 (253)
T d1hxha_          81 LNVLVN   86 (253)
T ss_dssp             CCEEEE
T ss_pred             CCeEEe
Confidence            444443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.30  E-value=0.28  Score=39.86  Aligned_cols=37  Identities=27%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D  149 (236)
                      .++.++|+|-|+|-||..+|+.|+. .|..-+.+.|.+
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~   65 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR   65 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETT
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCC
Confidence            4678899999999999999999985 698877777743

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.29  E-value=0.11  Score=42.43  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|-|+|.||+++|+.|...|.. +..+|.|
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~~   71 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVN   71 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeeccc
Confidence            57889999999999999999999999976 5566643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.26  E-value=0.6  Score=38.50  Aligned_cols=30  Identities=13%  Similarity=0.192  Sum_probs=24.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +.|+|.| +|-+|+++++.|+..|.. ++.+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEE
Confidence            4688888 667999999999999965 67776

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.25  E-value=0.18  Score=41.19  Aligned_cols=34  Identities=18%  Similarity=0.040  Sum_probs=28.7

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++.++++|.| .+|+|.++|+.|+..|.. +.+.|.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r   39 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYR   39 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            6778899998 569999999999999985 667663

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.20  E-value=0.099  Score=42.87  Aligned_cols=37  Identities=16%  Similarity=0.060  Sum_probs=32.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|=|.|-||+.+|+.|...|..-+.+.|.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            4688999999999999999999999998877777643

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.06  E-value=0.88  Score=37.37  Aligned_cols=31  Identities=13%  Similarity=0.086  Sum_probs=24.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCc-eEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVK-SVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg-~I~LvD  147 (236)
                      .+|+|.| .|=||+.++..|...|-. +++.+|
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            3588999 677999999999999864 355555

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.04  E-value=0.25  Score=37.33  Aligned_cols=34  Identities=9%  Similarity=-0.006  Sum_probs=24.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhC-CceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSG-VKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~G-Vg~I~LvD~D  149 (236)
                      ..+|+|||+|..|...+..|.... +..+.++|.+
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            357899999999999888877543 3446666543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.02  E-value=0.14  Score=41.82  Aligned_cols=36  Identities=17%  Similarity=0.053  Sum_probs=30.8

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~   39 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN   39 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35788999999 56899999999999998 58888854

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.11  Score=41.51  Aligned_cols=36  Identities=8%  Similarity=0.008  Sum_probs=30.3

Q ss_pred             ccccceEEEEcCC---hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++|+|.|++   |+|..+|+.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~   40 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   40 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCC
Confidence            4688999999865   6999999999999988 6677754

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.91  E-value=0.2  Score=40.90  Aligned_cols=37  Identities=24%  Similarity=0.153  Sum_probs=31.8

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D  149 (236)
                      .++.++|+|-|.|-||+.+|+.|+. .|..-+.+.|.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            3688999999999999999999986 688888887754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.13  Score=39.62  Aligned_cols=32  Identities=16%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      |+|||.|..|.+.|..+++.|.. +.|+|.+.+
T Consensus         6 viIIG~GpaG~~aA~~aar~G~k-V~vIEk~~~   37 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGAR-AAVVESHKL   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESSCT
T ss_pred             EEEECCCHHHHHHHHHHHHCCCE-EEEEeccCC
Confidence            68999999999999999999975 888887654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.86  E-value=0.43  Score=36.55  Aligned_cols=24  Identities=8%  Similarity=-0.018  Sum_probs=21.2

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGV  140 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GV  140 (236)
                      ++|+|.|+ |-+|.++++.|...|-
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~   27 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPT   27 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC
Confidence            57899996 8899999999998875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.83  E-value=0.11  Score=39.87  Aligned_cols=35  Identities=9%  Similarity=-0.120  Sum_probs=29.2

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +...|+|||.|..|.+.|.+|++.|.. ..++|...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            346799999999999999999999997 55667443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.81  E-value=0.14  Score=42.02  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++.++|+|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAK-VAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            357789999995 59999999999999984 8888754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.77  E-value=0.16  Score=38.36  Aligned_cols=33  Identities=9%  Similarity=-0.072  Sum_probs=27.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|...++.+-..|+. +..+|.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~   59 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISR   59 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCEEEEECCCCcchhHHHHhhhcccc-cccccc
Confidence            457899999999999999998899985 556674

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.15  Score=41.09  Aligned_cols=36  Identities=8%  Similarity=0.001  Sum_probs=30.3

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++++|.| .+|+|.++|+.|+..|.. +.+.|.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~   40 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECC
Confidence            36778999999 559999999999999985 8887754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.67  E-value=0.093  Score=42.84  Aligned_cols=33  Identities=15%  Similarity=0.039  Sum_probs=27.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHH-----hCCceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIIL-----SGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~-----~GVg~I~LvD~D~  150 (236)
                      .=|+|||+|.+|+.+|..|+.     .|+. ++|+|...
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC
Confidence            458999999999999999974     6776 88988643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.17  Score=40.88  Aligned_cols=37  Identities=16%  Similarity=0.049  Sum_probs=31.0

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +++.++++|.| .+|+|.++|+.|+..|. ++.++|.+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            46788889888 56999999999999997 588888654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.64  E-value=0.13  Score=40.14  Aligned_cols=35  Identities=23%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+..++|+|+|+|.+|.++++.|...|+. +..+|+
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~-v~~~d~   75 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAY-VVAYDP   75 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             cccceeeeeccccchhHHHHHHhhhccce-EEeecC
Confidence            46778999999999999999999988875 666664

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.48  E-value=0.13  Score=42.10  Aligned_cols=36  Identities=14%  Similarity=0.033  Sum_probs=30.2

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~-V~~~~r~   41 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARN   41 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            467889999995 58999999999999984 7777744

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.38  E-value=0.17  Score=39.18  Aligned_cols=35  Identities=23%  Similarity=0.085  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      .=|+|||.|+.|-.+|.+++++|-.++.|+|...+
T Consensus         4 YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            44789999999999999999999999999986544

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.37  E-value=0.5  Score=40.46  Aligned_cols=74  Identities=11%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             cceEEEEcCChhHHHHHHHH-HHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNI-ILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~L-a~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+++|||+|..+-.-++.+ ...++.+|.++|.+                    ..+++.+++++++ .+.++++....
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~--------------------~~~~~~~~~~l~~-~~g~~v~~~~s  186 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD--------------------PLATAKLIANLKE-YSGLTIRRASS  186 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS--------------------HHHHHHHHHHHTT-CTTCEEEECSS
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecC--------------------hHHHHHHHHhhhh-ccCCCceecCC
Confidence            46889999999999888866 46678888887633                    2356667777754 44566654322


Q ss_pred             CCCcchhhhcCCCcEEEEcCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSC  215 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d  215 (236)
                           ..+.++++|+|+.|+-
T Consensus       187 -----~~eav~~ADIi~t~Ta  202 (340)
T d1x7da_         187 -----VAEAVKGVDIITTVTA  202 (340)
T ss_dssp             -----HHHHHTTCSEEEECCC
T ss_pred             -----HHHHHhcCCceeeccc
Confidence                 3466788999998874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.36  E-value=0.14  Score=40.87  Aligned_cols=32  Identities=19%  Similarity=0.089  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .-|+|||+|..|...|..|++.|.. +.|+|..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~   36 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNG   36 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            4589999999999999999999975 7888854

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.35  E-value=0.11  Score=41.06  Aligned_cols=41  Identities=12%  Similarity=-0.073  Sum_probs=34.2

Q ss_pred             ccccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         111 SQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       111 ~~~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .+.....+|+|+|+|-+|...+..-.++|.. ++++|-+.-.
T Consensus        24 ~g~V~pa~VvViGaGvaG~~Aa~~A~~lGA~-V~v~D~~~~~   64 (183)
T d1l7da1          24 AGTVPPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAAT   64 (183)
T ss_dssp             TEEECCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTT
T ss_pred             cCCcCCcEEEEEcCcHHHHHHHHHHHHcCCE-EEEEeccHHH
Confidence            3356778999999999999999999999995 9999965433

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.31  E-value=0.16  Score=40.90  Aligned_cols=36  Identities=19%  Similarity=0.099  Sum_probs=30.0

Q ss_pred             ccccceEEEEcCC---hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      .++.++++|.|++   |+|.++|+.|+..|.. +.+.|.+
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~   43 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQA   43 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCc
Confidence            4678899999975   7999999999999986 6776643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.28  E-value=0.15  Score=41.59  Aligned_cols=33  Identities=24%  Similarity=0.106  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      =|+|||.|..|...|..|+..|.+ +.|+|...+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAK-VILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            379999999999999999999975 888897654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.19  E-value=0.19  Score=40.80  Aligned_cols=77  Identities=19%  Similarity=0.129  Sum_probs=48.5

Q ss_pred             ccccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcc--cc-cCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCc
Q psy9587         113 SYKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVV--TK-EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNV  187 (236)
Q Consensus       113 ~lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~V--e~-sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v  187 (236)
                      .++.++++|.| .+|+|.++|+.|+..|.. +.+.|.+.-  +. +.+ +..+ + ..|+.... ++.+.+.+.+.+..+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~-~~~~-~-~~Dv~~~~~v~~~~~~~~~~~G~i   77 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEGKEVAEAI-GGAF-F-QVDLEDERERVRFVEEAAYALGRV   77 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTHHHHHHHH-TCEE-E-ECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHc-CCeE-E-EEeCCCHHHHHHHHHHHHHhcCCC
Confidence            46788999999 559999999999999984 788875421  11 122 2221 2 34665543 455555555555555


Q ss_pred             eEEEEe
Q psy9587         188 EVTSNE  193 (236)
Q Consensus       188 ~I~~~~  193 (236)
                      .+-+.+
T Consensus        78 DiLVnn   83 (248)
T d2d1ya1          78 DVLVNN   83 (248)
T ss_dssp             CEEEEC
T ss_pred             CeEEEe
Confidence            555543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.18  E-value=0.18  Score=40.65  Aligned_cols=77  Identities=13%  Similarity=-0.016  Sum_probs=49.1

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCChH-HHHHHHHHHhhCCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPN  186 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~  186 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+.-..    +.+ +..+  -..|+..+. ++.+.+.+.+.+..
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~~~l~~~~~~~-~~~~--~~~Dv~~~~~v~~~~~~~~~~~g~   77 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAAEAV-GAHP--VVMDVADPASVERGFAEALAHLGR   77 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTT-TCEE--EECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHc-CCeE--EEEecCCHHHHHHHHHHHHHhcCC
Confidence            357788999995 58999999999999985 88888653211    233 3222  235666544 45555555555555


Q ss_pred             ceEEEEe
Q psy9587         187 VEVTSNE  193 (236)
Q Consensus       187 v~I~~~~  193 (236)
                      +.+-+.+
T Consensus        78 iDilVnn   84 (242)
T d1ulsa_          78 LDGVVHY   84 (242)
T ss_dssp             CCEEEEC
T ss_pred             ceEEEEC
Confidence            5555544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.77  Score=37.05  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             ceE-EEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         117 YVY-STGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       117 ~~V-lIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ++| +|-| .+|||-++|+.|+..|-.++.+.+.+                    ..|.+.+++.|++..+.+.  .+..
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~--------------------~~~~~~~~~~l~~~~~~~~--~~~~   60 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD--------------------VTRGQAAVQQLQAEGLSPR--FHQL   60 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS--------------------HHHHHHHHHHHHHTTCCCE--EEEC
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC--------------------HHHHHHHHHHHHhcCCcEE--EEEE
Confidence            455 4556 56999999999998865678876632                    2356677777777766543  4455


Q ss_pred             CCCcch---------hhhcCCCcEEEEcC
Q psy9587         195 KVDEIS---------EEFVHGFDVVIATS  214 (236)
Q Consensus       195 ~l~~~~---------~~~l~~~DlVI~~~  214 (236)
                      ++++..         .+.+...|++|...
T Consensus        61 Dvs~~~sv~~~~~~~~~~~g~iDiLVnNA   89 (275)
T d1wmaa1          61 DIDDLQSIRALRDFLRKEYGGLDVLVNNA   89 (275)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             ecCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            554321         12345678888664

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.13  E-value=0.14  Score=42.81  Aligned_cols=31  Identities=13%  Similarity=-0.067  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ..|+|||+|..|-.+|..|...|+ .++|+|.
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            568999999999999999999999 4888885

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.19  Score=40.86  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      +++.++++|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~   39 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKD   39 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            467889999995 69999999999999985 8888854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.95  E-value=0.19  Score=38.03  Aligned_cols=30  Identities=13%  Similarity=0.061  Sum_probs=27.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEe
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLL  146 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~Lv  146 (236)
                      .+|+|||.|-+|.+.|..+.+.|..+++++
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            468999999999999999999999999886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.18  Score=37.97  Aligned_cols=33  Identities=12%  Similarity=-0.067  Sum_probs=27.8

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ...+|+|+|+|++|...++.+-..|...+ ++|.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~   62 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTT   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccch-hhcc
Confidence            34689999999999999999999999876 4553

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.91  E-value=0.2  Score=40.07  Aligned_cols=42  Identities=10%  Similarity=0.005  Sum_probs=33.1

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV  156 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL  156 (236)
                      ++.++|+|.|+ +|+|.++|+.|+..|.. +.+.|.+.-.....
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~~l~~~   44 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLKRS   44 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHhc
Confidence            57789999995 68999999999999985 88888764333344

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.14  Score=41.72  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             cccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++++|.|++ |+|-++|+.|+..|.. +.++|.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~-Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            577899999965 8999999999999975 8887753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=89.83  E-value=0.13  Score=42.43  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=25.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      =|+|||.|.-|+.+|..|+..|.+ +.|++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~k-VlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYK-VAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCe-EEEEec
Confidence            378999999999999999999985 666664

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=89.75  E-value=0.6  Score=37.32  Aligned_cols=53  Identities=26%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      +++|.|+ +|+|.++|+.|+..|.. +.+.|.          |         ...+++.+++.|...++...+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~-V~i~~~----------~---------~~~~~~~~~~~l~~~~~~~~~~   57 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYA-VCLHYH----------R---------SAAEANALSATLNARRPNSAIT   57 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEES----------S---------CHHHHHHHHHHHHHHSTTCEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC----------C---------CHHHHHHHHHHHHhhcCCceEE
Confidence            4456675 59999999999999986 666551          1         1236788899999888764443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.62  E-value=0.19  Score=38.83  Aligned_cols=31  Identities=10%  Similarity=-0.122  Sum_probs=27.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .=|+|||+|..|...|..+++.|.. +.|+|.
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~k-V~lie~   36 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFN-TACVEK   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            4578999999999999999999986 777774

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.61  E-value=0.37  Score=38.27  Aligned_cols=36  Identities=8%  Similarity=-0.155  Sum_probs=28.9

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .++|+|.|+ ||+|.++++.|+..|.. +.++|...-+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~   38 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENE   38 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            468899995 68999999999999985 6677755433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.3  Score=39.31  Aligned_cols=77  Identities=13%  Similarity=0.057  Sum_probs=45.4

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCc
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNV  187 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v  187 (236)
                      ++.++++|.| .+|+|.++|+.|+..|.. +.+.|.+.=..    +.+ +.+..+-..|+.... ++.+.+.+.+.+..+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAISDYL-GANGKGLMLNVTDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHh-CCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence            5778889988 559999999999999985 67777542111    111 112222234554433 344555555555444


Q ss_pred             eEEEE
Q psy9587         188 EVTSN  192 (236)
Q Consensus       188 ~I~~~  192 (236)
                      .+-+.
T Consensus        80 DilVn   84 (243)
T d1q7ba_          80 DILVN   84 (243)
T ss_dssp             SEEEE
T ss_pred             ceehh
Confidence            44443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.54  E-value=0.21  Score=41.20  Aligned_cols=35  Identities=9%  Similarity=-0.206  Sum_probs=28.6

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      +.++|+|.|+ |-||++++..|+..|.. +..+|...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCC
Confidence            5688999995 45999999999999975 77777543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.31  E-value=0.26  Score=39.84  Aligned_cols=30  Identities=23%  Similarity=0.057  Sum_probs=25.9

Q ss_pred             cccceEEEEc-CChhHHHHHHHHHHhCCceE
Q psy9587         114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSV  143 (236)
Q Consensus       114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I  143 (236)
                      |+.++|+|.| .+|+|.++|+.|+..|..-+
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vv   34 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVV   34 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE
Confidence            5678899998 55899999999999999954

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.30  E-value=0.19  Score=40.88  Aligned_cols=34  Identities=12%  Similarity=0.106  Sum_probs=29.2

Q ss_pred             ccccceEEEEcCC---hhHHHHHHHHHHhCCceEEEee
Q psy9587         113 SYKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       113 ~lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD  147 (236)
                      +++.++++|.|++   |+|.++|+.|+..|.. +.+.+
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~   41 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGT   41 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            5788999999986   7999999999999988 55655

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.30  E-value=0.19  Score=39.24  Aligned_cols=31  Identities=13%  Similarity=-0.083  Sum_probs=27.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      =|+|||+|+.|...|..|++.|. ++.|+|..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~   38 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERY   38 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            37899999999999999999998 57888753

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=89.27  E-value=0.059  Score=40.07  Aligned_cols=19  Identities=0%  Similarity=-0.290  Sum_probs=16.4

Q ss_pred             EEEEcCChhHHHHHHHHHH
Q psy9587         119 YSTGPLTRVGAEIAKNIIL  137 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~  137 (236)
                      |.+||+|-+|..++++|..
T Consensus         2 IgfIG~G~mg~~l~~~L~~   20 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD   20 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-
T ss_pred             EEEEeCcHHHHHHHHHHHh
Confidence            5789999999999999865

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.77  E-value=0.18  Score=40.19  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=25.2

Q ss_pred             EEEEcCC-hhHHHHHHHHHHhCCceEEEee
Q psy9587         119 YSTGPLT-RVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       119 VlIVG~G-gvGsevak~La~~GVg~I~LvD  147 (236)
                      |+|.|+. =+|+++++.|+..|..+++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            6788854 5999999999999988899887

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.76  E-value=0.25  Score=39.81  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++.++++|.|+ +|+|..+|+.|+..|.. +.+.|.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~   38 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRT   38 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            57788999995 58999999999999976 7777743

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.52  E-value=0.19  Score=41.85  Aligned_cols=29  Identities=17%  Similarity=-0.024  Sum_probs=25.8

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      |+|||.|..|+.+|..|+.+|.. +.|++.
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~-VlvLEa   33 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQ-TLMLEM   33 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCe-EEEEec
Confidence            78999999999999999999985 667775

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.43  E-value=0.67  Score=36.14  Aligned_cols=89  Identities=16%  Similarity=0.117  Sum_probs=53.4

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+.++||=||||+ | ..+..|+..|. +++-+|...    +.                .+.+++++.+.++.  ++.+.
T Consensus        40 ~~~~~iLDiGcGt-G-~~~~~l~~~~~-~v~gvD~s~----~m----------------i~~a~~~~~~~~~~--i~~~~   94 (251)
T d1wzna1          40 REVRRVLDLACGT-G-IPTLELAERGY-EVVGLDLHE----EM----------------LRVARRKAKERNLK--IEFLQ   94 (251)
T ss_dssp             SCCCEEEEETCTT-C-HHHHHHHHTTC-EEEEEESCH----HH----------------HHHHHHHHHHTTCC--CEEEE
T ss_pred             CCCCEEEEeCCCC-C-ccchhhcccce-EEEEEeecc----cc----------------cccccccccccccc--chhee
Confidence            3456899999986 5 44567888987 588777332    11                34566667776664  44455


Q ss_pred             cCCCcchhhhcCCCcEEEEcCC-----C-HHHHHHHHHHHHH
Q psy9587         194 TKVDEISEEFVHGFDVVIATSC-----N-PNQLIKIDDFCRS  229 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~d-----~-~~~r~~In~~c~~  229 (236)
                      ....+..  +-..||+|+++..     + ......|.++++.
T Consensus        95 ~d~~~l~--~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~  134 (251)
T d1wzna1          95 GDVLEIA--FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEA  134 (251)
T ss_dssp             SCGGGCC--CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHH
T ss_pred             hhhhhcc--cccccchHhhhhhhhhcCChHHHHHHHHHHHHH
Confidence            5443322  2257999988643     2 2334555555553

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.32  E-value=0.06  Score=41.78  Aligned_cols=31  Identities=13%  Similarity=-0.034  Sum_probs=26.6

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ..|+|.| +|+||+..++..-..|...+..++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~   63 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC   63 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceeccc
Confidence            5789999 699999999999999999877654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.31  E-value=0.28  Score=37.37  Aligned_cols=31  Identities=16%  Similarity=-0.042  Sum_probs=27.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      =|+|||.|..|...|.++++.|.+ +.|+|..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~-V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLK-TALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            378999999999999999999976 7777754

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.14  E-value=1.8  Score=35.95  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=24.4

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +|+|.| +|=+|+++++.|...+=-+++.+|.
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            478888 5559999999998755456889884

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=88.12  E-value=0.22  Score=40.82  Aligned_cols=36  Identities=14%  Similarity=-0.036  Sum_probs=31.1

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKED  155 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sN  155 (236)
                      |+|||.|..|...|..+++.|.. +.|++.+.+.-.|
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~~~~g~   43 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRSH   43 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCC-EEEECSSCGGGSG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCC-EEEEecCCCCCCc
Confidence            89999999999999999999986 8888887765443

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.00  E-value=0.26  Score=41.50  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=27.1

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHhCCceEEEeeCC
Q psy9587         118 VYSTGPLTR-VGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       118 ~VlIVG~Gg-vGsevak~La~~GVg~I~LvD~D  149 (236)
                      +|+|.|++| +|+++++.|+..|...+..+|..
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            478898554 99999999999999888888854

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.2  Score=34.18  Aligned_cols=34  Identities=9%  Similarity=-0.077  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      ++|+|+|.|-+|..++..-...|+. +.++|+|.=
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCCC
Confidence            5789999999999999999999998 778887653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.80  E-value=0.21  Score=37.91  Aligned_cols=34  Identities=12%  Similarity=-0.091  Sum_probs=29.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      |...|+|||.|..|.+.|..|++.|.. .+|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            556899999999999999999999996 6666643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.78  E-value=1.7  Score=35.58  Aligned_cols=32  Identities=19%  Similarity=0.019  Sum_probs=25.3

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      .-+|+|.| .|=||+++++.|...|. .++.+|.
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            34588888 67799999999999996 4666663

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.68  E-value=0.39  Score=41.11  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=26.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHH------hCCceEEEeeCC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIIL------SGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~------~GVg~I~LvD~D  149 (236)
                      .=|+|||+|..|+..|..|++      .|+. +.|+|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~   70 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKA   70 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCC
Confidence            458999999999999999998      5766 7777854

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.39  E-value=0.32  Score=38.84  Aligned_cols=32  Identities=16%  Similarity=0.065  Sum_probs=28.4

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      |+|||+|..|...|..+++.|.+ +.|+|.+.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~-V~liE~~~~   35 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAK-VALVEKSRL   35 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESSST
T ss_pred             EEEECCCHHHHHHHHHHHHCCCe-EEEEecCCC
Confidence            68999999999999999999985 888897653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=0.24  Score=36.93  Aligned_cols=30  Identities=17%  Similarity=0.050  Sum_probs=26.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      =|+|||.|..|.+.|..+++.|.. ..++|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            378999999999999999999997 666774

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.28  E-value=0.23  Score=40.14  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=27.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCC
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSG  149 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D  149 (236)
                      ..=|+|||+|..|..+|..|++ .|.. ++|+|..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~   66 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQS   66 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCe-EEEEecC
Confidence            3558999999999999999997 6986 7888853

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.28  Score=37.94  Aligned_cols=39  Identities=15%  Similarity=0.080  Sum_probs=33.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .+..++|+|+|.|-+|..+|+.|...|.. +.++|.|.+.
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp~~   59 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDPIN   59 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCe-eEeeecccch
Confidence            35678999999999999999999999987 8888877654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.94  E-value=0.41  Score=37.63  Aligned_cols=35  Identities=17%  Similarity=-0.031  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~V  151 (236)
                      .+|+|||+|+.|-..|...+++|..  ++.++|.+.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            3689999999999999999999985  5788887653

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=86.88  E-value=0.2  Score=42.75  Aligned_cols=39  Identities=15%  Similarity=0.032  Sum_probs=32.2

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhC----------CceEEEeeCCcc
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSG----------VKSVCLLDSGVV  151 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~G----------Vg~I~LvD~D~V  151 (236)
                      ++...+|+|+|+|+.|..+++.|+.++          .++|.++|.+-+
T Consensus        22 ~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          22 LVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            456678999999999999999998773          347999997754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.80  E-value=0.3  Score=38.24  Aligned_cols=35  Identities=20%  Similarity=0.017  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      .=|+|||.|.-|-..|.++++.|..++.|+|.+..
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            44789999999999999999999999999986653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.72  E-value=0.35  Score=38.63  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=27.3

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+|+|.| .||+|.++|+.|+..|..+|.|+-
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~   41 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVS   41 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            5788888 679999999999999999888863

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.67  E-value=0.29  Score=40.16  Aligned_cols=33  Identities=21%  Similarity=0.081  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      =|+|||+|..|...|..|+..|.. +.|++....
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~-V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAK-VILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            389999999999999999999986 888886544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.47  E-value=0.38  Score=38.00  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=26.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++|+|.| .+|+|.++|+.|+..|.. +.++|..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~-V~~~~~~   34 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIR   34 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            4678888 568999999999999997 7777753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.47  E-value=0.12  Score=38.43  Aligned_cols=28  Identities=11%  Similarity=-0.050  Sum_probs=24.7

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCce
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKS  142 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~  142 (236)
                      ..++|+|||+|.+|+++|..+++.|...
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            3468999999999999999999999753

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.44  E-value=0.26  Score=37.91  Aligned_cols=35  Identities=11%  Similarity=0.006  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccccc
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKE  154 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~s  154 (236)
                      +|+|||+|-+|..+|-.|+ .|. +++.+|-|.=..+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~   36 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVD   36 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHH
Confidence            4789999999999998776 576 6888897753333

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.33  E-value=0.26  Score=38.28  Aligned_cols=29  Identities=24%  Similarity=-0.010  Sum_probs=25.9

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      |+|||+|..|-..|.++++.|.. +.|+|.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~k-V~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKK-VMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCC-EEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence            78999999999999999999998 667773

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.29  E-value=0.31  Score=40.63  Aligned_cols=30  Identities=13%  Similarity=0.010  Sum_probs=25.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      =|+|||.|..|+.+|..|+.+|.. +.+++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~-VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIP-TQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEeC
Confidence            368999999999999999999985 666663

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.45  Score=37.15  Aligned_cols=34  Identities=9%  Similarity=-0.057  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~  150 (236)
                      ..++|||.|-+|.++|..|...|. ++|++++.+.
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            457899999999999999999887 4899998654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.18  E-value=0.44  Score=35.10  Aligned_cols=33  Identities=9%  Similarity=0.015  Sum_probs=27.1

Q ss_pred             ceEEEE--cCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587         117 YVYSTG--PLTRVGAEIAKNIILSGVKSVCLLDSGV  150 (236)
Q Consensus       117 ~~VlIV--G~GgvGsevak~La~~GVg~I~LvD~D~  150 (236)
                      ..|+|+  |.|-+|+++|..|+..|. +++|+..+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            455555  889999999999999997 599998654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.18  E-value=2.3  Score=33.14  Aligned_cols=53  Identities=17%  Similarity=0.097  Sum_probs=36.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT  190 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~  190 (236)
                      +.+|.|+ +|+|..+|+.|+..|. ++.+.|.+.                   ..+++.+++++.+..+...+.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~   56 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS-------------------EGAAQRLVAELNAARAGSAVL   56 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-------------------HHHHHHHHHHHHHHSTTCEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc-------------------hHHHHHHHHHHHhhcCCceEE
Confidence            4567774 5899999999999998 577877321                   123556777777777664433

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.12  E-value=0.77  Score=34.32  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=24.1

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhC--CceEEEee
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSG--VKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~G--Vg~I~LvD  147 (236)
                      .+|+|||+ |-+|.|+++.|....  +.++.++.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~   35 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA   35 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec
Confidence            47899996 779999999998774  45566655

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=86.03  E-value=0.34  Score=39.38  Aligned_cols=28  Identities=25%  Similarity=0.029  Sum_probs=25.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEE
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCL  145 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~L  145 (236)
                      =|+|||+|..|++.|.+.+++|.+.+.|
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            3789999999999999999999997755

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=86.03  E-value=1.6  Score=34.06  Aligned_cols=28  Identities=21%  Similarity=0.190  Sum_probs=21.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +|+|.|+ |-+|+.+++.|...|  ++..+|
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~   30 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALD   30 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEE
Confidence            4788895 779999999998766  455555

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.97  E-value=0.37  Score=33.75  Aligned_cols=33  Identities=0%  Similarity=-0.104  Sum_probs=26.7

Q ss_pred             ccccceEEEEcCChhHHHHHHHHHHhCCceEEE
Q psy9587         113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCL  145 (236)
Q Consensus       113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~L  145 (236)
                      .++.++|+|||.|..|..+|..|+..+-..+.+
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~   61 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ   61 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEE
Confidence            467789999999999999999998766554433

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.45  Score=39.25  Aligned_cols=39  Identities=8%  Similarity=-0.003  Sum_probs=33.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDV  156 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL  156 (236)
                      =|+|||.|..|...|..++..|.+ ++.|++...+..+|-
T Consensus         7 DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            479999999999999999999887 799999877666554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.71  E-value=1.4  Score=36.59  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=51.6

Q ss_pred             cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      .+.++|+-||||. | .++..+++.|..+++.+|...                     .++.+++..++.+-.-+++...
T Consensus        37 ~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s~---------------------~~~~a~~~~~~~~~~~~i~~i~   93 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMSS---------------------IIEMAKELVELNGFSDKITLLR   93 (328)
T ss_dssp             HTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESST---------------------HHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCCH---------------------HHHHHHHHHHHhCccccceEEE
Confidence            3568999999984 3 456778899999999988421                     2444566666666666777777


Q ss_pred             cCCCcchhhhcCCCcEEEEc
Q psy9587         194 TKVDEISEEFVHGFDVVIAT  213 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~  213 (236)
                      ....+... --..+|+|+..
T Consensus        94 ~~~~~l~~-~~~~~D~i~se  112 (328)
T d1g6q1_          94 GKLEDVHL-PFPKVDIIISE  112 (328)
T ss_dssp             SCTTTSCC-SSSCEEEEEEC
T ss_pred             eehhhccC-cccceeEEEEE
Confidence            76544320 12578998864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.47  E-value=0.51  Score=36.71  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=27.1

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587         117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG  149 (236)
Q Consensus       117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D  149 (236)
                      ++++|.|+ +|+|.++|+.|+..|.. +.+.|.+
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~   34 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYR-VVVLDLR   34 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            56788885 69999999999999985 8888865

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.16  E-value=0.74  Score=36.83  Aligned_cols=30  Identities=23%  Similarity=0.132  Sum_probs=24.2

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      .+|+|.| .+|+|.++|+.|+..|.. +.+.|
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~   32 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNY   32 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence            3677878 559999999999999987 55555

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.14  E-value=0.52  Score=38.64  Aligned_cols=35  Identities=14%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      .=|+|||+|..|...|..++..|.. +.|++...+.
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~-V~vlEK~~~~   54 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGAN-VILVDKAPFS   54 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCC-EEEECSSSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCCC
Confidence            3489999999999999999999976 7888866543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.03  E-value=0.68  Score=36.29  Aligned_cols=33  Identities=21%  Similarity=0.125  Sum_probs=25.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      +|+|.|+ |-+|+++++.|...|.. +..+|...+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~~   36 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVE-VIPTDVQDL   36 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCE-EEEeechhc
Confidence            4789996 88999999999988875 555564433

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.87  E-value=1.6  Score=36.40  Aligned_cols=72  Identities=14%  Similarity=0.027  Sum_probs=50.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET  194 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~  194 (236)
                      ..+++|+|+|..+-..+..|.. ..+.+|.+++.+                    ..+++.++++++.....+.+  .  
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~--------------------~e~~~~~~~~~~~~~~~~~~--~--  180 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR--------------------EKAAKKFVSYCEDRGISASV--Q--  180 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS--------------------HHHHHHHHHHHHHTTCCEEE--C--
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCC--------------------HHHHHHHHHHHHhcCCcccc--c--
Confidence            4678999999999999988774 456788876521                    23567777888877544321  1  


Q ss_pred             CCCcchhhhcCCCcEEEEcCCC
Q psy9587         195 KVDEISEEFVHGFDVVIATSCN  216 (236)
Q Consensus       195 ~l~~~~~~~l~~~DlVI~~~d~  216 (236)
                           ..+.+.++|+|+.|+.+
T Consensus       181 -----~~~a~~~aDiV~taT~s  197 (320)
T d1omoa_         181 -----PAEEASRCDVLVTTTPS  197 (320)
T ss_dssp             -----CHHHHTSSSEEEECCCC
T ss_pred             -----hhhhhccccEEEEeccC
Confidence                 12345789999998854

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.26  E-value=0.93  Score=35.61  Aligned_cols=33  Identities=15%  Similarity=0.026  Sum_probs=27.3

Q ss_pred             eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587         118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVV  151 (236)
Q Consensus       118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~V  151 (236)
                      +|+|.| .+|+|.++++.|+..|.. +.++|.+.-
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCch
Confidence            578888 569999999999999976 788886643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.57  Score=33.52  Aligned_cols=38  Identities=18%  Similarity=0.030  Sum_probs=32.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccccc
Q psy9587         116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKE  154 (236)
Q Consensus       116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~s  154 (236)
                      ..+|+|+|.|-+|-.++.....+|+. +.++|++.-.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~~PA   48 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYADAPA   48 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTTCGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCCCch
Confidence            35799999999999999999999997 677898765553

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.53  E-value=0.58  Score=35.14  Aligned_cols=33  Identities=12%  Similarity=-0.098  Sum_probs=27.4

Q ss_pred             ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587         115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD  147 (236)
                      +..+|+|+|+ |++|...++.+...|...|.+.+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~   61 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG   61 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccc
Confidence            4468999996 99999999999999997666654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.50  E-value=0.58  Score=39.21  Aligned_cols=31  Identities=16%  Similarity=0.097  Sum_probs=25.9

Q ss_pred             ceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~  148 (236)
                      .+|+|.|+. =+|+++++.|...|. .++.+|+
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iDn   33 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY-EVCIVDN   33 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEec
Confidence            578999955 499999999999995 5888883

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.43  E-value=0.34  Score=39.18  Aligned_cols=29  Identities=17%  Similarity=0.116  Sum_probs=23.4

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEE
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCL  145 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~L  145 (236)
                      ++|+|.| .|-||+.+++.|+..|-..+.+
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~   32 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVL   32 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEe
Confidence            4789999 6679999999999988765433

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.63  Score=38.20  Aligned_cols=31  Identities=10%  Similarity=0.118  Sum_probs=25.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      ++|+|.| +|-+|+++++.|+..|- .++.+|.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5788888 66799999999999995 5777773

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.95  E-value=2  Score=33.88  Aligned_cols=75  Identities=12%  Similarity=-0.025  Sum_probs=43.1

Q ss_pred             ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE  193 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~  193 (236)
                      +..+|+.||+|+ |-..| .|+ +.| ++++.+|.|.    ++                ++.+.+.+.+.+- .+++...
T Consensus        78 ~g~~VLeIGsGs-GY~ta-ila~l~g-~~V~~ie~~~----~l----------------~~~a~~~l~~~g~-~nv~~~~  133 (215)
T d1jg1a_          78 PGMNILEVGTGS-GWNAA-LISEIVK-TDVYTIERIP----EL----------------VEFAKRNLERAGV-KNVHVIL  133 (215)
T ss_dssp             TTCCEEEECCTT-SHHHH-HHHHHHC-SCEEEEESCH----HH----------------HHHHHHHHHHTTC-CSEEEEE
T ss_pred             ccceEEEecCCC-ChhHH-HHHHhhC-ceeEEEeccH----HH----------------HHHHHHHHHHcCC-ceeEEEE
Confidence            456899999974 33222 233 335 5577766442    22                4556666776653 3666666


Q ss_pred             cCCCcchhhhcCCCcEEEEcC
Q psy9587         194 TKVDEISEEFVHGFDVVIATS  214 (236)
Q Consensus       194 ~~l~~~~~~~l~~~DlVI~~~  214 (236)
                      .+..... .....||.|+.+.
T Consensus       134 gd~~~g~-~~~~pfD~Iiv~~  153 (215)
T d1jg1a_         134 GDGSKGF-PPKAPYDVIIVTA  153 (215)
T ss_dssp             SCGGGCC-GGGCCEEEEEECS
T ss_pred             CccccCC-cccCcceeEEeec
Confidence            6543321 2246799998765

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=82.87  E-value=0.53  Score=39.57  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=24.5

Q ss_pred             EEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587         119 YSTGPLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       119 VlIVG~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      |+|||.|.-||-+|.-|+..|. ++.|+.
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~-~VlvLE   32 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGK-KVLLLE   32 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEC
T ss_pred             EEEECcCHHHHHHHHHHhhCCC-eEEEEE
Confidence            6899999999999999999997 466665

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=82.74  E-value=5.4  Score=29.56  Aligned_cols=29  Identities=14%  Similarity=0.066  Sum_probs=21.6

Q ss_pred             hhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587         201 EEFVHGFDVVIATSCNPNQLIKIDDFCRS  229 (236)
Q Consensus       201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~  229 (236)
                      .+.++++|+||.|+.+..+.....++...
T Consensus        59 ~~~~~~~DvvF~alp~~~s~~~~~~l~~~   87 (147)
T d1mb4a1          59 IESLKQLDAVITCQGGSYTEKVYPALRQA   87 (147)
T ss_dssp             HHHHTTCSEEEECSCHHHHHHHHHHHHHT
T ss_pred             hhhhccccEEEEecCchHHHHHhHHHHHc
Confidence            34578999999999887777776555443

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.32  E-value=0.76  Score=36.53  Aligned_cols=33  Identities=12%  Similarity=-0.064  Sum_probs=27.3

Q ss_pred             ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587         115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS  148 (236)
Q Consensus       115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~  148 (236)
                      +..-|+|||.|..|.+.|..+++.|.. .++++.
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~k-v~vve~   73 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGR-QLIVDR   73 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence            345588999999999999999999996 556654

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.30  E-value=3.7  Score=29.61  Aligned_cols=38  Identities=13%  Similarity=-0.030  Sum_probs=31.0

Q ss_pred             ccceEEEEcC----ChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587         115 KIYVYSTGPL----TRVGAEIAKNIILSGVKSVCLLDSGVVT  152 (236)
Q Consensus       115 k~~~VlIVG~----GgvGsevak~La~~GVg~I~LvD~D~Ve  152 (236)
                      +-++|+|||+    |..|..++++|...|-++|..|.+..-+
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~   48 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE   48 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc
Confidence            4478999997    6789999999987777899999876533

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=81.46  E-value=0.55  Score=38.76  Aligned_cols=38  Identities=21%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccC
Q psy9587         117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKED  155 (236)
Q Consensus       117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sN  155 (236)
                      .=|+|||.|..|...|..++..|.. +.|++...+.-+|
T Consensus         8 ~DVlVVG~G~AGl~AAl~aa~~G~~-V~lleK~~~~gg~   45 (330)
T d1neka2           8 FDAVVIGAGGAGMRAALQISQSGQT-CALLSKVFPTRSH   45 (330)
T ss_dssp             ESCEEECCSHHHHHHHHHHHHTTCC-CEEECSSCGGGSG
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCe-EEEEeCCCCCCCc
Confidence            3478999999999999999999985 8888877665544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=81.18  E-value=2.7  Score=31.74  Aligned_cols=31  Identities=13%  Similarity=0.055  Sum_probs=25.3

Q ss_pred             ceEEEE--cCChhHHHHHHHHHHhCCceEEEee
Q psy9587         117 YVYSTG--PLTRVGAEIAKNIILSGVKSVCLLD  147 (236)
Q Consensus       117 ~~VlIV--G~GgvGsevak~La~~GVg~I~LvD  147 (236)
                      ..|+|+  |.|++|..+++..-..|+..|.++.
T Consensus        30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~   62 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIR   62 (189)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEe
Confidence            456777  5688999999999899999888765

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=80.99  E-value=0.81  Score=34.60  Aligned_cols=31  Identities=6%  Similarity=-0.016  Sum_probs=21.8

Q ss_pred             cceEEEEcCChhHHHHH-HHHHHhCCceEEEe
Q psy9587         116 IYVYSTGPLTRVGAEIA-KNIILSGVKSVCLL  146 (236)
Q Consensus       116 ~~~VlIVG~GgvGseva-k~La~~GVg~I~Lv  146 (236)
                      ..+|+|||+|++|.+.. +.|-.....++..+
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~av   35 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAM   35 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEE
Confidence            35799999999999754 55544555555554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.54  E-value=0.74  Score=36.61  Aligned_cols=68  Identities=3%  Similarity=0.021  Sum_probs=40.3

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCCcccccCC---CCCccccCCCcCCChH-HHHHHHHHHhh
Q psy9587         116 IYVYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDV---NTAQFLAPHEDIGKNR-AKSSEARAQNL  183 (236)
Q Consensus       116 ~~~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL---~~rq~l~~~~dIGk~K-aea~~~~L~~i  183 (236)
                      .++|+|.|+ +|+|-++|+.|+..|.. ++.+...+.-....+   .+-++.+-..|+.... ++.+.+.+.+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   76 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHH
Confidence            367888885 59999999999999975 566665443211111   0222233345666543 45555555543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=80.30  E-value=0.057  Score=42.26  Aligned_cols=101  Identities=13%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC-CChHHHHHHHH-HHhhCCCceEEEEecC
Q psy9587         118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI-GKNRAKSSEAR-AQNLNPNVEVTSNETK  195 (236)
Q Consensus       118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI-Gk~Kaea~~~~-L~~inp~v~I~~~~~~  195 (236)
                      +|+|=|.|.+|-.+++.+...++.-+.+-| ...+.+++   .+++..+.+ |+.+.++-... -..+| .-+|....  
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd-~~~~~~~~---~yLlkyDS~hG~~~~~i~~~~~~l~in-g~~I~~~~--   74 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND-PFIALEYM---VYMFKYDSTHGMFKGEVKAEDGALVVD-GKKITVFN--   74 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC-TTSCHHHH---HHHHHCCTTTCCCSSCEEEETTEEEET-TEEEEEEC--
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC-CCcCHHHH---HHHHhcccccCCcCCeEEEeCCEEEEC-CEEEEEEe--
Confidence            689999999999999999999985444444 34455555   234544444 55432110000 00000 00111111  


Q ss_pred             CCcchhhh--c--CCCcEEEEcCCCHHHHHHHHHHH
Q psy9587         196 VDEISEEF--V--HGFDVVIATSCNPNQLIKIDDFC  227 (236)
Q Consensus       196 l~~~~~~~--l--~~~DlVI~~~d~~~~r~~In~~c  227 (236)
                        ..+++-  +  .+.|+||+|++-..++.......
T Consensus        75 --~~~p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl  108 (169)
T d1dssg1          75 --EMKPENIPWSKAGAEYIVESTGVFTTIEKASAHF  108 (169)
T ss_dssp             --CSSGGGCCHHHHTCCEEEECSSSCCSHHHHGGGG
T ss_pred             --cCChHHCCccccCCCEEEecCceEcCHHHHHHHH
Confidence              112221  2  26999999998776665554433